Diff of the two buildlogs: -- --- b1/build.log 2024-01-07 03:25:44.200295949 +0000 +++ b2/build.log 2024-01-07 05:03:07.439798264 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Feb 7 19:33:17 -12 2025 -I: pbuilder-time-stamp: 1738999997 +I: Current time: Sun Jan 7 17:25:58 +14 2024 +I: pbuilder-time-stamp: 1704597958 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -18,7 +18,7 @@ I: copying [./gromacs_2020.6-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.IV_tZh3q/trustedkeys.kbx': General error +gpgv: keyblock resource '/tmp/dpkg-verify-sig.nl6OzmHf/trustedkeys.kbx': General error gpgv: Signature made Mon Mar 29 05:23:05 2021 gpgv: using RSA key 843E5FA61E6063389876D2E5EE4AFD69EC65108F gpgv: issuer "nbreen@debian.org" @@ -39,49 +39,80 @@ dpkg-source: info: applying mpi-tests-localhost.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3709870/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1111284/tmp/hooks/D01_modify_environment starting +debug: Running on ionos11-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jan 7 03:26 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1111284/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1111284/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=16 ' - DISTRIBUTION='bullseye' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=15 ' + DIRSTACK=() + DISTRIBUTION=bullseye + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='9409e1b3684e42e48aa412548191310f' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3709870' - PS1='# ' - PS2='> ' + INVOCATION_ID=f2b4d80c9be345038c23db77f3b084c4 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1111284 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.C1oULqzK/pbuilderrc_u59Y --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.C1oULqzK/b1 --logfile b1/build.log gromacs_2020.6-2.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.C1oULqzK/pbuilderrc_260q --distribution bullseye --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.C1oULqzK/b2 --logfile b2/build.log gromacs_2020.6-2.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 I: uname -a - Linux ionos5-amd64 6.5.0-0.deb12.4-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.5.10-1~bpo12+1 (2023-11-23) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-17-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.69-1 (2023-12-30) x86_64 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1234376 Mar 27 2022 bash @@ -141,7 +172,7 @@ -rwxr-xr-x 1 root root 52032 Sep 24 2020 rmdir -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Jan 8 15:46 sh -> dash + lrwxrwxrwx 1 root root 9 Jan 7 03:26 sh -> /bin/bash -rwxr-xr-x 1 root root 43808 Sep 24 2020 sleep -rwxr-xr-x 1 root root 84928 Sep 24 2020 stty -rwsr-xr-x 1 root root 71912 Jan 20 2022 su @@ -167,7 +198,7 @@ -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew -I: user script /srv/workspace/pbuilder/3709870/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/1111284/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -532,7 +563,7 @@ Get: 279 http://deb.debian.org/debian bullseye/main amd64 texlive-latex-recommended all 2020.20210202-3 [14.5 MB] Get: 280 http://deb.debian.org/debian bullseye/main amd64 texlive-pictures all 2020.20210202-3 [6743 kB] Get: 281 http://deb.debian.org/debian bullseye/main amd64 texlive-latex-extra all 2020.20210202-3 [13.7 MB] -Fetched 254 MB in 11s (23.5 MB/s) +Fetched 254 MB in 21s (12.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17743 files and directories currently installed.) @@ -1437,8 +1468,8 @@ Setting up tzdata (2021a-1+deb11u10) ... Current default time zone: 'Etc/UTC' -Local time is now: Sat Feb 8 07:37:49 UTC 2025. -Universal Time is now: Sat Feb 8 07:37:49 UTC 2025. +Local time is now: Sun Jan 7 03:27:44 UTC 2024. +Universal Time is now: Sun Jan 7 03:27:44 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libgts-0.7-5:amd64 (0.7.6+darcs121130-4+b1) ... @@ -1758,7 +1789,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/gromacs-2020.6/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../gromacs_2020.6-2_source.changes +I: user script /srv/workspace/pbuilder/1111284/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for bullseye +I: user script /srv/workspace/pbuilder/1111284/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/gromacs-2020.6/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../gromacs_2020.6-2_source.changes dpkg-buildpackage: info: source package gromacs dpkg-buildpackage: info: source version 2020.6-2 dpkg-buildpackage: info: source distribution unstable @@ -3106,7 +3141,7 @@ -- Build files have been written to: /build/reproducible-path/gromacs-2020.6/build/openmpi-dp touch configure-stamp dh_testdir -/usr/bin/make -j16 -C build/basic +/usr/bin/make -j15 -C build/basic make[1]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/cmake -S/build/reproducible-path/gromacs-2020.6 -B/build/reproducible-path/gromacs-2020.6/build/basic --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/gromacs-2020.6/build/basic/CMakeFiles /build/reproducible-path/gromacs-2020.6/build/basic//CMakeFiles/progress.marks @@ -3114,186 +3149,186 @@ make[2]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend +/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= +/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/CMakeFiles/vmddlopen.dir/DependInfo.cmake --color= -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend -Scanning dependencies of target scanner +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/programs /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= -/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/programs /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= -Scanning dependencies of target lmfit_objlib Scanning dependencies of target release-version-info -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/parser.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/parser.cpp -/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build +Scanning dependencies of target lmfit_objlib Scanning dependencies of target vmddlopen make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/basic/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/basic/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake -Scanning dependencies of target tng_io_obj -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/scanner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/scanner.cpp +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build /usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build +Scanning dependencies of target scanner +Scanning dependencies of target linearalgebra +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio && /usr/bin/c++ -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/vmddlopen.dir/__/__/external/vmd_molfile/vmddlopen.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/vmd_molfile/vmddlopen.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -std=c++14 -o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/lmfit/lmmin.cpp make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio && /usr/bin/c++ -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/vmddlopen.dir/__/__/external/vmd_molfile/vmddlopen.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/vmd_molfile/vmddlopen.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/parser.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/parser.cpp make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwlzh.c -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwt.c -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/coder.c -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/dict.c -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/fixpoint.c -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/huffman.c -Scanning dependencies of target linearalgebra Scanning dependencies of target mdrun_objlib +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/eigensolver.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/scanner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/scanner.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/gmx_arpack.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/matrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/matrix.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/nrjac.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/nrjac.cpp make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/sparsematrix.cpp +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +Scanning dependencies of target tng_io_obj +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/mdrun.cpp make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/eigensolver.cpp -Scanning dependencies of target view_objlib +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwlzh.c make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +Scanning dependencies of target view_objlib Scanning dependencies of target thread_mpi -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/mdrun.cpp make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/3dview.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/view/3dview.cpp Scanning dependencies of target modularsimulator +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/errhandler.cpp -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build +[ 0%] Built target release-version-info +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwt.c make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/checkpointhelper.cpp -[ 0%] Built target release-version-info -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/nonbonded_bench.cpp make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/huffmem.c -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/lz77.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/lz77.c [ 0%] Built target vmddlopen -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/merge_sort.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/merge_sort.c cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/tmpi_malloc.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/mtf.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/mtf.c cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/atomic.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/rle.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/rle.c cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/lock.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/tng_compress.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/tng_compress.c -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/vals16.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/vals16.c -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/warnmalloc.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/warnmalloc.c -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/gmx_arpack.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/widemuldiv.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/widemuldiv.c cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/pthreads.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc2.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/xtc2.c -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc3.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/xtc3.c -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/lib/tng_io.c -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src 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'/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build Scanning dependencies of target template +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmx.dir/gmx.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/gmx.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmx.dir/legacymodules.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/legacymodules.cpp make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -Scanning dependencies of target gmx cd /build/reproducible-path/gromacs-2020.6/build/basic/share/template && /usr/bin/c++ -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -std=c++14 -o CMakeFiles/template.dir/template.cpp.o -c /build/reproducible-path/gromacs-2020.6/share/template/template.cpp -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' Scanning dependencies of target gmxapi -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmx.dir/gmx.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/gmx.cpp make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/api/cpp/CMakeFiles/gmxapi.dir/build.make src/api/cpp/CMakeFiles/gmxapi.dir/build -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmx.dir/legacymodules.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/legacymodules.cpp make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -Dgmxapi_EXPORTS -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/src/api/cpp -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi.dir/context.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/context.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -Dgmxapi_EXPORTS -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/src/api/cpp -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi.dir/exceptions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/exceptions.cpp @@ -4106,14 +4141,14 @@ cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -Dgmxapi_EXPORTS -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/src/api/cpp -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi.dir/version.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/version.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -Dgmxapi_EXPORTS -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/src/api/cpp -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi.dir/workflow.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/workflow.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -Dgmxapi_EXPORTS -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/src/api/cpp -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi.dir/tpr.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tpr.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/share/template && /usr/bin/cmake -E cmake_link_script CMakeFiles/template.dir/link.txt --verbose=1 cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmx.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/template.dir/template.cpp.o -o ../../bin/template ../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/gmx.dir/gmx.cpp.o CMakeFiles/gmx.dir/legacymodules.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o CMakeFiles/view_objlib.dir/view/3dview.cpp.o CMakeFiles/view_objlib.dir/view/buttons.cpp.o CMakeFiles/view_objlib.dir/view/dialogs.cpp.o CMakeFiles/view_objlib.dir/view/fgrid.cpp.o CMakeFiles/view_objlib.dir/view/filter.cpp.o CMakeFiles/view_objlib.dir/view/logo.cpp.o CMakeFiles/view_objlib.dir/view/manager.cpp.o CMakeFiles/view_objlib.dir/view/molps.cpp.o CMakeFiles/view_objlib.dir/view/nleg.cpp.o CMakeFiles/view_objlib.dir/view/nmol.cpp.o CMakeFiles/view_objlib.dir/view/popup.cpp.o CMakeFiles/view_objlib.dir/view/pulldown.cpp.o CMakeFiles/view_objlib.dir/view/view.cpp.o CMakeFiles/view_objlib.dir/view/x11.cpp.o CMakeFiles/view_objlib.dir/view/xdlg.cpp.o CMakeFiles/view_objlib.dir/view/xdlghi.cpp.o CMakeFiles/view_objlib.dir/view/xdlgitem.cpp.o CMakeFiles/view_objlib.dir/view/xmb.cpp.o CMakeFiles/view_objlib.dir/view/xutil.cpp.o -o ../../bin/gmx ../../lib/libgromacs.so.5.0.0 /usr/lib/x86_64-linux-gnu/libX11.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 98%] Built target template -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' [ 98%] Built target gmx +cd /build/reproducible-path/gromacs-2020.6/build/basic/share/template && /usr/bin/cmake -E cmake_link_script CMakeFiles/template.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/template.dir/template.cpp.o -o ../../bin/template ../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +[ 98%] Built target template cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxapi.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libgmxapi.so.0 -o ../../../lib/libgmxapi.so.0.1.0 CMakeFiles/gmxapi.dir/context.cpp.o CMakeFiles/gmxapi.dir/exceptions.cpp.o CMakeFiles/gmxapi.dir/gmxapi.cpp.o CMakeFiles/gmxapi.dir/md.cpp.o CMakeFiles/gmxapi.dir/mdmodule.cpp.o CMakeFiles/gmxapi.dir/mdsignals.cpp.o CMakeFiles/gmxapi.dir/session.cpp.o CMakeFiles/gmxapi.dir/status.cpp.o CMakeFiles/gmxapi.dir/system.cpp.o CMakeFiles/gmxapi.dir/version.cpp.o CMakeFiles/gmxapi.dir/workflow.cpp.o CMakeFiles/gmxapi.dir/tpr.cpp.o ../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libgmxapi.so.0.1.0 ../../../lib/libgmxapi.so.0 ../../../lib/libgmxapi.so @@ -4122,192 +4157,192 @@ make[2]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/gromacs-2020.6/build/basic/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -j16 -C build/basic-dp +/usr/bin/make -j15 -C build/basic-dp make[1]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/cmake -S/build/reproducible-path/gromacs-2020.6 -B/build/reproducible-path/gromacs-2020.6/build/basic-dp --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/gromacs-2020.6/build/basic-dp/CMakeFiles /build/reproducible-path/gromacs-2020.6/build/basic-dp//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" 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-/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend -Scanning dependencies of target lmfit_objlib -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= +/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/CMakeFiles/vmddlopen.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= Scanning dependencies of target release-version-info +Scanning dependencies of target vmddlopen +Scanning dependencies of target lmfit_objlib +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/basic-dp/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/basic-dp/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -std=c++14 -o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/lmfit/lmmin.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio && /usr/bin/c++ -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/vmddlopen.dir/__/__/external/vmd_molfile/vmddlopen.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/vmd_molfile/vmddlopen.cpp make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend +Scanning dependencies of target linearalgebra +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -std=c++14 -o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/lmfit/lmmin.cpp Scanning dependencies of target scanner make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/CMakeFiles/vmddlopen.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -Scanning dependencies of target thread_mpi +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +Scanning dependencies of target mdrun_objlib +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/eigensolver.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/gmx_arpack.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/matrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/matrix.cpp +/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/nrjac.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/nrjac.cpp make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/parser.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/parser.cpp -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/sparsematrix.cpp +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/scanner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/scanner.cpp Scanning dependencies of target tng_io_obj make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +Scanning dependencies of target view_objlib /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/scanner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/scanner.cpp -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/errhandler.cpp make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwlzh.c -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend -Scanning dependencies of target vmddlopen -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/tmpi_malloc.cpp -Scanning dependencies of target linearalgebra +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/mdrun.cpp make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwt.c make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwlzh.c +Scanning dependencies of target thread_mpi Scanning dependencies of target modularsimulator -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/atomic.cpp +/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' [ 0%] Built target release-version-info -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/coder.c -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/lock.cpp +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/3dview.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/view/3dview.cpp /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/eigensolver.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/dict.c -/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio && /usr/bin/c++ -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/vmddlopen.dir/__/__/external/vmd_molfile/vmddlopen.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/vmd_molfile/vmddlopen.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/errhandler.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/buttons.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/view/buttons.cpp make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/checkpointhelper.cpp -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= -Scanning dependencies of target mdrun_objlib -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/mdrun.cpp -Scanning dependencies of target view_objlib make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/3dview.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/view/3dview.cpp +[ 0%] Built target vmddlopen +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/tmpi_malloc.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/atomic.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/lock.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/pthreads.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/fixpoint.c -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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/build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/compositesimulatorelement.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/alltoall.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/alltoall.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src 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CMakeFiles/view_objlib.dir/view/dialogs.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/view/dialogs.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/fgrid.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/view/fgrid.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/filter.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/view/filter.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_protocol.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/p2p_protocol.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/huffman.c cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem 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-std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/p2p_send_recv.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/huffmem.c cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/bcast.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/bcast.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 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-c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/p2p_wait.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/collective.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/collective.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src 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/build/reproducible-path/gromacs-2020.6/src/programs/view/molps.cpp +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/fixpoint.c cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 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/build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/forceelement.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/xdlghi.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/view/xdlghi.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/shellfcelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/shellfcelement.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/xdlgitem.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/view/xdlgitem.cpp -cd 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/usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/xmb.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/view/xmb.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/xutil.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/view/xutil.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/parrinellorahmanbarostat.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H 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/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/signallers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/signallers.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/statepropagatordata.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/topologyholder.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/xutil.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/view/xutil.cpp -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 3%] Built target thread_mpi cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/trajectoryelement.cpp +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +[ 1%] Built target view_objlib cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/vrescalethermostat.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/vrescalethermostat.cpp make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 5%] Built target view_objlib +[ 1%] Built target linearalgebra make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 5%] Built target linearalgebra +[ 5%] Built target thread_mpi make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' [ 6%] Built target scanner make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' @@ -5087,9 +5122,9 @@ make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' [ 98%] Built target libgromacs /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend +/usr/bin/make -f src/api/cpp/CMakeFiles/gmxapi.dir/build.make src/api/cpp/CMakeFiles/gmxapi.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake --color= -/usr/bin/make -f src/api/cpp/CMakeFiles/gmxapi.dir/build.make src/api/cpp/CMakeFiles/gmxapi.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/api/cpp /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/CMakeFiles/gmxapi.dir/DependInfo.cmake --color= Scanning dependencies of target gmx @@ -5097,8 +5132,8 @@ /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmx.dir/gmx.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/gmx.cpp -Scanning dependencies of target gmxapi cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmx.dir/legacymodules.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/legacymodules.cpp +Scanning dependencies of target gmxapi make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/api/cpp/CMakeFiles/gmxapi.dir/build.make src/api/cpp/CMakeFiles/gmxapi.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' @@ -5126,7 +5161,7 @@ make[2]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/gromacs-2020.6/build/basic-dp/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -j16 -C build/basic tests +/usr/bin/make -j15 -C build/basic tests make[1]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/cmake -S/build/reproducible-path/gromacs-2020.6 -B/build/reproducible-path/gromacs-2020.6/build/basic --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/make -f CMakeFiles/Makefile2 tests @@ -5136,95 +5171,95 @@ /usr/bin/make -f CMakeFiles/Makefile2 CMakeFiles/tests.dir/all make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend +/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend +/usr/bin/make -f src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build.make src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/depend +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -make[4]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/CMakeFiles/vmddlopen.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/external/googletest/googlemock/gtest /build/reproducible-path/gromacs-2020.6/build/basic/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/programs /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build -cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/basic/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/basic/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/basic/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/basic/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 0%] Built target scanner +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -make[4]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +make[4]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build +/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -make[4]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 0%] Built target release-version-info -[ 0%] Built target lmfit_objlib -[ 1%] Built target tng_io_obj -/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/CMakeFiles/vmddlopen.dir/DependInfo.cmake --color= -/usr/bin/make -f src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build.make src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/depend -[ 3%] Built target thread_mpi -[ 4%] Built target linearalgebra +make[4]: Nothing to be done for 'src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build'. +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +make[4]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/external/googletest/googlemock/gtest /build/reproducible-path/gromacs-2020.6/build/basic/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/DependInfo.cmake --color= -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend -[ 5%] Built target modularsimulator make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/programs /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= +make[4]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -make[4]: Nothing to be done for 'src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build'. +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -Scanning dependencies of target gtest -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build +Scanning dependencies of target gtest make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build.make src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build -make[4]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. +make[4]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build.make src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build +[ 0%] Built target scanner +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +[ 1%] Built target linearalgebra make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/external/googletest/googlemock/gtest && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_CREATE_SHARED_LIBRARY=1 -Dgtest_EXPORTS -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -I/build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wshadow -DGTEST_HAS_PTHREAD=1 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=c++14 -o CMakeFiles/gtest.dir/src/gtest-all.cc.o -c /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/src/gtest-all.cc -[ 5%] Built target vmddlopen +[ 1%] Built target lmfit_objlib +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +[ 2%] Built target tng_io_obj +[ 2%] Built target vmddlopen +[ 3%] Built target mdrun_objlib +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +[ 4%] Built target modularsimulator +[ 7%] Built target thread_mpi +[ 7%] Built target release-version-info /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend -[ 7%] Built target mdrun_objlib make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' @@ -5294,141 +5329,121 @@ make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' [ 69%] Built target testutils /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend +/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend +/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/testutils/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/testutils/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend -Scanning dependencies of target testutils-mpi-test -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/depend -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/mpitest.cpp -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= -Scanning dependencies of target testutils-test -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build +/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/domdec/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake --color= -Scanning dependencies of target utility-mpi-test -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -Scanning dependencies of target mdrun_test_infrastructure -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/build -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/interactivetest.cpp -/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/energyreader.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/energyreader.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/refdata_tests.cpp -Scanning dependencies of target utility-test +/usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/physicalnodecommunicator_mpi.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/energycomparison.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/energycomparison.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/testasserts_tests.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/moduletest.cpp +/usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fft/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fft/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/xvgtest_tests.cpp +/usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= Scanning dependencies of target onlinehelp-test-shared -/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/alignedallocator.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/hardware/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/hardware/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color= +Scanning dependencies of target testutils-mpi-test +/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build +Scanning dependencies of target utility-mpi-test +Scanning dependencies of target mdrun_test_infrastructure +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/mock_helptopic.cpp +/usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/build Scanning dependencies of target domdec-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build -Scanning dependencies of target mdlib-test +/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/energyreader.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/energyreader.cpp +Scanning dependencies of target testutils-test +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +Scanning dependencies of target applied_forces-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests/hashedmap.cpp -/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build +/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/mpitest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/energycomparison.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/energycomparison.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/moduletest.cpp +Scanning dependencies of target fft-test make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/calc_verletbuf.cpp -Scanning dependencies of target applied_forces-test +/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/interactivetest.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfitting.cpp -Scanning dependencies of target ewald-test +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/physicalnodecommunicator_mpi.cpp +Scanning dependencies of target hardware-test +Scanning dependencies of target gpu_utils-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build +/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +Scanning dependencies of target ewald-test make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmebsplinetest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmegathertest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs.so.5.0.0 ../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfitting.cpp +/usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 69%] Built target testutils-mpi-test -/usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fft/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fft/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color= -Scanning dependencies of target fft-test +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests/hashedmap.cpp +Scanning dependencies of target utility-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build +/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fft/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/fft.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fft/tests/fft.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/mdmodulenotification.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/mdmodulenotification.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constr.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constr.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constrtestdata.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/terminationhelper.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 69%] Built target utility-mpi-test -/usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend +/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= -Scanning dependencies of target gpu_utils-test +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/alignedallocator.cpp +Scanning dependencies of target mdlib-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build +/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/gputest.cpp -/usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmebsplinetest.cpp +/usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/hardware/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/hardware/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color= -Scanning dependencies of target hardware-test -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/calc_verletbuf.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/gputest.cpp +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/hardware/tests/hardwaretopology.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests/localatomsetmanager.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/trajectorycomparison.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/trajectoryreader.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/trajectoryreader.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfittingoptions.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/mdmodulenotification.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/mdmodulenotification.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constr.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constr.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/terminationhelper.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/clfftinitializer.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/cmake -P CMakeFiles/onlinehelp-test-shared.dir/cmake_clean_target.cmake -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test-shared.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../../../lib/libonlinehelp-test-shared.a CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -/usr/bin/ranlib ../../../../lib/libonlinehelp-test-shared.a +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs.so.5.0.0 ../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 69%] Built target onlinehelp-test-shared +[ 69%] Built target testutils-mpi-test /usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= @@ -5437,36 +5452,35 @@ /usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd 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CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/arrayrefwithpadding.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security 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-fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/devicetransfers.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constrtestrunners.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd 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CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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/build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/bitmask32.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmesolvetest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/refdata_tests.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 69%] Built target domdec-test +[ 69%] Built target utility-mpi-test /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 Scanning dependencies of target mdrunutility-test-shared make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/energyoutput.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/trajectorycomparison.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/hostallocator.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests/localatomsetmanager.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/trajectoryreader.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/trajectoryreader.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/devicetransfers.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfittingoptions.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fft/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o 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-Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmegathertest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/cmake -P CMakeFiles/onlinehelp-test-shared.dir/cmake_clean_target.cmake +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test-shared.dir/link.txt --verbose=1 +/usr/bin/ar qc ../../../../lib/libonlinehelp-test-shared.a CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o +/usr/bin/ranlib ../../../../lib/libonlinehelp-test-shared.a make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 69%] Built target fft-test +[ 69%] Built target onlinehelp-test-shared /usr/bin/make -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/DependInfo.cmake --color= @@ -5475,74 +5489,54 @@ /usr/bin/make -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/accessor_policy.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 70%] Built target hardware-test +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfittingamplitudelookup.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/cmake -P CMakeFiles/mdrunutility-test-shared.dir/cmake_clean_target.cmake +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test-shared.dir/link.txt --verbose=1 /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color= +/usr/bin/ar qc ../../../../lib/libmdrunutility-test-shared.a CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o +/usr/bin/ranlib ../../../../lib/libmdrunutility-test-shared.a +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' Scanning dependencies of target onlinehelp-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/helpformat.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs.so.5.0.0 ../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 71%] Built target testutils-test +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +[ 69%] Built target mdrunutility-test-shared +[ 69%] Built target fft-test /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/electricfield.cpp make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake --color= +[ 70%] Built target hardware-test +/usr/bin/make -f src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build.make src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/pbcutil/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pbcutil/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/DependInfo.cmake --color= Scanning dependencies of target options-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/abstractoptionstorage.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/expanded.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/expanded.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extents.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/extents.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/bitmask64.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/leapfrog.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/helpmanager.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/leapfrogtestdata.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -P CMakeFiles/mdrun_test_infrastructure.dir/cmake_clean_target.cmake -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun_test_infrastructure.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../../../lib/libmdrun_test_infrastructure.a CMakeFiles/mdrun_test_infrastructure.dir/energyreader.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/energycomparison.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/mdmodulenotification.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/trajectoryreader.cpp.o -/usr/bin/ranlib ../../../../lib/libmdrun_test_infrastructure.a -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 71%] Built target mdrun_test_infrastructure -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extensions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/extensions.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/cmake -P CMakeFiles/mdrunutility-test-shared.dir/cmake_clean_target.cmake -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test-shared.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../../../lib/libmdrunutility-test-shared.a CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -/usr/bin/ranlib ../../../../lib/libmdrunutility-test-shared.a -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 71%] Built target mdrunutility-test-shared -/usr/bin/make -f src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build.make src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/pbcutil/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pbcutil/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/DependInfo.cmake --color= Scanning dependencies of target pbcutil-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build.make src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security 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-fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/bitmask128.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/coordinatetransformation.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/layouts.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/layouts.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfittingamplitudelookup.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/pbcutil/tests/pbcenums.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/leapfrogtestrunners.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settle.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settletestdata.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem 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-I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/mdspan.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/mdspan.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd 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CMakeFiles/utility-test.dir/cstringutil.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/cstringutil.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat 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-fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -P CMakeFiles/mdrun_test_infrastructure.dir/cmake_clean_target.cmake +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun_test_infrastructure.dir/link.txt --verbose=1 +/usr/bin/ar qc ../../../../lib/libmdrun_test_infrastructure.a CMakeFiles/mdrun_test_infrastructure.dir/energyreader.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/energycomparison.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o 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/build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/fixedcapacityvector.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/simulationsignal.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/pbcutil/tests/pbcenums.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/helpmanager.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extents.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/extents.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 71%] Built target onlinehelp-test +[ 70%] Built target domdec-test /usr/bin/make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/restraint/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/restraint/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/updategroups.cpp Scanning dependencies of target restraintpotential-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/restraintpotential-test.dir/manager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/restraint/tests/manager.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/inmemoryserializer.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfit.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/densityfit.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/keyvaluetreeserializer.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/gammadistribution.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/keyvaluetreetransform.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/testasserts_tests.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/updategroupscog.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/filenameoption.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/tables/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tables/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread Scanning dependencies of target table-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tables/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/tables/tests/splinetable.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/filenameoptionmanager.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 71%] Built target restraintpotential-test +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constrtestdata.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pbcutil/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pbcutil-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pbcutil-test.dir/pbc.cpp.o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pbcutil-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/taskassignment/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/taskassignment/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake --color= -Scanning dependencies of target taskassignment-test -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/taskassignment/tests/usergpuids.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/logger.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/logger.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied_forces-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied_forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 72%] Built target applied_forces-test +[ 70%] Built target restraintpotential-test +Scanning dependencies of target taskassignment-test /usr/bin/make -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/depend +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/topology/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/DependInfo.cmake --color= -Scanning dependencies of target topology-test +/usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/exclusionblocks.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests/exclusionblocks.cpp -cd 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-I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/mutex.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/mutex.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 74%] Built target mdlib-test -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 74%] Built target gpu_utils-test +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/taskassignment/tests/usergpuids.cpp +[ 70%] Built target pbcutil-test /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/pulling/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pulling/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake --color= +Scanning dependencies of target topology-test +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' Scanning dependencies of target pull-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/exclusionblocks.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests/exclusionblocks.cpp /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pull-test.dir/pull.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/pulling/tests/pull.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/testhardwarecontexts.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/exponentialmovingaverage.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/seed.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/seed.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/gammadistribution.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/applied_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied_forces-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied_forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extensions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/extensions.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/helpwritercontext.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/arrayref.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 74%] Built target taskassignment-test +[ 71%] Built target applied_forces-test /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/awh/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake --color= Scanning dependencies of target awh-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/bias.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests/bias.cpp -Scanning dependencies of target simd-test -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/bootstrap_loadstore.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests/biasstate.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/repeatingsection.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/xvgtest_tests.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmesolvetest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/mtop.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests/mtop.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constrtestrunners.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfit.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/densityfit.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/layouts.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/layouts.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs.so.5.0.0 ../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../lib/libgtest.so -lpthread cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +[ 72%] Built target testutils-test +/usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 74%] Built target pull-test +[ 72%] Built target pull-test /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/compat/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake --color= +Scanning dependencies of target simd-test +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build Scanning dependencies of target compat-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/bootstrap_loadstore.cpp +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -Wno-unused-member-function -o CMakeFiles/compat-test.dir/optional.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests/optional.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/tabulatednormaldistribution.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdspan-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o CMakeFiles/mdspan-test.dir/extents.cpp.o CMakeFiles/mdspan-test.dir/extensions.cpp.o CMakeFiles/mdspan-test.dir/layouts.cpp.o CMakeFiles/mdspan-test.dir/mdspan.cpp.o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdspan-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/base.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/base.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/ebin.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/ebin.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/symtab.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests/symtab.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/normaldistribution.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 74%] Built target mdspan-test +[ 72%] Built target onlinehelp-test /usr/bin/make -f src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build.make src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxana/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/DependInfo.cmake --color= @@ -5703,22 +5669,35 @@ /usr/bin/make -f src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build.make src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/entropy.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxana/tests/entropy.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/mdspan.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/mdspan.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxana/tests/gmx_traj.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/base.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/base.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/filenameoption.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/energyoutput.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 74%] Built target ewald-test +[ 72%] Built target taskassignment-test /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp Scanning dependencies of target pdb2gmx3-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=1 -DCHARMM=1 -DGMX_DOUBLE=0 -DGROMOS=0 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/pdb2gmx.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/gausstransform.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/gausstransform.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/seed.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/seed.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxana/tests/gmx_mindist.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/topology/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/topology-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/topology-test.dir/exclusionblocks.cpp.o CMakeFiles/topology-test.dir/mtop.cpp.o CMakeFiles/topology-test.dir/symtab.cpp.o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/topology-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests/biasstate.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 75%] Built target topology-test +[ 72%] Built target gpu_utils-test /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/DependInfo.cmake --color= @@ -5727,21 +5706,10 @@ /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=0 -DGROMOS=1 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/pdb2gmx.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxana/tests/gmx_traj.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfittingforce.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/densityfittingforce.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/grid.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests/grid.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/invertmatrix.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/matrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/matrix.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxana/tests/gmx_mindist.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=0 -DGROMOS=1 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/threefry.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/threefry.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tables/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmesplinespreadtest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/dofit.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/dofit.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 75%] Built target awh-test +[ 74%] Built target topology-test /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/DependInfo.cmake --color= @@ -5750,16 +5718,22 @@ /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=0 -DGROMOS=0 -DHAVE_CONFIG_H -DOPLSAA=1 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/pdb2gmx.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/timeunitmanager.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/tabulatednormaldistribution.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxana/tests/gmx_msd.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/filenameoptionmanager.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/exponentialmovingaverage.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_floatingpoint.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tables/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/expanded.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/expanded.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxana-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/gmxana-test.dir/entropy.cpp.o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxana-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=1 -DCHARMM=1 -DGMX_DOUBLE=0 -DGROMOS=0 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/multidimarray.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/multidimarray.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests/pointers.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_floatingpoint.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/uniformintdistribution.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/threefry.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/threefry.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 75%] Built target table-test +[ 75%] Built target gmxana-test /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/DependInfo.cmake --color= @@ -5768,15 +5742,8 @@ /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/editconf.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxana/tests/gmx_msd.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/paddedvector.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/vectypes.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/treesupport.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/string_view.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests/string_view.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx3-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pdb2gmx3-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 75%] Built target pdb2gmx3-test +[ 75%] Built target table-test /usr/bin/make -f src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build.make src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/correlationfunctions/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/correlationfunctions/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/DependInfo.cmake --color= @@ -5785,13 +5752,11 @@ /usr/bin/make -f src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build.make src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/autocorr.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/correlationfunctions/tests/autocorr.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx2-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pdb2gmx2-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/uniformrealdistribution.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/grid.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests/grid.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx3-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pdb2gmx3-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 76%] Built target pdb2gmx2-test +[ 75%] Built target pdb2gmx3-test /usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/DependInfo.cmake --color= @@ -5800,39 +5765,33 @@ /usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests/datatest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxana-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/gmxana-test.dir/entropy.cpp.o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxana-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=0 -DGROMOS=1 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=0 -DGROMOS=0 -DHAVE_CONFIG_H -DOPLSAA=1 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/functions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/functions.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/correlationfunctions/tests/manyautocorrelation.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx1-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pdb2gmx1-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests/mock_datamodule.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx2-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pdb2gmx2-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 77%] Built target gmxana-test +[ 75%] Built target pdb2gmx1-test /usr/bin/make -f src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/build.make src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/option.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/option.cpp Scanning dependencies of target coordinateio-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/build.make src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/builder.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/builder.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp 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/build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests/mock_datamodule.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_vector_operations.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_math.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/genconf.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/genion.cpp -cd 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/build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_integer.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/expfit.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/correlationfunctions/tests/expfit.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/genrestr.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/genrestr.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 78%] Built target random-test +[ 75%] Built target awh-test /usr/bin/make -f src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build.make src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests/pointers.cpp make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/energyanalysis/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/energyanalysis/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/DependInfo.cmake --color= Scanning dependencies of target energyanalysis-test @@ -5840,12 +5799,9 @@ /usr/bin/make -f src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build.make src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/energyanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/energyanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/energyanalysis/tests/legacyenergy.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/gpp_atomtype.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx1-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pdb2gmx1-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/gpp_bond_atomtype.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/leapfrog.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 78%] Built target pdb2gmx1-test +[ 76%] Built target pdb2gmx2-test /usr/bin/make -f src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build.make src/gromacs/tools/tests/CMakeFiles/tool-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/tools/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tools/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tools/tests/CMakeFiles/tool-test.dir/DependInfo.cmake --color= @@ -5854,45 +5810,59 @@ /usr/bin/make -f src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build.make src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tools/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/tool-test.dir/dump.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/tools/tests/dump.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/insert_molecules.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/genconf.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/uniformintdistribution.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_floatingpoint_util.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/correlationfunctions/tests/correlationdataset.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmetestcommon.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/optionsassigner.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/expfit.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/correlationfunctions/tests/expfit.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/genion.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/energyanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/energyanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/outputadaptercontainer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/outputadaptercontainer.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tools/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/tool-test.dir/report_methods.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/tools/tests/report_methods.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/string_view.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests/string_view.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/energyanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/energyanalysis-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/energyanalysis-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdspan/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdspan-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o CMakeFiles/mdspan-test.dir/extents.cpp.o CMakeFiles/mdspan-test.dir/extensions.cpp.o CMakeFiles/mdspan-test.dir/layouts.cpp.o CMakeFiles/mdspan-test.dir/mdspan.cpp.o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdspan-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/testhardwarecontexts.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 80%] Built target options-test +[ 77%] Built target energyanalysis-test /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/energyanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/energyanalysis-test.dir/link.txt --verbose=1 Scanning dependencies of target fileio-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/outputadaptercontainer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/outputadaptercontainer.cpp make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/confio.cpp -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/energyanalysis-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/uniformrealdistribution.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 81%] Built target energyanalysis-test +[ 77%] Built target mdspan-test /usr/bin/make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/genrestr.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/genrestr.cpp Scanning dependencies of target selection-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/indexutil.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/indexutil.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/readir.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/gausstransform.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/gausstransform.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tools/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/tool-test.dir/trjconv.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/tools/tests/trjconv.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/outputadapters.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/outputadapters.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/gpp_atomtype.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/leapfrogtestdata.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/correlations-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/correlations-test.dir/autocorr.cpp.o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o CMakeFiles/correlations-test.dir/expfit.cpp.o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/correlations-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4_floatingpoint.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/solvate.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/topdirs.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 81%] Built target correlations-test +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 +[ 77%] Built target correlations-test +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/DependInfo.cmake --color= @@ -5901,9 +5871,8 @@ /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-modules-test.dir/densityfittingmodule.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/densityfittingmodule.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4_vector_operations.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tools/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/tool-test.dir/trjconv.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/tools/tests/trjconv.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +[ 77%] Built target ewald-test /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/DependInfo.cmake --color= @@ -5912,10 +5881,20 @@ /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/tpitest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/utility-test.dir/alignedallocator.cpp.o CMakeFiles/utility-test.dir/arrayref.cpp.o CMakeFiles/utility-test.dir/bitmask32.cpp.o CMakeFiles/utility-test.dir/bitmask64.cpp.o CMakeFiles/utility-test.dir/bitmask128.cpp.o CMakeFiles/utility-test.dir/cstringutil.cpp.o CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o CMakeFiles/utility-test.dir/logger.cpp.o CMakeFiles/utility-test.dir/mutex.cpp.o CMakeFiles/utility-test.dir/path.cpp.o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o CMakeFiles/utility-test.dir/stringutil.cpp.o CMakeFiles/utility-test.dir/textreader.cpp.o CMakeFiles/utility-test.dir/textwriter.cpp.o CMakeFiles/utility-test.dir/typetraits.cpp.o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4_math.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_vector_operations.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/filemd5.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_math.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-modules-test.dir/interactiveMD.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/interactiveMD.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/leapfrogtestrunners.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tools/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/gpp_bond_atomtype.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests && /usr/bin/cmake -P CMakeFiles/analysisdata-test-shared.dir/cmake_clean_target.cmake +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysisdata-test-shared.dir/link.txt --verbose=1 +/usr/bin/ar qc ../../../../lib/libanalysisdata-test-shared.a CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o +/usr/bin/ranlib ../../../../lib/libanalysisdata-test-shared.a +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +[ 77%] Built target analysisdata-test-shared /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/DependInfo.cmake --color= @@ -5924,50 +5903,73 @@ /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/dispersion_correction.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/dispersion_correction.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/nbsearch.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/nbsearch.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tools/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/tool-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/tool-test.dir/dump.cpp.o CMakeFiles/tool-test.dir/report_methods.cpp.o CMakeFiles/tool-test.dir/trjconv.cpp.o CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/tool-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-tpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 83%] Built target utility-test +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/mrcserializer.cpp +[ 77%] Built target tool-test +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/mrcdensitymap.cpp +[ 78%] Built target random-test /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfittingforce.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/densityfittingforce.cpp Scanning dependencies of target mdrun-output-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-output-test.dir/compressed_x_output.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/compressed_x_output.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/scalar.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxpreprocess-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o CMakeFiles/gmxpreprocess-test.dir/genrestr.cpp.o CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxpreprocess-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-modules-test.dir/interactiveMD.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/interactiveMD.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/compat-test.dir/optional.cpp.o CMakeFiles/compat-test.dir/pointers.cpp.o CMakeFiles/compat-test.dir/string_view.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/repeatingsection.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/orires.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/orires.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settle.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-tpi-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o CMakeFiles/mdrun-tpi-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-tpi-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/pmetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/pmetest.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 84%] Built target gmxpreprocess-test +[ 78%] Built target mdrun-tpi-test /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/mimic.cpp Scanning dependencies of target mdrun-non-integrator-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/minimize.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/minimize.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/scalar_util.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/insert_molecules.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/invertmatrix.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-output-test.dir/helpwriting.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/helpwriting.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/mrcdensitymapheader.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/readir.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-output-test.dir/outputfiles.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/outputfiles.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-modules-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/requirements.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/requirements.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/compat-test.dir/optional.cpp.o CMakeFiles/compat-test.dir/pointers.cpp.o CMakeFiles/compat-test.dir/string_view.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/simulator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/simulator.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/readinp.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/matrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/matrix.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 84%] Built target compat-test +[ 78%] Built target compat-test /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/poscalc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/poscalc.cpp Scanning dependencies of target mdrun-mpi-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/domain_decomposition.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/orires.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/orires.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests && /usr/bin/cmake -P CMakeFiles/analysisdata-test-shared.dir/cmake_clean_target.cmake -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysisdata-test-shared.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../../../lib/libanalysisdata-test-shared.a CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -/usr/bin/ranlib ../../../../lib/libanalysisdata-test-shared.a +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-modules-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-modules-test.dir/densityfittingmodule.cpp.o CMakeFiles/mdrun-modules-test.dir/interactiveMD.cpp.o CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o CMakeFiles/mdrun-modules-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-modules-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 84%] Built target analysisdata-test-shared +[ 78%] Built target mdrun-modules-test /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/DependInfo.cmake --color= @@ -5976,23 +5978,28 @@ /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-io-test.dir/exactcontinuation.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/exactcontinuation.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/scalar_math.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/mrcserializer.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/pmetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/pmetest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src 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-DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/setatoms.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/setatoms.cpp +cd 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-I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/nonbonded_bench.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settletestrunners.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/shake.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/trajectory_writing.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/multidimarray.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/multidimarray.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/filemd5.cpp.o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/setbothtime.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/simulationsignal.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/normalmodes.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/normalmodes.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 84%] Built target tool-test +[ 80%] Built target fileio-test /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/DependInfo.cmake --color= @@ -6001,8 +6008,23 @@ /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-coordination-test.dir/periodicactions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/periodicactions.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/topdirs.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/bitmask32.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/setstarttime.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-output-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/treesupport.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-io-test.dir/grompp.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/grompp.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/updategroups.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external 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-DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/mimic.cpp +cd 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/usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/updategroupscog.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/rerun.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 84%] Built target mdrun-tpi-test +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/paddedvector.cpp +[ 81%] Built target mdrun-output-test /usr/bin/make -f src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/build.make src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" 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-I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/restraint.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/restraint.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ 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/build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-io-test.dir/initialconstraints.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/initialconstraints.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 84%] Built target mdrun-modules-test +[ 82%] Built target gmxpreprocess-test /usr/bin/make -f src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/build.make src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/depend 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-I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/nonbonded_bench.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 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/usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/tabulated_bonded_interactions.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 87%] Built target math-test +[ 83%] Built target mdrun-mpi-coordination-test +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/simple_mdrun.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/simple_mdrun.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/coordinateio-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/coordinateio-test.dir/builder.cpp.o CMakeFiles/coordinateio-test.dir/outputadaptercontainer.cpp.o CMakeFiles/coordinateio-test.dir/outputadapters.cpp.o CMakeFiles/coordinateio-test.dir/requirements.cpp.o CMakeFiles/coordinateio-test.dir/setatoms.cpp.o CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o CMakeFiles/coordinateio-test.dir/settimestep.cpp.o CMakeFiles/coordinateio-test.dir/testmodule.cpp.o CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/coordinateio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/multisimtest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4_vector_operations.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +[ 83%] Built target mdrun-test /usr/bin/make -f src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/build.make src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/api/cpp/workflow/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/workflow/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/DependInfo.cmake --color= +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' Scanning dependencies of target workflow-details-test +[ 84%] Built target coordinateio-test +/usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/build.make src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/workflow/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/workflow/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/workflow/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/src/api/cpp -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/workflow-details-test.dir/workflow.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/workflow/tests/workflow.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/runner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/runner.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/normalmodes.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/normalmodes.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/status.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/status.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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/build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/stopsignaler.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/stopsignaler.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/readinp.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/poscalc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/poscalc.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/workflow/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/workflow/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/workflow/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/src/api/cpp -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/workflow-details-mpi-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/mimic.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/system.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/system.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/fileioxdrserializer.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-io-test.dir/initialconstraints.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/initialconstraints.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/version.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/version.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/workflow/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/workflow-details-mpi-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/workflow-details-mpi-test.dir/workflow.cpp.o CMakeFiles/workflow-details-mpi-test.dir/__/__/__/__/testutils/unittest_main.cpp.o ../../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../../bin/workflow-details-mpi-test ../../../../../lib/libtestutils.a ../../../../../lib/libgmxapi.so.0.1.0 ../../../../../lib/libmdrun_test_infrastructure.a ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../../lib/libgmock.so ../../../../../lib/libgtest.so -lpthread -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 87%] Built target workflow-details-mpi-test -/usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/workflow/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/workflow/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/workflow/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/src/api/cpp -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/workflow-details-test.dir/workflow.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/workflow/tests/workflow.cpp Scanning dependencies of target commandline-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/workflow/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/workflow/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/workflow/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/src/api/cpp -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/workflow-details-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/trajectory_writing.cpp -cd 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-fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/workflow-details-mpi-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/pmetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/pmetest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/scalar.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/scalar_util.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/workflow/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/workflow-details-mpi-test.dir/link.txt --verbose=1 +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/workflow-details-mpi-test.dir/workflow.cpp.o CMakeFiles/workflow-details-mpi-test.dir/__/__/__/__/testutils/unittest_main.cpp.o ../../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../../bin/workflow-details-mpi-test ../../../../../lib/libtestutils.a ../../../../../lib/libgmxapi.so.0.1.0 ../../../../../lib/libmdrun_test_infrastructure.a ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../../lib/libgmock.so ../../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 87%] Built target mdrun-mpi-coordination-test +[ 85%] Built target options-test /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake --color= @@ -6110,10 +6130,9 @@ /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests/threadaffinity_mpi.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-output-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/stopsignaler.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/stopsignaler.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/workflow/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/workflow/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/workflow/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/src/api/cpp -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/workflow-details-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 88%] Built target workflow-details-test +[ 85%] Built target workflow-details-mpi-test /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake --color= @@ -6122,23 +6141,38 @@ /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests/threadaffinity.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/multisim.cpp -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/filemd5.cpp.o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/cstringutil.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/cstringutil.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/workflow/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/workflow-details-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/workflow-details-test.dir/workflow.cpp.o CMakeFiles/workflow-details-test.dir/__/__/__/__/testutils/unittest_main.cpp.o ../../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../../bin/workflow-details-test ../../../../../lib/libtestutils.a ../../../../../lib/libgmxapi.so.0.1.0 ../../../../../lib/libmdrun_test_infrastructure.a ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../../lib/libgmock.so ../../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/runner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/runner.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/runner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/runner.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-io-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 88%] Built target mdrun-test +[ 87%] Built target workflow-details-test /usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-non-integrator-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-non-integrator-test.dir/minimize.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/normalmodes.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/simple_mdrun.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-non-integrator-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread Scanning dependencies of target analysisdata-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests/analysisdata.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectioncollection.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/selectioncollection.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-io-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-io-test.dir/link.txt --verbose=1 +[ 87%] Built target mdrun-non-integrator-test +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/stopsignaler.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/stopsignaler.cpp +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-io-test.dir/exactcontinuation.cpp.o CMakeFiles/mdrun-io-test.dir/grompp.cpp.o CMakeFiles/mdrun-io-test.dir/initialconstraints.cpp.o CMakeFiles/mdrun-io-test.dir/termination.cpp.o CMakeFiles/mdrun-io-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-io-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/stopsignaler.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/stopsignaler.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/replicaexchange.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/defaultinitializationallocator.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 89%] Built target fileio-test +[ 88%] Built target mdrun-io-test /usr/bin/make -f src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build.make src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/DependInfo.cmake --color= @@ -6147,104 +6181,105 @@ /usr/bin/make -f src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build.make src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/moduletest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/scalar_math.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +[ 89%] Built target mdrunutility-test +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectionoption.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/selectionoption.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/toputils.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/toputils.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/vectypes.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG 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-I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/fixedcapacityvector.cpp +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 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/build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/clustsize.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxapi-mpi-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/gmxapi-mpi-test.dir/restraint.cpp.o CMakeFiles/gmxapi-mpi-test.dir/status.cpp.o CMakeFiles/gmxapi-mpi-test.dir/system.cpp.o CMakeFiles/gmxapi-mpi-test.dir/version.cpp.o CMakeFiles/gmxapi-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/gmxapi-mpi-test.dir/runner.cpp.o CMakeFiles/gmxapi-mpi-test.dir/stopsignaler.cpp.o ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/gmxapi-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgmxapi.so.0.1.0 ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/rerun.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 89%] Built target gmxapi-mpi-test -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/arraydata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests/arraydata.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/multisimtest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-output-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-output-test.dir/compressed_x_output.cpp.o CMakeFiles/mdrun-output-test.dir/helpwriting.cpp.o CMakeFiles/mdrun-output-test.dir/outputfiles.cpp.o CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o CMakeFiles/mdrun-output-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-output-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/simple_mdrun.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/simple_mdrun.cpp +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/gmxapi-mpi-test.dir/restraint.cpp.o CMakeFiles/gmxapi-mpi-test.dir/status.cpp.o CMakeFiles/gmxapi-mpi-test.dir/system.cpp.o CMakeFiles/gmxapi-mpi-test.dir/version.cpp.o CMakeFiles/gmxapi-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/gmxapi-mpi-test.dir/runner.cpp.o CMakeFiles/gmxapi-mpi-test.dir/stopsignaler.cpp.o ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/gmxapi-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgmxapi.so.0.1.0 ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread +[ 89%] Built target mdrunutility-mpi-test +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/inmemoryserializer.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 90%] Built target mdrun-output-test -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/average.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests/average.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/setbothtime.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/pmetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/pmetest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/clustsize.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/replicaexchange.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/histogram.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests/histogram.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-io-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-io-test.dir/exactcontinuation.cpp.o CMakeFiles/mdrun-io-test.dir/grompp.cpp.o CMakeFiles/mdrun-io-test.dir/initialconstraints.cpp.o CMakeFiles/mdrun-io-test.dir/termination.cpp.o CMakeFiles/mdrun-io-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-io-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +[ 90%] Built target mdrun-mpi-test +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/keyvaluetreeserializer.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxapi-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/gmxapi-test.dir/restraint.cpp.o CMakeFiles/gmxapi-test.dir/status.cpp.o CMakeFiles/gmxapi-test.dir/system.cpp.o CMakeFiles/gmxapi-test.dir/version.cpp.o CMakeFiles/gmxapi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/gmxapi-test.dir/runner.cpp.o CMakeFiles/gmxapi-test.dir/stopsignaler.cpp.o ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/gmxapi-test ../../../../lib/libtestutils.a ../../../../lib/libgmxapi.so.0.1.0 ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 91%] Built target mdrun-io-test -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/lifetime.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests/lifetime.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/setstarttime.cpp +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/gmxapi-test.dir/restraint.cpp.o CMakeFiles/gmxapi-test.dir/status.cpp.o CMakeFiles/gmxapi-test.dir/system.cpp.o CMakeFiles/gmxapi-test.dir/version.cpp.o CMakeFiles/gmxapi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/gmxapi-test.dir/runner.cpp.o CMakeFiles/gmxapi-test.dir/stopsignaler.cpp.o ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/gmxapi-test ../../../../lib/libtestutils.a ../../../../lib/libgmxapi.so.0.1.0 ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread +[ 90%] Built target gmxapi-mpi-test +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/keyvaluetreetransform.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 92%] Built target gmxapi-test -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +[ 91%] Built target gmxapi-test +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlineparser.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/logger.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/logger.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/cmdlinerunner.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/settimestep.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/settimestep.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/angle.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 92%] Built target mdrunutility-mpi-test -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/mutex.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/mutex.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 94%] Built target mdrunutility-test -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/testmodule.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/testmodule.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlineparser.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +[ 92%] Built target simd-test +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong 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/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/average.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests/average.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/histogram.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests/histogram.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/lifetime.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests/lifetime.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/pargs.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/coordinateio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/coordinateio-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/coordinateio-test.dir/builder.cpp.o CMakeFiles/coordinateio-test.dir/outputadaptercontainer.cpp.o CMakeFiles/coordinateio-test.dir/outputadapters.cpp.o CMakeFiles/coordinateio-test.dir/requirements.cpp.o CMakeFiles/coordinateio-test.dir/setatoms.cpp.o CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o CMakeFiles/coordinateio-test.dir/settimestep.cpp.o CMakeFiles/coordinateio-test.dir/testmodule.cpp.o CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/coordinateio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 95%] Built target mdrun-mpi-test +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/extract_cluster.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/extract_cluster.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 96%] Built target coordinateio-test -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectionoption.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/selectionoption.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/freevolume.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/pairdist.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/rdf.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-non-integrator-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-non-integrator-test.dir/minimize.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/normalmodes.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/simple_mdrun.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-non-integrator-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/sasa.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 96%] Built target mdrun-non-integrator-test -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/toputils.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/toputils.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/select.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/topologyinformation.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/trajectory.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/unionfind.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/filenm.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +[ 95%] Built target commandline-test +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/selection-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/selection-test.dir/indexutil.cpp.o CMakeFiles/selection-test.dir/nbsearch.cpp.o CMakeFiles/selection-test.dir/poscalc.cpp.o CMakeFiles/selection-test.dir/selectioncollection.cpp.o CMakeFiles/selection-test.dir/selectionoption.cpp.o CMakeFiles/selection-test.dir/toputils.cpp.o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/selection-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/analysisdata/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysisdata-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o CMakeFiles/analysisdata-test.dir/arraydata.cpp.o CMakeFiles/analysisdata-test.dir/average.cpp.o CMakeFiles/analysisdata-test.dir/histogram.cpp.o CMakeFiles/analysisdata-test.dir/lifetime.cpp.o CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/analysisdata-test ../../../../lib/libtestutils.a ../../../../lib/libanalysisdata-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +[ 96%] Built target selection-test +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' [ 96%] Built target analysisdata-test -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/filenm.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/utility-test.dir/alignedallocator.cpp.o CMakeFiles/utility-test.dir/arrayref.cpp.o CMakeFiles/utility-test.dir/bitmask32.cpp.o CMakeFiles/utility-test.dir/bitmask64.cpp.o CMakeFiles/utility-test.dir/bitmask128.cpp.o CMakeFiles/utility-test.dir/cstringutil.cpp.o CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o CMakeFiles/utility-test.dir/logger.cpp.o CMakeFiles/utility-test.dir/mutex.cpp.o CMakeFiles/utility-test.dir/path.cpp.o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o CMakeFiles/utility-test.dir/stringutil.cpp.o CMakeFiles/utility-test.dir/textreader.cpp.o CMakeFiles/utility-test.dir/textwriter.cpp.o CMakeFiles/utility-test.dir/typetraits.cpp.o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 97%] Built target commandline-test +[ 98%] Built target utility-test cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/trajectoryanalysis-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o CMakeFiles/trajectoryanalysis-test.dir/convert_trj.cpp.o CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o CMakeFiles/trajectoryanalysis-test.dir/extract_cluster.cpp.o CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/trajectoryanalysis-test ../../../../lib/libtestutils.a ../../../../lib/libanalysisdata-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 98%] Built target trajectoryanalysis-test -cd /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/selection-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/selection-test.dir/indexutil.cpp.o CMakeFiles/selection-test.dir/nbsearch.cpp.o CMakeFiles/selection-test.dir/poscalc.cpp.o CMakeFiles/selection-test.dir/selectioncollection.cpp.o CMakeFiles/selection-test.dir/selectionoption.cpp.o CMakeFiles/selection-test.dir/toputils.cpp.o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/selection-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[100%] Built target selection-test +[100%] Built target trajectoryanalysis-test /usr/bin/make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/CMakeFiles/tests.dir/DependInfo.cmake --color= @@ -6280,7 +6315,7 @@ 1: [----------] Global test environment set-up. 1: [----------] 10 tests from InteractiveTestHelperTest 1: [ RUN ] InteractiveTestHelperTest.ChecksSimpleSession -1: [ OK ] InteractiveTestHelperTest.ChecksSimpleSession (0 ms) +1: [ OK ] InteractiveTestHelperTest.ChecksSimpleSession (1 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline 1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline (0 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput @@ -6290,20 +6325,20 @@ 1: [ RUN ] InteractiveTestHelperTest.DetectsIncorrectOutput 1: [ OK ] InteractiveTestHelperTest.DetectsIncorrectOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingOutput -1: [ OK ] InteractiveTestHelperTest.DetectsMissingOutput (1 ms) +1: [ OK ] InteractiveTestHelperTest.DetectsMissingOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingFinalOutput -1: [ OK ] InteractiveTestHelperTest.DetectsMissingFinalOutput (0 ms) +1: [ OK ] InteractiveTestHelperTest.DetectsMissingFinalOutput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsExtraOutput 1: [ OK ] InteractiveTestHelperTest.DetectsExtraOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingInput -1: [ OK ] InteractiveTestHelperTest.DetectsMissingInput (9 ms) +1: [ OK ] InteractiveTestHelperTest.DetectsMissingInput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsExtraInput 1: [ OK ] InteractiveTestHelperTest.DetectsExtraInput (0 ms) -1: [----------] 10 tests from InteractiveTestHelperTest (11 ms total) +1: [----------] 10 tests from InteractiveTestHelperTest (3 ms total) 1: 1: [----------] 34 tests from ReferenceDataTest 1: [ RUN ] ReferenceDataTest.HandlesSimpleData -1: [ OK ] ReferenceDataTest.HandlesSimpleData (0 ms) +1: [ OK ] ReferenceDataTest.HandlesSimpleData (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesFloatingPointData 1: [ OK ] ReferenceDataTest.HandlesFloatingPointData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesPresenceChecks @@ -6311,15 +6346,15 @@ 1: [ RUN ] ReferenceDataTest.HandlesStringBlockData 1: [ OK ] ReferenceDataTest.HandlesStringBlockData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVectorData -1: [ OK ] ReferenceDataTest.HandlesVectorData (1 ms) +1: [ OK ] ReferenceDataTest.HandlesVectorData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceData 1: [ OK ] ReferenceDataTest.HandlesSequenceData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceOfCustomData 1: [ OK ] ReferenceDataTest.HandlesSequenceOfCustomData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesIncorrectData -1: [ OK ] ReferenceDataTest.HandlesIncorrectData (0 ms) +1: [ OK ] ReferenceDataTest.HandlesIncorrectData (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesIncorrectDataType -1: [ OK ] ReferenceDataTest.HandlesIncorrectDataType (1 ms) +1: [ OK ] ReferenceDataTest.HandlesIncorrectDataType (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMissingData 1: [ OK ] ReferenceDataTest.HandlesMissingData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedData @@ -6327,11 +6362,11 @@ 1: [ RUN ] ReferenceDataTest.HandlesUncheckedDataInSequence 1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInSequence (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedDataInCompound -1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInCompound (0 ms) +1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInCompound (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesAnys 1: [ OK ] ReferenceDataTest.HandlesAnys (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTree -1: [ OK ] ReferenceDataTest.HandlesKeyValueTree (1 ms) +1: [ OK ] ReferenceDataTest.HandlesKeyValueTree (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeExtraKey 1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeExtraKey (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeMissingKey @@ -6341,7 +6376,7 @@ 1: [ RUN ] ReferenceDataTest.HandlesAnysWithIncorrectType 1: [ OK ] ReferenceDataTest.HandlesAnysWithIncorrectType (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMissingReferenceDataFile -1: [ OK ] ReferenceDataTest.HandlesMissingReferenceDataFile (1 ms) +1: [ OK ] ReferenceDataTest.HandlesMissingReferenceDataFile (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSpecialCharactersInStrings 1: [ OK ] ReferenceDataTest.HandlesSpecialCharactersInStrings (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace @@ -6359,9 +6394,9 @@ 1: [ RUN ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds 1: [ OK ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesReadingValues -1: [ OK ] ReferenceDataTest.HandlesReadingValues (0 ms) +1: [ OK ] ReferenceDataTest.HandlesReadingValues (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges -1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges (1 ms) +1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges @@ -6369,8 +6404,8 @@ 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries -1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries (0 ms) -1: [----------] 34 tests from ReferenceDataTest (6 ms total) +1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries (1 ms) +1: [----------] 34 tests from ReferenceDataTest (7 ms total) 1: 1: [----------] 7 tests from FloatingPointDifferenceTest 1: [ RUN ] FloatingPointDifferenceTest.HandlesEqualValues @@ -6387,7 +6422,7 @@ 1: [ OK ] FloatingPointDifferenceTest.HandlesUlpDifferenceAcrossZero (0 ms) 1: [ RUN ] FloatingPointDifferenceTest.HandlesNaN 1: [ OK ] FloatingPointDifferenceTest.HandlesNaN (0 ms) -1: [----------] 7 tests from FloatingPointDifferenceTest (1 ms total) +1: [----------] 7 tests from FloatingPointDifferenceTest (0 ms total) 1: 1: [----------] 4 tests from FloatingPointToleranceTest 1: [ RUN ] FloatingPointToleranceTest.UlpTolerance @@ -6404,17 +6439,17 @@ 1: [ RUN ] XvgTests.CreateFile 1: [ OK ] XvgTests.CreateFile (0 ms) 1: [ RUN ] XvgTests.CheckMissing -1: [ OK ] XvgTests.CheckMissing (9 ms) +1: [ OK ] XvgTests.CheckMissing (1 ms) 1: [ RUN ] XvgTests.CheckExtra 1: [ OK ] XvgTests.CheckExtra (0 ms) 1: [ RUN ] XvgTests.ReadIncorrect 1: [ OK ] XvgTests.ReadIncorrect (0 ms) -1: [----------] 4 tests from XvgTests (9 ms total) +1: [----------] 4 tests from XvgTests (1 ms total) 1: 1: [----------] Global test environment tear-down -1: [==========] 59 tests from 5 test cases ran. (27 ms total) +1: [==========] 59 tests from 5 test cases ran. (11 ms total) 1: [ PASSED ] 59 tests. - 1/54 Test #1: TestUtilsUnitTests .................. Passed 0.07 sec + 1/54 Test #1: TestUtilsUnitTests .................. Passed 0.03 sec test 2 Start 2: TestUtilsMpiUnitTests @@ -6424,13 +6459,13 @@ 2: [----------] Global test environment set-up. 2: [----------] 1 test from MpiSelfTest 2: [ RUN ] MpiSelfTest.Runs -2: [ OK ] MpiSelfTest.Runs (15 ms) -2: [----------] 1 test from MpiSelfTest (15 ms total) +2: [ OK ] MpiSelfTest.Runs (1 ms) +2: [----------] 1 test from MpiSelfTest (1 ms total) 2: 2: [----------] Global test environment tear-down -2: [==========] 1 test from 1 test case ran. (15 ms total) +2: [==========] 1 test from 1 test case ran. (1 ms total) 2: [ PASSED ] 1 test. - 2/54 Test #2: TestUtilsMpiUnitTests ............... Passed 0.04 sec + 2/54 Test #2: TestUtilsMpiUnitTests ............... Passed 0.01 sec test 3 Start 3: UtilityUnitTests @@ -6442,14 +6477,14 @@ 3: [ RUN ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment 3: [ OK ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment (0 ms) 3: [ RUN ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment -3: [ OK ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment (0 ms) +3: [ OK ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment (1 ms) 3: [ RUN ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment 3: [ OK ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment (0 ms) 3: [ RUN ] AllocatorTest/0.Move 3: [ OK ] AllocatorTest/0.Move (0 ms) 3: [ RUN ] AllocatorTest/0.StatelessAllocatorUsesNoMemory 3: [ OK ] AllocatorTest/0.StatelessAllocatorUsesNoMemory (0 ms) -3: [----------] 5 tests from AllocatorTest/0 (0 ms total) +3: [----------] 5 tests from AllocatorTest/0 (1 ms total) 3: 3: [----------] 5 tests from AllocatorTest/1, where TypeParam = gmx::Allocator 3: [ RUN ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment @@ -6468,14 +6503,14 @@ 3: [ RUN ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment 3: [ OK ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment (0 ms) 3: [ RUN ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment -3: [ OK ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment (1 ms) +3: [ OK ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment (0 ms) 3: [ RUN ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment 3: [ OK ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment (0 ms) 3: [ RUN ] AllocatorTest/2.Move 3: [ OK ] AllocatorTest/2.Move (0 ms) 3: [ RUN ] AllocatorTest/2.StatelessAllocatorUsesNoMemory 3: [ OK ] AllocatorTest/2.StatelessAllocatorUsesNoMemory (0 ms) -3: [----------] 5 tests from AllocatorTest/2 (1 ms total) +3: [----------] 5 tests from AllocatorTest/2 (0 ms total) 3: 3: [----------] 5 tests from AllocatorTest/3, where TypeParam = gmx::Allocator 3: [ RUN ] AllocatorTest/3.AllocatorAlignAllocatesWithAlignment @@ -6507,14 +6542,14 @@ 3: [ RUN ] AllocatorTest/5.AllocatorAlignAllocatesWithAlignment 3: [ OK ] AllocatorTest/5.AllocatorAlignAllocatesWithAlignment (0 ms) 3: [ RUN ] AllocatorTest/5.VectorAllocatesAndResizesWithAlignment -3: [ OK ] AllocatorTest/5.VectorAllocatesAndResizesWithAlignment (0 ms) +3: [ OK ] AllocatorTest/5.VectorAllocatesAndResizesWithAlignment (1 ms) 3: [ RUN ] AllocatorTest/5.VectorAllocatesAndReservesWithAlignment 3: [ OK ] AllocatorTest/5.VectorAllocatesAndReservesWithAlignment (0 ms) 3: [ RUN ] AllocatorTest/5.Move 3: [ OK ] AllocatorTest/5.Move (0 ms) 3: [ RUN ] AllocatorTest/5.StatelessAllocatorUsesNoMemory 3: [ OK ] AllocatorTest/5.StatelessAllocatorUsesNoMemory (0 ms) -3: [----------] 5 tests from AllocatorTest/5 (0 ms total) +3: [----------] 5 tests from AllocatorTest/5 (1 ms total) 3: 3: [----------] 1 test from AllocatorUntypedTest 3: [ RUN ] AllocatorUntypedTest.Comparison @@ -6713,12 +6748,12 @@ 3: [ RUN ] ArrayRefTest/8.ConstructFromNonConstPointersWorks 3: [ OK ] ArrayRefTest/8.ConstructFromNonConstPointersWorks (0 ms) 3: [ RUN ] ArrayRefTest/8.ConstructFromVectorWorks -3: [ OK ] ArrayRefTest/8.ConstructFromVectorWorks (0 ms) +3: [ OK ] ArrayRefTest/8.ConstructFromVectorWorks (1 ms) 3: [ RUN ] ArrayRefTest/8.ConstructFromNonConstVectorWorks 3: [ OK ] ArrayRefTest/8.ConstructFromNonConstVectorWorks (0 ms) 3: [ RUN ] ArrayRefTest/8.ConstructFromStructFieldWithTemplateConstructorWorks 3: [ OK ] ArrayRefTest/8.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -3: [----------] 9 tests from ArrayRefTest/8 (0 ms total) +3: [----------] 9 tests from ArrayRefTest/8 (1 ms total) 3: 3: [----------] 9 tests from ArrayRefTest/9, where TypeParam = gmx::ArrayRef 3: [ RUN ] ArrayRefTest/9.MakeWithAssignmentWorks @@ -6764,7 +6799,7 @@ 3: 3: [----------] 9 tests from ArrayRefTest/11, where TypeParam = gmx::ArrayRef 3: [ RUN ] ArrayRefTest/11.MakeWithAssignmentWorks -3: [ OK ] ArrayRefTest/11.MakeWithAssignmentWorks (1 ms) +3: [ OK ] ArrayRefTest/11.MakeWithAssignmentWorks (0 ms) 3: [ RUN ] ArrayRefTest/11.MakeWithNonConstAssignmentWorks 3: [ OK ] ArrayRefTest/11.MakeWithNonConstAssignmentWorks (0 ms) 3: [ RUN ] ArrayRefTest/11.ConstructWithTemplateConstructorWorks @@ -6781,7 +6816,7 @@ 3: [ OK ] ArrayRefTest/11.ConstructFromNonConstVectorWorks (0 ms) 3: [ RUN ] ArrayRefTest/11.ConstructFromStructFieldWithTemplateConstructorWorks 3: [ OK ] ArrayRefTest/11.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -3: [----------] 9 tests from ArrayRefTest/11 (1 ms total) +3: [----------] 9 tests from ArrayRefTest/11 (0 ms total) 3: 3: [----------] 9 tests from ArrayRefTest/12, where TypeParam = gmx::ArrayRef 3: [ RUN ] ArrayRefTest/12.MakeWithAssignmentWorks @@ -6949,7 +6984,7 @@ 3: [ OK ] ArrayRefTest/19.ConstructFromNonConstVectorWorks (0 ms) 3: [ RUN ] ArrayRefTest/19.ConstructFromStructFieldWithTemplateConstructorWorks 3: [ OK ] ArrayRefTest/19.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -3: [----------] 9 tests from ArrayRefTest/19 (0 ms total) +3: [----------] 9 tests from ArrayRefTest/19 (1 ms total) 3: 3: [----------] 2 tests from CStringUtilityTest 3: [ RUN ] CStringUtilityTest.CaseInsensitiveComparison @@ -7005,10 +7040,10 @@ 3: [ RUN ] InMemorySerializerTest.SerializerExplicitEndianessSwap 3: [ OK ] InMemorySerializerTest.SerializerExplicitEndianessSwap (0 ms) 3: [ RUN ] InMemorySerializerTest.DeserializerExplicitEndianessSwap -3: [ OK ] InMemorySerializerTest.DeserializerExplicitEndianessSwap (1 ms) +3: [ OK ] InMemorySerializerTest.DeserializerExplicitEndianessSwap (0 ms) 3: [ RUN ] InMemorySerializerTest.SizeIsCorrect 3: [ OK ] InMemorySerializerTest.SizeIsCorrect (0 ms) -3: [----------] 5 tests from InMemorySerializerTest (1 ms total) +3: [----------] 5 tests from InMemorySerializerTest (0 ms total) 3: 3: [----------] 4 tests from KeyValueTreeSerializerTest 3: [ RUN ] KeyValueTreeSerializerTest.EmptyTree @@ -7018,14 +7053,14 @@ 3: [ RUN ] KeyValueTreeSerializerTest.ObjectWithArrays 3: [ OK ] KeyValueTreeSerializerTest.ObjectWithArrays (0 ms) 3: [ RUN ] KeyValueTreeSerializerTest.ObjectWithObjects -3: [ OK ] KeyValueTreeSerializerTest.ObjectWithObjects (0 ms) -3: [----------] 4 tests from KeyValueTreeSerializerTest (0 ms total) +3: [ OK ] KeyValueTreeSerializerTest.ObjectWithObjects (1 ms) +3: [----------] 4 tests from KeyValueTreeSerializerTest (1 ms total) 3: 3: [----------] 6 tests from TreeValueTransformTest 3: [ RUN ] TreeValueTransformTest.SimpleTransforms 3: [ OK ] TreeValueTransformTest.SimpleTransforms (0 ms) 3: [ RUN ] TreeValueTransformTest.SimpleTransformsCaseAndDashInsensitive -3: [ OK ] TreeValueTransformTest.SimpleTransformsCaseAndDashInsensitive (13 ms) +3: [ OK ] TreeValueTransformTest.SimpleTransformsCaseAndDashInsensitive (0 ms) 3: [ RUN ] TreeValueTransformTest.SimpleTransformsToObject 3: [ OK ] TreeValueTransformTest.SimpleTransformsToObject (0 ms) 3: [ RUN ] TreeValueTransformTest.ObjectFromString @@ -7034,7 +7069,7 @@ 3: [ OK ] TreeValueTransformTest.ObjectFromMultipleStrings (0 ms) 3: [ RUN ] TreeValueTransformTest.ScopedTransformRules 3: [ OK ] TreeValueTransformTest.ScopedTransformRules (0 ms) -3: [----------] 6 tests from TreeValueTransformTest (14 ms total) +3: [----------] 6 tests from TreeValueTransformTest (0 ms total) 3: 3: [----------] 1 test from TreeValueTransformErrorTest 3: [ RUN ] TreeValueTransformErrorTest.ConversionError @@ -7047,7 +7082,7 @@ 3: [ RUN ] LoggerTest.LogsToStream 3: [ OK ] LoggerTest.LogsToStream (0 ms) 3: [ RUN ] LoggerTest.LogsToFile -3: [ OK ] LoggerTest.LogsToFile (0 ms) +3: [ OK ] LoggerTest.LogsToFile (1 ms) 3: [ RUN ] LoggerTest.LevelFilteringWorks 3: [ OK ] LoggerTest.LevelFilteringWorks (0 ms) 3: [ RUN ] LoggerTest.LogsToMultipleStreams @@ -7056,7 +7091,7 @@ 3: [ OK ] LoggerTest.LogsToMultipleFiles (0 ms) 3: [ RUN ] LoggerTest.LogsToStreamAndFile 3: [ OK ] LoggerTest.LogsToStreamAndFile (0 ms) -3: [----------] 7 tests from LoggerTest (0 ms total) +3: [----------] 7 tests from LoggerTest (1 ms total) 3: 3: [----------] 4 tests from MutexBasicTest 3: [ RUN ] MutexBasicTest.CanBeMade @@ -7071,12 +7106,12 @@ 3: 3: [----------] 3 tests from MutexTaskTest 3: [ RUN ] MutexTaskTest.MutualExclusionWorksWithLock -3: [ OK ] MutexTaskTest.MutualExclusionWorksWithLock (10 ms) +3: [ OK ] MutexTaskTest.MutualExclusionWorksWithLock (1 ms) 3: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread -3: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread (13 ms) +3: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread (0 ms) 3: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread 3: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread (0 ms) -3: [----------] 3 tests from MutexTaskTest (23 ms total) +3: [----------] 3 tests from MutexTaskTest (1 ms total) 3: 3: [----------] 2 tests from PathTest 3: [ RUN ] PathTest.StripSourcePrefixWorks @@ -7102,7 +7137,7 @@ 3: [ RUN ] StringUtilityTest.StripString 3: [ OK ] StringUtilityTest.StripString (0 ms) 3: [ RUN ] StringUtilityTest.SplitString -3: [ OK ] StringUtilityTest.SplitString (0 ms) +3: [ OK ] StringUtilityTest.SplitString (1 ms) 3: [ RUN ] StringUtilityTest.SplitDelimitedString 3: [ OK ] StringUtilityTest.SplitDelimitedString (0 ms) 3: [ RUN ] StringUtilityTest.SplitAndTrimDelimitedString @@ -7111,14 +7146,14 @@ 3: [ OK ] StringUtilityTest.CanCompareCaseInsensitive (0 ms) 3: [ RUN ] StringUtilityTest.CanCompareCaseInsensitiveInLength 3: [ OK ] StringUtilityTest.CanCompareCaseInsensitiveInLength (0 ms) -3: [----------] 9 tests from StringUtilityTest (0 ms total) +3: [----------] 9 tests from StringUtilityTest (1 ms total) 3: 3: [----------] 2 tests from FormatStringTest 3: [ RUN ] FormatStringTest.HandlesBasicFormatting 3: [ OK ] FormatStringTest.HandlesBasicFormatting (0 ms) 3: [ RUN ] FormatStringTest.HandlesLongStrings -3: [ OK ] FormatStringTest.HandlesLongStrings (1 ms) -3: [----------] 2 tests from FormatStringTest (1 ms total) +3: [ OK ] FormatStringTest.HandlesLongStrings (0 ms) +3: [----------] 2 tests from FormatStringTest (0 ms total) 3: 3: [----------] 1 test from StringFormatterTest 3: [ RUN ] StringFormatterTest.HandlesBasicFormatting @@ -7168,10 +7203,10 @@ 3: [ RUN ] TextLineWrapperTest.HandlesHangingIndent 3: [ OK ] TextLineWrapperTest.HandlesHangingIndent (0 ms) 3: [ RUN ] TextLineWrapperTest.HandlesContinuationCharacter -3: [ OK ] TextLineWrapperTest.HandlesContinuationCharacter (0 ms) +3: [ OK ] TextLineWrapperTest.HandlesContinuationCharacter (1 ms) 3: [ RUN ] TextLineWrapperTest.WrapsCorrectlyWithExtraWhitespace 3: [ OK ] TextLineWrapperTest.WrapsCorrectlyWithExtraWhitespace (0 ms) -3: [----------] 10 tests from TextLineWrapperTest (0 ms total) +3: [----------] 10 tests from TextLineWrapperTest (1 ms total) 3: 3: [----------] 6 tests from TextWriterTest 3: [ RUN ] TextWriterTest.WritesLines @@ -7222,7 +7257,7 @@ 3: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.InitLowBits/1 3: [ OK ] BitmaskTest64_10_42/BitmaskTest64.InitLowBits/1 (0 ms) 3: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.Disjoint/0 -3: [ OK ] BitmaskTest64_10_42/BitmaskTest64.Disjoint/0 (1 ms) +3: [ OK ] BitmaskTest64_10_42/BitmaskTest64.Disjoint/0 (0 ms) 3: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.Disjoint/1 3: [ OK ] BitmaskTest64_10_42/BitmaskTest64.Disjoint/1 (0 ms) 3: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.Union/0 @@ -7233,7 +7268,7 @@ 3: [ OK ] BitmaskTest64_10_42/BitmaskTest64.ToHex/0 (0 ms) 3: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.ToHex/1 3: [ OK ] BitmaskTest64_10_42/BitmaskTest64.ToHex/1 (0 ms) -3: [----------] 12 tests from BitmaskTest64_10_42/BitmaskTest64 (1 ms total) +3: [----------] 12 tests from BitmaskTest64_10_42/BitmaskTest64 (0 ms total) 3: 3: [----------] 12 tests from BitmaskTest128_9_78/BitmaskTest128 3: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.SetAndClear/0 @@ -7264,15 +7299,15 @@ 3: 3: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 -3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 (9 ms) +3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 (0 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 (1 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 (0 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 -3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 (7 ms) +3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 (0 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 -3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 (1 ms) +3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 (0 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 (0 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/0 @@ -7281,7 +7316,7 @@ 3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/1 (0 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2 3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2 (0 ms) -3: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest (18 ms total) +3: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest (1 ms total) 3: 3: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest 3: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/0 @@ -7301,9 +7336,9 @@ 3: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest (0 ms total) 3: 3: [----------] Global test environment tear-down -3: [==========] 347 tests from 56 test cases ran. (61 ms total) +3: [==========] 347 tests from 56 test cases ran. (10 ms total) 3: [ PASSED ] 347 tests. - 3/54 Test #3: UtilityUnitTests .................... Passed 0.09 sec + 3/54 Test #3: UtilityUnitTests .................... Passed 0.04 sec test 4 Start 4: UtilityMpiUnitTests @@ -7313,15 +7348,15 @@ 4: [----------] Global test environment set-up. 4: [----------] 2 tests from PhysicalNodeCommunicatorTest 4: [ RUN ] PhysicalNodeCommunicatorTest.CanConstruct -4: [ OK ] PhysicalNodeCommunicatorTest.CanConstruct (32 ms) +4: [ OK ] PhysicalNodeCommunicatorTest.CanConstruct (2 ms) 4: [ RUN ] PhysicalNodeCommunicatorTest.CanCallBarrier -4: [ OK ] PhysicalNodeCommunicatorTest.CanCallBarrier (15 ms) -4: [----------] 2 tests from PhysicalNodeCommunicatorTest (47 ms total) +4: [ OK ] PhysicalNodeCommunicatorTest.CanCallBarrier (0 ms) +4: [----------] 2 tests from PhysicalNodeCommunicatorTest (3 ms total) 4: 4: [----------] Global test environment tear-down -4: [==========] 2 tests from 1 test case ran. (49 ms total) +4: [==========] 2 tests from 1 test case ran. (3 ms total) 4: [ PASSED ] 2 tests. - 4/54 Test #4: UtilityMpiUnitTests ................. Passed 0.07 sec + 4/54 Test #4: UtilityMpiUnitTests ................. Passed 0.02 sec test 5 Start 5: MdlibUnitTest @@ -7336,10 +7371,10 @@ 5: 5: [----------] 2 tests from PrEbinTest 5: [ RUN ] PrEbinTest.HandlesAverages -5: [ OK ] PrEbinTest.HandlesAverages (1 ms) +5: [ OK ] PrEbinTest.HandlesAverages (0 ms) 5: [ RUN ] PrEbinTest.HandlesEmptyAverages 5: [ OK ] PrEbinTest.HandlesEmptyAverages (0 ms) -5: [----------] 2 tests from PrEbinTest (1 ms total) +5: [----------] 2 tests from PrEbinTest (0 ms total) 5: 5: [----------] 4 tests from ShakeTest 5: [ RUN ] ShakeTest.ConstrainsOneBond @@ -7350,7 +7385,7 @@ 5: [ OK ] ShakeTest.ConstrainsTwoBondsWithACommonAtom (0 ms) 5: [ RUN ] ShakeTest.ConstrainsThreeBondsWithCommonAtoms 5: [ OK ] ShakeTest.ConstrainsThreeBondsWithCommonAtoms (0 ms) -5: [----------] 4 tests from ShakeTest (0 ms total) +5: [----------] 4 tests from ShakeTest (1 ms total) 5: 5: [----------] 1 test from NullSignalTest 5: [ RUN ] NullSignalTest.NullSignallerWorks @@ -7397,12 +7432,12 @@ 5: 5: [----------] 1 test from UpdateGroupsCog 5: [ RUN ] UpdateGroupsCog.ComputesCogs -5: [ OK ] UpdateGroupsCog.ComputesCogs (1 ms) -5: [----------] 1 test from UpdateGroupsCog (1 ms total) +5: [ OK ] UpdateGroupsCog.ComputesCogs (0 ms) +5: [----------] 1 test from UpdateGroupsCog (0 ms total) 5: 5: [----------] 84 tests from WithParameters/ConstraintsTest 5: [ RUN ] WithParameters/ConstraintsTest.SingleConstraint/0 -5: [ OK ] WithParameters/ConstraintsTest.SingleConstraint/0 (0 ms) +5: [ OK ] WithParameters/ConstraintsTest.SingleConstraint/0 (1 ms) 5: [ RUN ] WithParameters/ConstraintsTest.SingleConstraint/1 5: [ OK ] WithParameters/ConstraintsTest.SingleConstraint/1 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.SingleConstraint/2 @@ -7462,7 +7497,7 @@ 5: [ RUN ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/5 5: [ OK ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/5 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/6 -5: [ OK ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/6 (0 ms) +5: [ OK ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/6 (1 ms) 5: [ RUN ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/7 5: [ OK ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/7 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/8 @@ -7554,7 +7589,7 @@ 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/15 5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/15 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/16 -5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/16 (7 ms) +5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/16 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/17 5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/17 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/18 @@ -7569,18 +7604,18 @@ 5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/22 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/23 5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/23 (0 ms) -5: [----------] 84 tests from WithParameters/ConstraintsTest (9 ms total) +5: [----------] 84 tests from WithParameters/ConstraintsTest (3 ms total) 5: 5: [----------] 11 tests from WithParameters/EnergyOutputTest 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/0 5: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_0.edr as single precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/0 (2 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/0 (3 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/1 5: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_1.edr as single precision energy file 5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/1 (1 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/2 5: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_2.edr as single precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/2 (1 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/2 (2 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/3 5: [ OK ] WithParameters/EnergyOutputTest.CheckOutput/3 (1 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/4 @@ -7588,10 +7623,10 @@ 5: Reading energy frame 0 time 10.100 Reading energy frame 1 time 27.500 Reading energy frame 2 time 44.900 Reading energy frame 3 time 62.300 Reading energy frame 4 time 79.700 Reading energy frame 5 time 97.100 Reading energy frame 6 time 114.500 Reading energy frame 7 time 131.900 Reading energy frame 8 time 149.300 Reading energy frame 9 time 166.700 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/4 (9 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/5 5: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_5.edr as single precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/5 (2 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/5 (3 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/6 5: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_6.edr as single precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/6 (3 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/6 (2 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/7 5: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_7.edr as single precision energy file 5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/7 (2 ms) @@ -7618,7 +7653,7 @@ 5: [ RUN ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/4 5: [ OK ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/4 (0 ms) 5: [ RUN ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/5 -5: [ OK ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/5 (0 ms) +5: [ OK ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/5 (1 ms) 5: [ RUN ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/6 5: [ OK ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/6 (0 ms) 5: [ RUN ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/7 @@ -7655,7 +7690,7 @@ 5: [ OK ] SimpleTests/CalculateAcceptanceWeightSimple.BarkerAndMinVarAreIdentical/6 (0 ms) 5: [ RUN ] SimpleTests/CalculateAcceptanceWeightSimple.BarkerAndMinVarAreIdentical/7 5: [ OK ] SimpleTests/CalculateAcceptanceWeightSimple.BarkerAndMinVarAreIdentical/7 (0 ms) -5: [----------] 24 tests from SimpleTests/CalculateAcceptanceWeightSimple (0 ms total) +5: [----------] 24 tests from SimpleTests/CalculateAcceptanceWeightSimple (1 ms total) 5: 5: [----------] 14 tests from RegressionTests/CalculateAcceptanceWeightRangeRegression 5: [ RUN ] RegressionTests/CalculateAcceptanceWeightRangeRegression.ValuesMatch/0 @@ -7696,21 +7731,21 @@ 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/2 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/2 (0 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/3 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/3 (1 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/3 (0 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/4 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/4 (0 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/4 (1 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/5 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/5 (4 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/5 (1 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/6 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/6 (7 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/6 (5 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/7 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/7 (0 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/8 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/8 (0 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/8 (1 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/9 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/9 (1 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/9 (0 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/10 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/10 (1 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/10 (2 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/11 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/11 (1 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/12 @@ -7718,10 +7753,10 @@ 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/13 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/13 (2 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/14 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/14 (1 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/14 (2 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/15 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/15 (1 ms) -5: [----------] 16 tests from WithParameters/LeapFrogTest (27 ms total) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/15 (2 ms) +5: [----------] 16 tests from WithParameters/LeapFrogTest (22 ms total) 5: 5: [----------] 13 tests from WithParameters/SettleTest 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/0 @@ -7729,33 +7764,33 @@ 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/1 5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/1 (0 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/2 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/2 (0 ms) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/2 (1 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/3 5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/3 (0 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/4 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/4 (1 ms) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/4 (0 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/5 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/5 (0 ms) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/5 (1 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/6 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/6 (1 ms) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/6 (0 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/7 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/7 (0 ms) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/7 (1 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/8 5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/8 (1 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/9 5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/9 (1 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/10 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/10 (1 ms) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/10 (0 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/11 5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/11 (1 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/12 5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/12 (1 ms) -5: [----------] 13 tests from WithParameters/SettleTest (7 ms total) +5: [----------] 13 tests from WithParameters/SettleTest (8 ms total) 5: 5: [----------] Global test environment tear-down -5: [==========] 187 tests from 13 test cases ran. (76 ms total) +5: [==========] 187 tests from 13 test cases ran. (66 ms total) 5: [ PASSED ] 187 tests. - 5/54 Test #5: MdlibUnitTest ....................... Passed 0.11 sec + 5/54 Test #5: MdlibUnitTest ....................... Passed 0.09 sec test 6 Start 6: AppliedForcesUnitTest @@ -7765,16 +7800,16 @@ 6: [----------] Global test environment set-up. 6: [----------] 2 tests from DensityFittingTest 6: [ RUN ] DensityFittingTest.ForceProviderLackingInputThrows -6: [ OK ] DensityFittingTest.ForceProviderLackingInputThrows (1 ms) +6: [ OK ] DensityFittingTest.ForceProviderLackingInputThrows (0 ms) 6: [ RUN ] DensityFittingTest.SingleAtom -6: [ OK ] DensityFittingTest.SingleAtom (0 ms) +6: [ OK ] DensityFittingTest.SingleAtom (1 ms) 6: [----------] 2 tests from DensityFittingTest (1 ms total) 6: 6: [----------] 8 tests from DensityFittingOptionsTest 6: [ RUN ] DensityFittingOptionsTest.DefaultParameters 6: [ OK ] DensityFittingOptionsTest.DefaultParameters (0 ms) 6: [ RUN ] DensityFittingOptionsTest.OptionSetsActive -6: [ OK ] DensityFittingOptionsTest.OptionSetsActive (1 ms) +6: [ OK ] DensityFittingOptionsTest.OptionSetsActive (0 ms) 6: [ RUN ] DensityFittingOptionsTest.OutputNoDefaultValuesWhenInactive 6: [ OK ] DensityFittingOptionsTest.OutputNoDefaultValuesWhenInactive (0 ms) 6: [ RUN ] DensityFittingOptionsTest.OutputDefaultValuesWhenActive @@ -7787,7 +7822,7 @@ 6: [ OK ] DensityFittingOptionsTest.KvtToInternal (0 ms) 6: [ RUN ] DensityFittingOptionsTest.RoundTripForInternalsIsIdempotent 6: [ OK ] DensityFittingOptionsTest.RoundTripForInternalsIsIdempotent (0 ms) -6: [----------] 8 tests from DensityFittingOptionsTest (1 ms total) +6: [----------] 8 tests from DensityFittingOptionsTest (0 ms total) 6: 6: [----------] 7 tests from DensityFittingAmplitudeLookupTest 6: [ RUN ] DensityFittingAmplitudeLookupTest.Unity @@ -7816,9 +7851,9 @@ 6: [----------] 3 tests from ElectricFieldTest (0 ms total) 6: 6: [----------] Global test environment tear-down -6: [==========] 20 tests from 4 test cases ran. (2 ms total) +6: [==========] 20 tests from 4 test cases ran. (1 ms total) 6: [ PASSED ] 20 tests. - 6/54 Test #6: AppliedForcesUnitTest ............... Passed 0.02 sec + 6/54 Test #6: AppliedForcesUnitTest ............... Passed 0.01 sec test 7 Start 7: CommandLineUnitTests @@ -7828,12 +7863,12 @@ 7: [----------] Global test environment set-up. 7: [----------] 3 tests from CommandLineHelpModuleTest 7: [ RUN ] CommandLineHelpModuleTest.PrintsGeneralHelp -7: [ OK ] CommandLineHelpModuleTest.PrintsGeneralHelp (0 ms) +7: [ OK ] CommandLineHelpModuleTest.PrintsGeneralHelp (1 ms) 7: [ RUN ] CommandLineHelpModuleTest.PrintsHelpOnTopic -7: [ OK ] CommandLineHelpModuleTest.PrintsHelpOnTopic (1 ms) +7: [ OK ] CommandLineHelpModuleTest.PrintsHelpOnTopic (0 ms) 7: [ RUN ] CommandLineHelpModuleTest.ExportsHelp -7: [ OK ] CommandLineHelpModuleTest.ExportsHelp (0 ms) -7: [----------] 3 tests from CommandLineHelpModuleTest (1 ms total) +7: [ OK ] CommandLineHelpModuleTest.ExportsHelp (1 ms) +7: [----------] 3 tests from CommandLineHelpModuleTest (2 ms total) 7: 7: [----------] 7 tests from CommandLineHelpWriterTest 7: [ RUN ] CommandLineHelpWriterTest.HandlesOptionTypes @@ -7854,7 +7889,7 @@ 7: 7: [----------] 6 tests from CommandLineModuleManagerTest 7: [ RUN ] CommandLineModuleManagerTest.RunsModule -7: [ OK ] CommandLineModuleManagerTest.RunsModule (1 ms) +7: [ OK ] CommandLineModuleManagerTest.RunsModule (0 ms) 7: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelp 7: [ OK ] CommandLineModuleManagerTest.RunsModuleHelp (0 ms) 7: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet @@ -7887,14 +7922,14 @@ 7: [ RUN ] CommandLineParserTest.HandlesOptionsStartingWithNumbers 7: [ OK ] CommandLineParserTest.HandlesOptionsStartingWithNumbers (0 ms) 7: [ RUN ] CommandLineParserTest.HandlesSkipUnknown -7: [ OK ] CommandLineParserTest.HandlesSkipUnknown (0 ms) +7: [ OK ] CommandLineParserTest.HandlesSkipUnknown (1 ms) 7: [ RUN ] CommandLineParserTest.RejectsPositionalArgumentsByDefault 7: [ OK ] CommandLineParserTest.RejectsPositionalArgumentsByDefault (0 ms) 7: [ RUN ] CommandLineParserTest.CanAllowPositionalArguments 7: [ OK ] CommandLineParserTest.CanAllowPositionalArguments (0 ms) 7: [ RUN ] CommandLineParserTest.CannotHavePositionalArgumentsAfterOptions 7: [ OK ] CommandLineParserTest.CannotHavePositionalArgumentsAfterOptions (0 ms) -7: [----------] 13 tests from CommandLineParserTest (0 ms total) +7: [----------] 13 tests from CommandLineParserTest (1 ms total) 7: 7: [----------] 6 tests from CommandLineProgramContextTest 7: [ RUN ] CommandLineProgramContextTest.FindsBinaryWithAbsolutePath @@ -7950,25 +7985,25 @@ 7: [ RUN ] ParseCommonArgsTest.HandlesNonExistentInputFiles 7: [ OK ] ParseCommonArgsTest.HandlesNonExistentInputFiles (0 ms) 7: [ RUN ] ParseCommonArgsTest.HandlesNonExistentOptionalInputFiles -7: [ OK ] ParseCommonArgsTest.HandlesNonExistentOptionalInputFiles (0 ms) +7: [ OK ] ParseCommonArgsTest.HandlesNonExistentOptionalInputFiles (1 ms) 7: [ RUN ] ParseCommonArgsTest.AcceptsNonExistentInputFilesIfSpecified -7: [ OK ] ParseCommonArgsTest.AcceptsNonExistentInputFilesIfSpecified (3 ms) +7: [ OK ] ParseCommonArgsTest.AcceptsNonExistentInputFilesIfSpecified (0 ms) 7: [ RUN ] ParseCommonArgsTest.HandlesCompressedFiles 7: [ OK ] ParseCommonArgsTest.HandlesCompressedFiles (0 ms) 7: [ RUN ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension 7: [ OK ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension (0 ms) 7: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFile -7: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFile (1 ms) +7: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFile (0 ms) 7: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName 7: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName (0 ms) 7: [ RUN ] ParseCommonArgsTest.CanKeepUnknownArgs 7: [ OK ] ParseCommonArgsTest.CanKeepUnknownArgs (0 ms) -7: [----------] 21 tests from ParseCommonArgsTest (4 ms total) +7: [----------] 21 tests from ParseCommonArgsTest (1 ms total) 7: 7: [----------] Global test environment tear-down -7: [==========] 59 tests from 7 test cases ran. (8 ms total) +7: [==========] 59 tests from 7 test cases ran. (7 ms total) 7: [ PASSED ] 59 tests. - 7/54 Test #7: CommandLineUnitTests ................ Passed 0.03 sec + 7/54 Test #7: CommandLineUnitTests ................ Passed 0.02 sec test 8 Start 8: DomDecTests @@ -7991,7 +8026,7 @@ 8: [ OK ] HashedMap.LinkedEntries (0 ms) 8: [ RUN ] HashedMap.ResizesTable 8: [ OK ] HashedMap.ResizesTable (0 ms) -8: [----------] 7 tests from HashedMap (1 ms total) +8: [----------] 7 tests from HashedMap (0 ms total) 8: 8: [----------] 2 tests from LocalAtomSetManager 8: [ RUN ] LocalAtomSetManager.CanAddEmptyLocalAtomSet @@ -8001,9 +8036,9 @@ 8: [----------] 2 tests from LocalAtomSetManager (0 ms total) 8: 8: [----------] Global test environment tear-down -8: [==========] 9 tests from 2 test cases ran. (1 ms total) +8: [==========] 9 tests from 2 test cases ran. (0 ms total) 8: [ PASSED ] 9 tests. - 8/54 Test #8: DomDecTests ......................... Passed 0.02 sec + 8/54 Test #8: DomDecTests ......................... Passed 0.01 sec test 9 Start 9: EwaldUnitTests @@ -8019,61 +8054,61 @@ 9: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 (0 ms) 9: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 -9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 (3 ms) +9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 (4 ms) 9: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 (0 ms) -9: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest (3 ms total) +9: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest (4 ms total) 9: 9: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 (3 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 (10 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 (1 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 (1 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 (1 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 (10 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 (4 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 (1 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 (3 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 (1 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 (10 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 (1 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 (0 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 (6 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 (5 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 (1 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 (4 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 (1 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 (5 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 (1 ms) -9: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest (87 ms total) +9: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest (46 ms total) 9: 9: [----------] 144 tests from SaneInput/PmeGatherTest 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/0 @@ -8081,65 +8116,65 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/1 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/1 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/2 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/2 (5 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/2 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/3 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/3 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/4 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/4 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/4 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/5 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/5 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/5 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/6 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/6 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/7 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/7 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/7 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/8 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/8 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/9 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/9 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/9 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/10 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/10 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/11 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/11 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/11 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/12 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/12 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/12 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/13 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/13 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/14 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/14 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/14 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/15 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/15 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/15 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/16 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/16 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/17 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/17 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/18 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/18 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/18 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/19 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/19 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/20 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/20 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/20 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/21 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/21 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/22 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/22 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/22 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/23 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/23 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/24 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/24 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/24 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/25 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/25 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/26 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/26 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/26 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/27 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/27 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/28 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/28 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/28 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/29 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/29 (5 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/29 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/30 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/30 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/31 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/31 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/31 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/32 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/32 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/33 @@ -8147,13 +8182,13 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/34 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/34 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/35 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/35 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/35 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/36 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/36 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/36 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/37 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/37 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/38 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/38 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/38 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/39 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/39 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/40 @@ -8161,7 +8196,7 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/41 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/41 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/42 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/42 (5 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/42 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/43 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/43 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/44 @@ -8181,23 +8216,23 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/51 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/51 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/52 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/52 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/52 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/53 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/53 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/53 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/54 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/54 (4 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/54 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/55 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/55 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/55 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/56 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/56 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/56 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/57 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/57 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/58 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/58 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/58 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/59 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/59 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/60 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/60 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/60 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/61 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/61 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/62 @@ -8205,57 +8240,57 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/63 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/63 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/64 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/64 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/64 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/65 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/65 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/65 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/66 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/66 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/67 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/67 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/67 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/68 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/68 (5 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/68 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/69 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/69 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/70 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/70 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/71 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/71 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/71 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/72 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/72 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/72 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/73 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/73 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/74 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/74 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/74 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/75 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/75 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/76 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/76 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/76 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/77 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/77 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/78 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/78 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/79 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/79 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/79 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/80 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/80 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/81 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/81 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/81 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/82 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/82 (5 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/82 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/83 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/83 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/84 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/84 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/85 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/85 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/85 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/86 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/86 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/86 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/87 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/87 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/88 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/88 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/89 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/89 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/89 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/90 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/90 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/91 @@ -8267,7 +8302,7 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/94 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/94 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/95 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/95 (4 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/95 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/96 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/96 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/97 @@ -8275,29 +8310,29 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/98 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/98 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/99 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/99 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/99 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/100 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/100 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/101 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/101 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/102 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/102 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/102 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/103 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/103 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/103 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/104 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/104 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/105 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/105 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/106 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/106 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/106 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/107 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/107 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/108 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/108 (4 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/108 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/109 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/109 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/109 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/110 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/110 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/110 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/111 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/111 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/112 @@ -8309,9 +8344,9 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/115 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/115 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/116 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/116 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/116 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/117 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/117 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/117 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/118 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/118 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/119 @@ -8321,35 +8356,35 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/121 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/121 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/122 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/122 (4 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/122 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/123 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/123 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/123 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/124 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/124 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/124 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/125 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/125 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/126 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/126 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/126 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/127 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/127 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/128 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/128 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/128 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/129 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/129 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/129 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/130 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/130 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/131 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/131 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/131 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/132 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/132 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/133 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/133 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/133 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/134 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/134 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/135 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/135 (4 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/135 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/136 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/136 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/136 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/137 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/137 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/138 @@ -8361,28 +8396,28 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/141 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/141 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/142 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/142 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/142 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/143 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/143 (0 ms) -9: [----------] 144 tests from SaneInput/PmeGatherTest (88 ms total) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/143 (1 ms) +9: [----------] 144 tests from SaneInput/PmeGatherTest (42 ms total) 9: 9: [----------] 16 tests from SaneInput/PmeSolveTest 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/0 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/0 (5 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/0 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/1 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/1 (2 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/1 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/2 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/2 (0 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/2 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/3 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/3 (2 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/3 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/4 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/4 (6 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/4 (2 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/5 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/5 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/6 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/6 (1 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/6 (0 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/7 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/7 (5 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/7 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/8 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/8 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/9 @@ -8390,41 +8425,41 @@ 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/10 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/10 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/11 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/11 (5 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/11 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/12 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/12 (1 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/12 (0 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/13 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/13 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/14 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/14 (0 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/14 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/15 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/15 (1 ms) -9: [----------] 16 tests from SaneInput/PmeSolveTest (33 ms total) +9: [----------] 16 tests from SaneInput/PmeSolveTest (15 ms total) 9: 9: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 -9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 (5 ms) +9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 (1 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 -9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 (1 ms) +9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 (0 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 -9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 (0 ms) +9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 (1 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 -9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 (1 ms) +9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 (0 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 (1 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 -9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 (5 ms) +9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 (1 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 (0 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 (1 ms) -9: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest (14 ms total) +9: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest (5 ms total) 9: 9: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 (1 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 -9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 (6 ms) +9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 (1 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 (1 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 @@ -8432,133 +8467,133 @@ 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 (1 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 -9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 (5 ms) +9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 (1 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 (1 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 (1 ms) -9: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest (17 ms total) +9: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest (8 ms total) 9: 9: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 (5 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 (2 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 (5 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 (1 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 (0 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 (0 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 (5 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 (2 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 (0 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 (0 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 (1 ms) -9: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest (32 ms total) +9: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest (14 ms total) 9: 9: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 (7 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 (2 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 (5 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 (2 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 (6 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 (2 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 (1 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 (0 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 (5 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 (2 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 (1 ms) -9: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest (37 ms total) +9: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest (14 ms total) 9: 9: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 (1 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 (2 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 (1 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 (1 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 (6 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 (1 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 (1 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 (2 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 (6 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 (1 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 (1 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 (1 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 (6 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 (1 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 (1 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 (7 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 (2 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 (2 ms) -9: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest (36 ms total) +9: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest (16 ms total) 9: 9: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 (7 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 (2 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 (7 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 (3 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 (8 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 (3 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 (9 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 (4 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 (14 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 (5 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 (15 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 (5 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 (3 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 (2 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 (7 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 (2 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 (8 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 (3 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 (9 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 (4 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 (13 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 (4 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 (5 ms) -9: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest (108 ms total) +9: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest (43 ms total) 9: 9: [----------] Global test environment tear-down -9: [==========] 257 tests from 10 test cases ran. (602 ms total) +9: [==========] 257 tests from 10 test cases ran. (275 ms total) 9: [ PASSED ] 257 tests. - 9/54 Test #9: EwaldUnitTests ...................... Passed 0.67 sec + 9/54 Test #9: EwaldUnitTests ...................... Passed 0.32 sec test 10 Start 10: FFTUnitTests @@ -8568,48 +8603,48 @@ 10: [----------] Global test environment set-up. 10: [----------] 2 tests from ManyFFTTest 10: [ RUN ] ManyFFTTest.Complex1DLength48Multi5Test -10: [ OK ] ManyFFTTest.Complex1DLength48Multi5Test (17 ms) +10: [ OK ] ManyFFTTest.Complex1DLength48Multi5Test (7 ms) 10: [ RUN ] ManyFFTTest.Real1DLength48Multi5Test -10: [ OK ] ManyFFTTest.Real1DLength48Multi5Test (66 ms) -10: [----------] 2 tests from ManyFFTTest (84 ms total) +10: [ OK ] ManyFFTTest.Real1DLength48Multi5Test (23 ms) +10: [----------] 2 tests from ManyFFTTest (30 ms total) 10: 10: [----------] 1 test from FFTTest 10: [ RUN ] FFTTest.Real2DLength18_15Test -10: [ OK ] FFTTest.Real2DLength18_15Test (16 ms) -10: [----------] 1 test from FFTTest (16 ms total) +10: [ OK ] FFTTest.Real2DLength18_15Test (5 ms) +10: [----------] 1 test from FFTTest (6 ms total) 10: 10: [----------] 1 test from FFFTest3D 10: [ RUN ] FFFTest3D.Real5_6_9 -10: [ OK ] FFFTest3D.Real5_6_9 (2 ms) -10: [----------] 1 test from FFFTest3D (3 ms total) +10: [ OK ] FFFTest3D.Real5_6_9 (1 ms) +10: [----------] 1 test from FFFTest3D (1 ms total) 10: 10: [----------] 10 tests from 7_8_25_36_60/FFTTest1D 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/0 10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/0 (1 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/1 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/1 (8 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/1 (1 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/2 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/2 (2 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/2 (1 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/3 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/3 (5 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/3 (4 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/4 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/4 (10 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/4 (1 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/0 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/0 (0 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/0 (1 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/1 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/1 (1 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/1 (0 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/2 10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/2 (1 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/3 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/3 (32 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/3 (12 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/4 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/4 (47 ms) -10: [----------] 10 tests from 7_8_25_36_60/FFTTest1D (108 ms total) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/4 (18 ms) +10: [----------] 10 tests from 7_8_25_36_60/FFTTest1D (40 ms total) 10: 10: [----------] Global test environment tear-down -10: [==========] 14 tests from 4 test cases ran. (211 ms total) +10: [==========] 14 tests from 4 test cases ran. (77 ms total) 10: [ PASSED ] 14 tests. -10/54 Test #10: FFTUnitTests ........................ Passed 0.25 sec +10/54 Test #10: FFTUnitTests ........................ Passed 0.09 sec test 11 Start 11: GpuUtilsUnitTests @@ -8761,12 +8796,12 @@ 11: [ RUN ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment 11: [ OK ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment (0 ms) 11: [ RUN ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment -11: [ OK ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment (4 ms) +11: [ OK ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment (1 ms) 11: [ RUN ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment 11: [ OK ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment (0 ms) 11: [ RUN ] AllocatorTest/0.Move 11: [ OK ] AllocatorTest/0.Move (0 ms) -11: [----------] 4 tests from AllocatorTest/0 (4 ms total) +11: [----------] 4 tests from AllocatorTest/0 (1 ms total) 11: 11: [----------] 4 tests from AllocatorTest/1, where TypeParam = gmx::Allocator 11: [ RUN ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment @@ -8777,7 +8812,7 @@ 11: [ OK ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment (0 ms) 11: [ RUN ] AllocatorTest/1.Move 11: [ OK ] AllocatorTest/1.Move (0 ms) -11: [----------] 4 tests from AllocatorTest/1 (1 ms total) +11: [----------] 4 tests from AllocatorTest/1 (0 ms total) 11: 11: [----------] 4 tests from AllocatorTest/2, where TypeParam = gmx::Allocator, gmx::HostAllocationPolicy> 11: [ RUN ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment @@ -8802,9 +8837,9 @@ 11: [----------] 4 tests from AllocatorTest/3 (0 ms total) 11: 11: [----------] Global test environment tear-down -11: [==========] 62 tests from 20 test cases ran. (5 ms total) +11: [==========] 62 tests from 20 test cases ran. (1 ms total) 11: [ PASSED ] 62 tests. -11/54 Test #11: GpuUtilsUnitTests ................... Passed 0.04 sec +11/54 Test #11: GpuUtilsUnitTests ................... Passed 0.03 sec test 12 Start 12: HardwareUnitTests @@ -8814,19 +8849,19 @@ 12: [----------] Global test environment set-up. 12: [----------] 4 tests from HardwareTopologyTest 12: [ RUN ] HardwareTopologyTest.Execute -12: [ OK ] HardwareTopologyTest.Execute (104 ms) +12: [ OK ] HardwareTopologyTest.Execute (48 ms) 12: [ RUN ] HardwareTopologyTest.HwlocExecute -12: [ OK ] HardwareTopologyTest.HwlocExecute (99 ms) +12: [ OK ] HardwareTopologyTest.HwlocExecute (47 ms) 12: [ RUN ] HardwareTopologyTest.ProcessorSelfconsistency -12: [ OK ] HardwareTopologyTest.ProcessorSelfconsistency (101 ms) +12: [ OK ] HardwareTopologyTest.ProcessorSelfconsistency (45 ms) 12: [ RUN ] HardwareTopologyTest.NumaCacheSelfconsistency -12: [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (91 ms) -12: [----------] 4 tests from HardwareTopologyTest (396 ms total) +12: [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (47 ms) +12: [----------] 4 tests from HardwareTopologyTest (187 ms total) 12: 12: [----------] Global test environment tear-down -12: [==========] 4 tests from 1 test case ran. (396 ms total) +12: [==========] 4 tests from 1 test case ran. (187 ms total) 12: [ PASSED ] 4 tests. -12/54 Test #12: HardwareUnitTests ................... Passed 0.44 sec +12/54 Test #12: HardwareUnitTests ................... Passed 0.20 sec test 13 Start 13: MathUnitTests @@ -8875,14 +8910,14 @@ 13: [ RUN ] TranslateAndScaleTest.translationAndScalingNonTrivial 13: [ OK ] TranslateAndScaleTest.translationAndScalingNonTrivial (0 ms) 13: [ RUN ] TranslateAndScaleTest.scalingIdentity -13: [ OK ] TranslateAndScaleTest.scalingIdentity (1 ms) +13: [ OK ] TranslateAndScaleTest.scalingIdentity (0 ms) 13: [ RUN ] TranslateAndScaleTest.scalingNonTrivial 13: [ OK ] TranslateAndScaleTest.scalingNonTrivial (0 ms) 13: [ RUN ] TranslateAndScaleTest.scalingInverseNoZero 13: [ OK ] TranslateAndScaleTest.scalingInverseNoZero (0 ms) 13: [ RUN ] TranslateAndScaleTest.scalingInverseWithOneScaleDimensionZero 13: [ OK ] TranslateAndScaleTest.scalingInverseWithOneScaleDimensionZero (0 ms) -13: [----------] 8 tests from TranslateAndScaleTest (1 ms total) +13: [----------] 8 tests from TranslateAndScaleTest (0 ms total) 13: 13: [----------] 12 tests from DensitySimilarityTest 13: [ RUN ] DensitySimilarityTest.InnerProductIsCorrect @@ -8892,7 +8927,7 @@ 13: [ RUN ] DensitySimilarityTest.GradientThrowsIfDensitiesDontMatch 13: [ OK ] DensitySimilarityTest.GradientThrowsIfDensitiesDontMatch (0 ms) 13: [ RUN ] DensitySimilarityTest.SimilarityThrowsIfDensitiesDontMatch -13: [ OK ] DensitySimilarityTest.SimilarityThrowsIfDensitiesDontMatch (0 ms) +13: [ OK ] DensitySimilarityTest.SimilarityThrowsIfDensitiesDontMatch (1 ms) 13: [ RUN ] DensitySimilarityTest.CopiedMeasureInnerProductIsCorrect 13: [ OK ] DensitySimilarityTest.CopiedMeasureInnerProductIsCorrect (0 ms) 13: [ RUN ] DensitySimilarityTest.RelativeEntropyOfSameDensityIsZero @@ -8902,14 +8937,14 @@ 13: [ RUN ] DensitySimilarityTest.RelativeEntropyGradientIsCorrect 13: [ OK ] DensitySimilarityTest.RelativeEntropyGradientIsCorrect (0 ms) 13: [ RUN ] DensitySimilarityTest.CrossCorrelationIsOne -13: [ OK ] DensitySimilarityTest.CrossCorrelationIsOne (53 ms) +13: [ OK ] DensitySimilarityTest.CrossCorrelationIsOne (26 ms) 13: [ RUN ] DensitySimilarityTest.CrossCorrelationIsMinusOneWhenAntiCorrelated -13: [ OK ] DensitySimilarityTest.CrossCorrelationIsMinusOneWhenAntiCorrelated (49 ms) +13: [ OK ] DensitySimilarityTest.CrossCorrelationIsMinusOneWhenAntiCorrelated (27 ms) 13: [ RUN ] DensitySimilarityTest.CrossCorrelationGradientIsZeroWhenCorrelated -13: [ OK ] DensitySimilarityTest.CrossCorrelationGradientIsZeroWhenCorrelated (39 ms) +13: [ OK ] DensitySimilarityTest.CrossCorrelationGradientIsZeroWhenCorrelated (16 ms) 13: [ RUN ] DensitySimilarityTest.CrossCorrelationGradientIsCorrect 13: [ OK ] DensitySimilarityTest.CrossCorrelationGradientIsCorrect (0 ms) -13: [----------] 12 tests from DensitySimilarityTest (141 ms total) +13: [----------] 12 tests from DensitySimilarityTest (70 ms total) 13: 13: [----------] 6 tests from StructureSimilarityTest 13: [ RUN ] StructureSimilarityTest.StructureComparedToSelfHasZeroRMSD @@ -8949,7 +8984,7 @@ 13: [ RUN ] FunctionTest.StaticLog2 13: [ OK ] FunctionTest.StaticLog2 (0 ms) 13: [ RUN ] FunctionTest.Log2I32Bit -13: [ OK ] FunctionTest.Log2I32Bit (0 ms) +13: [ OK ] FunctionTest.Log2I32Bit (1 ms) 13: [ RUN ] FunctionTest.Log2I64Bit 13: [ OK ] FunctionTest.Log2I64Bit (0 ms) 13: [ RUN ] FunctionTest.GreatestCommonDivisor @@ -8973,9 +9008,9 @@ 13: [ RUN ] FunctionTest.SixthrootInteger 13: [ OK ] FunctionTest.SixthrootInteger (0 ms) 13: [ RUN ] FunctionTest.InvsixthrootFloat -13: [ OK ] FunctionTest.InvsixthrootFloat (8 ms) +13: [ OK ] FunctionTest.InvsixthrootFloat (0 ms) 13: [ RUN ] FunctionTest.InvsixthrootDouble -13: [ OK ] FunctionTest.InvsixthrootDouble (1 ms) +13: [ OK ] FunctionTest.InvsixthrootDouble (0 ms) 13: [ RUN ] FunctionTest.InvsixthrootInteger 13: [ OK ] FunctionTest.InvsixthrootInteger (0 ms) 13: [ RUN ] FunctionTest.Powers @@ -8983,12 +9018,12 @@ 13: [ RUN ] FunctionTest.ErfInvFloat 13: [ OK ] FunctionTest.ErfInvFloat (0 ms) 13: [ RUN ] FunctionTest.ErfInvDouble -13: [ OK ] FunctionTest.ErfInvDouble (0 ms) +13: [ OK ] FunctionTest.ErfInvDouble (1 ms) 13: [ RUN ] FunctionTest.ErfAndErfInvAreInversesFloat 13: [ OK ] FunctionTest.ErfAndErfInvAreInversesFloat (0 ms) 13: [ RUN ] FunctionTest.ErfAndErfInvAreInversesDouble 13: [ OK ] FunctionTest.ErfAndErfInvAreInversesDouble (0 ms) -13: [----------] 21 tests from FunctionTest (10 ms total) +13: [----------] 21 tests from FunctionTest (2 ms total) 13: 13: [----------] 4 tests from GaussianOn1DLattice 13: [ RUN ] GaussianOn1DLattice.sumsCloseToOne @@ -9017,10 +9052,10 @@ 13: [ RUN ] GaussTransformTest.complementaryGaussAddToZero 13: [ OK ] GaussTransformTest.complementaryGaussAddToZero (0 ms) 13: [ RUN ] GaussTransformTest.centerGaussianInCubeHasExpectedValues -13: [ OK ] GaussTransformTest.centerGaussianInCubeHasExpectedValues (1 ms) +13: [ OK ] GaussTransformTest.centerGaussianInCubeHasExpectedValues (0 ms) 13: [ RUN ] GaussTransformTest.view 13: [ OK ] GaussTransformTest.view (0 ms) -13: [----------] 9 tests from GaussTransformTest (1 ms total) +13: [----------] 9 tests from GaussTransformTest (0 ms total) 13: 13: [----------] 3 tests from DensityFittingForce 13: [ RUN ] DensityFittingForce.isZeroWhenMatchingDensity @@ -9114,7 +9149,7 @@ 13: [ RUN ] MultiDimArrayTest.dynamicMultiDimArrayResizesToCorrectExtent 13: [ OK ] MultiDimArrayTest.dynamicMultiDimArrayResizesToCorrectExtent (0 ms) 13: [ RUN ] MultiDimArrayTest.dynamicMultiDimArrayResizeAndSetValue -13: [ OK ] MultiDimArrayTest.dynamicMultiDimArrayResizeAndSetValue (0 ms) +13: [ OK ] MultiDimArrayTest.dynamicMultiDimArrayResizeAndSetValue (1 ms) 13: [ RUN ] MultiDimArrayTest.staticMultiDimArrayFromArray 13: [ OK ] MultiDimArrayTest.staticMultiDimArrayFromArray (0 ms) 13: [ RUN ] MultiDimArrayTest.conversionToView @@ -9129,7 +9164,7 @@ 13: [ OK ] MultiDimArrayTest.constViewConstBegin (0 ms) 13: [ RUN ] MultiDimArrayTest.constViewConstEnd 13: [ OK ] MultiDimArrayTest.constViewConstEnd (0 ms) -13: [----------] 25 tests from MultiDimArrayTest (0 ms total) +13: [----------] 25 tests from MultiDimArrayTest (1 ms total) 13: 13: [----------] 4 tests from MultiDimArrayToMdSpanTest 13: [ RUN ] MultiDimArrayToMdSpanTest.convertsToMdSpan @@ -9217,7 +9252,7 @@ 13: [ OK ] PaddedVectorTest/6.CanMoveAssign (0 ms) 13: [ RUN ] PaddedVectorTest/6.CanSwap 13: [ OK ] PaddedVectorTest/6.CanSwap (0 ms) -13: [----------] 4 tests from PaddedVectorTest/6 (1 ms total) +13: [----------] 4 tests from PaddedVectorTest/6 (0 ms total) 13: 13: [----------] 4 tests from PaddedVectorTest/7, where TypeParam = gmx::Allocator 13: [ RUN ] PaddedVectorTest/7.ConstructsResizesAndReserves @@ -9330,9 +9365,9 @@ 13: [----------] 37 tests from RVecTest (0 ms total) 13: 13: [----------] Global test environment tear-down -13: [==========] 204 tests from 29 test cases ran. (154 ms total) +13: [==========] 204 tests from 29 test cases ran. (73 ms total) 13: [ PASSED ] 204 tests. -13/54 Test #13: MathUnitTests ....................... Passed 0.20 sec +13/54 Test #13: MathUnitTests ....................... Passed 0.11 sec test 14 Start 14: MdrunUtilityUnitTests @@ -9346,13 +9381,13 @@ 14: [ RUN ] ThreadAffinityTest.DoesNothingWhenNotSupported 14: [ OK ] ThreadAffinityTest.DoesNothingWhenNotSupported (0 ms) 14: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads -14: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads (1 ms) +14: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads (0 ms) 14: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads 14: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads (0 ms) 14: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads 14: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads (0 ms) 14: [ RUN ] ThreadAffinityTest.DoesNothingWithUnknownHardware -14: [ OK ] ThreadAffinityTest.DoesNothingWithUnknownHardware (0 ms) +14: [ OK ] ThreadAffinityTest.DoesNothingWithUnknownHardware (1 ms) 14: [ RUN ] ThreadAffinityTest.DoesNothingWithTooManyThreads 14: [ OK ] ThreadAffinityTest.DoesNothingWithTooManyThreads (0 ms) 14: [ RUN ] ThreadAffinityTest.DoesNothingWithTooLargeOffset @@ -9369,20 +9404,20 @@ 14: NOTE: Affinity setting failed. 14: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread (0 ms) 14: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithAuto -14: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithAuto (18 ms) +14: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithAuto (0 ms) 14: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced -14: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced (4 ms) +14: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced (1 ms) 14: [ RUN ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads -14: [ OK ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads (12 ms) +14: [ OK ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads (0 ms) 14: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing 14: NOTE: Affinity setting for 1/2 threads failed. -14: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing (16 ms) -14: [----------] 17 tests from ThreadAffinityTest (52 ms total) +14: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing (0 ms) +14: [----------] 17 tests from ThreadAffinityTest (3 ms total) 14: 14: [----------] Global test environment tear-down -14: [==========] 17 tests from 1 test case ran. (52 ms total) +14: [==========] 17 tests from 1 test case ran. (3 ms total) 14: [ PASSED ] 17 tests. -14/54 Test #14: MdrunUtilityUnitTests ............... Passed 0.10 sec +14/54 Test #14: MdrunUtilityUnitTests ............... Passed 0.02 sec test 15 Start 15: MdrunUtilityMpiUnitTests @@ -9392,40 +9427,40 @@ 15: [----------] Global test environment set-up. 15: [----------] 6 tests from ThreadAffinityMultiRankTest 15: [ RUN ] ThreadAffinityMultiRankTest.PinsWholeNode -15: [ OK ] ThreadAffinityMultiRankTest.PinsWholeNode (67 ms) +15: [ OK ] ThreadAffinityMultiRankTest.PinsWholeNode (3 ms) 15: [ RUN ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride -15: [ OK ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride (72 ms) +15: [ OK ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride (2 ms) 15: [ RUN ] ThreadAffinityMultiRankTest.PinsTwoNodes -15: [ OK ] ThreadAffinityMultiRankTest.PinsTwoNodes (64 ms) +15: [ OK ] ThreadAffinityMultiRankTest.PinsTwoNodes (1 ms) 15: [ RUN ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled -15: [ OK ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled (57 ms) +15: [ OK ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled (1 ms) 15: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto -15: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto (174 ms) +15: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto (1 ms) 15: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce -15: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce (117 ms) -15: [----------] 6 tests from ThreadAffinityMultiRankTest (552 ms total) +15: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce (1 ms) +15: [----------] 6 tests from ThreadAffinityMultiRankTest (9 ms total) 15: 15: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly (86 ms) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly (1 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly (120 ms) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly (1 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster (86 ms) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster (1 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly (134 ms) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly (1 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly (38 ms) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly (1 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly (49 ms) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly (2 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly (113 ms) -15: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest (627 ms total) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly (1 ms) +15: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest (8 ms total) 15: 15: [----------] Global test environment tear-down -15: [==========] 13 tests from 2 test cases ran. (1179 ms total) +15: [==========] 13 tests from 2 test cases ran. (17 ms total) 15: [ PASSED ] 13 tests. -15/54 Test #15: MdrunUtilityMpiUnitTests ............ Passed 1.22 sec +15/54 Test #15: MdrunUtilityMpiUnitTests ............ Passed 0.03 sec test 16 Start 16: MDSpanTests @@ -9531,7 +9566,7 @@ 17: [----------] Global test environment set-up. 17: [----------] 6 tests from TextTableFormatterTest 17: [ RUN ] TextTableFormatterTest.HandlesBasicCase -17: [ OK ] TextTableFormatterTest.HandlesBasicCase (0 ms) +17: [ OK ] TextTableFormatterTest.HandlesBasicCase (1 ms) 17: [ RUN ] TextTableFormatterTest.HandlesEmptyColumnTitles 17: [ OK ] TextTableFormatterTest.HandlesEmptyColumnTitles (0 ms) 17: [ RUN ] TextTableFormatterTest.HandlesIndentation @@ -9542,7 +9577,7 @@ 17: [ OK ] TextTableFormatterTest.HandlesLastColumnFolding (0 ms) 17: [ RUN ] TextTableFormatterTest.HandlesEmptyColumns 17: [ OK ] TextTableFormatterTest.HandlesEmptyColumns (0 ms) -17: [----------] 6 tests from TextTableFormatterTest (0 ms total) +17: [----------] 6 tests from TextTableFormatterTest (1 ms total) 17: 17: [----------] 3 tests from HelpManagerTest 17: [ RUN ] HelpManagerTest.HandlesRootTopic @@ -9550,8 +9585,8 @@ 17: [ RUN ] HelpManagerTest.HandlesSubTopics 17: [ OK ] HelpManagerTest.HandlesSubTopics (0 ms) 17: [ RUN ] HelpManagerTest.HandlesInvalidTopics -17: [ OK ] HelpManagerTest.HandlesInvalidTopics (1 ms) -17: [----------] 3 tests from HelpManagerTest (1 ms total) +17: [ OK ] HelpManagerTest.HandlesInvalidTopics (0 ms) +17: [----------] 3 tests from HelpManagerTest (0 ms total) 17: 17: [----------] 2 tests from HelpTopicFormattingTest 17: [ RUN ] HelpTopicFormattingTest.FormatsSimpleTopic @@ -9566,7 +9601,7 @@ 17: [ RUN ] HelpWriterContextTest.FormatsRstStyleParagraphs 17: [ OK ] HelpWriterContextTest.FormatsRstStyleParagraphs (0 ms) 17: [ RUN ] HelpWriterContextTest.CleansUpExtraWhitespace -17: [ OK ] HelpWriterContextTest.CleansUpExtraWhitespace (0 ms) +17: [ OK ] HelpWriterContextTest.CleansUpExtraWhitespace (1 ms) 17: [ RUN ] HelpWriterContextTest.FormatsLiteralText 17: [ OK ] HelpWriterContextTest.FormatsLiteralText (0 ms) 17: [ RUN ] HelpWriterContextTest.FormatsLiteralTextAtBeginning @@ -9578,7 +9613,7 @@ 17: [ RUN ] HelpWriterContextTest.FormatsEnumeratedList 17: [ OK ] HelpWriterContextTest.FormatsEnumeratedList (0 ms) 17: [ RUN ] HelpWriterContextTest.FormatsSimpleTable -17: [ OK ] HelpWriterContextTest.FormatsSimpleTable (1 ms) +17: [ OK ] HelpWriterContextTest.FormatsSimpleTable (0 ms) 17: [ RUN ] HelpWriterContextTest.FormatsGridTable 17: [ OK ] HelpWriterContextTest.FormatsGridTable (0 ms) 17: [ RUN ] HelpWriterContextTest.FormatsTitles @@ -9588,7 +9623,7 @@ 17: [----------] Global test environment tear-down 17: [==========] 22 tests from 4 test cases ran. (2 ms total) 17: [ PASSED ] 22 tests. -17/54 Test #17: OnlineHelpUnitTests ................. Passed 0.03 sec +17/54 Test #17: OnlineHelpUnitTests ................. Passed 0.02 sec test 18 Start 18: OptionsUnitTests @@ -9607,7 +9642,7 @@ 18: [ OK ] AbstractOptionStorageTest.HandlesTooManyValueAddition (0 ms) 18: [ RUN ] AbstractOptionStorageTest.AllowsEmptyValues 18: [ OK ] AbstractOptionStorageTest.AllowsEmptyValues (0 ms) -18: [----------] 5 tests from AbstractOptionStorageTest (1 ms total) +18: [----------] 5 tests from AbstractOptionStorageTest (0 ms total) 18: 18: [----------] 8 tests from FileNameOptionTest 18: [ RUN ] FileNameOptionTest.HandlesRequiredDefaultValueWithoutExtension @@ -9659,7 +9694,7 @@ 18: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalFromDefaultNameOptionBasedOnExistingFile (0 ms) 18: [ RUN ] FileNameOptionManagerTest.DefaultNameOptionWorksWithoutInputChecking 18: [ OK ] FileNameOptionManagerTest.DefaultNameOptionWorksWithoutInputChecking (0 ms) -18: [----------] 15 tests from FileNameOptionManagerTest (0 ms total) +18: [----------] 15 tests from FileNameOptionManagerTest (1 ms total) 18: 18: [----------] 1 test from OptionsTest 18: [ RUN ] OptionsTest.FailsOnNonsafeStorage @@ -9685,7 +9720,7 @@ 18: [ OK ] OptionsAssignerTest.HandlesSections (0 ms) 18: [ RUN ] OptionsAssignerTest.HandlesMultipleSources 18: [ OK ] OptionsAssignerTest.HandlesMultipleSources (0 ms) -18: [----------] 9 tests from OptionsAssignerTest (1 ms total) +18: [----------] 9 tests from OptionsAssignerTest (0 ms total) 18: 18: [----------] 4 tests from OptionsAssignerBooleanTest 18: [ RUN ] OptionsAssignerBooleanTest.StoresYesValue @@ -9765,7 +9800,7 @@ 18: [ RUN ] OptionsAssignerEnumTest.StoresSingleValue 18: [ OK ] OptionsAssignerEnumTest.StoresSingleValue (0 ms) 18: [ RUN ] OptionsAssignerEnumTest.StoresVectorValues -18: [ OK ] OptionsAssignerEnumTest.StoresVectorValues (3 ms) +18: [ OK ] OptionsAssignerEnumTest.StoresVectorValues (0 ms) 18: [ RUN ] OptionsAssignerEnumTest.HandlesInitialValueOutOfRange 18: [ OK ] OptionsAssignerEnumTest.HandlesInitialValueOutOfRange (0 ms) 18: [ RUN ] OptionsAssignerEnumTest.HandlesEnumDefaultValue @@ -9774,11 +9809,11 @@ 18: [ OK ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVariable (0 ms) 18: [ RUN ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVector 18: [ OK ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVector (0 ms) -18: [----------] 6 tests from OptionsAssignerEnumTest (3 ms total) +18: [----------] 6 tests from OptionsAssignerEnumTest (0 ms total) 18: 18: [----------] 8 tests from RepeatingOptionSectionTest 18: [ RUN ] RepeatingOptionSectionTest.HandlesNoInstance -18: [ OK ] RepeatingOptionSectionTest.HandlesNoInstance (1 ms) +18: [ OK ] RepeatingOptionSectionTest.HandlesNoInstance (0 ms) 18: [ RUN ] RepeatingOptionSectionTest.HandlesNoInstanceWithRequiredOption 18: [ OK ] RepeatingOptionSectionTest.HandlesNoInstanceWithRequiredOption (0 ms) 18: [ RUN ] RepeatingOptionSectionTest.HandlesSingleInstance @@ -9793,7 +9828,7 @@ 18: [ OK ] RepeatingOptionSectionTest.HandlesUnsetOptionWithExplicitDefault (0 ms) 18: [ RUN ] RepeatingOptionSectionTest.HandlesNestedSections 18: [ OK ] RepeatingOptionSectionTest.HandlesNestedSections (0 ms) -18: [----------] 8 tests from RepeatingOptionSectionTest (1 ms total) +18: [----------] 8 tests from RepeatingOptionSectionTest (0 ms total) 18: 18: [----------] 1 test from TimeUnitManagerTest 18: [ RUN ] TimeUnitManagerTest.BasicOperations @@ -9808,8 +9843,8 @@ 18: [ RUN ] TimeUnitBehaviorTest.ScalesUserInputWithMultipleSources 18: [ OK ] TimeUnitBehaviorTest.ScalesUserInputWithMultipleSources (0 ms) 18: [ RUN ] TimeUnitBehaviorTest.TimeUnitOptionWorks -18: [ OK ] TimeUnitBehaviorTest.TimeUnitOptionWorks (0 ms) -18: [----------] 4 tests from TimeUnitBehaviorTest (0 ms total) +18: [ OK ] TimeUnitBehaviorTest.TimeUnitOptionWorks (1 ms) +18: [----------] 4 tests from TimeUnitBehaviorTest (1 ms total) 18: 18: [----------] 2 tests from TreeValueSupportAssignTest 18: [ RUN ] TreeValueSupportAssignTest.AssignsFromTree @@ -9842,14 +9877,14 @@ 18: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultVectorValues 18: [ OK ] TreeValueSupportAdjustTest.FillsDefaultVectorValues (0 ms) 18: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultObjectValues -18: [ OK ] TreeValueSupportAdjustTest.FillsDefaultObjectValues (1 ms) +18: [ OK ] TreeValueSupportAdjustTest.FillsDefaultObjectValues (0 ms) 18: [ RUN ] TreeValueSupportAdjustTest.NormalizesValues 18: [ OK ] TreeValueSupportAdjustTest.NormalizesValues (0 ms) 18: [ RUN ] TreeValueSupportAdjustTest.MergesDefaultValues 18: [ OK ] TreeValueSupportAdjustTest.MergesDefaultValues (0 ms) 18: [ RUN ] TreeValueSupportAdjustTest.OrdersValues 18: [ OK ] TreeValueSupportAdjustTest.OrdersValues (0 ms) -18: [----------] 6 tests from TreeValueSupportAdjustTest (1 ms total) +18: [----------] 6 tests from TreeValueSupportAdjustTest (0 ms total) 18: 18: [----------] 8 tests from TreeValueSupportTest 18: [ RUN ] TreeValueSupportTest.SupportsBooleanOption @@ -9861,9 +9896,9 @@ 18: [ RUN ] TreeValueSupportTest.SupportsStringOption 18: [ OK ] TreeValueSupportTest.SupportsStringOption (0 ms) 18: [ RUN ] TreeValueSupportTest.SupportsFloatOption -18: [ OK ] TreeValueSupportTest.SupportsFloatOption (0 ms) +18: [ OK ] TreeValueSupportTest.SupportsFloatOption (1 ms) 18: [ RUN ] TreeValueSupportTest.SupportsDoubleOption -18: [ OK ] TreeValueSupportTest.SupportsDoubleOption (1 ms) +18: [ OK ] TreeValueSupportTest.SupportsDoubleOption (0 ms) 18: [ RUN ] TreeValueSupportTest.SupportsEnumIntOption 18: [ OK ] TreeValueSupportTest.SupportsEnumIntOption (0 ms) 18: [ RUN ] TreeValueSupportTest.SupportsEnumOption @@ -9871,9 +9906,9 @@ 18: [----------] 8 tests from TreeValueSupportTest (1 ms total) 18: 18: [----------] Global test environment tear-down -18: [==========] 110 tests from 18 test cases ran. (8 ms total) +18: [==========] 110 tests from 18 test cases ran. (4 ms total) 18: [ PASSED ] 110 tests. -18/54 Test #18: OptionsUnitTests .................... Passed 0.07 sec +18/54 Test #18: OptionsUnitTests .................... Passed 0.03 sec test 19 Start 19: PbcutilUnitTest @@ -9896,7 +9931,7 @@ 19: [----------] Global test environment tear-down 19: [==========] 3 tests from 2 test cases ran. (0 ms total) 19: [ PASSED ] 3 tests. -19/54 Test #19: PbcutilUnitTest ..................... Passed 0.02 sec +19/54 Test #19: PbcutilUnitTest ..................... Passed 0.01 sec test 20 Start 20: RandomUnitTests @@ -9950,17 +9985,17 @@ 20: [ RUN ] TabulatedNormalDistributionTest.OutputDouble14 20: [ OK ] TabulatedNormalDistributionTest.OutputDouble14 (0 ms) 20: [ RUN ] TabulatedNormalDistributionTest.Logical -20: [ OK ] TabulatedNormalDistributionTest.Logical (1 ms) +20: [ OK ] TabulatedNormalDistributionTest.Logical (0 ms) 20: [ RUN ] TabulatedNormalDistributionTest.Reset 20: [ OK ] TabulatedNormalDistributionTest.Reset (0 ms) 20: [ RUN ] TabulatedNormalDistributionTest.AltParam 20: [ OK ] TabulatedNormalDistributionTest.AltParam (0 ms) -20: [----------] 6 tests from TabulatedNormalDistributionTest (4 ms total) +20: [----------] 6 tests from TabulatedNormalDistributionTest (0 ms total) 20: 20: [----------] 1 test from TabulatedNormalDistributionTableTest 20: [ RUN ] TabulatedNormalDistributionTableTest.HasValidProperties -20: [ OK ] TabulatedNormalDistributionTableTest.HasValidProperties (1 ms) -20: [----------] 1 test from TabulatedNormalDistributionTableTest (1 ms total) +20: [ OK ] TabulatedNormalDistributionTableTest.HasValidProperties (2 ms) +20: [----------] 1 test from TabulatedNormalDistributionTableTest (2 ms total) 20: 20: [----------] 6 tests from ThreeFry2x64Test 20: [ RUN ] ThreeFry2x64Test.Logical @@ -10005,7 +10040,7 @@ 20: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/0 20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/0 (0 ms) 20: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/1 -20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/1 (1 ms) +20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/1 (0 ms) 20: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/2 20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/2 (0 ms) 20: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/0 @@ -10013,7 +10048,7 @@ 20: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/1 20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/1 (0 ms) 20: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/2 -20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/2 (0 ms) +20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/2 (1 ms) 20: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/0 20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/0 (0 ms) 20: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/1 @@ -10023,9 +10058,9 @@ 20: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test (1 ms total) 20: 20: [----------] Global test environment tear-down -20: [==========] 44 tests from 10 test cases ran. (8 ms total) +20: [==========] 44 tests from 10 test cases ran. (3 ms total) 20: [ PASSED ] 44 tests. -20/54 Test #20: RandomUnitTests ..................... Passed 0.04 sec +20/54 Test #20: RandomUnitTests ..................... Passed 0.03 sec test 21 Start 21: RestraintTests @@ -10051,54 +10086,54 @@ 22: [----------] Global test environment set-up. 22: [----------] 10 tests from SplineTableTest/0, where TypeParam = gmx::QuadraticSplineTable 22: [ RUN ] SplineTableTest/0.HandlesIncorrectInput -22: [ OK ] SplineTableTest/0.HandlesIncorrectInput (2 ms) +22: [ OK ] SplineTableTest/0.HandlesIncorrectInput (1 ms) 22: [ RUN ] SplineTableTest/0.Sinc -22: [ OK ] SplineTableTest/0.Sinc (0 ms) +22: [ OK ] SplineTableTest/0.Sinc (1 ms) 22: [ RUN ] SplineTableTest/0.LJ12 -22: [ OK ] SplineTableTest/0.LJ12 (17 ms) +22: [ OK ] SplineTableTest/0.LJ12 (13 ms) 22: [ RUN ] SplineTableTest/0.PmeCorrection -22: [ OK ] SplineTableTest/0.PmeCorrection (2 ms) +22: [ OK ] SplineTableTest/0.PmeCorrection (1 ms) 22: [ RUN ] SplineTableTest/0.HandlesIncorrectNumericalInput 22: [ OK ] SplineTableTest/0.HandlesIncorrectNumericalInput (0 ms) 22: [ RUN ] SplineTableTest/0.NumericalInputPmeCorr 22: [ OK ] SplineTableTest/0.NumericalInputPmeCorr (1 ms) 22: [ RUN ] SplineTableTest/0.TwoFunctions -22: [ OK ] SplineTableTest/0.TwoFunctions (31 ms) +22: [ OK ] SplineTableTest/0.TwoFunctions (24 ms) 22: [ RUN ] SplineTableTest/0.ThreeFunctions -22: [ OK ] SplineTableTest/0.ThreeFunctions (32 ms) +22: [ OK ] SplineTableTest/0.ThreeFunctions (27 ms) 22: [ RUN ] SplineTableTest/0.Simd -22: [ OK ] SplineTableTest/0.Simd (7 ms) +22: [ OK ] SplineTableTest/0.Simd (5 ms) 22: [ RUN ] SplineTableTest/0.SimdTwoFunctions -22: [ OK ] SplineTableTest/0.SimdTwoFunctions (26 ms) -22: [----------] 10 tests from SplineTableTest/0 (120 ms total) +22: [ OK ] SplineTableTest/0.SimdTwoFunctions (23 ms) +22: [----------] 10 tests from SplineTableTest/0 (97 ms total) 22: 22: [----------] 10 tests from SplineTableTest/1, where TypeParam = gmx::CubicSplineTable 22: [ RUN ] SplineTableTest/1.HandlesIncorrectInput 22: [ OK ] SplineTableTest/1.HandlesIncorrectInput (1 ms) 22: [ RUN ] SplineTableTest/1.Sinc -22: [ OK ] SplineTableTest/1.Sinc (0 ms) +22: [ OK ] SplineTableTest/1.Sinc (1 ms) 22: [ RUN ] SplineTableTest/1.LJ12 22: [ OK ] SplineTableTest/1.LJ12 (2 ms) 22: [ RUN ] SplineTableTest/1.PmeCorrection -22: [ OK ] SplineTableTest/1.PmeCorrection (2 ms) +22: [ OK ] SplineTableTest/1.PmeCorrection (1 ms) 22: [ RUN ] SplineTableTest/1.HandlesIncorrectNumericalInput 22: [ OK ] SplineTableTest/1.HandlesIncorrectNumericalInput (0 ms) 22: [ RUN ] SplineTableTest/1.NumericalInputPmeCorr -22: [ OK ] SplineTableTest/1.NumericalInputPmeCorr (1 ms) +22: [ OK ] SplineTableTest/1.NumericalInputPmeCorr (0 ms) 22: [ RUN ] SplineTableTest/1.TwoFunctions -22: [ OK ] SplineTableTest/1.TwoFunctions (3 ms) +22: [ OK ] SplineTableTest/1.TwoFunctions (4 ms) 22: [ RUN ] SplineTableTest/1.ThreeFunctions -22: [ OK ] SplineTableTest/1.ThreeFunctions (5 ms) +22: [ OK ] SplineTableTest/1.ThreeFunctions (4 ms) 22: [ RUN ] SplineTableTest/1.Simd 22: [ OK ] SplineTableTest/1.Simd (1 ms) 22: [ RUN ] SplineTableTest/1.SimdTwoFunctions -22: [ OK ] SplineTableTest/1.SimdTwoFunctions (4 ms) -22: [----------] 10 tests from SplineTableTest/1 (19 ms total) +22: [ OK ] SplineTableTest/1.SimdTwoFunctions (3 ms) +22: [----------] 10 tests from SplineTableTest/1 (17 ms total) 22: 22: [----------] Global test environment tear-down -22: [==========] 20 tests from 2 test cases ran. (139 ms total) +22: [==========] 20 tests from 2 test cases ran. (114 ms total) 22: [ PASSED ] 20 tests. -22/54 Test #22: TableUnitTests ...................... Passed 0.16 sec +22/54 Test #22: TableUnitTests ...................... Passed 0.14 sec test 23 Start 23: TaskAssignmentUnitTests @@ -10163,7 +10198,7 @@ 24: [----------] Global test environment tear-down 24: [==========] 11 tests from 3 test cases ran. (0 ms total) 24: [ PASSED ] 11 tests. -24/54 Test #24: TopologyTest ........................ Passed 0.03 sec +24/54 Test #24: TopologyTest ........................ Passed 0.01 sec test 25 Start 25: PullTest @@ -10185,9 +10220,9 @@ 25: [----------] 5 tests from PullTest (0 ms total) 25: 25: [----------] Global test environment tear-down -25: [==========] 5 tests from 1 test case ran. (4 ms total) +25: [==========] 5 tests from 1 test case ran. (0 ms total) 25: [ PASSED ] 5 tests. -25/54 Test #25: PullTest ............................ Passed 0.04 sec +25/54 Test #25: PullTest ............................ Passed 0.02 sec test 26 Start 26: AwhTest @@ -10197,44 +10232,44 @@ 26: [----------] Global test environment set-up. 26: [----------] 1 test from BiasTest 26: [ RUN ] BiasTest.DetectsCovering -26: [ OK ] BiasTest.DetectsCovering (0 ms) -26: [----------] 1 test from BiasTest (0 ms total) +26: [ OK ] BiasTest.DetectsCovering (1 ms) +26: [----------] 1 test from BiasTest (1 ms total) 26: 26: [----------] 1 test from gridTest 26: [ RUN ] gridTest.neighborhood -26: [ OK ] gridTest.neighborhood (2 ms) -26: [----------] 1 test from gridTest (2 ms total) +26: [ OK ] gridTest.neighborhood (1 ms) +26: [----------] 1 test from gridTest (1 ms total) 26: 26: [----------] 8 tests from WithParameters/BiasTest 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/0 -26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/0 (0 ms) +26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/0 (1 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/1 -26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/1 (1 ms) +26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/1 (0 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/2 -26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/2 (0 ms) +26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/2 (1 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/3 -26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/3 (1 ms) +26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/3 (0 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/4 -26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/4 (0 ms) +26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/4 (1 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/5 -26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/5 (1 ms) +26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/5 (0 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/6 -26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/6 (0 ms) +26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/6 (1 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/7 26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/7 (0 ms) -26: [----------] 8 tests from WithParameters/BiasTest (3 ms total) +26: [----------] 8 tests from WithParameters/BiasTest (4 ms total) 26: 26: [----------] 2 tests from WithParameters/BiasStateTest 26: [ RUN ] WithParameters/BiasStateTest.InitializesFromFile/0 -26: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/0 (1 ms) +26: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/0 (0 ms) 26: [ RUN ] WithParameters/BiasStateTest.InitializesFromFile/1 26: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/1 (0 ms) -26: [----------] 2 tests from WithParameters/BiasStateTest (1 ms total) +26: [----------] 2 tests from WithParameters/BiasStateTest (0 ms total) 26: 26: [----------] Global test environment tear-down 26: [==========] 12 tests from 4 test cases ran. (6 ms total) 26: [ PASSED ] 12 tests. -26/54 Test #26: AwhTest ............................. Passed 0.03 sec +26/54 Test #26: AwhTest ............................. Passed 0.02 sec test 27 Start 27: SimdUnitTests @@ -10357,7 +10392,7 @@ 27: 27: [----------] 16 tests from SimdFloatingpointUtilTest 27: [ RUN ] SimdFloatingpointUtilTest.gatherLoadTranspose4 -27: [ OK ] SimdFloatingpointUtilTest.gatherLoadTranspose4 (0 ms) +27: [ OK ] SimdFloatingpointUtilTest.gatherLoadTranspose4 (1 ms) 27: [ RUN ] SimdFloatingpointUtilTest.gatherLoadTranspose2 27: [ OK ] SimdFloatingpointUtilTest.gatherLoadTranspose2 (0 ms) 27: [ RUN ] SimdFloatingpointUtilTest.gatherLoadUTranspose3 @@ -10405,15 +10440,15 @@ 27: [ RUN ] SimdMathTest.copysign 27: [ OK ] SimdMathTest.copysign (0 ms) 27: [ RUN ] SimdMathTest.invsqrt -27: [ OK ] SimdMathTest.invsqrt (8 ms) +27: [ OK ] SimdMathTest.invsqrt (0 ms) 27: [ RUN ] SimdMathTest.maskzInvsqrt 27: [ OK ] SimdMathTest.maskzInvsqrt (0 ms) 27: [ RUN ] SimdMathTest.invsqrtPair -27: [ OK ] SimdMathTest.invsqrtPair (0 ms) +27: [ OK ] SimdMathTest.invsqrtPair (1 ms) 27: [ RUN ] SimdMathTest.sqrt -27: [ OK ] SimdMathTest.sqrt (1 ms) +27: [ OK ] SimdMathTest.sqrt (0 ms) 27: [ RUN ] SimdMathTest.sqrtUnsafe -27: [ OK ] SimdMathTest.sqrtUnsafe (0 ms) +27: [ OK ] SimdMathTest.sqrtUnsafe (1 ms) 27: [ RUN ] SimdMathTest.inv 27: [ OK ] SimdMathTest.inv (2 ms) 27: [ RUN ] SimdMathTest.maskzInv @@ -10421,15 +10456,15 @@ 27: [ RUN ] SimdMathTest.cbrt 27: [ OK ] SimdMathTest.cbrt (1 ms) 27: [ RUN ] SimdMathTest.invcbrt -27: [ OK ] SimdMathTest.invcbrt (2 ms) +27: [ OK ] SimdMathTest.invcbrt (1 ms) 27: [ RUN ] SimdMathTest.log2 -27: [ OK ] SimdMathTest.log2 (0 ms) +27: [ OK ] SimdMathTest.log2 (1 ms) 27: [ RUN ] SimdMathTest.log -27: [ OK ] SimdMathTest.log (1 ms) +27: [ OK ] SimdMathTest.log (0 ms) 27: [ RUN ] SimdMathTest.exp2 -27: [ OK ] SimdMathTest.exp2 (10 ms) +27: [ OK ] SimdMathTest.exp2 (2 ms) 27: [ RUN ] SimdMathTest.exp2Unsafe -27: [ OK ] SimdMathTest.exp2Unsafe (1 ms) +27: [ OK ] SimdMathTest.exp2Unsafe (0 ms) 27: [ RUN ] SimdMathTest.exp 27: [ OK ] SimdMathTest.exp (2 ms) 27: [ RUN ] SimdMathTest.expUnsafe @@ -10441,11 +10476,11 @@ 27: [ RUN ] SimdMathTest.erf 27: [ OK ] SimdMathTest.erf (1 ms) 27: [ RUN ] SimdMathTest.erfc -27: [ OK ] SimdMathTest.erfc (10 ms) +27: [ OK ] SimdMathTest.erfc (1 ms) 27: [ RUN ] SimdMathTest.sin -27: [ OK ] SimdMathTest.sin (1 ms) +27: [ OK ] SimdMathTest.sin (2 ms) 27: [ RUN ] SimdMathTest.cos -27: [ OK ] SimdMathTest.cos (2 ms) +27: [ OK ] SimdMathTest.cos (1 ms) 27: [ RUN ] SimdMathTest.tan 27: [ OK ] SimdMathTest.tan (1 ms) 27: [ RUN ] SimdMathTest.asin @@ -10457,33 +10492,33 @@ 27: [ RUN ] SimdMathTest.atan2 27: [ OK ] SimdMathTest.atan2 (0 ms) 27: [ RUN ] SimdMathTest.pmeForceCorrection -27: [ OK ] SimdMathTest.pmeForceCorrection (9 ms) +27: [ OK ] SimdMathTest.pmeForceCorrection (1 ms) 27: [ RUN ] SimdMathTest.pmePotentialCorrection 27: [ OK ] SimdMathTest.pmePotentialCorrection (0 ms) 27: [ RUN ] SimdMathTest.invsqrtSingleAccuracy -27: [ OK ] SimdMathTest.invsqrtSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.invsqrtSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.invsqrtPairSingleAccuracy -27: [ OK ] SimdMathTest.invsqrtPairSingleAccuracy (0 ms) +27: [ OK ] SimdMathTest.invsqrtPairSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.sqrtSingleAccuracy 27: [ OK ] SimdMathTest.sqrtSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.sqrtSingleAccuracyUnsafe -27: [ OK ] SimdMathTest.sqrtSingleAccuracyUnsafe (1 ms) +27: [ OK ] SimdMathTest.sqrtSingleAccuracyUnsafe (0 ms) 27: [ RUN ] SimdMathTest.invSingleAccuracy -27: [ OK ] SimdMathTest.invSingleAccuracy (2 ms) +27: [ OK ] SimdMathTest.invSingleAccuracy (3 ms) 27: [ RUN ] SimdMathTest.cbrtSingleAccuracy -27: [ OK ] SimdMathTest.cbrtSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.cbrtSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.invcbrtSingleAccuracy 27: [ OK ] SimdMathTest.invcbrtSingleAccuracy (2 ms) 27: [ RUN ] SimdMathTest.log2SingleAccuracy 27: [ OK ] SimdMathTest.log2SingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.logSingleAccuracy -27: [ OK ] SimdMathTest.logSingleAccuracy (8 ms) +27: [ OK ] SimdMathTest.logSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.exp2SingleAccuracy -27: [ OK ] SimdMathTest.exp2SingleAccuracy (2 ms) +27: [ OK ] SimdMathTest.exp2SingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.exp2SingleAccuracyUnsafe -27: [ OK ] SimdMathTest.exp2SingleAccuracyUnsafe (0 ms) +27: [ OK ] SimdMathTest.exp2SingleAccuracyUnsafe (1 ms) 27: [ RUN ] SimdMathTest.expSingleAccuracy -27: [ OK ] SimdMathTest.expSingleAccuracy (3 ms) +27: [ OK ] SimdMathTest.expSingleAccuracy (2 ms) 27: [ RUN ] SimdMathTest.expSingleAccuracyUnsafe 27: [ OK ] SimdMathTest.expSingleAccuracyUnsafe (0 ms) 27: [ RUN ] SimdMathTest.powSingleAccuracy @@ -10493,26 +10528,26 @@ 27: [ RUN ] SimdMathTest.erfSingleAccuracy 27: [ OK ] SimdMathTest.erfSingleAccuracy (2 ms) 27: [ RUN ] SimdMathTest.erfcSingleAccuracy -27: [ OK ] SimdMathTest.erfcSingleAccuracy (9 ms) +27: [ OK ] SimdMathTest.erfcSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.sinSingleAccuracy -27: [ OK ] SimdMathTest.sinSingleAccuracy (2 ms) +27: [ OK ] SimdMathTest.sinSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.cosSingleAccuracy -27: [ OK ] SimdMathTest.cosSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.cosSingleAccuracy (2 ms) 27: [ RUN ] SimdMathTest.tanSingleAccuracy -27: [ OK ] SimdMathTest.tanSingleAccuracy (2 ms) +27: [ OK ] SimdMathTest.tanSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.asinSingleAccuracy 27: [ OK ] SimdMathTest.asinSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.acosSingleAccuracy 27: [ OK ] SimdMathTest.acosSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.atanSingleAccuracy -27: [ OK ] SimdMathTest.atanSingleAccuracy (8 ms) +27: [ OK ] SimdMathTest.atanSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.atan2SingleAccuracy 27: [ OK ] SimdMathTest.atan2SingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.pmeForceCorrectionSingleAccuracy 27: [ OK ] SimdMathTest.pmeForceCorrectionSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.pmePotentialCorrectionSingleAccuracy 27: [ OK ] SimdMathTest.pmePotentialCorrectionSingleAccuracy (1 ms) -27: [----------] 56 tests from SimdMathTest (106 ms total) +27: [----------] 56 tests from SimdMathTest (44 ms total) 27: 27: [----------] 1 test from EmptyArrayRefTest 27: [ RUN ] EmptyArrayRefTest.IsEmpty @@ -10689,7 +10724,7 @@ 27: [ OK ] Simd4FloatingpointTest.dotProduct (0 ms) 27: [ RUN ] Simd4FloatingpointTest.transpose 27: [ OK ] Simd4FloatingpointTest.transpose (0 ms) -27: [----------] 32 tests from Simd4FloatingpointTest (1 ms total) +27: [----------] 32 tests from Simd4FloatingpointTest (0 ms total) 27: 27: [----------] 1 test from Simd4VectorOperationsTest 27: [ RUN ] Simd4VectorOperationsTest.norm2 @@ -10786,7 +10821,7 @@ 27: [ OK ] SimdScalarTest.cvtIB2B (0 ms) 27: [ RUN ] SimdScalarTest.expandScalarsToTriplets 27: [ OK ] SimdScalarTest.expandScalarsToTriplets (0 ms) -27: [----------] 41 tests from SimdScalarTest (0 ms total) +27: [----------] 41 tests from SimdScalarTest (1 ms total) 27: 27: [----------] 8 tests from SimdScalarUtilTest 27: [ RUN ] SimdScalarUtilTest.gatherLoadTranspose @@ -10885,9 +10920,9 @@ 27: [----------] 37 tests from SimdScalarMathTest (0 ms total) 27: 27: [----------] Global test environment tear-down -27: [==========] 288 tests from 22 test cases ran. (108 ms total) +27: [==========] 288 tests from 22 test cases ran. (46 ms total) 27: [ PASSED ] 288 tests. -27/54 Test #27: SimdUnitTests ....................... Passed 0.14 sec +27/54 Test #27: SimdUnitTests ....................... Passed 0.08 sec test 28 Start 28: CompatibilityHelpersTests @@ -11003,7 +11038,7 @@ 28: sizeof( optional ): 32 (16) 28: sizeof( optional ): 2 (1) 28: [ OK ] OptionalTest.ShowSizeDependingOnBaseType (0 ms) -28: [----------] 45 tests from OptionalTest (0 ms total) +28: [----------] 45 tests from OptionalTest (1 ms total) 28: 28: [----------] 7 tests from MakeOptionalTest 28: [ RUN ] MakeOptionalTest.CanMoveAssignBetweenEngagedAndDisengagedOptionals @@ -11100,7 +11135,7 @@ 28: [----------] 1 test from NotNullAssignment 28: [ RUN ] NotNullAssignment.Works 28: [ OK ] NotNullAssignment.Works (0 ms) -28: [----------] 1 test from NotNullAssignment (0 ms total) +28: [----------] 1 test from NotNullAssignment (1 ms total) 28: 28: [----------] 1 test from MakeNotNull 28: [ RUN ] MakeNotNull.Works @@ -11301,9 +11336,9 @@ 29: [----------] Global test environment set-up. 29: [----------] 5 tests from Entropy 29: [ RUN ] Entropy.Schlitter_300_NoLinear -29: [ OK ] Entropy.Schlitter_300_NoLinear (1 ms) +29: [ OK ] Entropy.Schlitter_300_NoLinear (0 ms) 29: [ RUN ] Entropy.Schlitter_300_Linear -29: [ OK ] Entropy.Schlitter_300_Linear (0 ms) +29: [ OK ] Entropy.Schlitter_300_Linear (1 ms) 29: [ RUN ] Entropy.QuasiHarmonic_300_NoLinear 29: [ OK ] Entropy.QuasiHarmonic_300_NoLinear (0 ms) 29: [ RUN ] Entropy.QuasiHarmonic_200_NoLinear @@ -11360,7 +11395,7 @@ 29: Reading frame 0 time 0.000 Last frame 0 time 0.000 29: Selected 0: 'atom1' 29: Selected 1: 'atom2' -29: [ OK ] MindistTest.mindistPicksUpContacts (1 ms) +29: [ OK ] MindistTest.mindistPicksUpContacts (0 ms) 29: [ RUN ] MindistTest.ngWorks 29: Group 0 ( atom1) has 1 elements 29: Group 1 ( atom2) has 1 elements @@ -11373,7 +11408,7 @@ 29: Selected 0: 'atom1' 29: Selected 1: 'atom2' 29: Selected 2: 'atom3' -29: [ OK ] MindistTest.ngWorks (0 ms) +29: [ OK ] MindistTest.ngWorks (1 ms) 29: [ RUN ] MindistTest.groupWorks 29: Group 0 ( atom1) has 1 elements 29: Group 1 ( atom2) has 1 elements @@ -11397,7 +11432,7 @@ 29: Reading frame 0 time 0.000 Last frame 0 time 0.000 29: Selected 2: 'atom3' 29: Selected 3: 'atoms12' -29: [ OK ] MindistTest.maxDistWorks (8 ms) +29: [ OK ] MindistTest.maxDistWorks (0 ms) 29: [ RUN ] MindistTest.noPbcWorks 29: Group 0 ( atom1) has 1 elements 29: Group 1 ( atom2) has 1 elements @@ -11409,7 +11444,7 @@ 29: Reading frame 0 time 0.000 Last frame 0 time 0.000 29: Selected 0: 'atom1' 29: Selected 1: 'atom2' -29: [ OK ] MindistTest.noPbcWorks (0 ms) +29: [ OK ] MindistTest.noPbcWorks (1 ms) 29: [ RUN ] MindistTest.resPerTimeWorks 29: Group 0 ( atom1) has 1 elements 29: Group 1 ( atom2) has 1 elements @@ -11421,7 +11456,7 @@ 29: Reading frame 0 time 0.000 Last frame 0 time 0.000 29: Selected 3: 'atoms12' 29: Selected 2: 'atom3' -29: [ OK ] MindistTest.resPerTimeWorks (1 ms) +29: [ OK ] MindistTest.resPerTimeWorks (0 ms) 29: [ RUN ] MindistTest.matrixWorks 29: Group 0 ( atom1) has 1 elements 29: Group 1 ( atom2) has 1 elements @@ -11433,8 +11468,8 @@ 29: Reading frame 0 time 0.000 Last frame 0 time 0.000 29: Selected 5: 'atoms123' 29: Special case: making distance matrix between all atoms in group atoms123 -29: [ OK ] MindistTest.matrixWorks (0 ms) -29: [----------] 10 tests from MindistTest (14 ms total) +29: [ OK ] MindistTest.matrixWorks (1 ms) +29: [----------] 10 tests from MindistTest (6 ms total) 29: 29: [----------] 3 tests from MsdTest 29: [ RUN ] MsdTest.threeDimensionalDiffusion @@ -11449,7 +11484,7 @@ 29: Fitting from 1 to 8 ps 29: 29: D[ particles] 4.0000 (+/- 0.0000) 1e-5 cm^2/s -29: [ OK ] MsdTest.threeDimensionalDiffusion (1 ms) +29: [ OK ] MsdTest.threeDimensionalDiffusion (0 ms) 29: [ RUN ] MsdTest.twoDimensionalDiffusion 29: 29: Select a group to calculate mean squared displacement for: @@ -11485,7 +11520,7 @@ 29: For a correct single-point energy evaluation with nsteps = 0, use 29: continuation = yes to avoid constraining the input coordinates. 29: -29: Setting the LD random seed to 1533534207 +29: Setting the LD random seed to -881871059 29: Generated 330891 of the 330891 non-bonded parameter combinations 29: Generating 1-4 interactions: fudge = 0.5 29: Generated 330891 of the 330891 1-4 parameter combinations @@ -11522,14 +11557,14 @@ 29: Fitting from 0.008 to 0.088 ps 29: 29: D[ water] 6.5741 (+/- 0.7753) 1e-5 cm^2/s -29: [ OK ] MsdMolTest.diffMolMassWeighted (1038 ms) +29: [ OK ] MsdMolTest.diffMolMassWeighted (567 ms) 29: [ RUN ] MsdMolTest.diffMolNonMassWeighted 29: 29: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests/Testing/Temporary/MsdMolTest_diffMolNonMassWeighted.mdp]: 29: For a correct single-point energy evaluation with nsteps = 0, use 29: continuation = yes to avoid constraining the input coordinates. 29: -29: Setting the LD random seed to 1466629715 +29: Setting the LD random seed to -510190594 29: Generated 330891 of the 330891 non-bonded parameter combinations 29: Generating 1-4 interactions: fudge = 0.5 29: Generated 330891 of the 330891 1-4 parameter combinations @@ -11566,14 +11601,14 @@ 29: Fitting from 0.008 to 0.088 ps 29: 29: D[ water] 6.5741 (+/- 0.7753) 1e-5 cm^2/s -29: [ OK ] MsdMolTest.diffMolNonMassWeighted (949 ms) +29: [ OK ] MsdMolTest.diffMolNonMassWeighted (541 ms) 29: [ RUN ] MsdMolTest.diffMolSelected 29: 29: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxana/tests/Testing/Temporary/MsdMolTest_diffMolSelected.mdp]: 29: For a correct single-point energy evaluation with nsteps = 0, use 29: continuation = yes to avoid constraining the input coordinates. 29: -29: Setting the LD random seed to -41959458 +29: Setting the LD random seed to -805722438 29: Generated 330891 of the 330891 non-bonded parameter combinations 29: Generating 1-4 interactions: fudge = 0.5 29: Generated 330891 of the 330891 1-4 parameter combinations @@ -11610,8 +11645,8 @@ 29: Fitting from 0.008 to 0.088 ps 29: 29: D[ mol] 7.8614 (+/- 1.5618) 1e-5 cm^2/s -29: [ OK ] MsdMolTest.diffMolSelected (476 ms) -29: [----------] 3 tests from MsdMolTest (2463 ms total) +29: [ OK ] MsdMolTest.diffMolSelected (539 ms) +29: [----------] 3 tests from MsdMolTest (1648 ms total) 29: 29: [----------] 6 tests from NoFatalErrorWhenWritingFrom/GmxTraj 29: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/0 @@ -11628,14 +11663,14 @@ 29: Group 2 ( SOL) has 6 elements 29: Select a group: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Selected 0: 'System' -29: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/1 (3 ms) +29: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/1 (1 ms) 29: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/2 29: Group 0 ( System) has 6 elements 29: Group 1 ( Water) has 6 elements 29: Group 2 ( SOL) has 6 elements 29: Select a group: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Selected 0: 'System' -29: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/2 (2 ms) +29: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/2 (1 ms) 29: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/3 29: Group 0 ( System) has 6 elements 29: Group 1 ( Water) has 6 elements @@ -11659,12 +11694,12 @@ 29: Select a group: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Selected 0: 'System' 29: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/5 (1 ms) -29: [----------] 6 tests from NoFatalErrorWhenWritingFrom/GmxTraj (9 ms total) +29: [----------] 6 tests from NoFatalErrorWhenWritingFrom/GmxTraj (6 ms total) 29: 29: [----------] Global test environment tear-down -29: [==========] 27 tests from 5 test cases ran. (2489 ms total) +29: [==========] 27 tests from 5 test cases ran. (1663 ms total) 29: [ PASSED ] 27 tests. -29/54 Test #29: GmxAnaTest .......................... Passed 2.53 sec +29/54 Test #29: GmxAnaTest .......................... Passed 1.68 sec test 30 Start 30: GmxPreprocessTests @@ -11676,7 +11711,7 @@ 30: [ RUN ] GenconfTest.nbox_Works 30: [ OK ] GenconfTest.nbox_Works (0 ms) 30: [ RUN ] GenconfTest.nbox_norenumber_Works -30: [ OK ] GenconfTest.nbox_norenumber_Works (0 ms) +30: [ OK ] GenconfTest.nbox_norenumber_Works (1 ms) 30: [ RUN ] GenconfTest.nbox_dist_Works 30: [ OK ] GenconfTest.nbox_dist_Works (1 ms) 30: [ RUN ] GenconfTest.nbox_rot_Works @@ -11708,7 +11743,7 @@ 30: For a correct single-point energy evaluation with nsteps = 0, use 30: continuation = yes to avoid constraining the input coordinates. 30: -30: Setting the LD random seed to -2797729 +30: Setting the LD random seed to -1073755146 30: Generated 331705 of the 331705 non-bonded parameter combinations 30: Generating 1-4 interactions: fudge = 0.5 30: Generated 331705 of the 331705 1-4 parameter combinations @@ -11750,7 +11785,7 @@ 30: Will try to add 4 NA ions and 4 CL ions. 30: Select a continuous group of solvent molecules 30: Selected 1: 'Water' -30: [ OK ] GenionTest.HighConcentrationIonPlacement (770 ms) +30: [ OK ] GenionTest.HighConcentrationIonPlacement (607 ms) 30: [ RUN ] GenionTest.NoIonPlacement 30: 30: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GenionTest_NoIonPlacement_input.mdp]: @@ -11763,7 +11798,7 @@ 30: For a correct single-point energy evaluation with nsteps = 0, use 30: continuation = yes to avoid constraining the input coordinates. 30: -30: Setting the LD random seed to -1096055417 +30: Setting the LD random seed to -1886729 30: Generated 331705 of the 331705 non-bonded parameter combinations 30: Generating 1-4 interactions: fudge = 0.5 30: Generated 331705 of the 331705 1-4 parameter combinations @@ -11786,8 +11821,8 @@ 30: There are: 1 Other residues 30: Analysing residues not classified as Protein/DNA/RNA/Water and splitting into groups... 30: This run will generate roughly 0 Mb of data -30: [ OK ] GenionTest.NoIonPlacement (472 ms) -30: [----------] 2 tests from GenionTest (1242 ms total) +30: [ OK ] GenionTest.NoIonPlacement (553 ms) +30: [----------] 2 tests from GenionTest (1160 ms total) 30: 30: [----------] 1 test from GenRestrTest 30: [ RUN ] GenRestrTest.SimpleRestraintsGenerated @@ -11805,8 +11840,8 @@ 30: Group 9 ( SideChain-H) has 35 elements 30: Select a group: Select group to position restrain 30: Selected 3: 'C-alpha' -30: [ OK ] GenRestrTest.SimpleRestraintsGenerated (3 ms) -30: [----------] 1 test from GenRestrTest (3 ms total) +30: [ OK ] GenRestrTest.SimpleRestraintsGenerated (2 ms) +30: [----------] 1 test from GenRestrTest (2 ms total) 30: 30: [----------] 9 tests from PreprocessingAtomTypesTest 30: [ RUN ] PreprocessingAtomTypesTest.EmptyOnCreate @@ -11816,7 +11851,7 @@ 30: [ RUN ] PreprocessingAtomTypesTest.AddTypeWorks 30: [ OK ] PreprocessingAtomTypesTest.AddTypeWorks (0 ms) 30: [ RUN ] PreprocessingAtomTypesTest.AddMultipleTypesWorks -30: [ OK ] PreprocessingAtomTypesTest.AddMultipleTypesWorks (0 ms) +30: [ OK ] PreprocessingAtomTypesTest.AddMultipleTypesWorks (1 ms) 30: [ RUN ] PreprocessingAtomTypesTest.CannotAddDuplicateEntry 30: [ OK ] PreprocessingAtomTypesTest.CannotAddDuplicateEntry (0 ms) 30: [ RUN ] PreprocessingAtomTypesTest.CorrectNameFound @@ -11827,7 +11862,7 @@ 30: [ OK ] PreprocessingAtomTypesTest.CorrectNameFromTypeNumber (0 ms) 30: [ RUN ] PreprocessingAtomTypesTest.NoNameFromIncorrectTypeNumber 30: [ OK ] PreprocessingAtomTypesTest.NoNameFromIncorrectTypeNumber (0 ms) -30: [----------] 9 tests from PreprocessingAtomTypesTest (0 ms total) +30: [----------] 9 tests from PreprocessingAtomTypesTest (1 ms total) 30: 30: [----------] 10 tests from PreprocessingBondAtomTypeTest 30: [ RUN ] PreprocessingBondAtomTypeTest.EmptyOnCreate @@ -11943,7 +11978,7 @@ 30: Writing generated configuration to /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesIntoEnlargedBox_out.gro 30: 30: Output configuration contains 10 atoms in 4 residues -30: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoEnlargedBox (1 ms) +30: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoEnlargedBox (2 ms) 30: [ RUN ] InsertMoleculesTest.InsertsMoleculesWithReplacement 30: Reading solute configuration 30: Initialising inter-atomic distances... @@ -12009,8 +12044,8 @@ 30: Writing generated configuration to /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesIntoFixedPositions_out.gro 30: 30: Output configuration contains 6 atoms in 3 residues -30: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoFixedPositions (1 ms) -30: [----------] 5 tests from InsertMoleculesTest (14 ms total) +30: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoFixedPositions (2 ms) +30: [----------] 5 tests from InsertMoleculesTest (16 ms total) 30: 30: [----------] 14 tests from GetIrTest 30: [ RUN ] GetIrTest.HandlesDifferentKindsOfMdpLines @@ -12023,7 +12058,7 @@ 30: 30: [ OK ] GetIrTest.HandlesDifferentKindsOfMdpLines (3 ms) 30: [ RUN ] GetIrTest.RejectsNonCommentLineWithNoEquals -30: [ OK ] GetIrTest.RejectsNonCommentLineWithNoEquals (26 ms) +30: [ OK ] GetIrTest.RejectsNonCommentLineWithNoEquals (9 ms) 30: [ RUN ] GetIrTest.AcceptsKeyWithoutValue 30: 30: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_AcceptsKeyWithoutValue_input.mdp]: @@ -12032,9 +12067,9 @@ 30: 30: [ OK ] GetIrTest.AcceptsKeyWithoutValue (3 ms) 30: [ RUN ] GetIrTest.RejectsValueWithoutKey -30: [ OK ] GetIrTest.RejectsValueWithoutKey (25 ms) +30: [ OK ] GetIrTest.RejectsValueWithoutKey (10 ms) 30: [ RUN ] GetIrTest.RejectsEmptyKeyAndEmptyValue -30: [ OK ] GetIrTest.RejectsEmptyKeyAndEmptyValue (31 ms) +30: [ OK ] GetIrTest.RejectsEmptyKeyAndEmptyValue (14 ms) 30: [ RUN ] GetIrTest.AcceptsDefineParametersWithValuesIncludingAssignment 30: 30: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_AcceptsDefineParametersWithValuesIncludingAssignment_input.mdp]: @@ -12048,14 +12083,14 @@ 30: For a correct single-point energy evaluation with nsteps = 0, use 30: continuation = yes to avoid constraining the input coordinates. 30: -30: [ OK ] GetIrTest.AcceptsEmptyLines (2 ms) +30: [ OK ] GetIrTest.AcceptsEmptyLines (3 ms) 30: [ RUN ] GetIrTest.AcceptsElectricField 30: 30: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_AcceptsElectricField_input.mdp]: 30: For a correct single-point energy evaluation with nsteps = 0, use 30: continuation = yes to avoid constraining the input coordinates. 30: -30: [ OK ] GetIrTest.AcceptsElectricField (11 ms) +30: [ OK ] GetIrTest.AcceptsElectricField (3 ms) 30: [ RUN ] GetIrTest.AcceptsElectricFieldPulsed 30: 30: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_AcceptsElectricFieldPulsed_input.mdp]: @@ -12069,9 +12104,9 @@ 30: For a correct single-point energy evaluation with nsteps = 0, use 30: continuation = yes to avoid constraining the input coordinates. 30: -30: [ OK ] GetIrTest.AcceptsElectricFieldOscillating (2 ms) +30: [ OK ] GetIrTest.AcceptsElectricFieldOscillating (3 ms) 30: [ RUN ] GetIrTest.RejectsDuplicateOldAndNewKeys -30: [ OK ] GetIrTest.RejectsDuplicateOldAndNewKeys (13 ms) +30: [ OK ] GetIrTest.RejectsDuplicateOldAndNewKeys (5 ms) 30: [ RUN ] GetIrTest.AcceptsImplicitSolventNo 30: 30: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_AcceptsImplicitSolventNo_input.mdp]: @@ -12080,15 +12115,15 @@ 30: 30: [ OK ] GetIrTest.AcceptsImplicitSolventNo (3 ms) 30: [ RUN ] GetIrTest.RejectsImplicitSolventYes -30: [ OK ] GetIrTest.RejectsImplicitSolventYes (7 ms) +30: [ OK ] GetIrTest.RejectsImplicitSolventYes (8 ms) 30: [ RUN ] GetIrTest.AcceptsMimic 30: 30: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_AcceptsMimic_input.mdp]: 30: For a correct single-point energy evaluation with nsteps = 0, use 30: continuation = yes to avoid constraining the input coordinates. 30: -30: [ OK ] GetIrTest.AcceptsMimic (2 ms) -30: [----------] 14 tests from GetIrTest (134 ms total) +30: [ OK ] GetIrTest.AcceptsMimic (4 ms) +30: [----------] 14 tests from GetIrTest (74 ms total) 30: 30: [----------] 5 tests from SolvateTest 30: [ RUN ] SolvateTest.cs_box_Works @@ -12128,7 +12163,7 @@ 30: Density : 1056.36 (g/l) 30: Number of solvent molecules: 47 30: -30: [ OK ] SolvateTest.cs_box_Works (12 ms) +30: [ OK ] SolvateTest.cs_box_Works (10 ms) 30: [ RUN ] SolvateTest.cs_cp_Works 30: Reading solute configuration 30: Reading solvent configuration @@ -12168,7 +12203,7 @@ 30: Density : 974.777 (g/l) 30: Number of solvent molecules: 886 30: -30: [ OK ] SolvateTest.cs_cp_Works (59 ms) +30: [ OK ] SolvateTest.cs_cp_Works (56 ms) 30: [ RUN ] SolvateTest.cs_cp_p_Works 30: Reading solute configuration 30: Reading solvent configuration @@ -12210,7 +12245,7 @@ 30: 30: Processing topology 30: Adding line for 886 solvent molecules with resname (SOL) to topology file (/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_cs_cp_p_Works_spc-and-methanol.top) -30: [ OK ] SolvateTest.cs_cp_p_Works (58 ms) +30: [ OK ] SolvateTest.cs_cp_p_Works (56 ms) 30: [ RUN ] SolvateTest.shell_Works 30: Reading solute configuration 30: Reading solvent configuration @@ -12296,7 +12331,7 @@ 30: Adding line for 1876 solvent molecules with resname (HOH) to topology file (/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_update_Topology_Works_simple.top) 30: Adding line for 2169 solvent molecules with resname (SOL) to topology file (/build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_update_Topology_Works_simple.top) 30: [ OK ] SolvateTest.update_Topology_Works (225 ms) -30: [----------] 5 tests from SolvateTest (380 ms total) +30: [----------] 5 tests from SolvateTest (373 ms total) 30: 30: [----------] 1 test from TopDirTests 30: [ RUN ] TopDirTests.NamesArrayHasCorrectSize @@ -12327,7 +12362,7 @@ 30: Read 252 atoms 30: Volume: 338.104 nm^3, corresponds to roughly 152100 electrons 30: No velocities found -30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFile/3 (3 ms) +30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFile/3 (4 ms) 30: [ RUN ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFile/4 30: Note that major changes are planned in future for editconf, to improve usability and utility. 30: Read 252 atoms @@ -12345,7 +12380,7 @@ 30: Read 252 atoms 30: Volume: 338.104 nm^3, corresponds to roughly 152100 electrons 30: No velocities found -30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFile/6 (5 ms) +30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFile/6 (4 ms) 30: [ RUN ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFile/7 30: Note that major changes are planned in future for editconf, to improve usability and utility. 30: Read 252 atoms @@ -12357,7 +12392,7 @@ 30: Read 252 atoms 30: Volume: 338.104 nm^3, corresponds to roughly 152100 electrons 30: No velocities found -30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFile/8 (2 ms) +30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFile/8 (4 ms) 30: [ RUN ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFileUsingIndexGroup/0 30: 30: Select a group for output: @@ -12367,7 +12402,7 @@ 30: Read 252 atoms 30: Volume: 338.104 nm^3, corresponds to roughly 152100 electrons 30: No velocities found -30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFileUsingIndexGroup/0 (7 ms) +30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFileUsingIndexGroup/0 (6 ms) 30: [ RUN ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFileUsingIndexGroup/1 30: 30: Select a group for output: @@ -12387,7 +12422,7 @@ 30: Read 252 atoms 30: Volume: 338.104 nm^3, corresponds to roughly 152100 electrons 30: No velocities found -30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFileUsingIndexGroup/2 (5 ms) +30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFileUsingIndexGroup/2 (6 ms) 30: [ RUN ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFileUsingIndexGroup/3 30: 30: Select a group for output: @@ -12427,7 +12462,7 @@ 30: Read 252 atoms 30: Volume: 338.104 nm^3, corresponds to roughly 152100 electrons 30: No velocities found -30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFileUsingIndexGroup/6 (4 ms) +30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFileUsingIndexGroup/6 (3 ms) 30: [ RUN ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFileUsingIndexGroup/7 30: 30: Select a group for output: @@ -12447,13 +12482,13 @@ 30: Read 252 atoms 30: Volume: 338.104 nm^3, corresponds to roughly 152100 electrons 30: No velocities found -30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFileUsingIndexGroup/8 (3 ms) -30: [----------] 18 tests from SinglePeptideFragments/EditconfTest (74 ms total) +30: [ OK ] SinglePeptideFragments/EditconfTest.ProducesMatchingOutputStructureFileUsingIndexGroup/8 (2 ms) +30: [----------] 18 tests from SinglePeptideFragments/EditconfTest (76 ms total) 30: 30: [----------] Global test environment tear-down -30: [==========] 69 tests from 10 test cases ran. (1850 ms total) +30: [==========] 69 tests from 10 test cases ran. (1706 ms total) 30: [ PASSED ] 69 tests. -30/54 Test #30: GmxPreprocessTests .................. Passed 1.87 sec +30/54 Test #30: GmxPreprocessTests .................. Passed 1.73 sec test 31 Start 31: Pdb2gmx1Test @@ -12520,7 +12555,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 31: The Oplsaa force field and the tip3p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/0 (105 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/0 (91 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/1 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -12580,7 +12615,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 31: The Oplsaa force field and the tip3p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/1 (115 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/1 (102 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/2 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -12638,7 +12673,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 31: The Oplsaa force field and the tip3p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/2 (105 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/2 (85 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/3 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -12696,7 +12731,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 31: The Oplsaa force field and the tip3p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/3 (94 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/3 (74 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/4 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -12758,7 +12793,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 31: The Oplsaa force field and the tip3p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/4 (113 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/4 (88 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/5 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -12821,7 +12856,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 31: The Oplsaa force field and the tip3p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/5 (126 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/5 (97 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/6 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -12882,7 +12917,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 31: The Oplsaa force field and the tip3p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/6 (120 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/6 (91 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/7 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -12943,7 +12978,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 31: The Oplsaa force field and the tip3p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/7 (106 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/7 (87 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/8 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -13002,7 +13037,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 31: The Oplsaa force field and the tip4p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/8 (138 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/8 (81 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/9 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -13062,7 +13097,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 31: The Oplsaa force field and the tip4p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/9 (128 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/9 (100 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/10 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -13120,7 +13155,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 31: The Oplsaa force field and the tip4p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/10 (105 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/10 (93 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/11 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -13178,7 +13213,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 31: The Oplsaa force field and the tip4p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/11 (94 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/11 (84 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/12 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -13240,7 +13275,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 31: The Oplsaa force field and the tip4p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/12 (111 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/12 (91 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/13 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -13303,7 +13338,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 31: The Oplsaa force field and the tip4p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/13 (123 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/13 (95 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/14 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -13364,7 +13399,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 31: The Oplsaa force field and the tip4p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/14 (114 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/14 (91 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/15 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -13425,7 +13460,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 31: The Oplsaa force field and the tip4p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/15 (102 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/15 (82 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/16 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -13484,7 +13519,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 31: The Oplsaa force field and the tip5p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/16 (103 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/16 (83 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/17 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -13544,7 +13579,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 31: The Oplsaa force field and the tip5p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/17 (119 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/17 (94 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/18 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -13602,7 +13637,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 31: The Oplsaa force field and the tip5p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/18 (106 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/18 (85 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/19 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -13660,7 +13695,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 31: The Oplsaa force field and the tip5p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/19 (97 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/19 (76 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/20 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -13722,7 +13757,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 31: The Oplsaa force field and the tip5p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/20 (111 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/20 (90 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/21 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -13785,7 +13820,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 31: The Oplsaa force field and the tip5p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/21 (123 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/21 (98 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/22 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -13846,7 +13881,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 31: The Oplsaa force field and the tip5p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/22 (116 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/22 (92 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/23 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -13907,13 +13942,13 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 31: The Oplsaa force field and the tip5p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/23 (103 ms) -31: [----------] 24 tests from ForOplsaa/Pdb2gmxTest (2677 ms total) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/23 (83 ms) +31: [----------] 24 tests from ForOplsaa/Pdb2gmxTest (2134 ms total) 31: 31: [----------] Global test environment tear-down -31: [==========] 24 tests from 1 test case ran. (2679 ms total) +31: [==========] 24 tests from 1 test case ran. (2134 ms total) 31: [ PASSED ] 24 tests. -31/54 Test #31: Pdb2gmx1Test ........................ Passed 2.70 sec +31/54 Test #31: Pdb2gmx1Test ........................ Passed 2.15 sec test 32 Start 32: Pdb2gmx2Test @@ -13995,7 +14030,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 32: The Gromos43a1 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/0 (72 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/0 (51 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/1 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -14070,7 +14105,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 32: The Gromos43a1 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/1 (77 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/1 (57 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/2 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -14143,7 +14178,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 32: The Gromos43a1 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/2 (67 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/2 (49 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/3 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -14216,7 +14251,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 32: The Gromos43a1 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/3 (58 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/3 (45 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/4 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -14293,7 +14328,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 32: The Gromos43a1 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/4 (64 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/4 (50 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/5 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -14371,7 +14406,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 32: The Gromos43a1 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/5 (78 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/5 (60 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/6 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -14447,7 +14482,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 32: The Gromos43a1 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/6 (63 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/6 (50 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/7 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -14523,7 +14558,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 32: The Gromos43a1 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/7 (59 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/7 (47 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/8 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -14597,7 +14632,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 32: The Gromos43a1 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/8 (60 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/8 (48 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/9 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -14672,7 +14707,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 32: The Gromos43a1 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/9 (74 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/9 (58 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/10 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -14745,7 +14780,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 32: The Gromos43a1 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/10 (66 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/10 (49 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/11 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -14818,7 +14853,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 32: The Gromos43a1 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/11 (65 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/11 (45 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/12 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -14895,7 +14930,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 32: The Gromos43a1 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/12 (76 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/12 (51 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/13 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -14973,7 +15008,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 32: The Gromos43a1 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/13 (136 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/13 (63 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/14 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -15049,7 +15084,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 32: The Gromos43a1 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/14 (118 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/14 (58 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/15 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -15125,8 +15160,8 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 32: The Gromos43a1 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/15 (96 ms) -32: [----------] 16 tests from ForGromos43a1/Pdb2gmxTest (1230 ms total) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/15 (55 ms) +32: [----------] 16 tests from ForGromos43a1/Pdb2gmxTest (836 ms total) 32: 32: [----------] 16 tests from ForGromos53a6/Pdb2gmxTest 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/0 @@ -15206,7 +15241,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 32: The Gromos53a6 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/0 (72 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/0 (61 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/1 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -15285,7 +15320,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 32: The Gromos53a6 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/1 (84 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/1 (73 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/2 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -15362,7 +15397,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 32: The Gromos53a6 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/2 (74 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/2 (66 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/3 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -15439,7 +15474,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 32: The Gromos53a6 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/3 (68 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/3 (59 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/4 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -15520,7 +15555,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 32: The Gromos53a6 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/4 (74 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/4 (62 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/5 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -15602,7 +15637,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 32: The Gromos53a6 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/5 (88 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/5 (79 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/6 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -15682,7 +15717,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 32: The Gromos53a6 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/6 (71 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/6 (65 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/7 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -15762,7 +15797,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 32: The Gromos53a6 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/7 (63 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/7 (60 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/8 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -15840,7 +15875,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 32: The Gromos53a6 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/8 (65 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/8 (62 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/9 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -15919,7 +15954,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 32: The Gromos53a6 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/9 (77 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/9 (69 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/10 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -15996,7 +16031,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 32: The Gromos53a6 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/10 (66 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/10 (65 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/11 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -16073,7 +16108,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 32: The Gromos53a6 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/11 (65 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/11 (59 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/12 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -16154,7 +16189,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 32: The Gromos53a6 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/12 (70 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/12 (64 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/13 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -16236,7 +16271,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 32: The Gromos53a6 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/13 (80 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/13 (73 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/14 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -16316,7 +16351,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 32: The Gromos53a6 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/14 (70 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/14 (63 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/15 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -16396,13 +16431,13 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 32: The Gromos53a6 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/15 (65 ms) -32: [----------] 16 tests from ForGromos53a6/Pdb2gmxTest (1154 ms total) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/15 (59 ms) +32: [----------] 16 tests from ForGromos53a6/Pdb2gmxTest (1040 ms total) 32: 32: [----------] Global test environment tear-down -32: [==========] 32 tests from 2 test cases ran. (2385 ms total) +32: [==========] 32 tests from 2 test cases ran. (1876 ms total) 32: [ PASSED ] 32 tests. -32/54 Test #32: Pdb2gmx2Test ........................ Passed 2.40 sec +32/54 Test #32: Pdb2gmx2Test ........................ Passed 1.89 sec test 33 Start 33: Pdb2gmx3Test @@ -16478,7 +16513,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 33: The Amber99sb-ildn force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/0 (125 ms) +33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/0 (72 ms) 33: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/1 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/dna.r2b @@ -16547,7 +16582,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 33: The Amber99sb-ildn force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/1 (103 ms) +33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/1 (81 ms) 33: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/2 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/dna.r2b @@ -16614,7 +16649,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 33: The Amber99sb-ildn force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/2 (90 ms) +33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/2 (72 ms) 33: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/3 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/dna.r2b @@ -16681,7 +16716,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 33: The Amber99sb-ildn force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/3 (80 ms) +33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/3 (66 ms) 33: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/4 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/dna.r2b @@ -16752,7 +16787,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 33: The Amber99sb-ildn force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/4 (97 ms) +33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/4 (77 ms) 33: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/5 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/dna.r2b @@ -16824,7 +16859,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 33: The Amber99sb-ildn force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/5 (109 ms) +33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/5 (88 ms) 33: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/6 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/dna.r2b @@ -16894,7 +16929,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 33: The Amber99sb-ildn force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/6 (101 ms) +33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/6 (80 ms) 33: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/7 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/dna.r2b @@ -16964,8 +16999,8 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 33: The Amber99sb-ildn force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/7 (87 ms) -33: [----------] 8 tests from ForAmber99sb_ildn/Pdb2gmxTest (793 ms total) +33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/7 (71 ms) +33: [----------] 8 tests from ForAmber99sb_ildn/Pdb2gmxTest (607 ms total) 33: 33: [----------] 8 tests from ForCharmm27/Pdb2gmxTest 33: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/0 @@ -17042,7 +17077,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/0 (93 ms) +33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/0 (73 ms) 33: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/1 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -17118,7 +17153,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/1 (105 ms) +33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/1 (82 ms) 33: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/2 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -17192,7 +17227,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/2 (94 ms) +33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/2 (84 ms) 33: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/3 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -17266,7 +17301,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/3 (83 ms) +33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/3 (70 ms) 33: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/4 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -17344,7 +17379,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/4 (100 ms) +33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/4 (81 ms) 33: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/5 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -17423,7 +17458,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/5 (111 ms) +33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/5 (88 ms) 33: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/6 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -17500,7 +17535,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/6 (104 ms) +33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/6 (82 ms) 33: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/7 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -17577,8 +17612,8 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/7 (90 ms) -33: [----------] 8 tests from ForCharmm27/Pdb2gmxTest (782 ms total) +33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/7 (71 ms) +33: [----------] 8 tests from ForCharmm27/Pdb2gmxTest (632 ms total) 33: 33: [----------] 8 tests from ChainSep/Pdb2gmxTest 33: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/0 @@ -17666,7 +17701,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/0 (93 ms) +33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/0 (74 ms) 33: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/1 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -17801,7 +17836,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/1 (61 ms) +33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/1 (49 ms) 33: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/2 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -17887,7 +17922,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/2 (93 ms) +33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/2 (75 ms) 33: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/3 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -18022,7 +18057,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/3 (61 ms) +33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/3 (49 ms) 33: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/4 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -18112,7 +18147,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/4 (94 ms) +33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/4 (75 ms) 33: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/5 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -18273,7 +18308,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/5 (59 ms) +33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/5 (46 ms) 33: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/6 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -18355,7 +18390,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/6 (92 ms) +33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/6 (74 ms) 33: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/7 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -18463,8 +18498,8 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/7 (69 ms) -33: [----------] 8 tests from ChainSep/Pdb2gmxTest (622 ms total) +33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/7 (55 ms) +33: [----------] 8 tests from ChainSep/Pdb2gmxTest (498 ms total) 33: 33: [----------] 4 tests from ChainChanges/Pdb2gmxTest 33: [ RUN ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/0 @@ -18565,7 +18600,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/two-fragments.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/0 (42 ms) +33: [ OK ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/0 (34 ms) 33: [ RUN ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/1 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -18664,7 +18699,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/two-fragments.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/1 (43 ms) +33: [ OK ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/1 (36 ms) 33: [ RUN ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/2 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -18763,7 +18798,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/two-fragments.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/2 (43 ms) +33: [ OK ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/2 (34 ms) 33: [ RUN ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/3 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -18862,13 +18897,13 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/two-fragments.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/3 (43 ms) -33: [----------] 4 tests from ChainChanges/Pdb2gmxTest (171 ms total) +33: [ OK ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/3 (35 ms) +33: [----------] 4 tests from ChainChanges/Pdb2gmxTest (139 ms total) 33: 33: [----------] Global test environment tear-down -33: [==========] 28 tests from 4 test cases ran. (2368 ms total) +33: [==========] 28 tests from 4 test cases ran. (1876 ms total) 33: [ PASSED ] 28 tests. -33/54 Test #33: Pdb2gmx3Test ........................ Passed 2.41 sec +33/54 Test #33: Pdb2gmx3Test ........................ Passed 1.89 sec test 34 Start 34: CorrelationsTest @@ -18878,26 +18913,26 @@ 34: [----------] Global test environment set-up. 34: [----------] 10 tests from AutocorrTest 34: [ RUN ] AutocorrTest.EacNormal -34: [ OK ] AutocorrTest.EacNormal (143 ms) +34: [ OK ] AutocorrTest.EacNormal (82 ms) 34: [ RUN ] AutocorrTest.EacNoNormalize -34: [ OK ] AutocorrTest.EacNoNormalize (57 ms) +34: [ OK ] AutocorrTest.EacNoNormalize (53 ms) 34: [ RUN ] AutocorrTest.EacCos -34: [ OK ] AutocorrTest.EacCos (139 ms) +34: [ OK ] AutocorrTest.EacCos (67 ms) 34: [ RUN ] AutocorrTest.EacVector -34: [ OK ] AutocorrTest.EacVector (208 ms) +34: [ OK ] AutocorrTest.EacVector (124 ms) 34: [ RUN ] AutocorrTest.EacRcross -34: [ OK ] AutocorrTest.EacRcross (1 ms) +34: [ OK ] AutocorrTest.EacRcross (2 ms) 34: [ RUN ] AutocorrTest.EacP0 -34: [ OK ] AutocorrTest.EacP0 (204 ms) +34: [ OK ] AutocorrTest.EacP0 (119 ms) 34: [ RUN ] AutocorrTest.EacP1 -34: [ OK ] AutocorrTest.EacP1 (207 ms) +34: [ OK ] AutocorrTest.EacP1 (124 ms) 34: [ RUN ] AutocorrTest.EacP2 -34: [ OK ] AutocorrTest.EacP2 (418 ms) +34: [ OK ] AutocorrTest.EacP2 (250 ms) 34: [ RUN ] AutocorrTest.EacP3 -34: [ OK ] AutocorrTest.EacP3 (12 ms) +34: [ OK ] AutocorrTest.EacP3 (4 ms) 34: [ RUN ] AutocorrTest.EacP4 -34: [ OK ] AutocorrTest.EacP4 (207 ms) -34: [----------] 10 tests from AutocorrTest (1596 ms total) +34: [ OK ] AutocorrTest.EacP4 (132 ms) +34: [----------] 10 tests from AutocorrTest (958 ms total) 34: 34: [----------] 1 test from ManyAutocorrelationTest 34: [ RUN ] ManyAutocorrelationTest.Empty @@ -18906,15 +18941,15 @@ 34: 34: [----------] 10 tests from ExpfitTest 34: [ RUN ] ExpfitTest.EffnEXP1 -34: [ OK ] ExpfitTest.EffnEXP1 (0 ms) +34: [ OK ] ExpfitTest.EffnEXP1 (1 ms) 34: [ RUN ] ExpfitTest.EffnEXP2 34: [ OK ] ExpfitTest.EffnEXP2 (0 ms) 34: [ RUN ] ExpfitTest.EffnEXPEXP -34: [ OK ] ExpfitTest.EffnEXPEXP (10 ms) +34: [ OK ] ExpfitTest.EffnEXPEXP (2 ms) 34: [ RUN ] ExpfitTest.EffnEXP5 34: [ OK ] ExpfitTest.EffnEXP5 (13 ms) 34: [ RUN ] ExpfitTest.EffnEXP7 -34: [ OK ] ExpfitTest.EffnEXP7 (11 ms) +34: [ OK ] ExpfitTest.EffnEXP7 (8 ms) 34: [ RUN ] ExpfitTest.EffnEXP9 34: [ OK ] ExpfitTest.EffnEXP9 (30 ms) 34: [ RUN ] ExpfitTest.EffnERF @@ -18922,15 +18957,15 @@ 34: [ RUN ] ExpfitTest.EffnERREST 34: [ OK ] ExpfitTest.EffnERREST (1 ms) 34: [ RUN ] ExpfitTest.EffnVAC -34: [ OK ] ExpfitTest.EffnVAC (7 ms) +34: [ OK ] ExpfitTest.EffnVAC (5 ms) 34: [ RUN ] ExpfitTest.EffnPRES -34: [ OK ] ExpfitTest.EffnPRES (20 ms) -34: [----------] 10 tests from ExpfitTest (95 ms total) +34: [ OK ] ExpfitTest.EffnPRES (17 ms) +34: [----------] 10 tests from ExpfitTest (79 ms total) 34: 34: [----------] Global test environment tear-down -34: [==========] 21 tests from 3 test cases ran. (1705 ms total) +34: [==========] 21 tests from 3 test cases ran. (1046 ms total) 34: [ PASSED ] 21 tests. -34/54 Test #34: CorrelationsTest .................... Passed 1.73 sec +34/54 Test #34: CorrelationsTest .................... Passed 1.06 sec test 35 Start 35: AnalysisDataUnitTests @@ -18942,18 +18977,18 @@ 35: [ RUN ] AnalysisDataInitializationTest.BasicInitialization 35: [ OK ] AnalysisDataInitializationTest.BasicInitialization (0 ms) 35: [ RUN ] AnalysisDataInitializationTest.ChecksMultiColumnModules -35: [ OK ] AnalysisDataInitializationTest.ChecksMultiColumnModules (1 ms) +35: [ OK ] AnalysisDataInitializationTest.ChecksMultiColumnModules (0 ms) 35: [ RUN ] AnalysisDataInitializationTest.ChecksMultipointModules 35: [ OK ] AnalysisDataInitializationTest.ChecksMultipointModules (0 ms) -35: [----------] 3 tests from AnalysisDataInitializationTest (1 ms total) +35: [----------] 3 tests from AnalysisDataInitializationTest (0 ms total) 35: 35: [----------] 8 tests from AnalysisDataCommonTest/0, where TypeParam = (anonymous namespace)::SimpleInputData 35: [ RUN ] AnalysisDataCommonTest/0.CallsModuleCorrectly -35: [ OK ] AnalysisDataCommonTest/0.CallsModuleCorrectly (0 ms) +35: [ OK ] AnalysisDataCommonTest/0.CallsModuleCorrectly (1 ms) 35: [ RUN ] AnalysisDataCommonTest/0.CallsParallelModuleCorrectly -35: [ OK ] AnalysisDataCommonTest/0.CallsParallelModuleCorrectly (1 ms) +35: [ OK ] AnalysisDataCommonTest/0.CallsParallelModuleCorrectly (0 ms) 35: [ RUN ] AnalysisDataCommonTest/0.CallsMixedModulesCorrectly -35: [ OK ] AnalysisDataCommonTest/0.CallsMixedModulesCorrectly (0 ms) +35: [ OK ] AnalysisDataCommonTest/0.CallsMixedModulesCorrectly (1 ms) 35: [ RUN ] AnalysisDataCommonTest/0.CallsColumnModuleCorrectly 35: [ OK ] AnalysisDataCommonTest/0.CallsColumnModuleCorrectly (0 ms) 35: [ RUN ] AnalysisDataCommonTest/0.CallsModuleCorrectlyWithOutOfOrderFrames @@ -18961,14 +18996,14 @@ 35: [ RUN ] AnalysisDataCommonTest/0.FullStorageWorks 35: [ OK ] AnalysisDataCommonTest/0.FullStorageWorks (0 ms) 35: [ RUN ] AnalysisDataCommonTest/0.CanAddModuleAfterStoredData -35: [ OK ] AnalysisDataCommonTest/0.CanAddModuleAfterStoredData (0 ms) +35: [ OK ] AnalysisDataCommonTest/0.CanAddModuleAfterStoredData (1 ms) 35: [ RUN ] AnalysisDataCommonTest/0.LimitedStorageWorks -35: [ OK ] AnalysisDataCommonTest/0.LimitedStorageWorks (1 ms) -35: [----------] 8 tests from AnalysisDataCommonTest/0 (3 ms total) +35: [ OK ] AnalysisDataCommonTest/0.LimitedStorageWorks (0 ms) +35: [----------] 8 tests from AnalysisDataCommonTest/0 (4 ms total) 35: 35: [----------] 8 tests from AnalysisDataCommonTest/1, where TypeParam = (anonymous namespace)::DataSetsInputData 35: [ RUN ] AnalysisDataCommonTest/1.CallsModuleCorrectly -35: [ OK ] AnalysisDataCommonTest/1.CallsModuleCorrectly (4 ms) +35: [ OK ] AnalysisDataCommonTest/1.CallsModuleCorrectly (0 ms) 35: [ RUN ] AnalysisDataCommonTest/1.CallsParallelModuleCorrectly 35: [ OK ] AnalysisDataCommonTest/1.CallsParallelModuleCorrectly (1 ms) 35: [ RUN ] AnalysisDataCommonTest/1.CallsMixedModulesCorrectly @@ -18978,22 +19013,22 @@ 35: [ RUN ] AnalysisDataCommonTest/1.CallsModuleCorrectlyWithOutOfOrderFrames 35: [ OK ] AnalysisDataCommonTest/1.CallsModuleCorrectlyWithOutOfOrderFrames (0 ms) 35: [ RUN ] AnalysisDataCommonTest/1.FullStorageWorks -35: [ OK ] AnalysisDataCommonTest/1.FullStorageWorks (1 ms) +35: [ OK ] AnalysisDataCommonTest/1.FullStorageWorks (0 ms) 35: [ RUN ] AnalysisDataCommonTest/1.CanAddModuleAfterStoredData -35: [ OK ] AnalysisDataCommonTest/1.CanAddModuleAfterStoredData (0 ms) +35: [ OK ] AnalysisDataCommonTest/1.CanAddModuleAfterStoredData (1 ms) 35: [ RUN ] AnalysisDataCommonTest/1.LimitedStorageWorks 35: [ OK ] AnalysisDataCommonTest/1.LimitedStorageWorks (0 ms) -35: [----------] 8 tests from AnalysisDataCommonTest/1 (7 ms total) +35: [----------] 8 tests from AnalysisDataCommonTest/1 (3 ms total) 35: 35: [----------] 8 tests from AnalysisDataCommonTest/2, where TypeParam = (anonymous namespace)::MultipointInputData 35: [ RUN ] AnalysisDataCommonTest/2.CallsModuleCorrectly -35: [ OK ] AnalysisDataCommonTest/2.CallsModuleCorrectly (1 ms) +35: [ OK ] AnalysisDataCommonTest/2.CallsModuleCorrectly (0 ms) 35: [ RUN ] AnalysisDataCommonTest/2.CallsParallelModuleCorrectly -35: [ OK ] AnalysisDataCommonTest/2.CallsParallelModuleCorrectly (5 ms) +35: [ OK ] AnalysisDataCommonTest/2.CallsParallelModuleCorrectly (1 ms) 35: [ RUN ] AnalysisDataCommonTest/2.CallsMixedModulesCorrectly -35: [ OK ] AnalysisDataCommonTest/2.CallsMixedModulesCorrectly (0 ms) +35: [ OK ] AnalysisDataCommonTest/2.CallsMixedModulesCorrectly (1 ms) 35: [ RUN ] AnalysisDataCommonTest/2.CallsColumnModuleCorrectly -35: [ OK ] AnalysisDataCommonTest/2.CallsColumnModuleCorrectly (1 ms) +35: [ OK ] AnalysisDataCommonTest/2.CallsColumnModuleCorrectly (0 ms) 35: [ RUN ] AnalysisDataCommonTest/2.CallsModuleCorrectlyWithOutOfOrderFrames 35: [ OK ] AnalysisDataCommonTest/2.CallsModuleCorrectlyWithOutOfOrderFrames (1 ms) 35: [ RUN ] AnalysisDataCommonTest/2.FullStorageWorks @@ -19002,7 +19037,7 @@ 35: [ OK ] AnalysisDataCommonTest/2.CanAddModuleAfterStoredData (0 ms) 35: [ RUN ] AnalysisDataCommonTest/2.LimitedStorageWorks 35: [ OK ] AnalysisDataCommonTest/2.LimitedStorageWorks (1 ms) -35: [----------] 8 tests from AnalysisDataCommonTest/2 (9 ms total) +35: [----------] 8 tests from AnalysisDataCommonTest/2 (4 ms total) 35: 35: [----------] 8 tests from AnalysisDataCommonTest/3, where TypeParam = (anonymous namespace)::MultipointDataSetsInputData 35: [ RUN ] AnalysisDataCommonTest/3.CallsModuleCorrectly @@ -19020,25 +19055,25 @@ 35: [ RUN ] AnalysisDataCommonTest/3.CanAddModuleAfterStoredData 35: [ OK ] AnalysisDataCommonTest/3.CanAddModuleAfterStoredData (0 ms) 35: [ RUN ] AnalysisDataCommonTest/3.LimitedStorageWorks -35: [ OK ] AnalysisDataCommonTest/3.LimitedStorageWorks (1 ms) -35: [----------] 8 tests from AnalysisDataCommonTest/3 (4 ms total) +35: [ OK ] AnalysisDataCommonTest/3.LimitedStorageWorks (0 ms) +35: [----------] 8 tests from AnalysisDataCommonTest/3 (3 ms total) 35: 35: [----------] 4 tests from AnalysisArrayDataTest 35: [ RUN ] AnalysisArrayDataTest.CallsModuleCorrectly 35: [ OK ] AnalysisArrayDataTest.CallsModuleCorrectly (0 ms) 35: [ RUN ] AnalysisArrayDataTest.StorageWorks -35: [ OK ] AnalysisArrayDataTest.StorageWorks (1 ms) +35: [ OK ] AnalysisArrayDataTest.StorageWorks (0 ms) 35: [ RUN ] AnalysisArrayDataTest.CanSetXAxis 35: [ OK ] AnalysisArrayDataTest.CanSetXAxis (0 ms) 35: [ RUN ] AnalysisArrayDataTest.CanSetXAxisBeforeRowCount 35: [ OK ] AnalysisArrayDataTest.CanSetXAxisBeforeRowCount (0 ms) -35: [----------] 4 tests from AnalysisArrayDataTest (9 ms total) +35: [----------] 4 tests from AnalysisArrayDataTest (0 ms total) 35: 35: [----------] 6 tests from AverageModuleTest 35: [ RUN ] AverageModuleTest.BasicTest -35: [ OK ] AverageModuleTest.BasicTest (0 ms) +35: [ OK ] AverageModuleTest.BasicTest (1 ms) 35: [ RUN ] AverageModuleTest.HandlesMultipointData -35: [ OK ] AverageModuleTest.HandlesMultipointData (1 ms) +35: [ OK ] AverageModuleTest.HandlesMultipointData (0 ms) 35: [ RUN ] AverageModuleTest.HandlesMultipleDataSets 35: [ OK ] AverageModuleTest.HandlesMultipleDataSets (1 ms) 35: [ RUN ] AverageModuleTest.HandlesDataSetAveraging @@ -19046,14 +19081,14 @@ 35: [ RUN ] AverageModuleTest.CanCustomizeXAxis 35: [ OK ] AverageModuleTest.CanCustomizeXAxis (0 ms) 35: [ RUN ] AverageModuleTest.CanCustomizeNonUniformXAxis -35: [ OK ] AverageModuleTest.CanCustomizeNonUniformXAxis (1 ms) +35: [ OK ] AverageModuleTest.CanCustomizeNonUniformXAxis (0 ms) 35: [----------] 6 tests from AverageModuleTest (4 ms total) 35: 35: [----------] 2 tests from FrameAverageModuleTest 35: [ RUN ] FrameAverageModuleTest.BasicTest 35: [ OK ] FrameAverageModuleTest.BasicTest (1 ms) 35: [ RUN ] FrameAverageModuleTest.HandlesMultipleDataSets -35: [ OK ] FrameAverageModuleTest.HandlesMultipleDataSets (0 ms) +35: [ OK ] FrameAverageModuleTest.HandlesMultipleDataSets (1 ms) 35: [----------] 2 tests from FrameAverageModuleTest (2 ms total) 35: 35: [----------] 7 tests from AnalysisHistogramSettingsTest @@ -19077,8 +19112,8 @@ 35: [ RUN ] SimpleHistogramModuleTest.ComputesCorrectly 35: [ OK ] SimpleHistogramModuleTest.ComputesCorrectly (1 ms) 35: [ RUN ] SimpleHistogramModuleTest.ComputesCorrectlyWithAll -35: [ OK ] SimpleHistogramModuleTest.ComputesCorrectlyWithAll (5 ms) -35: [----------] 2 tests from SimpleHistogramModuleTest (6 ms total) +35: [ OK ] SimpleHistogramModuleTest.ComputesCorrectlyWithAll (1 ms) +35: [----------] 2 tests from SimpleHistogramModuleTest (2 ms total) 35: 35: [----------] 3 tests from WeightedHistogramModuleTest 35: [ RUN ] WeightedHistogramModuleTest.ComputesCorrectly @@ -19091,23 +19126,23 @@ 35: 35: [----------] 3 tests from BinAverageModuleTest 35: [ RUN ] BinAverageModuleTest.ComputesCorrectly -35: [ OK ] BinAverageModuleTest.ComputesCorrectly (0 ms) +35: [ OK ] BinAverageModuleTest.ComputesCorrectly (1 ms) 35: [ RUN ] BinAverageModuleTest.ComputesCorrectlyWithAll 35: [ OK ] BinAverageModuleTest.ComputesCorrectlyWithAll (1 ms) 35: [ RUN ] BinAverageModuleTest.HandlesMultipleDataSets -35: [ OK ] BinAverageModuleTest.HandlesMultipleDataSets (1 ms) -35: [----------] 3 tests from BinAverageModuleTest (3 ms total) +35: [ OK ] BinAverageModuleTest.HandlesMultipleDataSets (0 ms) +35: [----------] 3 tests from BinAverageModuleTest (2 ms total) 35: 35: [----------] 4 tests from AbstractAverageHistogramTest 35: [ RUN ] AbstractAverageHistogramTest.ClonesCorrectly 35: [ OK ] AbstractAverageHistogramTest.ClonesCorrectly (1 ms) 35: [ RUN ] AbstractAverageHistogramTest.ComputesCumulativeHistogram -35: [ OK ] AbstractAverageHistogramTest.ComputesCumulativeHistogram (9 ms) +35: [ OK ] AbstractAverageHistogramTest.ComputesCumulativeHistogram (1 ms) 35: [ RUN ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidth -35: [ OK ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidth (1 ms) +35: [ OK ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidth (0 ms) 35: [ RUN ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidthWithIntegerBins 35: [ OK ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidthWithIntegerBins (1 ms) -35: [----------] 4 tests from AbstractAverageHistogramTest (12 ms total) +35: [----------] 4 tests from AbstractAverageHistogramTest (4 ms total) 35: 35: [----------] 3 tests from LifetimeModuleTest 35: [ RUN ] LifetimeModuleTest.BasicTest @@ -19115,13 +19150,13 @@ 35: [ RUN ] LifetimeModuleTest.CumulativeTest 35: [ OK ] LifetimeModuleTest.CumulativeTest (0 ms) 35: [ RUN ] LifetimeModuleTest.HandlesMultipleDataSets -35: [ OK ] LifetimeModuleTest.HandlesMultipleDataSets (0 ms) +35: [ OK ] LifetimeModuleTest.HandlesMultipleDataSets (1 ms) 35: [----------] 3 tests from LifetimeModuleTest (2 ms total) 35: 35: [----------] Global test environment tear-down -35: [==========] 69 tests from 14 test cases ran. (65 ms total) +35: [==========] 69 tests from 14 test cases ran. (34 ms total) 35: [ PASSED ] 69 tests. -35/54 Test #35: AnalysisDataUnitTests ............... Passed 0.10 sec +35/54 Test #35: AnalysisDataUnitTests ............... Passed 0.05 sec test 36 Start 36: CoordinateIOTests @@ -19139,8 +19174,8 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] OutputSelectorDeathTest.RejectsBadSelection (20 ms) -36: [----------] 1 test from OutputSelectorDeathTest (20 ms total) +36: [ OK ] OutputSelectorDeathTest.RejectsBadSelection (6 ms) +36: [----------] 1 test from OutputSelectorDeathTest (6 ms total) 36: 36: [----------] 5 tests from TrajectoryFrameWriterTest 36: [ RUN ] TrajectoryFrameWriterTest.RejectsWrongFiletype @@ -19152,7 +19187,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] TrajectoryFrameWriterTest.RejectsWrongFiletype (4 ms) +36: [ OK ] TrajectoryFrameWriterTest.RejectsWrongFiletype (3 ms) 36: [ RUN ] TrajectoryFrameWriterTest.BuilderFailsWithPdbAndNoAtoms 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19162,7 +19197,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] TrajectoryFrameWriterTest.BuilderFailsWithPdbAndNoAtoms (8 ms) +36: [ OK ] TrajectoryFrameWriterTest.BuilderFailsWithPdbAndNoAtoms (4 ms) 36: [ RUN ] TrajectoryFrameWriterTest.BuilderFailsWithGroAndNoAtoms 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19172,7 +19207,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] TrajectoryFrameWriterTest.BuilderFailsWithGroAndNoAtoms (9 ms) +36: [ OK ] TrajectoryFrameWriterTest.BuilderFailsWithGroAndNoAtoms (3 ms) 36: [ RUN ] TrajectoryFrameWriterTest.BuilderImplictlyAddsAtoms 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19190,10 +19225,10 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] TrajectoryFrameWriterTest.BuilderImplictlyAddsAtoms (16 ms) +36: [ OK ] TrajectoryFrameWriterTest.BuilderImplictlyAddsAtoms (6 ms) 36: [ RUN ] TrajectoryFrameWriterTest.TNGOutputWorks 36: [ OK ] TrajectoryFrameWriterTest.TNGOutputWorks (0 ms) -36: [----------] 5 tests from TrajectoryFrameWriterTest (37 ms total) +36: [----------] 5 tests from TrajectoryFrameWriterTest (16 ms total) 36: 36: [----------] 5 tests from OutputAdapterContainer 36: [ RUN ] OutputAdapterContainer.MakeEmpty @@ -19203,14 +19238,14 @@ 36: [ RUN ] OutputAdapterContainer.RejectBadAdapter 36: [ OK ] OutputAdapterContainer.RejectBadAdapter (0 ms) 36: [ RUN ] OutputAdapterContainer.RejectDuplicateAdapter -36: [ OK ] OutputAdapterContainer.RejectDuplicateAdapter (1 ms) +36: [ OK ] OutputAdapterContainer.RejectDuplicateAdapter (0 ms) 36: [ RUN ] OutputAdapterContainer.AcceptMultipleAdapters 36: [ OK ] OutputAdapterContainer.AcceptMultipleAdapters (0 ms) -36: [----------] 5 tests from OutputAdapterContainer (1 ms total) +36: [----------] 5 tests from OutputAdapterContainer (0 ms total) 36: 36: [----------] 5 tests from FlagTest 36: [ RUN ] FlagTest.CanSetSimpleFlag -36: [ OK ] FlagTest.CanSetSimpleFlag (0 ms) +36: [ OK ] FlagTest.CanSetSimpleFlag (1 ms) 36: [ RUN ] FlagTest.CanAddNewBox 36: [ OK ] FlagTest.CanAddNewBox (0 ms) 36: [ RUN ] FlagTest.SetsImplicitPrecisionChange @@ -19219,7 +19254,7 @@ 36: [ OK ] FlagTest.SetsImplicitStartTimeChange (0 ms) 36: [ RUN ] FlagTest.SetsImplicitTimeStepChange 36: [ OK ] FlagTest.SetsImplicitTimeStepChange (0 ms) -36: [----------] 5 tests from FlagTest (0 ms total) +36: [----------] 5 tests from FlagTest (1 ms total) 36: 36: [----------] 5 tests from SetAtomsTest 36: [ RUN ] SetAtomsTest.RemovesExistingAtoms @@ -19231,7 +19266,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] SetAtomsTest.RemovesExistingAtoms (4 ms) +36: [ OK ] SetAtomsTest.RemovesExistingAtoms (3 ms) 36: [ RUN ] SetAtomsTest.AddsNewAtoms 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19241,7 +19276,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] SetAtomsTest.AddsNewAtoms (8 ms) +36: [ OK ] SetAtomsTest.AddsNewAtoms (3 ms) 36: [ RUN ] SetAtomsTest.ThrowsOnRequiredAtomsNotAvailable 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19261,7 +19296,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] SetAtomsTest.WillUseOldAtomsWhenNoNewAvailable (13 ms) +36: [ OK ] SetAtomsTest.WillUseOldAtomsWhenNoNewAvailable (3 ms) 36: [ RUN ] SetAtomsTest.ThrowsWhenUserAtomReplacementNotPossible 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19272,7 +19307,7 @@ 36: files if necessary. 36: 36: [ OK ] SetAtomsTest.ThrowsWhenUserAtomReplacementNotPossible (4 ms) -36: [----------] 5 tests from SetAtomsTest (33 ms total) +36: [----------] 5 tests from SetAtomsTest (17 ms total) 36: 36: [----------] 2 tests from SetBothTimeTest 36: [ RUN ] SetBothTimeTest.StartTimeZeroWorks @@ -19303,7 +19338,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/0 (12 ms) +36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/0 (3 ms) 36: [ RUN ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/1 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19313,7 +19348,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/1 (5 ms) +36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/1 (4 ms) 36: [ RUN ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/2 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19323,7 +19358,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/2 (12 ms) +36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/2 (4 ms) 36: [ RUN ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/3 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19333,7 +19368,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/3 (4 ms) +36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/3 (3 ms) 36: [ RUN ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/4 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19343,7 +19378,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/4 (9 ms) +36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/4 (3 ms) 36: [ RUN ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/5 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19353,8 +19388,8 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/5 (8 ms) -36: [----------] 6 tests from CoordinateFileFileFormats/TrajectoryFrameWriterTest (50 ms total) +36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/5 (4 ms) +36: [----------] 6 tests from CoordinateFileFileFormats/TrajectoryFrameWriterTest (21 ms total) 36: 36: [----------] 3 tests from ModuleSupported/SetAtomsSupportedFiles 36: [ RUN ] ModuleSupported/SetAtomsSupportedFiles.Works/0 @@ -19366,7 +19401,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/SetAtomsSupportedFiles.Works/0 (4 ms) +36: [ OK ] ModuleSupported/SetAtomsSupportedFiles.Works/0 (3 ms) 36: [ RUN ] ModuleSupported/SetAtomsSupportedFiles.Works/1 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19376,7 +19411,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/SetAtomsSupportedFiles.Works/1 (12 ms) +36: [ OK ] ModuleSupported/SetAtomsSupportedFiles.Works/1 (4 ms) 36: [ RUN ] ModuleSupported/SetAtomsSupportedFiles.Works/2 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19386,17 +19421,17 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/SetAtomsSupportedFiles.Works/2 (5 ms) -36: [----------] 3 tests from ModuleSupported/SetAtomsSupportedFiles (21 ms total) +36: [ OK ] ModuleSupported/SetAtomsSupportedFiles.Works/2 (3 ms) +36: [----------] 3 tests from ModuleSupported/SetAtomsSupportedFiles (10 ms total) 36: 36: [----------] 3 tests from ModuleUnSupported/SetAtomsUnSupportedFiles 36: [ RUN ] ModuleUnSupported/SetAtomsUnSupportedFiles.Works/0 36: [ OK ] ModuleUnSupported/SetAtomsUnSupportedFiles.Works/0 (0 ms) 36: [ RUN ] ModuleUnSupported/SetAtomsUnSupportedFiles.Works/1 -36: [ OK ] ModuleUnSupported/SetAtomsUnSupportedFiles.Works/1 (0 ms) +36: [ OK ] ModuleUnSupported/SetAtomsUnSupportedFiles.Works/1 (1 ms) 36: [ RUN ] ModuleUnSupported/SetAtomsUnSupportedFiles.Works/2 36: [ OK ] ModuleUnSupported/SetAtomsUnSupportedFiles.Works/2 (0 ms) -36: [----------] 3 tests from ModuleUnSupported/SetAtomsUnSupportedFiles (0 ms total) +36: [----------] 3 tests from ModuleUnSupported/SetAtomsUnSupportedFiles (1 ms total) 36: 36: [----------] 4 tests from ModuleSupported/AnyOutputSupportedFiles 36: [ RUN ] ModuleSupported/AnyOutputSupportedFiles.Works/0 @@ -19416,7 +19451,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/AnyOutputSupportedFiles.Works/0 (12 ms) +36: [ OK ] ModuleSupported/AnyOutputSupportedFiles.Works/0 (7 ms) 36: [ RUN ] ModuleSupported/AnyOutputSupportedFiles.Works/1 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19434,7 +19469,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/AnyOutputSupportedFiles.Works/1 (17 ms) +36: [ OK ] ModuleSupported/AnyOutputSupportedFiles.Works/1 (7 ms) 36: [ RUN ] ModuleSupported/AnyOutputSupportedFiles.Works/2 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19452,7 +19487,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/AnyOutputSupportedFiles.Works/2 (17 ms) +36: [ OK ] ModuleSupported/AnyOutputSupportedFiles.Works/2 (6 ms) 36: [ RUN ] ModuleSupported/AnyOutputSupportedFiles.Works/3 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19470,8 +19505,8 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/AnyOutputSupportedFiles.Works/3 (17 ms) -36: [----------] 4 tests from ModuleSupported/AnyOutputSupportedFiles (63 ms total) +36: [ OK ] ModuleSupported/AnyOutputSupportedFiles.Works/3 (6 ms) +36: [----------] 4 tests from ModuleSupported/AnyOutputSupportedFiles (27 ms total) 36: 36: [----------] 3 tests from ModuleSupported/SetVelocitySupportedFiles 36: [ RUN ] ModuleSupported/SetVelocitySupportedFiles.Works/0 @@ -19483,7 +19518,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/SetVelocitySupportedFiles.Works/0 (8 ms) +36: [ OK ] ModuleSupported/SetVelocitySupportedFiles.Works/0 (4 ms) 36: [ RUN ] ModuleSupported/SetVelocitySupportedFiles.Works/1 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19493,7 +19528,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/SetVelocitySupportedFiles.Works/1 (8 ms) +36: [ OK ] ModuleSupported/SetVelocitySupportedFiles.Works/1 (3 ms) 36: [ RUN ] ModuleSupported/SetVelocitySupportedFiles.Works/2 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19504,7 +19539,7 @@ 36: files if necessary. 36: 36: [ OK ] ModuleSupported/SetVelocitySupportedFiles.Works/2 (4 ms) -36: [----------] 3 tests from ModuleSupported/SetVelocitySupportedFiles (20 ms total) +36: [----------] 3 tests from ModuleSupported/SetVelocitySupportedFiles (11 ms total) 36: 36: [----------] 3 tests from ModuleUnSupported/SetVelocityUnSupportedFiles 36: [ RUN ] ModuleUnSupported/SetVelocityUnSupportedFiles.Works/0 @@ -19525,7 +19560,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/SetForceSupportedFiles.Works/0 (13 ms) +36: [ OK ] ModuleSupported/SetForceSupportedFiles.Works/0 (3 ms) 36: [ RUN ] ModuleSupported/SetForceSupportedFiles.Works/1 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19536,7 +19571,7 @@ 36: files if necessary. 36: 36: [ OK ] ModuleSupported/SetForceSupportedFiles.Works/1 (4 ms) -36: [----------] 2 tests from ModuleSupported/SetForceSupportedFiles (17 ms total) +36: [----------] 2 tests from ModuleSupported/SetForceSupportedFiles (7 ms total) 36: 36: [----------] 4 tests from ModuleUnSupported/SetForceUnSupportedFiles 36: [ RUN ] ModuleUnSupported/SetForceUnSupportedFiles.Works/0 @@ -19559,7 +19594,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/SetPrecisionSupportedFiles.Works/0 (5 ms) +36: [ OK ] ModuleSupported/SetPrecisionSupportedFiles.Works/0 (4 ms) 36: [ RUN ] ModuleSupported/SetPrecisionSupportedFiles.Works/1 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19569,8 +19604,8 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/SetPrecisionSupportedFiles.Works/1 (5 ms) -36: [----------] 2 tests from ModuleSupported/SetPrecisionSupportedFiles (10 ms total) +36: [ OK ] ModuleSupported/SetPrecisionSupportedFiles.Works/1 (3 ms) +36: [----------] 2 tests from ModuleSupported/SetPrecisionSupportedFiles (7 ms total) 36: 36: [----------] 4 tests from ModuleUnSupported/SetPrecisionUnSupportedFiles 36: [ RUN ] ModuleUnSupported/SetPrecisionUnSupportedFiles.Works/0 @@ -19593,7 +19628,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/NoOptionalOutput.Works/0 (4 ms) +36: [ OK ] ModuleSupported/NoOptionalOutput.Works/0 (3 ms) 36: [ RUN ] ModuleSupported/NoOptionalOutput.Works/1 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19603,7 +19638,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/NoOptionalOutput.Works/1 (7 ms) +36: [ OK ] ModuleSupported/NoOptionalOutput.Works/1 (4 ms) 36: [ RUN ] ModuleSupported/NoOptionalOutput.Works/2 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19613,7 +19648,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/NoOptionalOutput.Works/2 (4 ms) +36: [ OK ] ModuleSupported/NoOptionalOutput.Works/2 (3 ms) 36: [ RUN ] ModuleSupported/NoOptionalOutput.Works/3 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -19624,12 +19659,12 @@ 36: files if necessary. 36: 36: [ OK ] ModuleSupported/NoOptionalOutput.Works/3 (4 ms) -36: [----------] 4 tests from ModuleSupported/NoOptionalOutput (19 ms total) +36: [----------] 4 tests from ModuleSupported/NoOptionalOutput (14 ms total) 36: 36: [----------] Global test environment tear-down -36: [==========] 64 tests from 19 test cases ran. (292 ms total) +36: [==========] 64 tests from 19 test cases ran. (139 ms total) 36: [ PASSED ] 64 tests. -36/54 Test #36: CoordinateIOTests ................... Passed 0.33 sec +36/54 Test #36: CoordinateIOTests ................... Passed 0.15 sec test 37 Start 37: TrajectoryAnalysisUnitTests @@ -19723,10 +19758,10 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.DetectsIncorrectTrajectorySubset (6 ms) +37: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.DetectsIncorrectTrajectorySubset (3 ms) 37: [ RUN ] TrajectoryAnalysisCommandLineRunnerTest.FailsWithTrajectorySubsetWithoutTrajectory 37: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.FailsWithTrajectorySubsetWithoutTrajectory (0 ms) -37: [----------] 4 tests from TrajectoryAnalysisCommandLineRunnerTest (10 ms total) +37: [----------] 4 tests from TrajectoryAnalysisCommandLineRunnerTest (6 ms total) 37: 37: [----------] 11 tests from AngleModuleTest 37: [ RUN ] AngleModuleTest.ComputesSimpleAngles @@ -19762,7 +19797,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] AngleModuleTest.ComputesDihedrals (3 ms) +37: [ OK ] AngleModuleTest.ComputesDihedrals (2 ms) 37: [ RUN ] AngleModuleTest.ComputesVectorPairAngles 37: 37: WARNING: If there are molecules in the input trajectory file @@ -19796,7 +19831,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] AngleModuleTest.ComputesVectorPlanePairAngles (3 ms) +37: [ OK ] AngleModuleTest.ComputesVectorPlanePairAngles (2 ms) 37: [ RUN ] AngleModuleTest.ComputesPlaneZAxisAngles 37: 37: WARNING: If there are molecules in the input trajectory file @@ -19830,7 +19865,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] AngleModuleTest.ComputesVectorSphereNormalZAxisAngles (3 ms) +37: [ OK ] AngleModuleTest.ComputesVectorSphereNormalZAxisAngles (2 ms) 37: [ RUN ] AngleModuleTest.ComputesVectorTimeZeroAngles 37: Reading frames from gro file 'Test system for different angles', 33 atoms. 37: Reading frame 0 time 0.000 @@ -19900,7 +19935,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] AngleModuleTest.HandlesOneVsMultipleVectorAngles (3 ms) +37: [ OK ] AngleModuleTest.HandlesOneVsMultipleVectorAngles (2 ms) 37: [ RUN ] AngleModuleTest.HandlesOneVsMultipleVectorGroupsAngles 37: 37: WARNING: If there are molecules in the input trajectory file @@ -19918,7 +19953,7 @@ 37: files if necessary. 37: 37: [ OK ] AngleModuleTest.HandlesOneVsMultipleVectorGroupsAngles (3 ms) -37: [----------] 11 tests from AngleModuleTest (33 ms total) +37: [----------] 11 tests from AngleModuleTest (29 ms total) 37: 37: [----------] 4 tests from ConvertTrjModuleTest 37: [ RUN ] ConvertTrjModuleTest.WritesNormalOutput @@ -19926,13 +19961,13 @@ 37: Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/freevolume.tpr, VERSION 4.5.5 (single precision) 37: Reading frame 0 time 0.000 Last frame 0 time 0.000 37: Analyzed 1 frames, last time 0.000 -37: [ OK ] ConvertTrjModuleTest.WritesNormalOutput (9 ms) +37: [ OK ] ConvertTrjModuleTest.WritesNormalOutput (8 ms) 37: [ RUN ] ConvertTrjModuleTest.WritesAtomSubset 37: Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/freevolume.tpr, VERSION 4.5.5 (single precision) 37: Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/freevolume.tpr, VERSION 4.5.5 (single precision) 37: Reading frame 0 time 0.000 Last frame 0 time 0.000 37: Analyzed 1 frames, last time 0.000 -37: [ OK ] ConvertTrjModuleTest.WritesAtomSubset (10 ms) +37: [ OK ] ConvertTrjModuleTest.WritesAtomSubset (8 ms) 37: [ RUN ] ConvertTrjModuleTest.WorksWithAtomAdding 37: Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) 37: Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) @@ -19947,7 +19982,7 @@ 37: Reading frame 1 time 0.000 Last frame 1 time 0.000 37: Analyzed 2 frames, last time 0.000 37: [ OK ] ConvertTrjModuleTest.WorksWithAtomsAndSelection (1 ms) -37: [----------] 4 tests from ConvertTrjModuleTest (22 ms total) +37: [----------] 4 tests from ConvertTrjModuleTest (20 ms total) 37: 37: [----------] 3 tests from DistanceModuleTest 37: [ RUN ] DistanceModuleTest.ComputesDistances @@ -20017,7 +20052,7 @@ 37: Average distance: 1.72076 nm 37: Standard deviation: 1.24839 nm 37: [ OK ] DistanceModuleTest.HandlesDynamicSelections (3 ms) -37: [----------] 3 tests from DistanceModuleTest (11 ms total) +37: [----------] 3 tests from DistanceModuleTest (12 ms total) 37: 37: [----------] 2 tests from ExtractClusterModuleTest 37: [ RUN ] ExtractClusterModuleTest.WorksWithAllAtoms @@ -20030,8 +20065,8 @@ 37: Reading frame 0 time 0.000 Reading frame 1 time 0.002 Reading frame 2 time 0.004 Reading frame 3 time 0.006 Reading frame 4 time 0.008 Reading frame 5 time 0.010 Reading frame 6 time 0.012 Reading frame 7 time 0.014 Reading frame 8 time 0.016 Reading frame 9 time 0.018 Reading frame 10 time 0.020 Reading frame 11 time 0.022 Reading frame 12 time 0.024 Reading frame 13 time 0.026 Reading frame 14 time 0.028 Reading frame 15 time 0.030 Reading frame 16 time 0.032 Reading frame 17 time 0.034 Reading frame 18 time 0.036 Reading frame 19 time 0.038 Reading frame 20 time 0.040 37: Analyzed 26 frames, last time 0.050 37: There are 8 clusters containing 26 structures, highest framenr is 25 -37: [ OK ] ExtractClusterModuleTest.WorksWithAtomSubset (1 ms) -37: [----------] 2 tests from ExtractClusterModuleTest (3 ms total) +37: [ OK ] ExtractClusterModuleTest.WorksWithAtomSubset (2 ms) +37: [----------] 2 tests from ExtractClusterModuleTest (4 ms total) 37: 37: [----------] 2 tests from FreeVolumeModuleTest 37: [ RUN ] FreeVolumeModuleTest.ComputesFreeVolume @@ -20095,7 +20130,7 @@ 37: Molecular volume Vm assuming homogeneity: 0.2027 +/- 0.0000 nm^3 37: Molecular van der Waals volume assuming homogeneity: 0.1256 +/- 0.0000 nm^3 37: Fractional free volume 0.194 +/- 0.000 -37: [ OK ] FreeVolumeModuleTest.ComputesFreeVolume (106 ms) +37: [ OK ] FreeVolumeModuleTest.ComputesFreeVolume (102 ms) 37: [ RUN ] FreeVolumeModuleTest.ComputesFreeVolumeSelection 37: Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/freevolume.tpr, VERSION 4.5.5 (single precision) 37: Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/freevolume.tpr, VERSION 4.5.5 (single precision) @@ -20147,8 +20182,8 @@ 37: Molecular volume Vm assuming homogeneity: 0.2027 +/- 0.0000 nm^3 37: Molecular van der Waals volume assuming homogeneity: 0.1247 +/- 0.0000 nm^3 37: Fractional free volume 0.200 +/- 0.000 -37: [ OK ] FreeVolumeModuleTest.ComputesFreeVolumeSelection (106 ms) -37: [----------] 2 tests from FreeVolumeModuleTest (212 ms total) +37: [ OK ] FreeVolumeModuleTest.ComputesFreeVolumeSelection (91 ms) +37: [----------] 2 tests from FreeVolumeModuleTest (193 ms total) 37: 37: [----------] 9 tests from PairDistanceModuleTest 37: [ RUN ] PairDistanceModuleTest.ComputesAllDistances @@ -20184,7 +20219,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] PairDistanceModuleTest.ComputesAllDistancesWithCutoff (4 ms) +37: [ OK ] PairDistanceModuleTest.ComputesAllDistancesWithCutoff (2 ms) 37: [ RUN ] PairDistanceModuleTest.ComputesMinDistanceWithCutoff 37: 37: WARNING: If there are molecules in the input trajectory file @@ -20218,7 +20253,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] PairDistanceModuleTest.ComputesMaxDistance (4 ms) +37: [ OK ] PairDistanceModuleTest.ComputesMaxDistance (2 ms) 37: [ RUN ] PairDistanceModuleTest.ComputesMaxDistanceWithCutoff 37: 37: WARNING: If there are molecules in the input trajectory file @@ -20235,7 +20270,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] PairDistanceModuleTest.ComputesMaxDistanceWithCutoff (3 ms) +37: [ OK ] PairDistanceModuleTest.ComputesMaxDistanceWithCutoff (2 ms) 37: [ RUN ] PairDistanceModuleTest.ComputesGroupedMinDistanceWithCutoff 37: 37: WARNING: If there are molecules in the input trajectory file @@ -20269,7 +20304,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] PairDistanceModuleTest.ComputesGroupedMaxDistanceWithCutoff (4 ms) +37: [ OK ] PairDistanceModuleTest.ComputesGroupedMaxDistanceWithCutoff (2 ms) 37: [ RUN ] PairDistanceModuleTest.CoordinateSelectionIsNotOverwritten 37: 37: WARNING: If there are molecules in the input trajectory file @@ -20303,8 +20338,8 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] PairDistanceModuleTest.CoordinateSelectionIsNotOverwrittenWithExplicitGroup (3 ms) -37: [----------] 9 tests from PairDistanceModuleTest (30 ms total) +37: [ OK ] PairDistanceModuleTest.CoordinateSelectionIsNotOverwrittenWithExplicitGroup (2 ms) +37: [----------] 9 tests from PairDistanceModuleTest (22 ms total) 37: 37: [----------] 5 tests from RdfModuleTest 37: [ RUN ] RdfModuleTest.BasicTest @@ -20323,12 +20358,12 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] RdfModuleTest.BasicTest (28 ms) +37: [ OK ] RdfModuleTest.BasicTest (24 ms) 37: [ RUN ] RdfModuleTest.SelectionsSolelyFromIndexFileWork 37: Reading frames from gro file '216H2O,WATJP01,SPC216,SPC-MODEL,300K,BOX(M)=1.86206NM,WFVG,MAR. 1984', 648 atoms. 37: Reading frame 0 time 0.000 Last frame 0 time 0.000 37: Analyzed 1 frames, last time 0.000 -37: [ OK ] RdfModuleTest.SelectionsSolelyFromIndexFileWork (17 ms) +37: [ OK ] RdfModuleTest.SelectionsSolelyFromIndexFileWork (15 ms) 37: [ RUN ] RdfModuleTest.SelectionsFromBothTopologyFileAndIndexFileWork 37: 37: WARNING: If there are molecules in the input trajectory file @@ -20345,7 +20380,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] RdfModuleTest.SelectionsFromBothTopologyFileAndIndexFileWork (27 ms) +37: [ OK ] RdfModuleTest.SelectionsFromBothTopologyFileAndIndexFileWork (24 ms) 37: [ RUN ] RdfModuleTest.CalculatesSurf 37: 37: WARNING: If there are molecules in the input trajectory file @@ -20362,7 +20397,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] RdfModuleTest.CalculatesSurf (18 ms) +37: [ OK ] RdfModuleTest.CalculatesSurf (14 ms) 37: [ RUN ] RdfModuleTest.CalculatesXY 37: 37: WARNING: If there are molecules in the input trajectory file @@ -20379,8 +20414,8 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] RdfModuleTest.CalculatesXY (30 ms) -37: [----------] 5 tests from RdfModuleTest (120 ms total) +37: [ OK ] RdfModuleTest.CalculatesXY (25 ms) +37: [----------] 5 tests from RdfModuleTest (102 ms total) 37: 37: [----------] 5 tests from SasaModuleTest 37: [ RUN ] SasaModuleTest.BasicTest @@ -20427,7 +20462,7 @@ 37: you providing a run input file. 37: 37: Analyzed topology coordinates -37: [ OK ] SasaModuleTest.BasicTest (15 ms) +37: [ OK ] SasaModuleTest.BasicTest (12 ms) 37: [ RUN ] SasaModuleTest.HandlesSelectedResidues 37: 37: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ @@ -20472,7 +20507,7 @@ 37: you providing a run input file. 37: 37: Analyzed topology coordinates -37: [ OK ] SasaModuleTest.HandlesSelectedResidues (9 ms) +37: [ OK ] SasaModuleTest.HandlesSelectedResidues (7 ms) 37: [ RUN ] SasaModuleTest.WritesConnollySurfaceWithSolute 37: 37: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ @@ -20517,7 +20552,7 @@ 37: you providing a run input file. 37: 37: Analyzed topology coordinates -37: [ OK ] SasaModuleTest.WritesConnollySurfaceWithSolute (9 ms) +37: [ OK ] SasaModuleTest.WritesConnollySurfaceWithSolute (6 ms) 37: [ RUN ] SasaModuleTest.HandlesDynamicOutputGroup 37: 37: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ @@ -20562,7 +20597,7 @@ 37: you providing a run input file. 37: 37: Analyzed topology coordinates -37: [ OK ] SasaModuleTest.HandlesDynamicOutputGroup (12 ms) +37: [ OK ] SasaModuleTest.HandlesDynamicOutputGroup (9 ms) 37: [ RUN ] SasaModuleTest.HandlesDynamicCalculationGroup 37: 37: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ @@ -20607,8 +20642,8 @@ 37: you providing a run input file. 37: 37: Analyzed topology coordinates -37: [ OK ] SasaModuleTest.HandlesDynamicCalculationGroup (11 ms) -37: [----------] 5 tests from SasaModuleTest (56 ms total) +37: [ OK ] SasaModuleTest.HandlesDynamicCalculationGroup (8 ms) +37: [----------] 5 tests from SasaModuleTest (43 ms total) 37: 37: [----------] 8 tests from SelectModuleTest 37: [ RUN ] SelectModuleTest.BasicTest @@ -20629,7 +20664,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] SelectModuleTest.BasicTest (6 ms) +37: [ OK ] SelectModuleTest.BasicTest (4 ms) 37: [ RUN ] SelectModuleTest.HandlesPDBOutputWithNonPDBInput 37: Reading frames from gro file 'Test system', 15 atoms. 37: Reading frame 0 time 0.000 @@ -20648,7 +20683,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] SelectModuleTest.HandlesPDBOutputWithNonPDBInput (5 ms) +37: [ OK ] SelectModuleTest.HandlesPDBOutputWithNonPDBInput (4 ms) 37: [ RUN ] SelectModuleTest.HandlesPDBOutputWithPDBInput 37: Reading frames from gro file 'Test system', 15 atoms. 37: Reading frame 0 time 0.000 @@ -20667,7 +20702,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] SelectModuleTest.HandlesPDBOutputWithPDBInput (4 ms) +37: [ OK ] SelectModuleTest.HandlesPDBOutputWithPDBInput (3 ms) 37: [ RUN ] SelectModuleTest.HandlesMaxPDBOutput 37: Reading frames from gro file 'Test system', 15 atoms. 37: Reading frame 0 time 0.000 @@ -20686,7 +20721,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] SelectModuleTest.HandlesMaxPDBOutput (5 ms) +37: [ OK ] SelectModuleTest.HandlesMaxPDBOutput (4 ms) 37: [ RUN ] SelectModuleTest.HandlesSelectedPDBOutput 37: Reading frames from gro file 'Test system', 15 atoms. 37: Reading frame 0 time 0.000 @@ -20705,7 +20740,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] SelectModuleTest.HandlesSelectedPDBOutput (4 ms) +37: [ OK ] SelectModuleTest.HandlesSelectedPDBOutput (3 ms) 37: [ RUN ] SelectModuleTest.NormalizesSizes 37: 37: WARNING: If there are molecules in the input trajectory file @@ -20722,7 +20757,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] SelectModuleTest.NormalizesSizes (4 ms) +37: [ OK ] SelectModuleTest.NormalizesSizes (3 ms) 37: [ RUN ] SelectModuleTest.WritesResidueNumbers 37: 37: WARNING: If there are molecules in the input trajectory file @@ -20739,7 +20774,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] SelectModuleTest.WritesResidueNumbers (3 ms) +37: [ OK ] SelectModuleTest.WritesResidueNumbers (2 ms) 37: [ RUN ] SelectModuleTest.WritesResidueIndices 37: 37: WARNING: If there are molecules in the input trajectory file @@ -20756,8 +20791,8 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] SelectModuleTest.WritesResidueIndices (3 ms) -37: [----------] 8 tests from SelectModuleTest (34 ms total) +37: [ OK ] SelectModuleTest.WritesResidueIndices (2 ms) +37: [----------] 8 tests from SelectModuleTest (26 ms total) 37: 37: [----------] 10 tests from SurfaceAreaTest 37: [ RUN ] SurfaceAreaTest.ComputesSinglePoint @@ -20769,18 +20804,18 @@ 37: [ RUN ] SurfaceAreaTest.SurfacePoints12 37: [ OK ] SurfaceAreaTest.SurfacePoints12 (0 ms) 37: [ RUN ] SurfaceAreaTest.SurfacePoints32 -37: [ OK ] SurfaceAreaTest.SurfacePoints32 (1 ms) +37: [ OK ] SurfaceAreaTest.SurfacePoints32 (0 ms) 37: [ RUN ] SurfaceAreaTest.SurfacePoints42 37: [ OK ] SurfaceAreaTest.SurfacePoints42 (0 ms) 37: [ RUN ] SurfaceAreaTest.SurfacePoints122 -37: [ OK ] SurfaceAreaTest.SurfacePoints122 (2 ms) +37: [ OK ] SurfaceAreaTest.SurfacePoints122 (0 ms) 37: [ RUN ] SurfaceAreaTest.Computes100Points -37: [ OK ] SurfaceAreaTest.Computes100Points (0 ms) +37: [ OK ] SurfaceAreaTest.Computes100Points (1 ms) 37: [ RUN ] SurfaceAreaTest.Computes100PointsWithRectangularPBC 37: [ OK ] SurfaceAreaTest.Computes100PointsWithRectangularPBC (2 ms) 37: [ RUN ] SurfaceAreaTest.Computes100PointsWithTriclinicPBC 37: [ OK ] SurfaceAreaTest.Computes100PointsWithTriclinicPBC (3 ms) -37: [----------] 10 tests from SurfaceAreaTest (11 ms total) +37: [----------] 10 tests from SurfaceAreaTest (9 ms total) 37: 37: [----------] 4 tests from TopologyInformation 37: [ RUN ] TopologyInformation.CantWorkWithoutReadingAFile @@ -20794,7 +20829,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] TopologyInformation.WorksWithGroFile (5 ms) +37: [ OK ] TopologyInformation.WorksWithGroFile (4 ms) 37: [ RUN ] TopologyInformation.WorksWithPdbFile 37: 37: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -20804,14 +20839,14 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] TopologyInformation.WorksWithPdbFile (5 ms) +37: [ OK ] TopologyInformation.WorksWithPdbFile (3 ms) 37: [ RUN ] TopologyInformation.WorksWithTprFromPdbFile 37: 37: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary/TopologyInformation_WorksWithTprFromPdbFile_lysozyme.mdp]: 37: For a correct single-point energy evaluation with nsteps = 0, use 37: continuation = yes to avoid constraining the input coordinates. 37: -37: Setting the LD random seed to 2147453862 +37: Setting the LD random seed to -271386882 37: Generated 330891 of the 330891 non-bonded parameter combinations 37: Generating 1-4 interactions: fudge = 0.5 37: Generated 330891 of the 330891 1-4 parameter combinations @@ -20845,8 +20880,8 @@ 37: There are: 10 Protein residues 37: Analysing Protein... 37: This run will generate roughly 0 Mb of data -37: [ OK ] TopologyInformation.WorksWithTprFromPdbFile (627 ms) -37: [----------] 4 tests from TopologyInformation (638 ms total) +37: [ OK ] TopologyInformation.WorksWithTprFromPdbFile (570 ms) +37: [----------] 4 tests from TopologyInformation (577 ms total) 37: 37: [----------] 4 tests from TrajectoryModuleTest 37: [ RUN ] TrajectoryModuleTest.BasicTest @@ -20867,7 +20902,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] TrajectoryModuleTest.BasicTest (4 ms) +37: [ OK ] TrajectoryModuleTest.BasicTest (3 ms) 37: [ RUN ] TrajectoryModuleTest.PlotsXOnly 37: Reading frames from gro file 'Test system', 15 atoms. 37: Reading frame 0 time 0.000 @@ -20886,7 +20921,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] TrajectoryModuleTest.PlotsXOnly (3 ms) +37: [ OK ] TrajectoryModuleTest.PlotsXOnly (4 ms) 37: [ RUN ] TrajectoryModuleTest.HandlesNoVelocities 37: Reading frames from gro file 'Test system', 15 atoms. 37: Reading frame 0 time 0.000 @@ -20905,7 +20940,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] TrajectoryModuleTest.HandlesNoVelocities (4 ms) +37: [ OK ] TrajectoryModuleTest.HandlesNoVelocities (3 ms) 37: [ RUN ] TrajectoryModuleTest.HandlesNoForces 37: Reading frames from gro file 'Test system', 15 atoms. 37: Reading frame 0 time 0.000 @@ -20924,8 +20959,8 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] TrajectoryModuleTest.HandlesNoForces (3 ms) -37: [----------] 4 tests from TrajectoryModuleTest (14 ms total) +37: [ OK ] TrajectoryModuleTest.HandlesNoForces (2 ms) +37: [----------] 4 tests from TrajectoryModuleTest (13 ms total) 37: 37: [----------] 5 tests from UnionFinderTest 37: [ RUN ] UnionFinderTest.WorksEmpty @@ -20946,9 +20981,9 @@ 37: [----------] 1 test from MappedUnionFinderTest (0 ms total) 37: 37: [----------] Global test environment tear-down -37: [==========] 82 tests from 16 test cases ran. (1203 ms total) +37: [==========] 82 tests from 16 test cases ran. (1064 ms total) 37: [ PASSED ] 82 tests. -37/54 Test #37: TrajectoryAnalysisUnitTests ......... Passed 1.22 sec +37/54 Test #37: TrajectoryAnalysisUnitTests ......... Passed 1.08 sec test 38 Start 38: EnergyAnalysisUnitTests @@ -20965,8 +21000,8 @@ 38: 38: 38: Wrote 8 lambda values with 101 samples as 808 dH data blocks to /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/energyanalysis/tests/Testing/Temporary/DhdlTest_ExtractDhdl_dhdl.xvg -38: [ OK ] DhdlTest.ExtractDhdl (12 ms) -38: [----------] 1 test from DhdlTest (13 ms total) +38: [ OK ] DhdlTest.ExtractDhdl (9 ms) +38: [----------] 1 test from DhdlTest (9 ms total) 38: 38: [----------] 1 test from OriresTest 38: [ RUN ] OriresTest.ExtractOrires @@ -20977,8 +21012,8 @@ 38: End your selection with 0 38: Selecting all 7 orientation restraints 38: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.002 Reading energy frame 2 time 0.004 Reading energy frame 3 time 0.006 Reading energy frame 4 time 0.008 Reading energy frame 5 time 0.010 Reading energy frame 6 time 0.012 Reading energy frame 7 time 0.014 Reading energy frame 8 time 0.016 Reading energy frame 9 time 0.018 Reading energy frame 10 time 0.020 Last energy frame read 10 time 0.020 -38: [ OK ] OriresTest.ExtractOrires (18 ms) -38: [----------] 1 test from OriresTest (18 ms total) +38: [ OK ] OriresTest.ExtractOrires (11 ms) +38: [----------] 1 test from OriresTest (11 ms total) 38: 38: [----------] 3 tests from EnergyTest 38: [ RUN ] EnergyTest.ExtractEnergy @@ -21038,7 +21073,7 @@ 38: Coul. recip. 302.771 2.8 17.5152 12.5403 (kJ/mol) 38: Kinetic En. 6132.38 0.42 119.428 -0.266996 (kJ/mol) 38: Pres. DC -268.49 3 8.52175 13.2804 (bar) -38: [ OK ] EnergyTest.ExtractEnergyByNumber (11 ms) +38: [ OK ] EnergyTest.ExtractEnergyByNumber (3 ms) 38: [ RUN ] EnergyTest.ExtractEnergyMixed 38: Opened /build/reproducible-path/gromacs-2020.6/src/gromacs/energyanalysis/tests/ener.edr as single precision energy file 38: @@ -21069,7 +21104,7 @@ 38: Box-Z 2.92457 0.0054 0.0151558 0.0234974 (nm) 38: Volume 25.0162 0.14 0.386769 0.598615 (nm^3) 38: [ OK ] EnergyTest.ExtractEnergyMixed (2 ms) -38: [----------] 3 tests from EnergyTest (16 ms total) +38: [----------] 3 tests from EnergyTest (9 ms total) 38: 38: [----------] 2 tests from ViscosityTest 38: [ RUN ] ViscosityTest.EinsteinViscosity @@ -21093,7 +21128,7 @@ 38: Temperature 300.001 0.02 5.8425 -0.0130558 (K) 38: Volume 25.0162 0.14 0.386769 0.598615 (nm^3) 38: Pressure 5.34371 4.1 605.307 -4.88771 (bar) -38: [ OK ] ViscosityTest.EinsteinViscosity (285 ms) +38: [ OK ] ViscosityTest.EinsteinViscosity (132 ms) 38: [ RUN ] ViscosityTest.EinsteinViscosityIntegral 38: Opened /build/reproducible-path/gromacs-2020.6/src/gromacs/energyanalysis/tests/ener.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.200 Reading energy frame 2 time 0.400 Reading energy frame 3 time 0.600 Reading energy frame 4 time 0.800 Reading energy frame 5 time 1.000 Reading energy frame 6 time 1.200 Reading energy frame 7 time 1.400 Reading energy frame 8 time 1.600 Reading energy frame 9 time 1.800 Reading energy frame 10 time 2.000 Reading energy frame 11 time 2.200 Reading energy frame 12 time 2.400 Reading energy frame 13 time 2.600 Reading energy frame 14 time 2.800 Reading energy frame 15 time 3.000 Reading energy frame 16 time 3.200 Reading energy frame 17 time 3.400 Reading energy frame 18 time 3.600 Reading energy frame 19 time 3.800 Reading energy frame 20 time 4.000 Reading energy frame 30 time 6.000 Reading energy frame 40 time 8.000 Reading energy frame 50 time 10.000 Last energy frame read 50 time 10.000 @@ -21115,13 +21150,13 @@ 38: Temperature 300.001 0.02 5.8425 -0.0130558 (K) 38: Volume 25.0162 0.14 0.386769 0.598615 (nm^3) 38: Pressure 5.34371 4.1 605.307 -4.88771 (bar) -38: [ OK ] ViscosityTest.EinsteinViscosityIntegral (256 ms) -38: [----------] 2 tests from ViscosityTest (541 ms total) +38: [ OK ] ViscosityTest.EinsteinViscosityIntegral (111 ms) +38: [----------] 2 tests from ViscosityTest (243 ms total) 38: 38: [----------] Global test environment tear-down -38: [==========] 7 tests from 4 test cases ran. (589 ms total) +38: [==========] 7 tests from 4 test cases ran. (274 ms total) 38: [ PASSED ] 7 tests. -38/54 Test #38: EnergyAnalysisUnitTests ............. Passed 0.63 sec +38/54 Test #38: EnergyAnalysisUnitTests ............. Passed 0.29 sec test 39 Start 39: ToolUnitTests @@ -21135,7 +21170,7 @@ 39: For a correct single-point energy evaluation with nsteps = 0, use 39: continuation = yes to avoid constraining the input coordinates. 39: -39: Setting the LD random seed to 2063589359 +39: Setting the LD random seed to -684861449 39: Generated 330891 of the 330891 non-bonded parameter combinations 39: Generating 1-4 interactions: fudge = 0.5 39: Generated 330891 of the 330891 1-4 parameter combinations @@ -21181,7 +21216,7 @@ 39: comm-mode = Linear 39: nstcomm = 100 39: bd-fric = 0 -39: ld-seed = 2063589359 +39: ld-seed = -684861449 39: emtol = 10 39: emstep = 0.01 39: niter = 20 @@ -24098,12 +24133,12 @@ 39: Compressed X: 156 (total 156 atoms) 39: Or. Res. Fit: 156 (total 156 atoms) 39: QMMM : 156 (total 156 atoms) -39: [ OK ] DumpTest.WorksWithTpr (27 ms) +39: [ OK ] DumpTest.WorksWithTpr (50 ms) 39: [ RUN ] DumpTest.WorksWithTprAndMdpWriting 39: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tools/tests/Testing/Temporary/DumpTest_lysozyme.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 39: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/tools/tests/Testing/Temporary/DumpTest_lysozyme.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 39: [ OK ] DumpTest.WorksWithTprAndMdpWriting (1 ms) -39: [----------] 2 tests from DumpTest (28 ms total) +39: [----------] 2 tests from DumpTest (51 ms total) 39: 39: [----------] 4 tests from ReportMethodsTest 39: @@ -24111,7 +24146,7 @@ 39: For a correct single-point energy evaluation with nsteps = 0, use 39: continuation = yes to avoid constraining the input coordinates. 39: -39: Setting the LD random seed to -134240267 +39: Setting the LD random seed to 536868026 39: Generated 330891 of the 330891 non-bonded parameter combinations 39: Generating 1-4 interactions: fudge = 0.5 39: Generated 330891 of the 330891 1-4 parameter combinations @@ -24162,8 +24197,8 @@ 39: The Cut-off algorithm was used for electrostatic interactions. 39: with a cut-off of 1 nm. 39: A single cut-off of 1.1 nm was used for Van der Waals interactions. -39: [ OK ] ReportMethodsTest.ToolEndToEndTest (0 ms) -39: [----------] 4 tests from ReportMethodsTest (1 ms total) +39: [ OK ] ReportMethodsTest.ToolEndToEndTest (1 ms) +39: [----------] 4 tests from ReportMethodsTest (2 ms total) 39: 39: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset 39: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/0 @@ -24240,8 +24275,8 @@ 39: Note that major changes are planned in future for trjconv, to improve usability and utility. 39: Select group for output 39: Selected 2: 'SecondWaterMolecule' -39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/5 (1 ms) -39: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset (12 ms total) +39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/5 (2 ms) +39: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset (13 ms total) 39: 39: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile 39: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/0 @@ -24254,7 +24289,7 @@ 39: Note that major changes are planned in future for trjconv, to improve usability and utility. 39: Select group for output 39: Selected 2: 'SecondWaterMolecule' -39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/0 (1 ms) +39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/0 (0 ms) 39: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/1 39: Will write trr: Trajectory in portable xdr format 39: Group 0 ( System) has 6 elements @@ -24267,7 +24302,7 @@ 39: Note that major changes are planned in future for trjconv, to improve usability and utility. 39: Select group for output 39: Selected 2: 'SecondWaterMolecule' -39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/1 (0 ms) +39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/1 (1 ms) 39: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/2 39: Will write trr: Trajectory in portable xdr format 39: Group 0 ( System) has 6 elements @@ -24278,7 +24313,7 @@ 39: Note that major changes are planned in future for trjconv, to improve usability and utility. 39: Select group for output 39: Selected 2: 'SecondWaterMolecule' -39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/2 (1 ms) +39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/2 (0 ms) 39: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/3 39: Will write trr: Trajectory in portable xdr format 39: Group 0 ( System) has 6 elements @@ -24292,7 +24327,7 @@ 39: Note that major changes are planned in future for trjconv, to improve usability and utility. 39: Select group for output 39: Selected 2: 'SecondWaterMolecule' -39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/3 (0 ms) +39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/3 (1 ms) 39: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/4 39: Will write trr: Trajectory in portable xdr format 39: Group 0 ( System) has 6 elements @@ -24306,7 +24341,7 @@ 39: Note that major changes are planned in future for trjconv, to improve usability and utility. 39: Select group for output 39: Selected 2: 'SecondWaterMolecule' -39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/4 (1 ms) +39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/4 (0 ms) 39: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/5 39: Will write trr: Trajectory in portable xdr format 39: Group 0 ( System) has 6 elements @@ -24318,12 +24353,12 @@ 39: Select group for output 39: Selected 2: 'SecondWaterMolecule' 39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/5 (0 ms) -39: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile (3 ms total) +39: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile (2 ms total) 39: 39: [----------] Global test environment tear-down -39: [==========] 18 tests from 4 test cases ran. (1226 ms total) +39: [==========] 18 tests from 4 test cases ran. (1151 ms total) 39: [ PASSED ] 18 tests. -39/54 Test #39: ToolUnitTests ....................... Passed 1.26 sec +39/54 Test #39: ToolUnitTests ....................... Passed 1.17 sec test 40 Start 40: FileIOTests @@ -24355,8 +24390,8 @@ 40: [ RUN ] MrcDensityMap.ReadsCoordinateTransformationFromFile 40: [ OK ] MrcDensityMap.ReadsCoordinateTransformationFromFile (0 ms) 40: [ RUN ] MrcDensityMap.ReadsDensityDataFromFile -40: [ OK ] MrcDensityMap.ReadsDensityDataFromFile (2 ms) -40: [----------] 4 tests from MrcDensityMap (3 ms total) +40: [ OK ] MrcDensityMap.ReadsDensityDataFromFile (1 ms) +40: [----------] 4 tests from MrcDensityMap (2 ms total) 40: 40: [----------] 8 tests from MrcDensityMapHeaderTest 40: [ RUN ] MrcDensityMapHeaderTest.DataSizeIsZeroForDefaultHeader @@ -24426,12 +24461,12 @@ 40: 40: 40: [ OK ] ReadTest.get_ereal_WarnsAboutString (0 ms) -40: [----------] 9 tests from ReadTest (1 ms total) +40: [----------] 9 tests from ReadTest (0 ms total) 40: 40: [----------] 1 test from FileIOXdrSerializerTest 40: [ RUN ] FileIOXdrSerializerTest.SizeIsCorrect -40: [ OK ] FileIOXdrSerializerTest.SizeIsCorrect (0 ms) -40: [----------] 1 test from FileIOXdrSerializerTest (0 ms total) +40: [ OK ] FileIOXdrSerializerTest.SizeIsCorrect (1 ms) +40: [----------] 1 test from FileIOXdrSerializerTest (1 ms total) 40: 40: [----------] 2 tests from TngTest 40: [ RUN ] TngTest.CanOpenTngFile @@ -24448,15 +24483,15 @@ 40: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 40: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 (0 ms) 40: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 -40: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 (5 ms) +40: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 (1 ms) 40: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 -40: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 (0 ms) -40: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest (5 ms total) +40: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 (1 ms) +40: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest (2 ms total) 40: 40: [----------] Global test environment tear-down -40: [==========] 33 tests from 8 test cases ran. (11 ms total) +40: [==========] 33 tests from 8 test cases ran. (7 ms total) 40: [ PASSED ] 33 tests. -40/54 Test #40: FileIOTests ......................... Passed 0.05 sec +40/54 Test #40: FileIOTests ......................... Passed 0.02 sec test 41 Start 41: SelectionUnitTests @@ -24477,9 +24512,9 @@ 41: [ RUN ] IndexBlockTest.CreatesResidueBlocksForSimpleTopology 41: [ OK ] IndexBlockTest.CreatesResidueBlocksForSimpleTopology (0 ms) 41: [ RUN ] IndexBlockTest.CreatesResidueBlocksForComplexTopology -41: [ OK ] IndexBlockTest.CreatesResidueBlocksForComplexTopology (1 ms) +41: [ OK ] IndexBlockTest.CreatesResidueBlocksForComplexTopology (0 ms) 41: [ RUN ] IndexBlockTest.CreatesMoleculeBlocksForSimpleTopology -41: [ OK ] IndexBlockTest.CreatesMoleculeBlocksForSimpleTopology (0 ms) +41: [ OK ] IndexBlockTest.CreatesMoleculeBlocksForSimpleTopology (1 ms) 41: [ RUN ] IndexBlockTest.CreatesMoleculeBlocksForComplexTopology 41: [ OK ] IndexBlockTest.CreatesMoleculeBlocksForComplexTopology (0 ms) 41: [ RUN ] IndexBlockTest.CreatesSingleBlock @@ -24506,7 +24541,7 @@ 41: [ RUN ] IndexMapTest.InitializesAtomBlock 41: [ OK ] IndexMapTest.InitializesAtomBlock (0 ms) 41: [ RUN ] IndexMapTest.InitializesOrgIdGroupAtom -41: [ OK ] IndexMapTest.InitializesOrgIdGroupAtom (1 ms) +41: [ OK ] IndexMapTest.InitializesOrgIdGroupAtom (0 ms) 41: [ RUN ] IndexMapTest.InitializesOrgIdGroupSingle 41: [ OK ] IndexMapTest.InitializesOrgIdGroupSingle (0 ms) 41: [ RUN ] IndexMapTest.InitializesOrgIdGroupResidue @@ -24524,8 +24559,8 @@ 41: [ RUN ] IndexMapTest.MapsResidueBlocksWithMask 41: [ OK ] IndexMapTest.MapsResidueBlocksWithMask (0 ms) 41: [ RUN ] IndexMapTest.HandlesMultipleRequests -41: [ OK ] IndexMapTest.HandlesMultipleRequests (4 ms) -41: [----------] 11 tests from IndexMapTest (6 ms total) +41: [ OK ] IndexMapTest.HandlesMultipleRequests (1 ms) +41: [----------] 11 tests from IndexMapTest (2 ms total) 41: 41: [----------] 3 tests from IndexGroupsAndNamesTest 41: [ RUN ] IndexGroupsAndNamesTest.containsNames @@ -24538,23 +24573,23 @@ 41: 41: [----------] 15 tests from NeighborhoodSearchTest 41: [ RUN ] NeighborhoodSearchTest.SimpleSearch -41: [ OK ] NeighborhoodSearchTest.SimpleSearch (16 ms) +41: [ OK ] NeighborhoodSearchTest.SimpleSearch (14 ms) 41: [ RUN ] NeighborhoodSearchTest.SimpleSearchXY -41: [ OK ] NeighborhoodSearchTest.SimpleSearchXY (15 ms) +41: [ OK ] NeighborhoodSearchTest.SimpleSearchXY (14 ms) 41: [ RUN ] NeighborhoodSearchTest.GridSearchBox -41: [ OK ] NeighborhoodSearchTest.GridSearchBox (3 ms) +41: [ OK ] NeighborhoodSearchTest.GridSearchBox (6 ms) 41: [ RUN ] NeighborhoodSearchTest.GridSearchTriclinic -41: [ OK ] NeighborhoodSearchTest.GridSearchTriclinic (10 ms) +41: [ OK ] NeighborhoodSearchTest.GridSearchTriclinic (9 ms) 41: [ RUN ] NeighborhoodSearchTest.GridSearch2DPBC -41: [ OK ] NeighborhoodSearchTest.GridSearch2DPBC (5 ms) +41: [ OK ] NeighborhoodSearchTest.GridSearch2DPBC (4 ms) 41: [ RUN ] NeighborhoodSearchTest.GridSearchNoPBC -41: [ OK ] NeighborhoodSearchTest.GridSearchNoPBC (1 ms) +41: [ OK ] NeighborhoodSearchTest.GridSearchNoPBC (2 ms) 41: [ RUN ] NeighborhoodSearchTest.GridSearchXYBox -41: [ OK ] NeighborhoodSearchTest.GridSearchXYBox (3 ms) +41: [ OK ] NeighborhoodSearchTest.GridSearchXYBox (2 ms) 41: [ RUN ] NeighborhoodSearchTest.SimpleSelfPairsSearch 41: [ OK ] NeighborhoodSearchTest.SimpleSelfPairsSearch (0 ms) 41: [ RUN ] NeighborhoodSearchTest.GridSelfPairsSearch -41: [ OK ] NeighborhoodSearchTest.GridSelfPairsSearch (41 ms) +41: [ OK ] NeighborhoodSearchTest.GridSelfPairsSearch (38 ms) 41: [ RUN ] NeighborhoodSearchTest.HandlesConcurrentSearches 41: [ OK ] NeighborhoodSearchTest.HandlesConcurrentSearches (0 ms) 41: [ RUN ] NeighborhoodSearchTest.HandlesNoPBC @@ -24564,14 +24599,14 @@ 41: [ RUN ] NeighborhoodSearchTest.HandlesSkippingPairs 41: [ OK ] NeighborhoodSearchTest.HandlesSkippingPairs (0 ms) 41: [ RUN ] NeighborhoodSearchTest.SimpleSearchExclusions -41: [ OK ] NeighborhoodSearchTest.SimpleSearchExclusions (4 ms) +41: [ OK ] NeighborhoodSearchTest.SimpleSearchExclusions (3 ms) 41: [ RUN ] NeighborhoodSearchTest.GridSearchExclusions -41: [ OK ] NeighborhoodSearchTest.GridSearchExclusions (1 ms) -41: [----------] 15 tests from NeighborhoodSearchTest (99 ms total) +41: [ OK ] NeighborhoodSearchTest.GridSearchExclusions (0 ms) +41: [----------] 15 tests from NeighborhoodSearchTest (93 ms total) 41: 41: [----------] 12 tests from PositionCalculationTest 41: [ RUN ] PositionCalculationTest.ComputesAtomPositions -41: [ OK ] PositionCalculationTest.ComputesAtomPositions (0 ms) +41: [ OK ] PositionCalculationTest.ComputesAtomPositions (1 ms) 41: [ RUN ] PositionCalculationTest.ComputesResidueCOGPositions 41: [ OK ] PositionCalculationTest.ComputesResidueCOGPositions (0 ms) 41: [ RUN ] PositionCalculationTest.ComputesResidueCOMPositions @@ -24583,7 +24618,7 @@ 41: [ RUN ] PositionCalculationTest.ComputesPositionsWithCompleteWhole 41: [ OK ] PositionCalculationTest.ComputesPositionsWithCompleteWhole (0 ms) 41: [ RUN ] PositionCalculationTest.ComputesPositionsWithCompleteMax -41: [ OK ] PositionCalculationTest.ComputesPositionsWithCompleteMax (0 ms) +41: [ OK ] PositionCalculationTest.ComputesPositionsWithCompleteMax (1 ms) 41: [ RUN ] PositionCalculationTest.ComputesPositionMask 41: [ OK ] PositionCalculationTest.ComputesPositionMask (0 ms) 41: [ RUN ] PositionCalculationTest.HandlesFramesWithLessAtoms @@ -24591,36 +24626,36 @@ 41: [ RUN ] PositionCalculationTest.HandlesFramesWithLessAtoms2 41: [ OK ] PositionCalculationTest.HandlesFramesWithLessAtoms2 (0 ms) 41: [ RUN ] PositionCalculationTest.HandlesIdenticalStaticCalculations -41: [ OK ] PositionCalculationTest.HandlesIdenticalStaticCalculations (1 ms) +41: [ OK ] PositionCalculationTest.HandlesIdenticalStaticCalculations (0 ms) 41: [ RUN ] PositionCalculationTest.HandlesOverlappingStaticCalculations -41: [ OK ] PositionCalculationTest.HandlesOverlappingStaticCalculations (0 ms) +41: [ OK ] PositionCalculationTest.HandlesOverlappingStaticCalculations (1 ms) 41: [----------] 12 tests from PositionCalculationTest (3 ms total) 41: 41: [----------] 29 tests from SelectionCollectionTest 41: [ RUN ] SelectionCollectionTest.HandlesNoSelections 41: [ OK ] SelectionCollectionTest.HandlesNoSelections (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesNoSelectionsWithDefaultPositionType -41: [ OK ] SelectionCollectionTest.HandlesNoSelectionsWithDefaultPositionType (1 ms) +41: [ OK ] SelectionCollectionTest.HandlesNoSelectionsWithDefaultPositionType (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesVelocityAndForceRequests -41: [ OK ] SelectionCollectionTest.HandlesVelocityAndForceRequests (0 ms) +41: [ OK ] SelectionCollectionTest.HandlesVelocityAndForceRequests (1 ms) 41: [ RUN ] SelectionCollectionTest.HandlesForceRequestForCenterOfGeometry -41: [ OK ] SelectionCollectionTest.HandlesForceRequestForCenterOfGeometry (1 ms) +41: [ OK ] SelectionCollectionTest.HandlesForceRequestForCenterOfGeometry (0 ms) 41: [ RUN ] SelectionCollectionTest.ParsesSelectionsFromFile 41: [ OK ] SelectionCollectionTest.ParsesSelectionsFromFile (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesAtypicalWhitespace -41: [ OK ] SelectionCollectionTest.HandlesAtypicalWhitespace (1 ms) +41: [ OK ] SelectionCollectionTest.HandlesAtypicalWhitespace (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesInvalidRegularExpressions -41: [ OK ] SelectionCollectionTest.HandlesInvalidRegularExpressions (0 ms) +41: [ OK ] SelectionCollectionTest.HandlesInvalidRegularExpressions (1 ms) 41: [ RUN ] SelectionCollectionTest.HandlesMissingMethodParamValue 41: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesMissingMethodParamValue2 -41: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue2 (1 ms) +41: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue2 (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesMissingMethodParamValue3 41: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue3 (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser1 -41: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser1 (0 ms) +41: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser1 (1 ms) 41: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser2 -41: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser2 (1 ms) +41: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser2 (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed1 41: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed1 (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed2 @@ -24632,17 +24667,17 @@ 41: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroup 41: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroup (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed -41: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed (1 ms) +41: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed2 -41: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed2 (0 ms) +41: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed2 (1 ms) 41: [ RUN ] SelectionCollectionTest.RecoversFromMissingMoleculeInfo -41: [ OK ] SelectionCollectionTest.RecoversFromMissingMoleculeInfo (1 ms) +41: [ OK ] SelectionCollectionTest.RecoversFromMissingMoleculeInfo (0 ms) 41: [ RUN ] SelectionCollectionTest.RecoversFromMissingAtomTypes 41: [ OK ] SelectionCollectionTest.RecoversFromMissingAtomTypes (0 ms) 41: [ RUN ] SelectionCollectionTest.RecoversFromMissingPDBInfo -41: [ OK ] SelectionCollectionTest.RecoversFromMissingPDBInfo (0 ms) +41: [ OK ] SelectionCollectionTest.RecoversFromMissingPDBInfo (1 ms) 41: [ RUN ] SelectionCollectionTest.RecoversFromInvalidPermutation -41: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation (1 ms) +41: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation (0 ms) 41: [ RUN ] SelectionCollectionTest.RecoversFromInvalidPermutation2 41: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation2 (0 ms) 41: [ RUN ] SelectionCollectionTest.RecoversFromInvalidPermutation3 @@ -24652,10 +24687,10 @@ 41: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets2 41: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets2 (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets3 -41: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets3 (1 ms) +41: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets3 (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets4 41: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets4 (0 ms) -41: [----------] 29 tests from SelectionCollectionTest (11 ms total) +41: [----------] 29 tests from SelectionCollectionTest (7 ms total) 41: 41: [----------] 14 tests from SelectionCollectionInteractiveTest 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesBasicInput @@ -24667,46 +24702,46 @@ 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInput 41: [ OK ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInput (0 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesStatusWithGroups -41: [ OK ] SelectionCollectionInteractiveTest.HandlesStatusWithGroups (1 ms) +41: [ OK ] SelectionCollectionInteractiveTest.HandlesStatusWithGroups (0 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesStatusWithExistingSelections -41: [ OK ] SelectionCollectionInteractiveTest.HandlesStatusWithExistingSelections (0 ms) +41: [ OK ] SelectionCollectionInteractiveTest.HandlesStatusWithExistingSelections (1 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputStatus -41: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputStatus (1 ms) +41: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputStatus (0 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInputStatus -41: [ OK ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInputStatus (0 ms) +41: [ OK ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInputStatus (1 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesMultiSelectionInputStatus -41: [ OK ] SelectionCollectionInteractiveTest.HandlesMultiSelectionInputStatus (1 ms) +41: [ OK ] SelectionCollectionInteractiveTest.HandlesMultiSelectionInputStatus (0 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesNoFinalNewline 41: [ OK ] SelectionCollectionInteractiveTest.HandlesNoFinalNewline (0 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesEmptySelections -41: [ OK ] SelectionCollectionInteractiveTest.HandlesEmptySelections (1 ms) +41: [ OK ] SelectionCollectionInteractiveTest.HandlesEmptySelections (0 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesMultipleSelectionsOnLine 41: [ OK ] SelectionCollectionInteractiveTest.HandlesMultipleSelectionsOnLine (0 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesNoninteractiveInput 41: [ OK ] SelectionCollectionInteractiveTest.HandlesNoninteractiveInput (0 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputNoninteractively -41: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputNoninteractively (1 ms) -41: [----------] 14 tests from SelectionCollectionInteractiveTest (7 ms total) +41: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputNoninteractively (0 ms) +41: [----------] 14 tests from SelectionCollectionInteractiveTest (5 ms total) 41: 41: [----------] 66 tests from SelectionCollectionDataTest 41: [ RUN ] SelectionCollectionDataTest.HandlesAllNone -41: [ OK ] SelectionCollectionDataTest.HandlesAllNone (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesAllNone (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesAtomnr -41: [ OK ] SelectionCollectionDataTest.HandlesAtomnr (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesAtomnr (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesResnr -41: [ OK ] SelectionCollectionDataTest.HandlesResnr (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesResnr (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesResIndex -41: [ OK ] SelectionCollectionDataTest.HandlesResIndex (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesResIndex (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesMolIndex 41: [ OK ] SelectionCollectionDataTest.HandlesMolIndex (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesAtomname 41: [ OK ] SelectionCollectionDataTest.HandlesAtomname (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesPdbAtomname -41: [ OK ] SelectionCollectionDataTest.HandlesPdbAtomname (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesPdbAtomname (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesAtomtype -41: [ OK ] SelectionCollectionDataTest.HandlesAtomtype (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesAtomtype (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesChain -41: [ OK ] SelectionCollectionDataTest.HandlesChain (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesChain (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesMass 41: [ OK ] SelectionCollectionDataTest.HandlesMass (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesCharge @@ -24718,7 +24753,7 @@ 41: [ RUN ] SelectionCollectionDataTest.HandlesOccupancy 41: [ OK ] SelectionCollectionDataTest.HandlesOccupancy (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesBeta -41: [ OK ] SelectionCollectionDataTest.HandlesBeta (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesBeta (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesResname 41: [ OK ] SelectionCollectionDataTest.HandlesResname (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesCoordinateKeywords @@ -24726,33 +24761,33 @@ 41: [ RUN ] SelectionCollectionDataTest.HandlesSameResidue 41: [ OK ] SelectionCollectionDataTest.HandlesSameResidue (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesSameResidueName -41: [ OK ] SelectionCollectionDataTest.HandlesSameResidueName (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesSameResidueName (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesPositionKeywords 41: [ OK ] SelectionCollectionDataTest.HandlesPositionKeywords (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesDistanceKeyword -41: [ OK ] SelectionCollectionDataTest.HandlesDistanceKeyword (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesDistanceKeyword (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesMinDistanceKeyword 41: [ OK ] SelectionCollectionDataTest.HandlesMinDistanceKeyword (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesWithinKeyword 41: [ OK ] SelectionCollectionDataTest.HandlesWithinKeyword (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesInSolidAngleKeyword -41: [ OK ] SelectionCollectionDataTest.HandlesInSolidAngleKeyword (4 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesInSolidAngleKeyword (3 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesPermuteModifier 41: [ OK ] SelectionCollectionDataTest.HandlesPermuteModifier (2 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesPlusModifier -41: [ OK ] SelectionCollectionDataTest.HandlesPlusModifier (2 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesPlusModifier (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesMergeModifier 41: [ OK ] SelectionCollectionDataTest.HandlesMergeModifier (2 ms) 41: [ RUN ] SelectionCollectionDataTest.ComputesMassesAndCharges -41: [ OK ] SelectionCollectionDataTest.ComputesMassesAndCharges (2 ms) +41: [ OK ] SelectionCollectionDataTest.ComputesMassesAndCharges (1 ms) 41: [ RUN ] SelectionCollectionDataTest.ComputesMassesAndChargesWithoutTopology -41: [ OK ] SelectionCollectionDataTest.ComputesMassesAndChargesWithoutTopology (0 ms) +41: [ OK ] SelectionCollectionDataTest.ComputesMassesAndChargesWithoutTopology (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesFramesWithAtomSubsets 41: [ OK ] SelectionCollectionDataTest.HandlesFramesWithAtomSubsets (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesSelectionNames 41: [ OK ] SelectionCollectionDataTest.HandlesSelectionNames (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesIndexGroupsInSelections -41: [ OK ] SelectionCollectionDataTest.HandlesIndexGroupsInSelections (2 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesIndexGroupsInSelections (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesIndexGroupsInSelectionsDelayed 41: [ OK ] SelectionCollectionDataTest.HandlesIndexGroupsInSelectionsDelayed (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelections @@ -24762,19 +24797,19 @@ 41: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositions 41: [ OK ] SelectionCollectionDataTest.HandlesConstantPositions (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositionsWithModifiers -41: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionsWithModifiers (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionsWithModifiers (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesWithinConstantPositions -41: [ OK ] SelectionCollectionDataTest.HandlesWithinConstantPositions (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesWithinConstantPositions (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesOverlappingIntegerRanges -41: [ OK ] SelectionCollectionDataTest.HandlesOverlappingIntegerRanges (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesOverlappingIntegerRanges (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesOverlappingRealRanges -41: [ OK ] SelectionCollectionDataTest.HandlesOverlappingRealRanges (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesOverlappingRealRanges (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesForcedStringMatchingMode -41: [ OK ] SelectionCollectionDataTest.HandlesForcedStringMatchingMode (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesForcedStringMatchingMode (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesWildcardMatching -41: [ OK ] SelectionCollectionDataTest.HandlesWildcardMatching (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesWildcardMatching (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesRegexMatching -41: [ OK ] SelectionCollectionDataTest.HandlesRegexMatching (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesRegexMatching (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesBasicBoolean 41: [ OK ] SelectionCollectionDataTest.HandlesBasicBoolean (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesDynamicAtomValuedParameters @@ -24784,9 +24819,9 @@ 41: [ RUN ] SelectionCollectionDataTest.HandlesEmptyReferenceForSame 41: [ OK ] SelectionCollectionDataTest.HandlesEmptyReferenceForSame (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesPositionModifiersForKeywords -41: [ OK ] SelectionCollectionDataTest.HandlesPositionModifiersForKeywords (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesPositionModifiersForKeywords (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesPositionModifiersForMethods -41: [ OK ] SelectionCollectionDataTest.HandlesPositionModifiersForMethods (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesPositionModifiersForMethods (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesKeywordOfPositions 41: [ OK ] SelectionCollectionDataTest.HandlesKeywordOfPositions (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesKeywordOfPositionsInArithmetic @@ -24794,19 +24829,19 @@ 41: [ RUN ] SelectionCollectionDataTest.HandlesNumericComparisons 41: [ OK ] SelectionCollectionDataTest.HandlesNumericComparisons (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesArithmeticExpressions -41: [ OK ] SelectionCollectionDataTest.HandlesArithmeticExpressions (2 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesArithmeticExpressions (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesNumericVariables 41: [ OK ] SelectionCollectionDataTest.HandlesNumericVariables (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesComplexNumericVariables -41: [ OK ] SelectionCollectionDataTest.HandlesComplexNumericVariables (2 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesComplexNumericVariables (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesPositionVariables 41: [ OK ] SelectionCollectionDataTest.HandlesPositionVariables (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesPositionVariableInModifier 41: [ OK ] SelectionCollectionDataTest.HandlesPositionVariableInModifier (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositionInVariable -41: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionInVariable (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionInVariable (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesNumericConstantsInVariables -41: [ OK ] SelectionCollectionDataTest.HandlesNumericConstantsInVariables (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesNumericConstantsInVariables (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysis 41: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysis (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithVariables @@ -24820,14 +24855,14 @@ 41: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups 41: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups2 -41: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups2 (1 ms) -41: [----------] 66 tests from SelectionCollectionDataTest (56 ms total) +41: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups2 (0 ms) +41: [----------] 66 tests from SelectionCollectionDataTest (43 ms total) 41: 41: [----------] 17 tests from SelectionOptionTest 41: [ RUN ] SelectionOptionTest.ParsesSimpleSelection 41: [ OK ] SelectionOptionTest.ParsesSimpleSelection (0 ms) 41: [ RUN ] SelectionOptionTest.HandlesDynamicSelectionWhenStaticRequired -41: [ OK ] SelectionOptionTest.HandlesDynamicSelectionWhenStaticRequired (1 ms) +41: [ OK ] SelectionOptionTest.HandlesDynamicSelectionWhenStaticRequired (0 ms) 41: [ RUN ] SelectionOptionTest.HandlesNonAtomicSelectionWhenAtomsRequired 41: [ OK ] SelectionOptionTest.HandlesNonAtomicSelectionWhenAtomsRequired (0 ms) 41: [ RUN ] SelectionOptionTest.ChecksForSortedAtomsWhenRequired @@ -24849,24 +24884,24 @@ 41: [ RUN ] SelectionOptionTest.HandlesTooManySelectionsWithAdjuster 41: [ OK ] SelectionOptionTest.HandlesTooManySelectionsWithAdjuster (0 ms) 41: [ RUN ] SelectionOptionTest.HandlesTooFewSelectionsWithAdjuster -41: [ OK ] SelectionOptionTest.HandlesTooFewSelectionsWithAdjuster (1 ms) +41: [ OK ] SelectionOptionTest.HandlesTooFewSelectionsWithAdjuster (0 ms) 41: [ RUN ] SelectionOptionTest.HandlesDelayedRequiredSelection 41: [ OK ] SelectionOptionTest.HandlesDelayedRequiredSelection (0 ms) 41: [ RUN ] SelectionOptionTest.HandlesTooFewDelayedRequiredSelections -41: [ OK ] SelectionOptionTest.HandlesTooFewDelayedRequiredSelections (0 ms) +41: [ OK ] SelectionOptionTest.HandlesTooFewDelayedRequiredSelections (1 ms) 41: [ RUN ] SelectionOptionTest.HandlesDelayedOptionalSelection 41: [ OK ] SelectionOptionTest.HandlesDelayedOptionalSelection (0 ms) 41: [ RUN ] SelectionOptionTest.HandlesDelayedSelectionWithAdjuster -41: [ OK ] SelectionOptionTest.HandlesDelayedSelectionWithAdjuster (1 ms) -41: [----------] 17 tests from SelectionOptionTest (5 ms total) +41: [ OK ] SelectionOptionTest.HandlesDelayedSelectionWithAdjuster (0 ms) +41: [----------] 17 tests from SelectionOptionTest (3 ms total) 41: 41: [----------] 9 tests from SelectionFileOptionTest 41: [ RUN ] SelectionFileOptionTest.HandlesSingleSelectionOptionFromFile -41: [ OK ] SelectionFileOptionTest.HandlesSingleSelectionOptionFromFile (1 ms) +41: [ OK ] SelectionFileOptionTest.HandlesSingleSelectionOptionFromFile (0 ms) 41: [ RUN ] SelectionFileOptionTest.HandlesTwoSeparateSelectionOptions 41: [ OK ] SelectionFileOptionTest.HandlesTwoSeparateSelectionOptions (0 ms) 41: [ RUN ] SelectionFileOptionTest.HandlesTwoSelectionOptionsFromSingleFile -41: [ OK ] SelectionFileOptionTest.HandlesTwoSelectionOptionsFromSingleFile (0 ms) +41: [ OK ] SelectionFileOptionTest.HandlesTwoSelectionOptionsFromSingleFile (1 ms) 41: [ RUN ] SelectionFileOptionTest.HandlesRequiredOptionFromFile 41: [ OK ] SelectionFileOptionTest.HandlesRequiredOptionFromFile (0 ms) 41: [ RUN ] SelectionFileOptionTest.HandlesRequiredOptionFromFileWithOtherOptionSet @@ -24876,15 +24911,15 @@ 41: [ RUN ] SelectionFileOptionTest.GivesErrorWithNoFile 41: [ OK ] SelectionFileOptionTest.GivesErrorWithNoFile (0 ms) 41: [ RUN ] SelectionFileOptionTest.GivesErrorWithNonExistentFile -41: [ OK ] SelectionFileOptionTest.GivesErrorWithNonExistentFile (0 ms) +41: [ OK ] SelectionFileOptionTest.GivesErrorWithNonExistentFile (1 ms) 41: [ RUN ] SelectionFileOptionTest.GivesErrorWithMultipleFiles -41: [ OK ] SelectionFileOptionTest.GivesErrorWithMultipleFiles (1 ms) -41: [----------] 9 tests from SelectionFileOptionTest (3 ms total) +41: [ OK ] SelectionFileOptionTest.GivesErrorWithMultipleFiles (0 ms) +41: [----------] 9 tests from SelectionFileOptionTest (2 ms total) 41: 41: [----------] Global test environment tear-down -41: [==========] 192 tests from 11 test cases ran. (191 ms total) +41: [==========] 192 tests from 11 test cases ran. (159 ms total) 41: [ PASSED ] 192 tests. -41/54 Test #41: SelectionUnitTests .................. Passed 0.21 sec +41/54 Test #41: SelectionUnitTests .................. Passed 0.18 sec test 42 Start 42: MdrunOutputTests @@ -24899,7 +24934,7 @@ 42: 42: [----------] 3 tests from WithDifferentOutputGroupSettings/MdrunCompressedXOutput 42: [ RUN ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/0 -42: Setting the LD random seed to -771754499 +42: Setting the LD random seed to -84354089 42: Generated 3 of the 3 non-bonded parameter combinations 42: Generating 1-4 interactions: fudge = 0.5 42: Generated 3 of the 3 1-4 parameter combinations @@ -24944,9 +24979,9 @@ 42: Writing final coordinates. 42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.022 0.011 199.0 +42: Time: 0.005 0.002 195.9 42: (ns/day) (hour/ns) -42: Performance: 15.828 1.516 +42: Performance: 70.088 0.342 42: Reading frame 0 time 0.000 42: # Atoms 6 42: Reading frame 1 time 0.001 Last frame 1 time 0.001 @@ -24961,9 +24996,9 @@ 42: Forces 0 42: Box 2 0.001 42: Checking file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_0.xtc -42: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/0 (161 ms) +42: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/0 (78 ms) 42: [ RUN ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/1 -42: Setting the LD random seed to 1879038963 +42: Setting the LD random seed to -653295761 42: Generated 3 of the 3 non-bonded parameter combinations 42: Generating 1-4 interactions: fudge = 0.5 42: Generated 3 of the 3 1-4 parameter combinations @@ -25008,9 +25043,9 @@ 42: Writing final coordinates. 42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.019 0.009 198.8 +42: Time: 0.003 0.001 191.1 42: (ns/day) (hour/ns) -42: Performance: 18.559 1.293 +42: Performance: 129.818 0.185 42: Reading frame 0 time 0.000 42: # Atoms 6 42: Reading frame 1 time 0.001 Last frame 1 time 0.001 @@ -25025,9 +25060,9 @@ 42: Forces 0 42: Box 2 0.001 42: Checking file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_1.xtc -42: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/1 (24 ms) +42: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/1 (7 ms) 42: [ RUN ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/2 -42: Setting the LD random seed to 1876406158 +42: Setting the LD random seed to -218503223 42: Generated 3 of the 3 non-bonded parameter combinations 42: Generating 1-4 interactions: fudge = 0.5 42: Generated 3 of the 3 1-4 parameter combinations @@ -25072,9 +25107,9 @@ 42: Writing final coordinates. 42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.002 0.001 189.2 +42: Time: 0.002 0.001 187.6 42: (ns/day) (hour/ns) -42: Performance: 177.990 0.135 +42: Performance: 143.321 0.167 42: Reading frame 0 time 0.000 42: # Atoms 3 42: Reading frame 1 time 0.001 Last frame 1 time 0.001 @@ -25089,8 +25124,8 @@ 42: Forces 0 42: Box 2 0.001 42: Checking file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_2.xtc -42: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/2 (22 ms) -42: [----------] 3 tests from WithDifferentOutputGroupSettings/MdrunCompressedXOutput (207 ms total) +42: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/2 (7 ms) +42: [----------] 3 tests from WithDifferentOutputGroupSettings/MdrunCompressedXOutput (92 ms total) 42: 42: [----------] 2 tests from Argon12/OutputFiles 42: [ RUN ] Argon12/OutputFiles.FilesArePresent/0 @@ -25140,10 +25175,10 @@ 42: Writing final coordinates. 42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.002 0.001 193.0 +42: Time: 0.004 0.002 195.5 42: (ns/day) (hour/ns) -42: Performance: 1146.584 0.021 -42: [ OK ] Argon12/OutputFiles.FilesArePresent/0 (15 ms) +42: Performance: 786.492 0.031 +42: [ OK ] Argon12/OutputFiles.FilesArePresent/0 (7 ms) 42: [ RUN ] Argon12/OutputFiles.FilesArePresent/1 42: 42: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/Argon12_OutputFiles_FilesArePresent_1_input.mdp]: @@ -25191,15 +25226,15 @@ 42: Writing final coordinates. 42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.019 0.010 199.0 +42: Time: 0.004 0.002 196.7 42: (ns/day) (hour/ns) -42: Performance: 151.608 0.158 -42: [ OK ] Argon12/OutputFiles.FilesArePresent/1 (23 ms) -42: [----------] 2 tests from Argon12/OutputFiles (38 ms total) +42: Performance: 740.456 0.032 +42: [ OK ] Argon12/OutputFiles.FilesArePresent/1 (8 ms) +42: [----------] 2 tests from Argon12/OutputFiles (15 ms total) 42: 42: [----------] 3 tests from MdrunCanWrite/Trajectories 42: [ RUN ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/0 -42: Setting the LD random seed to 501179631 +42: Setting the LD random seed to -558104771 42: Generated 8 of the 10 non-bonded parameter combinations 42: Excluding 2 bonded neighbours molecule type 'Methanol' 42: Excluding 2 bonded neighbours molecule type 'SOL' @@ -25239,12 +25274,12 @@ 42: Writing final coordinates. 42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.012 0.006 197.9 +42: Time: 0.015 0.008 197.9 42: (ns/day) (hour/ns) -42: Performance: 100.691 0.238 -42: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/0 (21 ms) +42: Performance: 79.902 0.300 +42: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/0 (14 ms) 42: [ RUN ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/1 -42: Setting the LD random seed to 534559166 +42: Setting the LD random seed to -3074 42: Generated 8 of the 10 non-bonded parameter combinations 42: Excluding 2 bonded neighbours molecule type 'Methanol' 42: Excluding 2 bonded neighbours molecule type 'SOL' @@ -25284,12 +25319,12 @@ 42: Writing final coordinates. 42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.009 0.005 196.7 +42: Time: 0.013 0.007 197.8 42: (ns/day) (hour/ns) -42: Performance: 126.842 0.189 -42: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/1 (23 ms) +42: Performance: 90.249 0.266 +42: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/1 (13 ms) 42: [ RUN ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/2 -42: Setting the LD random seed to -1912810473 +42: Setting the LD random seed to 2012214863 42: Generated 8 of the 10 non-bonded parameter combinations 42: Excluding 2 bonded neighbours molecule type 'Methanol' 42: Excluding 2 bonded neighbours molecule type 'SOL' @@ -25329,15 +25364,15 @@ 42: Writing final coordinates. 42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.005 0.003 194.9 +42: Time: 0.005 0.003 193.9 42: (ns/day) (hour/ns) -42: Performance: 226.877 0.106 -42: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/2 (27 ms) -42: [----------] 3 tests from MdrunCanWrite/Trajectories (71 ms total) +42: Performance: 218.852 0.110 +42: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/2 (10 ms) +42: [----------] 3 tests from MdrunCanWrite/Trajectories (38 ms total) 42: 42: [----------] 3 tests from MdrunCanWrite/NptTrajectories 42: [ RUN ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/0 -42: Setting the LD random seed to -538241546 +42: Setting the LD random seed to -1678233617 42: Generated 8 of the 10 non-bonded parameter combinations 42: Excluding 2 bonded neighbours molecule type 'Methanol' 42: Excluding 2 bonded neighbours molecule type 'SOL' @@ -25377,12 +25412,12 @@ 42: Writing final coordinates. 42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.002 0.001 191.1 +42: Time: 0.003 0.001 192.4 42: (ns/day) (hour/ns) -42: Performance: 217.085 0.111 -42: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/0 (11 ms) +42: Performance: 186.958 0.128 +42: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/0 (9 ms) 42: [ RUN ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/1 -42: Setting the LD random seed to -289769161 +42: Setting the LD random seed to -169487363 42: Generated 8 of the 10 non-bonded parameter combinations 42: Excluding 2 bonded neighbours molecule type 'Methanol' 42: Excluding 2 bonded neighbours molecule type 'SOL' @@ -25422,12 +25457,12 @@ 42: Writing final coordinates. 42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.002 0.001 190.7 +42: Time: 0.002 0.001 191.3 42: (ns/day) (hour/ns) -42: Performance: 211.264 0.114 -42: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/1 (16 ms) +42: Performance: 199.553 0.120 +42: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/1 (7 ms) 42: [ RUN ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/2 -42: Setting the LD random seed to -559977657 +42: Setting the LD random seed to -72553473 42: Generated 8 of the 10 non-bonded parameter combinations 42: Excluding 2 bonded neighbours molecule type 'Methanol' 42: Excluding 2 bonded neighbours molecule type 'SOL' @@ -25467,16 +25502,16 @@ 42: Writing final coordinates. 42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.002 0.001 191.1 +42: Time: 0.003 0.001 192.0 42: (ns/day) (hour/ns) -42: Performance: 202.451 0.119 -42: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/2 (20 ms) -42: [----------] 3 tests from MdrunCanWrite/NptTrajectories (47 ms total) +42: Performance: 193.239 0.124 +42: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/2 (7 ms) +42: [----------] 3 tests from MdrunCanWrite/NptTrajectories (24 ms total) 42: 42: [----------] Global test environment tear-down -42: [==========] 12 tests from 5 test cases ran. (365 ms total) +42: [==========] 12 tests from 5 test cases ran. (171 ms total) 42: [ PASSED ] 12 tests. -42/54 Test #42: MdrunOutputTests .................... Passed 0.38 sec +42/54 Test #42: MdrunOutputTests .................... Passed 0.19 sec test 43 Start 43: MdrunModulesTests @@ -25486,7 +25521,7 @@ 43: [----------] Global test environment set-up. 43: [----------] 4 tests from DensityFittingTest 43: [ RUN ] DensityFittingTest.EnergyMinimizationEnergyCorrectInnerProduct -43: Setting the LD random seed to 1729609718 +43: Setting the LD random seed to 1879034878 43: Generated 1 of the 1 non-bonded parameter combinations 43: Excluding 1 bonded neighbours molecule type 'Argon' 43: Number of degrees of freedom in T-Coupling group rest is 33.00 @@ -25520,9 +25555,9 @@ 43: Norm of force = 1.0754448e+03 43: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/DensityFittingTest_EnergyMinimizationEnergyCorrectInnerProduct.edr as single precision energy file 43: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Last energy frame read 2 time 2.000 This run will generate roughly 0 Mb of data -43: [ OK ] DensityFittingTest.EnergyMinimizationEnergyCorrectInnerProduct (172 ms) +43: [ OK ] DensityFittingTest.EnergyMinimizationEnergyCorrectInnerProduct (76 ms) 43: [ RUN ] DensityFittingTest.EnergyMinimizationEnergyCorrectForRelativeEntropy -43: Setting the LD random seed to 534707582 +43: Setting the LD random seed to -1347166220 43: Generated 1 of the 1 non-bonded parameter combinations 43: Excluding 1 bonded neighbours molecule type 'Argon' 43: Number of degrees of freedom in T-Coupling group rest is 33.00 @@ -25556,17 +25591,17 @@ 43: Norm of force = 1.2549793e+03 43: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/DensityFittingTest_EnergyMinimizationEnergyCorrectForRelativeEntropy.edr as single precision energy file 43: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Last energy frame read 2 time 2.000 This run will generate roughly 0 Mb of data -43: [ OK ] DensityFittingTest.EnergyMinimizationEnergyCorrectForRelativeEntropy (44 ms) +43: [ OK ] DensityFittingTest.EnergyMinimizationEnergyCorrectForRelativeEntropy (7 ms) 43: [ RUN ] DensityFittingTest.GromppErrorWhenEnergyEvaluationFrequencyMismatch 43: 43: [WARNING] /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/src/gtest-death-test.cc:836:: Death tests use fork(), which is unsafe particularly in a threaded context. For this test, Google Test detected 2 threads. -43: [ OK ] DensityFittingTest.GromppErrorWhenEnergyEvaluationFrequencyMismatch (8 ms) +43: [ OK ] DensityFittingTest.GromppErrorWhenEnergyEvaluationFrequencyMismatch (6 ms) 43: [ RUN ] DensityFittingTest.CheckpointWorks 43: 43: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/DensityFittingTest_CheckpointWorks_input.mdp]: 43: Setting nstcalcenergy (100) equal to nstenergy (2) 43: -43: Setting the LD random seed to 2113076839 +43: Setting the LD random seed to 534247351 43: Generated 1 of the 1 non-bonded parameter combinations 43: Excluding 1 bonded neighbours molecule type 'Argon' 43: Number of degrees of freedom in T-Coupling group rest is 33.00 @@ -25603,9 +25638,9 @@ 43: Writing final coordinates. 43: 43: Core t (s) Wall t (s) (%) -43: Time: 0.044 0.022 199.4 +43: Time: 0.005 0.002 196.5 43: (ns/day) (hour/ns) -43: Performance: 11.653 2.059 +43: Performance: 106.574 0.225 43: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 43: log). 43: The current CPU can measure timings more accurately than the code in @@ -25629,12 +25664,12 @@ 43: Writing final coordinates. 43: 43: Core t (s) Wall t (s) (%) -43: Time: 0.002 0.001 189.9 +43: Time: 0.002 0.001 190.4 43: (ns/day) (hour/ns) -43: Performance: 498.333 0.048 +43: Performance: 407.177 0.059 43: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/DensityFittingTest_CheckpointWorks.edr as single precision energy file -43: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.002 Last energy frame read 1 time 0.002 [ OK ] DensityFittingTest.CheckpointWorks (35 ms) -43: [----------] 4 tests from DensityFittingTest (259 ms total) +43: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.002 Last energy frame read 1 time 0.002 [ OK ] DensityFittingTest.CheckpointWorks (12 ms) +43: [----------] 4 tests from DensityFittingTest (101 ms total) 43: 43: [----------] 4 tests from MimicTest 43: [ RUN ] MimicTest.OneQuantumMol @@ -25643,7 +25678,7 @@ 43: For a correct single-point energy evaluation with nsteps = 0, use 43: continuation = yes to avoid constraining the input coordinates. 43: -43: Setting the LD random seed to -570431781 +43: Setting the LD random seed to -503365653 43: Generated 10 of the 10 non-bonded parameter combinations 43: Generating 1-4 interactions: fudge = 0.5 43: Generated 10 of the 10 1-4 parameter combinations @@ -25682,23 +25717,23 @@ 43: Reading frames from gro file 'Generated by gmx solvate', 12 atoms. 43: Reading frame 0 time 0.000 Last frame 0 time 0.000 43: -43: NOTE: 23 % of the run time was spent in pair search, +43: NOTE: 27 % of the run time was spent in pair search, 43: you might want to increase nstlist (this has no effect on accuracy) 43: 43: Core t (s) Wall t (s) (%) -43: Time: 0.000 0.000 187.0 +43: Time: 0.000 0.000 188.3 43: (ns/day) (hour/ns) -43: Performance: 351.151 0.068 +43: Performance: 330.948 0.073 43: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_OneQuantumMol.edr as single precision energy file 43: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -43: [ OK ] MimicTest.OneQuantumMol (13 ms) +43: [ OK ] MimicTest.OneQuantumMol (5 ms) 43: [ RUN ] MimicTest.AllQuantumMol 43: 43: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_AllQuantumMol_input.mdp]: 43: For a correct single-point energy evaluation with nsteps = 0, use 43: continuation = yes to avoid constraining the input coordinates. 43: -43: Setting the LD random seed to 1203765134 +43: Setting the LD random seed to -218276237 43: Generated 10 of the 10 non-bonded parameter combinations 43: Generating 1-4 interactions: fudge = 0.5 43: Generated 10 of the 10 1-4 parameter combinations @@ -25737,23 +25772,23 @@ 43: Reading frames from gro file 'Generated by gmx solvate', 12 atoms. 43: Reading frame 0 time 0.000 Last frame 0 time 0.000 43: -43: NOTE: 21 % of the run time was spent in pair search, +43: NOTE: 28 % of the run time was spent in pair search, 43: you might want to increase nstlist (this has no effect on accuracy) 43: 43: Core t (s) Wall t (s) (%) -43: Time: 0.000 0.000 186.8 +43: Time: 0.000 0.000 187.5 43: (ns/day) (hour/ns) -43: Performance: 391.348 0.061 +43: Performance: 397.355 0.060 43: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_AllQuantumMol.edr as single precision energy file 43: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -43: [ OK ] MimicTest.AllQuantumMol (10 ms) +43: [ OK ] MimicTest.AllQuantumMol (6 ms) 43: [ RUN ] MimicTest.TwoQuantumMol 43: 43: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_TwoQuantumMol_input.mdp]: 43: For a correct single-point energy evaluation with nsteps = 0, use 43: continuation = yes to avoid constraining the input coordinates. 43: -43: Setting the LD random seed to 2145384668 +43: Setting the LD random seed to 1463186934 43: Generated 10 of the 10 non-bonded parameter combinations 43: Generating 1-4 interactions: fudge = 0.5 43: Generated 10 of the 10 1-4 parameter combinations @@ -25792,23 +25827,23 @@ 43: Reading frames from gro file 'Generated by gmx solvate', 12 atoms. 43: Reading frame 0 time 0.000 Last frame 0 time 0.000 43: -43: NOTE: 98 % of the run time was spent in pair search, +43: NOTE: 17 % of the run time was spent in pair search, 43: you might want to increase nstlist (this has no effect on accuracy) 43: 43: Core t (s) Wall t (s) (%) -43: Time: 0.025 0.012 199.7 +43: Time: 0.000 0.000 175.0 43: (ns/day) (hour/ns) -43: Performance: 7.015 3.421 +43: Performance: 365.310 0.066 43: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_TwoQuantumMol.edr as single precision energy file 43: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -43: [ OK ] MimicTest.TwoQuantumMol (22 ms) +43: [ OK ] MimicTest.TwoQuantumMol (5 ms) 43: [ RUN ] MimicTest.BondCuts 43: 43: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_BondCuts_input.mdp]: 43: For a correct single-point energy evaluation with nsteps = 0, use 43: continuation = yes to avoid constraining the input coordinates. 43: -43: Setting the LD random seed to -39124999 +43: Setting the LD random seed to 2041801689 43: Generated 2211 of the 2211 non-bonded parameter combinations 43: Generating 1-4 interactions: fudge = 0.5 43: Generated 2211 of the 2211 1-4 parameter combinations @@ -25851,21 +25886,21 @@ 43: you might want to increase nstlist (this has no effect on accuracy) 43: 43: Core t (s) Wall t (s) (%) -43: Time: 0.001 0.000 191.2 +43: Time: 0.001 0.000 186.3 43: (ns/day) (hour/ns) -43: Performance: 194.727 0.123 +43: Performance: 181.194 0.132 43: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_BondCuts.edr as single precision energy file 43: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 300.368 K 43: Calculated rlist for 1x1 atom pair-list as 1.034 nm, buffer size 0.034 nm 43: Set rlist, assuming 4x4 atom pair-list, to 1.025 nm, buffer size 0.025 nm 43: Note that mdrun will redetermine rlist based on the actual pair-list setup 43: This run will generate roughly 0 Mb of data -43: [ OK ] MimicTest.BondCuts (49 ms) -43: [----------] 4 tests from MimicTest (94 ms total) +43: [ OK ] MimicTest.BondCuts (17 ms) +43: [----------] 4 tests from MimicTest (33 ms total) 43: 43: [----------] 2 tests from WithIntegrator/ImdTest 43: [ RUN ] WithIntegrator/ImdTest.ImdCanRun/0 -43: Setting the LD random seed to 2012921647 +43: Setting the LD random seed to 2013069303 43: Generated 20503 of the 20503 non-bonded parameter combinations 43: Generating 1-4 interactions: fudge = 1 43: Generated 17396 of the 20503 1-4 parameter combinations @@ -25907,7 +25942,7 @@ 43: IMD: Pulling from IMD remote is enabled (-imdpull). 43: IMD: Setting port for connection requests to 0. 43: IMD: Setting up incoming socket. -43: IMD: Listening for IMD connection on port 43175. +43: IMD: Listening for IMD connection on port 60913. 43: IMD: -imdwait not set, starting simulation. 43: starting mdrun 'Glycine' 43: 2 steps, 0.0 ps. @@ -25920,17 +25955,17 @@ 43: Writing final coordinates. 43: 43: Core t (s) Wall t (s) (%) -43: Time: 0.003 0.001 190.2 +43: Time: 0.003 0.001 185.6 43: (ns/day) (hour/ns) -43: Performance: 377.684 0.064 -43: [ OK ] WithIntegrator/ImdTest.ImdCanRun/0 (337 ms) +43: Performance: 362.630 0.066 +43: [ OK ] WithIntegrator/ImdTest.ImdCanRun/0 (142 ms) 43: [ RUN ] WithIntegrator/ImdTest.ImdCanRun/1 43: 43: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithIntegrator_ImdTest_ImdCanRun_1_input.mdp]: 43: Setting tcoupl from 'V-rescale' to 'no'. Temperature coupling does not 43: apply to steep. 43: -43: Setting the LD random seed to -1090552110 +43: Setting the LD random seed to -73416707 43: Generated 20503 of the 20503 non-bonded parameter combinations 43: Generating 1-4 interactions: fudge = 1 43: Generated 17396 of the 20503 1-4 parameter combinations @@ -25963,7 +25998,7 @@ 43: IMD: Pulling from IMD remote is enabled (-imdpull). 43: IMD: Setting port for connection requests to 0. 43: IMD: Setting up incoming socket. -43: IMD: Listening for IMD connection on port 57805. +43: IMD: Listening for IMD connection on port 42641. 43: IMD: -imdwait not set, starting simulation. 43: 43: Steepest Descents: @@ -25980,13 +26015,13 @@ 43: Maximum force = 1.7794877e+04 on atom 9 43: Norm of force = 7.8732901e+03 43: This run will generate roughly 0 Mb of data -43: [ OK ] WithIntegrator/ImdTest.ImdCanRun/1 (247 ms) -43: [----------] 2 tests from WithIntegrator/ImdTest (584 ms total) +43: [ OK ] WithIntegrator/ImdTest.ImdCanRun/1 (136 ms) +43: [----------] 2 tests from WithIntegrator/ImdTest (278 ms total) 43: 43: [----------] Global test environment tear-down -43: [==========] 10 tests from 3 test cases ran. (937 ms total) +43: [==========] 10 tests from 3 test cases ran. (412 ms total) 43: [ PASSED ] 10 tests. -43/54 Test #43: MdrunModulesTests ................... Passed 0.95 sec +43/54 Test #43: MdrunModulesTests ................... Passed 0.43 sec test 44 Start 44: MdrunIOTests @@ -26001,7 +26036,7 @@ 44: For a correct single-point energy evaluation with nsteps = 0, use 44: continuation = yes to avoid constraining the input coordinates. 44: -44: Setting the LD random seed to -147465 +44: Setting the LD random seed to -84036637 44: Generated 8 of the 10 non-bonded parameter combinations 44: Excluding 2 bonded neighbours molecule type 'Methanol' 44: Excluding 2 bonded neighbours molecule type 'SOL' @@ -26024,14 +26059,14 @@ 44: Set rlist, assuming 4x4 atom pair-list, to 1.056 nm, buffer size 0.056 nm 44: Note that mdrun will redetermine rlist based on the actual pair-list setup 44: This run will generate roughly 0 Mb of data -44: [ OK ] GromppTest.EmptyMdpFileWorks (5 ms) +44: [ OK ] GromppTest.EmptyMdpFileWorks (4 ms) 44: [ RUN ] GromppTest.SimulatedAnnealingWorks 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/GromppTest_SimulatedAnnealingWorks_input.mdp]: 44: For a correct single-point energy evaluation with nsteps = 0, use 44: continuation = yes to avoid constraining the input coordinates. 44: -44: Setting the LD random seed to -268845587 +44: Setting the LD random seed to -4392041 44: Generated 8 of the 10 non-bonded parameter combinations 44: Excluding 2 bonded neighbours molecule type 'Methanol' 44: Excluding 2 bonded neighbours molecule type 'SOL' @@ -26067,7 +26102,7 @@ 44: For a correct single-point energy evaluation with nsteps = 0, use 44: continuation = yes to avoid constraining the input coordinates. 44: -44: Setting the LD random seed to 1952129023 +44: Setting the LD random seed to -402660389 44: Generated 8 of the 10 non-bonded parameter combinations 44: Excluding 2 bonded neighbours molecule type 'Methanol' 44: Excluding 2 bonded neighbours molecule type 'SOL' @@ -26102,12 +26137,12 @@ 44: Set rlist, assuming 4x4 atom pair-list, to 1.056 nm, buffer size 0.056 nm 44: Note that mdrun will redetermine rlist based on the actual pair-list setup 44: This run will generate roughly 0 Mb of data -44: [ OK ] GromppTest.SimulatedAnnealingWorksWithMultipleGroups (6 ms) -44: [----------] 3 tests from GromppTest (15 ms total) +44: [ OK ] GromppTest.SimulatedAnnealingWorksWithMultipleGroups (3 ms) +44: [----------] 3 tests from GromppTest (11 ms total) 44: 44: [----------] 6 tests from MdrunTerminationTest 44: [ RUN ] MdrunTerminationTest.CheckpointRestartAppendsByDefault -44: Setting the LD random seed to -624955395 +44: Setting the LD random seed to -537264305 44: Generated 3 of the 3 non-bonded parameter combinations 44: Generating 1-4 interactions: fudge = 0.5 44: Generated 3 of the 3 1-4 parameter combinations @@ -26148,9 +26183,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.005 0.002 193.3 +44: Time: 0.005 0.003 196.1 44: (ns/day) (hour/ns) -44: Performance: 110.294 0.218 +44: Performance: 97.960 0.245 44: Reading toplogy and stuff from /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartAppendsByDefault.tpr 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartAppendsByDefault.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Setting nsteps to 4 @@ -26177,12 +26212,12 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.001 0.001 185.5 +44: Time: 0.002 0.001 187.5 44: (ns/day) (hour/ns) -44: Performance: 380.660 0.063 -44: [ OK ] MdrunTerminationTest.CheckpointRestartAppendsByDefault (180 ms) +44: Performance: 291.778 0.082 +44: [ OK ] MdrunTerminationTest.CheckpointRestartAppendsByDefault (63 ms) 44: [ RUN ] MdrunTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts -44: Setting the LD random seed to -302516373 +44: Setting the LD random seed to -201365637 44: Generated 3 of the 3 non-bonded parameter combinations 44: Generating 1-4 interactions: fudge = 0.5 44: Generated 3 of the 3 1-4 parameter combinations @@ -26215,20 +26250,20 @@ 44: starting mdrun 'spc2' 44: 100 steps, 0.1 ps. 44: -44: Step 5: Run time exceeded 0.000 hours, will terminate the run within 2 steps +44: Step 3: Run time exceeded 0.000 hours, will terminate the run within 2 steps 44: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 298 K 44: Calculated rlist for 1x1 atom pair-list as 1.026 nm, buffer size 0.026 nm 44: Set rlist, assuming 4x4 atom pair-list, to 1.024 nm, buffer size 0.024 nm 44: Note that mdrun will redetermine rlist based on the actual pair-list setup 44: This run will generate roughly 0 Mb of data 44: -44: NOTE: 14 % of the run time was spent in pair search, +44: NOTE: 16 % of the run time was spent in pair search, 44: you might want to increase nstlist (this has no effect on accuracy) 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 190.2 +44: Time: 0.002 0.001 191.9 44: (ns/day) (hour/ns) -44: Performance: 591.447 0.041 +44: Performance: 385.027 0.062 44: Reading toplogy and stuff from /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_WritesCheckpointAfterMaxhTerminationAndThenRestarts.tpr 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_WritesCheckpointAfterMaxhTerminationAndThenRestarts.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Setting nsteps to 102 @@ -26250,17 +26285,17 @@ 44: Using 2 OpenMP threads 44: 44: starting mdrun 'spc2' -44: 102 steps, 0.1 ps (continuing from step 6, 0.0 ps). +44: 102 steps, 0.1 ps (continuing from step 4, 0.0 ps). 44: 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.030 0.015 199.2 +44: Time: 0.007 0.003 196.6 44: (ns/day) (hour/ns) -44: Performance: 553.107 0.043 -44: [ OK ] MdrunTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts (32 ms) +44: Performance: 2526.329 0.009 +44: [ OK ] MdrunTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts (12 ms) 44: [ RUN ] MdrunTerminationTest.CheckpointRestartWithNoAppendWorksAndCannotLaterAppend -44: Setting the LD random seed to 1384120303 +44: Setting the LD random seed to -38274073 44: Generated 3 of the 3 non-bonded parameter combinations 44: Generating 1-4 interactions: fudge = 0.5 44: Generated 3 of the 3 1-4 parameter combinations @@ -26301,9 +26336,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 188.1 +44: Time: 0.002 0.001 189.8 44: (ns/day) (hour/ns) -44: Performance: 297.283 0.081 +44: Performance: 255.563 0.094 44: Reading toplogy and stuff from /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWithNoAppendWorksAndCannotLaterAppend.tpr 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWithNoAppendWorksAndCannotLaterAppend.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Setting nsteps to 4 @@ -26331,9 +26366,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.034 0.017 199.7 +44: Time: 0.002 0.001 195.6 44: (ns/day) (hour/ns) -44: Performance: 15.256 1.573 +44: Performance: 273.983 0.088 44: Reading toplogy and stuff from /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWithNoAppendWorksAndCannotLaterAppend.tpr 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWithNoAppendWorksAndCannotLaterAppend.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Setting nsteps to 6 @@ -26361,9 +26396,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.025 0.012 199.4 +44: Time: 0.002 0.001 195.8 44: (ns/day) (hour/ns) -44: Performance: 20.936 1.146 +44: Performance: 258.848 0.093 44: Reading toplogy and stuff from /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWithNoAppendWorksAndCannotLaterAppend.tpr 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWithNoAppendWorksAndCannotLaterAppend.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Setting nsteps to 8 @@ -26390,10 +26425,13 @@ 44: 44: Writing final coordinates. 44: +44: NOTE: 17 % of the run time was spent in pair search, +44: you might want to increase nstlist (this has no effect on accuracy) +44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 195.1 +44: Time: 0.002 0.001 195.0 44: (ns/day) (hour/ns) -44: Performance: 309.117 0.078 +44: Performance: 225.881 0.106 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -26413,16 +26451,16 @@ 44: starting mdrun 'spc2' 44: 8 steps, 0.0 ps (continuing from step 8, 0.0 ps). 44: -44: NOTE: 26 % of the run time was spent in pair search, +44: NOTE: 31 % of the run time was spent in pair search, 44: you might want to increase nstlist (this has no effect on accuracy) 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.000 0.000 178.8 +44: Time: 0.000 0.000 169.5 44: (ns/day) (hour/ns) -44: Performance: 511.847 0.047 -44: [ OK ] MdrunTerminationTest.CheckpointRestartWithNoAppendWorksAndCannotLaterAppend (66 ms) +44: Performance: 365.679 0.066 +44: [ OK ] MdrunTerminationTest.CheckpointRestartWithNoAppendWorksAndCannotLaterAppend (23 ms) 44: [ RUN ] MdrunTerminationTest.CheckpointRestartWorksEvenWithMissingCheckpointFile -44: Setting the LD random seed to -37748817 +44: Setting the LD random seed to 524260284 44: Generated 3 of the 3 non-bonded parameter combinations 44: Generating 1-4 interactions: fudge = 0.5 44: Generated 3 of the 3 1-4 parameter combinations @@ -26463,9 +26501,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 187.3 +44: Time: 0.002 0.001 190.6 44: (ns/day) (hour/ns) -44: Performance: 298.262 0.080 +44: Performance: 232.897 0.103 44: Reading toplogy and stuff from /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWorksEvenWithMissingCheckpointFile.tpr 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWorksEvenWithMissingCheckpointFile.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Setting nsteps to 4 @@ -26493,12 +26531,12 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.025 0.013 198.8 +44: Time: 0.002 0.001 190.1 44: (ns/day) (hour/ns) -44: Performance: 34.206 0.702 -44: [ OK ] MdrunTerminationTest.CheckpointRestartWorksEvenWithMissingCheckpointFile (32 ms) +44: Performance: 432.134 0.056 +44: [ OK ] MdrunTerminationTest.CheckpointRestartWorksEvenWithMissingCheckpointFile (11 ms) 44: [ RUN ] MdrunTerminationTest.CheckpointRestartWorksEvenWithAppendAndMissingCheckpointFile -44: Setting the LD random seed to -751304713 +44: Setting the LD random seed to 535814079 44: Generated 3 of the 3 non-bonded parameter combinations 44: Generating 1-4 interactions: fudge = 0.5 44: Generated 3 of the 3 1-4 parameter combinations @@ -26539,17 +26577,17 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 188.2 +44: Time: 0.002 0.001 189.8 44: (ns/day) (hour/ns) -44: Performance: 312.134 0.077 +44: Performance: 249.808 0.096 44: Reading toplogy and stuff from /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWorksEvenWithAppendAndMissingCheckpointFile.tpr 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWorksEvenWithAppendAndMissingCheckpointFile.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Setting nsteps to 4 44: Writing statusfile with starting step 0 and length 4 steps... 44: time 0.000 and length 0.004 ps -44: [ OK ] MdrunTerminationTest.CheckpointRestartWorksEvenWithAppendAndMissingCheckpointFile (18 ms) +44: [ OK ] MdrunTerminationTest.CheckpointRestartWorksEvenWithAppendAndMissingCheckpointFile (8 ms) 44: [ RUN ] MdrunTerminationTest.RunWithNoAppendCreatesPartFiles -44: Setting the LD random seed to 2013265406 +44: Setting the LD random seed to -441352258 44: Generated 3 of the 3 non-bonded parameter combinations 44: Generating 1-4 interactions: fudge = 0.5 44: Generated 3 of the 3 1-4 parameter combinations @@ -26590,9 +26628,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 188.2 +44: Time: 0.002 0.001 191.6 44: (ns/day) (hour/ns) -44: Performance: 304.357 0.079 +44: Performance: 211.552 0.113 44: Reading toplogy and stuff from /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_RunWithNoAppendCreatesPartFiles.tpr 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_RunWithNoAppendCreatesPartFiles.tpr, VERSION 2020.6-Debian-2020.6-2 (single precision) 44: Setting nsteps to 4 @@ -26620,11 +26658,11 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 193.7 +44: Time: 0.002 0.001 196.0 44: (ns/day) (hour/ns) -44: Performance: 334.101 0.072 -44: [ OK ] MdrunTerminationTest.RunWithNoAppendCreatesPartFiles (50 ms) -44: [----------] 6 tests from MdrunTerminationTest (378 ms total) +44: Performance: 249.007 0.096 +44: [ OK ] MdrunTerminationTest.RunWithNoAppendCreatesPartFiles (13 ms) +44: [----------] 6 tests from MdrunTerminationTest (130 ms total) 44: 44: [----------] 12 tests from NormalIntegrators/MdrunNoAppendContinuationIsExact 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/0 @@ -26699,9 +26737,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.001 190.5 +44: Time: 0.003 0.002 194.1 44: (ns/day) (hour/ns) -44: Performance: 1054.174 0.023 +44: Performance: 922.245 0.026 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -26723,9 +26761,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 191.4 +44: Time: 0.002 0.001 193.2 44: (ns/day) (hour/ns) -44: Performance: 751.149 0.032 +44: Performance: 667.791 0.036 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -26747,13 +26785,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 184.2 +44: Time: 0.002 0.001 193.3 44: (ns/day) (hour/ns) -44: Performance: 734.239 0.033 +44: Performance: 646.096 0.037 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_0_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_0_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_0_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (32 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (18 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/1 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_1_input.mdp]: @@ -26826,9 +26864,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.002 195.9 +44: Time: 0.003 0.002 195.7 44: (ns/day) (hour/ns) -44: Performance: 952.620 0.025 +44: Performance: 932.011 0.026 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -26850,9 +26888,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.001 196.8 +44: Time: 0.002 0.001 197.0 44: (ns/day) (hour/ns) -44: Performance: 572.392 0.042 +44: Performance: 628.661 0.038 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -26874,13 +26912,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 196.7 +44: Time: 0.002 0.001 195.7 44: (ns/day) (hour/ns) -44: Performance: 655.444 0.037 +44: Performance: 628.055 0.038 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_1_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_1_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_1_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (33 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (16 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/2 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_2_input.mdp]: @@ -26944,9 +26982,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.001 193.1 +44: Time: 0.003 0.002 194.9 44: (ns/day) (hour/ns) -44: Performance: 1114.434 0.022 +44: Performance: 906.103 0.026 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -26969,9 +27007,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 191.3 +44: Time: 0.002 0.001 193.0 44: (ns/day) (hour/ns) -44: Performance: 747.020 0.032 +44: Performance: 686.919 0.035 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -26994,13 +27032,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.026 0.013 199.0 +44: Time: 0.002 0.001 192.6 44: (ns/day) (hour/ns) -44: Performance: 59.517 0.403 +44: Performance: 673.583 0.036 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_2_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_2_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_2_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (51 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (16 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/3 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_3_input.mdp]: @@ -27064,9 +27102,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.001 192.6 +44: Time: 0.003 0.002 194.7 44: (ns/day) (hour/ns) -44: Performance: 1103.061 0.022 +44: Performance: 973.853 0.025 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -27089,9 +27127,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 191.3 +44: Time: 0.002 0.001 192.5 44: (ns/day) (hour/ns) -44: Performance: 728.336 0.033 +44: Performance: 725.905 0.033 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -27114,13 +27152,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.026 0.013 199.1 +44: Time: 0.002 0.001 193.1 44: (ns/day) (hour/ns) -44: Performance: 59.265 0.405 +44: Performance: 672.750 0.036 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_3_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_3_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_3_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (48 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (16 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/4 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_4_input.mdp]: @@ -27209,9 +27247,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.001 192.0 +44: Time: 0.003 0.002 194.5 44: (ns/day) (hour/ns) -44: Performance: 1066.585 0.023 +44: Performance: 889.103 0.027 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -27233,9 +27271,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 191.8 +44: Time: 0.002 0.001 192.7 44: (ns/day) (hour/ns) -44: Performance: 684.899 0.035 +44: Performance: 635.768 0.038 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -27257,13 +27295,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.026 0.013 198.9 +44: Time: 0.002 0.001 191.1 44: (ns/day) (hour/ns) -44: Performance: 60.245 0.398 +44: Performance: 737.393 0.033 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_4_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_4_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_4_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/4 (48 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/4 (16 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/5 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_5_input.mdp]: @@ -27352,9 +27390,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.002 196.6 +44: Time: 0.003 0.002 196.9 44: (ns/day) (hour/ns) -44: Performance: 826.814 0.029 +44: Performance: 827.147 0.029 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -27376,9 +27414,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.001 196.4 +44: Time: 0.002 0.001 196.8 44: (ns/day) (hour/ns) -44: Performance: 592.030 0.041 +44: Performance: 636.637 0.038 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -27400,13 +27438,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.026 0.013 199.4 +44: Time: 0.003 0.001 195.8 44: (ns/day) (hour/ns) -44: Performance: 59.509 0.403 +44: Performance: 592.783 0.040 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_5_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_5_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_5_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/5 (48 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/5 (16 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/6 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_6_input.mdp]: @@ -27486,9 +27524,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.001 192.3 +44: Time: 0.003 0.001 193.8 44: (ns/day) (hour/ns) -44: Performance: 1004.172 0.024 +44: Performance: 1016.600 0.024 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -27510,13 +27548,10 @@ 44: 44: Writing final coordinates. 44: -44: NOTE: 28 % of the run time was spent in pair search, -44: you might want to increase nstlist (this has no effect on accuracy) -44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.227 0.113 199.9 +44: Time: 0.002 0.001 191.6 44: (ns/day) (hour/ns) -44: Performance: 6.853 3.502 +44: Performance: 705.035 0.034 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -27539,13 +27574,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.016 0.008 198.7 +44: Time: 0.002 0.001 191.0 44: (ns/day) (hour/ns) -44: Performance: 96.468 0.249 +44: Performance: 724.776 0.033 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_6_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_6_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_6_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/6 (204 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/6 (16 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/7 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_7_input.mdp]: @@ -27625,9 +27660,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.001 193.0 +44: Time: 0.003 0.002 193.8 44: (ns/day) (hour/ns) -44: Performance: 986.168 0.024 +44: Performance: 965.913 0.025 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -27650,9 +27685,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 190.2 +44: Time: 0.002 0.001 191.5 44: (ns/day) (hour/ns) -44: Performance: 689.971 0.035 +44: Performance: 736.561 0.033 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -27674,17 +27709,14 @@ 44: 44: Writing final coordinates. 44: -44: NOTE: 79 % of the run time was spent in pair search, -44: you might want to increase nstlist (this has no effect on accuracy) -44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.1 +44: Time: 0.002 0.001 191.2 44: (ns/day) (hour/ns) -44: Performance: 152.023 0.158 +44: Performance: 664.932 0.036 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_7_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_7_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_7_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/7 (33 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/7 (15 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/8 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_8_input.mdp]: @@ -27807,9 +27839,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.014 0.007 197.7 +44: Time: 0.008 0.004 196.5 44: (ns/day) (hour/ns) -44: Performance: 203.239 0.118 +44: Performance: 376.680 0.064 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -27831,9 +27863,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 196.7 +44: Time: 0.005 0.003 195.1 44: (ns/day) (hour/ns) -44: Performance: 150.939 0.159 +44: Performance: 294.412 0.082 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -27855,13 +27887,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.008 0.004 195.5 +44: Time: 0.005 0.002 194.4 44: (ns/day) (hour/ns) -44: Performance: 198.315 0.121 +44: Performance: 332.398 0.072 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_8_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_8_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_8_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/8 (78 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/8 (48 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/9 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_9_input.mdp]: @@ -27984,9 +28016,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.011 0.005 197.0 +44: Time: 0.009 0.004 196.2 44: (ns/day) (hour/ns) -44: Performance: 268.038 0.090 +44: Performance: 332.358 0.072 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -28008,9 +28040,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.004 0.002 193.4 +44: Time: 0.005 0.003 194.9 44: (ns/day) (hour/ns) -44: Performance: 335.717 0.071 +44: Performance: 309.969 0.077 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -28032,13 +28064,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.004 0.003 157.5 +44: Time: 0.005 0.003 195.1 44: (ns/day) (hour/ns) -44: Performance: 282.258 0.085 +44: Performance: 278.522 0.086 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_9_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_9_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_9_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/9 (58 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/9 (49 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/10 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_10_input.mdp]: @@ -28152,9 +28184,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.007 0.004 195.6 +44: Time: 0.008 0.004 196.4 44: (ns/day) (hour/ns) -44: Performance: 410.105 0.059 +44: Performance: 375.417 0.064 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -28177,9 +28209,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.005 0.003 194.3 +44: Time: 0.005 0.003 195.3 44: (ns/day) (hour/ns) -44: Performance: 279.644 0.086 +44: Performance: 279.237 0.086 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -28202,13 +28234,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.005 0.003 194.5 +44: Time: 0.004 0.002 194.3 44: (ns/day) (hour/ns) -44: Performance: 300.876 0.080 +44: Performance: 337.035 0.071 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_10_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_10_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_10_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/10 (85 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/10 (77 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/11 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_11_input.mdp]: @@ -28322,9 +28354,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.009 0.005 196.3 +44: Time: 0.010 0.005 197.2 44: (ns/day) (hour/ns) -44: Performance: 314.750 0.076 +44: Performance: 281.679 0.085 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -28347,9 +28379,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.005 0.003 194.4 +44: Time: 0.006 0.003 195.1 44: (ns/day) (hour/ns) -44: Performance: 299.274 0.080 +44: Performance: 271.519 0.088 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -28372,14 +28404,14 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.006 0.003 195.2 +44: Time: 0.006 0.003 195.7 44: (ns/day) (hour/ns) -44: Performance: 259.322 0.093 +44: Performance: 260.315 0.092 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_11_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_11_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_11_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/11 (92 ms) -44: [----------] 12 tests from NormalIntegrators/MdrunNoAppendContinuationIsExact (810 ms total) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/11 (69 ms) +44: [----------] 12 tests from NormalIntegrators/MdrunNoAppendContinuationIsExact (374 ms total) 44: 44: [----------] 4 tests from NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact 44: [ RUN ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/0 @@ -28476,9 +28508,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.017 0.009 197.6 +44: Time: 0.007 0.004 195.8 44: (ns/day) (hour/ns) -44: Performance: 171.633 0.140 +44: Performance: 418.007 0.057 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -28500,9 +28532,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.004 0.002 193.0 +44: Time: 0.004 0.002 193.6 44: (ns/day) (hour/ns) -44: Performance: 335.752 0.071 +44: Performance: 351.264 0.068 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -28524,13 +28556,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.006 0.003 193.8 +44: Time: 0.004 0.002 193.6 44: (ns/day) (hour/ns) -44: Performance: 272.700 0.088 +44: Performance: 369.867 0.065 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_0_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_0_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_0_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (60 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (44 ms) 44: [ RUN ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/1 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_1_input.mdp]: @@ -28625,9 +28657,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.3 +44: Time: 0.008 0.004 198.1 44: (ns/day) (hour/ns) -44: Performance: 299.888 0.080 +44: Performance: 372.331 0.064 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -28649,9 +28681,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.006 0.003 197.7 +44: Time: 0.005 0.002 197.3 44: (ns/day) (hour/ns) -44: Performance: 242.112 0.099 +44: Performance: 319.191 0.075 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -28672,17 +28704,14 @@ 44: 44: Writing final coordinates. 44: -44: NOTE: 53 % of the run time was spent in pair search, -44: you might want to increase nstlist (this has no effect on accuracy) -44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.010 0.005 198.4 +44: Time: 0.005 0.002 197.1 44: (ns/day) (hour/ns) -44: Performance: 155.591 0.154 +44: Performance: 315.089 0.076 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_1_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_1_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_1_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (57 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (46 ms) 44: [ RUN ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/2 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_2_input.mdp]: @@ -28767,13 +28796,10 @@ 44: 44: Writing final coordinates. 44: -44: NOTE: 15 % of the run time was spent in pair search, -44: you might want to increase nstlist (this has no effect on accuracy) -44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.008 0.005 176.9 +44: Time: 0.007 0.004 195.7 44: (ns/day) (hour/ns) -44: Performance: 325.252 0.074 +44: Performance: 407.204 0.059 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -28796,9 +28822,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.004 0.002 192.7 +44: Time: 0.005 0.002 193.7 44: (ns/day) (hour/ns) -44: Performance: 347.744 0.069 +44: Performance: 329.777 0.073 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -28821,13 +28847,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.005 0.002 192.4 +44: Time: 0.005 0.003 192.7 44: (ns/day) (hour/ns) -44: Performance: 329.743 0.073 +44: Performance: 274.513 0.087 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_2_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_2_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_2_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (95 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (78 ms) 44: [ RUN ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/3 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_3_input.mdp]: @@ -28913,9 +28939,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.008 0.004 196.0 +44: Time: 0.008 0.004 196.2 44: (ns/day) (hour/ns) -44: Performance: 360.121 0.067 +44: Performance: 361.071 0.066 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -28938,9 +28964,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.006 0.003 194.3 +44: Time: 0.005 0.003 194.1 44: (ns/day) (hour/ns) -44: Performance: 265.054 0.091 +44: Performance: 290.582 0.083 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -28963,14 +28989,14 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.005 0.003 193.2 +44: Time: 0.005 0.003 194.6 44: (ns/day) (hour/ns) -44: Performance: 288.372 0.083 +44: Performance: 287.863 0.083 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_3_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_3_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_3_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (76 ms) -44: [----------] 4 tests from NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact (288 ms total) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (68 ms) +44: [----------] 4 tests from NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact (236 ms total) 44: 44: [----------] 6 tests from NVT/MdrunNoAppendContinuationIsExact 44: [ RUN ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/0 @@ -29046,9 +29072,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.001 192.6 +44: Time: 0.003 0.001 193.3 44: (ns/day) (hour/ns) -44: Performance: 1122.353 0.021 +44: Performance: 1049.863 0.023 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -29071,9 +29097,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 190.9 +44: Time: 0.002 0.001 191.8 44: (ns/day) (hour/ns) -44: Performance: 776.361 0.031 +44: Performance: 762.031 0.031 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -29096,13 +29122,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 190.7 +44: Time: 0.002 0.001 191.6 44: (ns/day) (hour/ns) -44: Performance: 615.840 0.039 +44: Performance: 695.562 0.035 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_0_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_0_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_0_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (21 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (16 ms) 44: [ RUN ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/1 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_1_input.mdp]: @@ -29166,9 +29192,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.001 192.7 +44: Time: 0.003 0.001 194.0 44: (ns/day) (hour/ns) -44: Performance: 1113.226 0.022 +44: Performance: 981.299 0.024 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -29191,9 +29217,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 190.4 +44: Time: 0.002 0.001 192.0 44: (ns/day) (hour/ns) -44: Performance: 716.024 0.034 +44: Performance: 758.134 0.032 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -29216,13 +29242,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 191.0 +44: Time: 0.002 0.001 192.5 44: (ns/day) (hour/ns) -44: Performance: 756.726 0.032 +44: Performance: 716.339 0.034 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_1_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_1_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_1_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (20 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (15 ms) 44: [ RUN ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/2 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_2_input.mdp]: @@ -29294,9 +29320,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.001 188.1 +44: Time: 0.003 0.002 193.9 44: (ns/day) (hour/ns) -44: Performance: 1017.439 0.024 +44: Performance: 965.913 0.025 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -29319,9 +29345,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 190.8 +44: Time: 0.002 0.001 191.5 44: (ns/day) (hour/ns) -44: Performance: 781.945 0.031 +44: Performance: 789.134 0.030 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -29344,13 +29370,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 191.2 +44: Time: 0.002 0.001 191.3 44: (ns/day) (hour/ns) -44: Performance: 758.486 0.032 +44: Performance: 727.849 0.033 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_2_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_2_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_2_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (20 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (15 ms) 44: [ RUN ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/3 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_3_input.mdp]: @@ -29424,9 +29450,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.001 193.1 +44: Time: 0.003 0.002 194.3 44: (ns/day) (hour/ns) -44: Performance: 1048.077 0.023 +44: Performance: 974.932 0.025 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -29449,9 +29475,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 191.2 +44: Time: 0.002 0.001 193.1 44: (ns/day) (hour/ns) -44: Performance: 735.730 0.033 +44: Performance: 647.121 0.037 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -29474,13 +29500,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.002 190.3 +44: Time: 0.002 0.001 192.6 44: (ns/day) (hour/ns) -44: Performance: 472.748 0.051 +44: Performance: 692.608 0.035 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_3_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_3_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_3_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (29 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (16 ms) 44: [ RUN ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/4 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_4_input.mdp]: @@ -29544,9 +29570,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.004 0.002 196.2 +44: Time: 0.003 0.002 197.1 44: (ns/day) (hour/ns) -44: Performance: 661.576 0.036 +44: Performance: 828.259 0.029 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -29569,9 +29595,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.001 196.1 +44: Time: 0.002 0.001 196.2 44: (ns/day) (hour/ns) -44: Performance: 606.902 0.040 +44: Performance: 709.946 0.034 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -29594,13 +29620,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 196.4 +44: Time: 0.002 0.001 196.6 44: (ns/day) (hour/ns) -44: Performance: 619.231 0.039 +44: Performance: 672.611 0.036 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_4_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_4_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_4_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/4 (42 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/4 (15 ms) 44: [ RUN ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/5 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_5_input.mdp]: @@ -29664,9 +29690,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.019 0.010 198.9 +44: Time: 0.004 0.002 195.7 44: (ns/day) (hour/ns) -44: Performance: 152.373 0.158 +44: Performance: 719.527 0.033 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -29689,9 +29715,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 192.5 +44: Time: 0.002 0.001 191.4 44: (ns/day) (hour/ns) -44: Performance: 633.176 0.038 +44: Performance: 601.196 0.040 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -29714,14 +29740,14 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 192.0 +44: Time: 0.002 0.001 192.2 44: (ns/day) (hour/ns) -44: Performance: 676.798 0.035 +44: Performance: 653.605 0.037 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_5_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_5_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_5_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/5 (33 ms) -44: [----------] 6 tests from NVT/MdrunNoAppendContinuationIsExact (165 ms total) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/5 (16 ms) +44: [----------] 6 tests from NVT/MdrunNoAppendContinuationIsExact (93 ms total) 44: 44: [----------] 4 tests from NPH/MdrunNoAppendContinuationIsExact 44: [ RUN ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/0 @@ -29796,9 +29822,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.011 0.005 198.1 +44: Time: 0.003 0.001 193.4 44: (ns/day) (hour/ns) -44: Performance: 267.375 0.090 +44: Performance: 999.772 0.024 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -29820,9 +29846,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 189.4 +44: Time: 0.002 0.001 191.0 44: (ns/day) (hour/ns) -44: Performance: 731.276 0.033 +44: Performance: 785.523 0.031 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -29844,13 +29870,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 190.7 +44: Time: 0.002 0.001 191.7 44: (ns/day) (hour/ns) -44: Performance: 700.342 0.034 +44: Performance: 716.024 0.034 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_0_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_0_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_0_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (35 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (15 ms) 44: [ RUN ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/1 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_1_input.mdp]: @@ -29923,9 +29949,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.001 192.0 +44: Time: 0.003 0.001 193.3 44: (ns/day) (hour/ns) -44: Performance: 1023.865 0.023 +44: Performance: 1030.372 0.023 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -29947,9 +29973,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 189.8 +44: Time: 0.002 0.001 191.4 44: (ns/day) (hour/ns) -44: Performance: 793.357 0.030 +44: Performance: 759.723 0.032 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -29971,13 +29997,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 189.1 +44: Time: 0.002 0.001 191.7 44: (ns/day) (hour/ns) -44: Performance: 747.534 0.032 +44: Performance: 715.710 0.034 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_1_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_1_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_1_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (20 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (15 ms) 44: [ RUN ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/2 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_2_input.mdp]: @@ -30050,9 +30076,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.002 193.1 +44: Time: 0.003 0.001 193.9 44: (ns/day) (hour/ns) -44: Performance: 976.787 0.025 +44: Performance: 980.206 0.024 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -30074,9 +30100,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 189.8 +44: Time: 0.003 0.001 193.0 44: (ns/day) (hour/ns) -44: Performance: 701.396 0.034 +44: Performance: 590.743 0.041 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -30098,13 +30124,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 191.0 +44: Time: 0.002 0.001 192.0 44: (ns/day) (hour/ns) -44: Performance: 692.902 0.035 +44: Performance: 690.994 0.035 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_2_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_2_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_2_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (20 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (15 ms) 44: [ RUN ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/3 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_3_input.mdp]: @@ -30177,9 +30203,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.002 197.0 +44: Time: 0.003 0.002 196.6 44: (ns/day) (hour/ns) -44: Performance: 868.913 0.028 +44: Performance: 852.088 0.028 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -30201,9 +30227,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 196.5 +44: Time: 0.002 0.001 196.4 44: (ns/day) (hour/ns) -44: Performance: 668.064 0.036 +44: Performance: 655.049 0.037 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -30225,14 +30251,14 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 196.4 +44: Time: 0.002 0.001 196.6 44: (ns/day) (hour/ns) -44: Performance: 613.754 0.039 +44: Performance: 639.007 0.038 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_3_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_3_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_3_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (20 ms) -44: [----------] 4 tests from NPH/MdrunNoAppendContinuationIsExact (95 ms total) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (17 ms) +44: [----------] 4 tests from NPH/MdrunNoAppendContinuationIsExact (62 ms total) 44: 44: [----------] 12 tests from NPT/MdrunNoAppendContinuationIsExact 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/0 @@ -30308,9 +30334,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.001 192.3 +44: Time: 0.003 0.001 192.4 44: (ns/day) (hour/ns) -44: Performance: 1118.278 0.021 +44: Performance: 1063.088 0.023 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -30333,9 +30359,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 188.0 +44: Time: 0.002 0.001 190.9 44: (ns/day) (hour/ns) -44: Performance: 675.117 0.036 +44: Performance: 727.524 0.033 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -30358,13 +30384,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 189.8 +44: Time: 0.002 0.001 185.9 44: (ns/day) (hour/ns) -44: Performance: 778.399 0.031 +44: Performance: 713.206 0.034 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_0_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_0_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_0_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (20 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (15 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/1 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_1_input.mdp]: @@ -30438,9 +30464,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.001 192.0 +44: Time: 0.003 0.001 193.0 44: (ns/day) (hour/ns) -44: Performance: 1109.417 0.022 +44: Performance: 1046.652 0.023 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -30463,9 +30489,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 190.0 +44: Time: 0.002 0.001 190.8 44: (ns/day) (hour/ns) -44: Performance: 764.352 0.031 +44: Performance: 784.956 0.031 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -30490,11 +30516,11 @@ 44: Core t (s) Wall t (s) (%) 44: Time: 0.002 0.001 190.6 44: (ns/day) (hour/ns) -44: Performance: 738.730 0.032 +44: Performance: 768.133 0.031 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_1_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_1_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_1_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (21 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (15 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/2 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_2_input.mdp]: @@ -30558,9 +30584,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 192.1 +44: Time: 0.003 0.001 193.6 44: (ns/day) (hour/ns) -44: Performance: 1156.051 0.021 +44: Performance: 980.518 0.024 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -30583,9 +30609,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 189.5 +44: Time: 0.002 0.001 191.2 44: (ns/day) (hour/ns) -44: Performance: 771.038 0.031 +44: Performance: 751.149 0.032 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -30608,13 +30634,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 190.3 +44: Time: 0.002 0.001 191.7 44: (ns/day) (hour/ns) -44: Performance: 781.008 0.031 +44: Performance: 721.728 0.033 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_2_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_2_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_2_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (18 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (16 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/3 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_3_input.mdp]: @@ -30678,9 +30704,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 192.0 +44: Time: 0.003 0.002 193.7 44: (ns/day) (hour/ns) -44: Performance: 1147.011 0.021 +44: Performance: 895.826 0.027 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -30703,9 +30729,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 189.6 +44: Time: 0.002 0.001 191.5 44: (ns/day) (hour/ns) -44: Performance: 713.674 0.034 +44: Performance: 631.705 0.038 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -30728,13 +30754,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.005 0.003 196.1 +44: Time: 0.002 0.001 191.2 44: (ns/day) (hour/ns) -44: Performance: 288.067 0.083 +44: Performance: 631.460 0.038 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_3_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_3_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_3_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (21 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (16 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/4 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_4_input.mdp]: @@ -30820,9 +30846,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.001 192.2 +44: Time: 0.003 0.001 193.2 44: (ns/day) (hour/ns) -44: Performance: 1087.483 0.022 +44: Performance: 1016.432 0.024 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -30845,9 +30871,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 189.9 +44: Time: 0.002 0.001 191.2 44: (ns/day) (hour/ns) -44: Performance: 814.965 0.029 +44: Performance: 757.078 0.032 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -30870,13 +30896,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.006 0.003 196.6 +44: Time: 0.002 0.001 191.2 44: (ns/day) (hour/ns) -44: Performance: 259.963 0.092 +44: Performance: 757.253 0.032 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_4_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_4_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_4_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/4 (20 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/4 (16 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/5 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_5_input.mdp]: @@ -30948,9 +30974,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.002 194.1 +44: Time: 0.003 0.001 192.9 44: (ns/day) (hour/ns) -44: Performance: 833.188 0.029 +44: Performance: 1022.845 0.023 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -30973,9 +30999,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 190.3 +44: Time: 0.002 0.001 190.8 44: (ns/day) (hour/ns) -44: Performance: 768.313 0.031 +44: Performance: 746.166 0.032 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -30998,13 +31024,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 190.0 +44: Time: 0.002 0.001 191.1 44: (ns/day) (hour/ns) -44: Performance: 789.134 0.030 +44: Performance: 749.596 0.032 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_5_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_5_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_5_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/5 (17 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/5 (15 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/6 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_6_input.mdp]: @@ -31078,9 +31104,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.001 192.9 +44: Time: 0.003 0.002 193.6 44: (ns/day) (hour/ns) -44: Performance: 1014.925 0.024 +44: Performance: 952.326 0.025 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -31103,9 +31129,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 190.7 +44: Time: 0.002 0.001 191.5 44: (ns/day) (hour/ns) -44: Performance: 727.200 0.033 +44: Performance: 720.135 0.033 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -31128,13 +31154,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.004 0.002 195.2 +44: Time: 0.002 0.001 191.9 44: (ns/day) (hour/ns) -44: Performance: 354.010 0.068 +44: Performance: 680.328 0.035 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_6_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_6_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_6_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/6 (18 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/6 (15 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/7 44: [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/7 (0 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/8 @@ -31200,9 +31226,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.004 0.002 194.9 +44: Time: 0.003 0.002 193.5 44: (ns/day) (hour/ns) -44: Performance: 706.328 0.034 +44: Performance: 922.797 0.026 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -31225,9 +31251,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 153.8 +44: Time: 0.002 0.001 191.7 44: (ns/day) (hour/ns) -44: Performance: 568.006 0.042 +44: Performance: 698.691 0.034 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -31250,9 +31276,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 190.5 +44: Time: 0.002 0.001 192.0 44: (ns/day) (hour/ns) -44: Performance: 755.674 0.032 +44: Performance: 678.629 0.035 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_8_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_8_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_8_full.edr as single precision energy file @@ -31320,9 +31346,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.002 197.0 +44: Time: 0.003 0.002 196.8 44: (ns/day) (hour/ns) -44: Performance: 876.828 0.027 +44: Performance: 898.963 0.027 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -31345,9 +31371,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 195.5 +44: Time: 0.002 0.001 195.2 44: (ns/day) (hour/ns) -44: Performance: 674.001 0.036 +44: Performance: 654.655 0.037 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -31370,18 +31396,18 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.004 0.002 197.5 +44: Time: 0.002 0.001 196.0 44: (ns/day) (hour/ns) -44: Performance: 387.996 0.062 +44: Performance: 614.332 0.039 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_9_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_9_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_9_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/9 (19 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/9 (16 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/10 44: [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/10 (0 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/11 44: [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/11 (0 ms) -44: [----------] 12 tests from NPT/MdrunNoAppendContinuationIsExact (172 ms total) +44: [----------] 12 tests from NPT/MdrunNoAppendContinuationIsExact (141 ms total) 44: 44: [----------] 1 test from MTTK/MdrunNoAppendContinuationIsExact 44: [ RUN ] MTTK/MdrunNoAppendContinuationIsExact.WithinTolerances/0 @@ -31447,9 +31473,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.005 0.002 195.7 +44: Time: 0.004 0.002 194.9 44: (ns/day) (hour/ns) -44: Performance: 592.593 0.040 +44: Performance: 759.161 0.032 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -31472,9 +31498,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.002 193.3 +44: Time: 0.002 0.001 192.8 44: (ns/day) (hour/ns) -44: Performance: 489.199 0.049 +44: Performance: 621.592 0.039 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -31497,18 +31523,18 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 192.0 +44: Time: 0.003 0.001 193.3 44: (ns/day) (hour/ns) -44: Performance: 640.513 0.037 +44: Performance: 563.979 0.043 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MTTK_MdrunNoAppendContinuationIsExact_WithinTolerances_0_secondpart.part0002.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MTTK_MdrunNoAppendContinuationIsExact_WithinTolerances_0_firstpart.edr as single precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MTTK_MdrunNoAppendContinuationIsExact_WithinTolerances_0_full.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] MTTK/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (18 ms) -44: [----------] 1 test from MTTK/MdrunNoAppendContinuationIsExact (18 ms total) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] MTTK/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (17 ms) +44: [----------] 1 test from MTTK/MdrunNoAppendContinuationIsExact (17 ms total) 44: 44: [----------] 3 tests from Checking/InitialConstraintsTest 44: [ RUN ] Checking/InitialConstraintsTest.Works/0 -44: Setting the LD random seed to -1078214793 +44: Setting the LD random seed to -335569153 44: Generated 8 of the 10 non-bonded parameter combinations 44: Excluding 2 bonded neighbours molecule type 'Methanol' 44: Excluding 2 bonded neighbours molecule type 'SOL' @@ -31554,13 +31580,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 188.6 +44: Time: 0.002 0.001 189.3 44: (ns/day) (hour/ns) -44: Performance: 165.550 0.145 +44: Performance: 146.124 0.164 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_0_spc-and-methanol.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/0 (7 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/0 (6 ms) 44: [ RUN ] Checking/InitialConstraintsTest.Works/1 -44: Setting the LD random seed to -1053337 +44: Setting the LD random seed to -194520073 44: Generated 8 of the 10 non-bonded parameter combinations 44: Excluding 2 bonded neighbours molecule type 'Methanol' 44: Excluding 2 bonded neighbours molecule type 'SOL' @@ -31606,18 +31632,18 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 195.3 +44: Time: 0.004 0.002 195.6 44: (ns/day) (hour/ns) -44: Performance: 135.472 0.177 +44: Performance: 92.422 0.260 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_1_spc-and-methanol.edr as single precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/1 (7 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/1 (8 ms) 44: [ RUN ] Checking/InitialConstraintsTest.Works/2 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2_input.mdp]: 44: Integrator method md-vv-avek is implemented primarily for validation 44: purposes; for molecular dynamics, you should probably be using md or md-vv 44: -44: Setting the LD random seed to -11356425 +44: Setting the LD random seed to 1990715374 44: Generated 8 of the 10 non-bonded parameter combinations 44: Excluding 2 bonded neighbours molecule type 'Methanol' 44: Excluding 2 bonded neighbours molecule type 'SOL' @@ -31663,17 +31689,17 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 185.2 +44: Time: 0.002 0.001 190.4 44: (ns/day) (hour/ns) -44: Performance: 202.282 0.119 +44: Performance: 150.681 0.159 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2_spc-and-methanol.edr as single precision energy file 44: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/2 (7 ms) 44: [----------] 3 tests from Checking/InitialConstraintsTest (21 ms total) 44: 44: [----------] Global test environment tear-down -44: [==========] 51 tests from 9 test cases ran. (1962 ms total) +44: [==========] 51 tests from 9 test cases ran. (1085 ms total) 44: [ PASSED ] 51 tests. -44/54 Test #44: MdrunIOTests ........................ Passed 1.98 sec +44/54 Test #44: MdrunIOTests ........................ Passed 1.10 sec test 45 Start 45: MdrunTests @@ -31688,7 +31714,7 @@ 45: The Berendsen thermostat does not generate the correct kinetic energy 45: distribution. You might want to consider using the V-rescale thermostat. 45: -45: Setting the LD random seed to -209731933 +45: Setting the LD random seed to -552110124 45: Generated 2145 of the 2145 non-bonded parameter combinations 45: Generating 1-4 interactions: fudge = 0.5 45: Generated 2145 of the 2145 1-4 parameter combinations @@ -31741,11 +31767,11 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.092 0.046 199.6 +45: Time: 0.039 0.020 199.2 45: (ns/day) (hour/ns) -45: Performance: 755.018 0.032 -45: [ OK ] DispersionCorrectionTest.DispersionCorrectionCanRun (232 ms) -45: [----------] 1 test from DispersionCorrectionTest (232 ms total) +45: Performance: 1755.095 0.014 +45: [ OK ] DispersionCorrectionTest.DispersionCorrectionCanRun (101 ms) +45: [----------] 1 test from DispersionCorrectionTest (102 ms total) 45: 45: [----------] 1 test from OriresTest 45: [ RUN ] OriresTest.OriresCanRun @@ -31754,7 +31780,7 @@ 45: The Berendsen thermostat does not generate the correct kinetic energy 45: distribution. You might want to consider using the V-rescale thermostat. 45: -45: Setting the LD random seed to -543762690 +45: Setting the LD random seed to 964132798 45: Generated 2145 of the 2145 non-bonded parameter combinations 45: Generating 1-4 interactions: fudge = 0.5 45: Generated 2145 of the 2145 1-4 parameter combinations @@ -31800,15 +31826,15 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.025 0.012 198.5 +45: Time: 0.009 0.005 196.9 45: (ns/day) (hour/ns) -45: Performance: 152.206 0.158 -45: [ OK ] OriresTest.OriresCanRun (288 ms) -45: [----------] 1 test from OriresTest (288 ms total) +45: Performance: 402.267 0.060 +45: [ OK ] OriresTest.OriresCanRun (244 ms) +45: [----------] 1 test from OriresTest (244 ms total) 45: 45: [----------] 3 tests from PmeTest 45: [ RUN ] PmeTest.ReproducesEnergies -45: Setting the LD random seed to -25762 +45: Setting the LD random seed to -839001138 45: Generated 8 of the 10 non-bonded parameter combinations 45: Excluding 2 bonded neighbours molecule type 'Methanol' 45: Excluding 2 bonded neighbours molecule type 'SOL' @@ -31856,9 +31882,9 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.059 0.030 199.5 +45: Time: 0.030 0.015 199.0 45: (ns/day) (hour/ns) -45: Performance: 61.476 0.390 +45: Performance: 121.188 0.198 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeAuto.edr as single precision energy file 45: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 45: log). @@ -31881,9 +31907,9 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.058 0.029 199.4 +45: Time: 0.029 0.015 199.1 45: (ns/day) (hour/ns) -45: Performance: 62.090 0.387 +45: Performance: 122.724 0.196 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeOnCpu.edr as single precision energy file 45: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 45: log). @@ -31906,18 +31932,18 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.042 0.021 199.3 +45: Time: 0.031 0.015 199.1 45: (ns/day) (hour/ns) -45: Performance: 86.071 0.279 +45: Performance: 118.282 0.203 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeOnCpuTune.edr as single precision energy file -45: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 [ OK ] PmeTest.ReproducesEnergies (410 ms) +45: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 [ OK ] PmeTest.ReproducesEnergies (221 ms) 45: [ RUN ] PmeTest.ScalesTheBox 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBox_input.mdp]: 45: For a correct single-point energy evaluation with nsteps = 0, use 45: continuation = yes to avoid constraining the input coordinates. 45: -45: Setting the LD random seed to -33624329 +45: Setting the LD random seed to -1632389441 45: Generated 8 of the 10 non-bonded parameter combinations 45: Excluding 2 bonded neighbours molecule type 'Methanol' 45: Excluding 2 bonded neighbours molecule type 'SOL' @@ -31956,9 +31982,9 @@ 45: 0 steps, 0.0 ps. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.002 0.001 184.4 +45: Time: 0.002 0.001 186.8 45: (ns/day) (hour/ns) -45: Performance: 102.254 0.235 +45: Performance: 93.713 0.256 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBox_spc-and-methanol_PmeOnCpu.edr as single precision energy file 45: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 1046.79 K 45: Calculated rlist for 1x1 atom pair-list as 1.000 nm, buffer size 0.000 nm @@ -31967,14 +31993,14 @@ 45: Calculating fourier grid dimensions for X Y Z 45: Using a fourier grid of 28x28x28, spacing 0.108 0.108 0.108 45: This run will generate roughly 0 Mb of data -45: [ OK ] PmeTest.ScalesTheBox (17 ms) +45: [ OK ] PmeTest.ScalesTheBox (13 ms) 45: [ RUN ] PmeTest.ScalesTheBoxWithWalls 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBoxWithWalls_input.mdp]: 45: For a correct single-point energy evaluation with nsteps = 0, use 45: continuation = yes to avoid constraining the input coordinates. 45: -45: Setting the LD random seed to -9052241 +45: Setting the LD random seed to -9516322 45: Generated 8 of the 10 non-bonded parameter combinations 45: Excluding 2 bonded neighbours molecule type 'Methanol' 45: Excluding 2 bonded neighbours molecule type 'SOL' @@ -32014,9 +32040,9 @@ 45: 0 steps, 0.0 ps. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.005 0.002 191.7 +45: Time: 0.006 0.003 193.3 45: (ns/day) (hour/ns) -45: Performance: 36.664 0.655 +45: Performance: 29.804 0.805 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBoxWithWalls_spc-and-methanol_PmeOnCpu.edr as single precision energy file 45: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 966.268 K 45: Calculated rlist for 1x1 atom pair-list as 1.000 nm, buffer size 0.000 nm @@ -32025,8 +32051,8 @@ 45: Calculating fourier grid dimensions for X Y Z 45: Using a fourier grid of 28x28x128, spacing 0.108 0.108 0.118 45: This run will generate roughly 0 Mb of data -45: [ OK ] PmeTest.ScalesTheBoxWithWalls (599 ms) -45: [----------] 3 tests from PmeTest (1027 ms total) +45: [ OK ] PmeTest.ScalesTheBoxWithWalls (556 ms) +45: [----------] 3 tests from PmeTest (790 ms total) 45: 45: [----------] 1 test from CompelTest 45: [ RUN ] CompelTest.SwapCanRun @@ -32035,7 +32061,7 @@ 45: The Berendsen thermostat does not generate the correct kinetic energy 45: distribution. You might want to consider using the V-rescale thermostat. 45: -45: Setting the LD random seed to 402254623 +45: Setting the LD random seed to -335602753 45: Generated 330891 of the 330891 non-bonded parameter combinations 45: Generating 1-4 interactions: fudge = 0.5 45: Generated 330891 of the 330891 1-4 parameter combinations @@ -32101,13 +32127,13 @@ 45: 45: Writing final coordinates. 45: -45: NOTE: 35 % of the run time was spent in pair search, +45: NOTE: 38 % of the run time was spent in pair search, 45: you might want to increase nstlist (this has no effect on accuracy) 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.789 0.394 199.9 +45: Time: 0.300 0.150 199.8 45: (ns/day) (hour/ns) -45: Performance: 3.286 7.304 +45: Performance: 8.626 2.782 45: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 45: log). 45: The current CPU can measure timings more accurately than the code in @@ -32134,15 +32160,15 @@ 45: 45: Writing final coordinates. 45: -45: NOTE: 27 % of the run time was spent in pair search, +45: NOTE: 26 % of the run time was spent in pair search, 45: you might want to increase nstlist (this has no effect on accuracy) 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.401 0.201 199.9 +45: Time: 0.219 0.110 199.8 45: (ns/day) (hour/ns) -45: Performance: 6.464 3.713 -45: [ OK ] CompelTest.SwapCanRun (1514 ms) -45: [----------] 1 test from CompelTest (1514 ms total) +45: Performance: 11.807 2.033 +45: [ OK ] CompelTest.SwapCanRun (1000 ms) +45: [----------] 1 test from CompelTest (1000 ms total) 45: 45: [----------] 6 tests from BondedInteractionsTest 45: [ RUN ] BondedInteractionsTest.NormalBondWorks @@ -32151,7 +32177,7 @@ 45: For a correct single-point energy evaluation with nsteps = 0, use 45: continuation = yes to avoid constraining the input coordinates. 45: -45: Setting the LD random seed to 2137831821 +45: Setting the LD random seed to -134563881 45: Generated 3 of the 3 non-bonded parameter combinations 45: Excluding 3 bonded neighbours molecule type 'butane' 45: @@ -32191,22 +32217,22 @@ 45: Reading frames from gro file 'A single butane', 4 atoms. 45: Reading frame 0 time 0.000 Last frame 0 time 0.000 45: -45: NOTE: 21 % of the run time was spent in pair search, +45: NOTE: 28 % of the run time was spent in pair search, 45: you might want to increase nstlist (this has no effect on accuracy) 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.000 0.000 185.2 +45: Time: 0.001 0.000 189.2 45: (ns/day) (hour/ns) -45: Performance: 377.881 0.064 +45: Performance: 279.189 0.086 45: This run will generate roughly 0 Mb of data -45: [ OK ] BondedInteractionsTest.NormalBondWorks (7 ms) +45: [ OK ] BondedInteractionsTest.NormalBondWorks (6 ms) 45: [ RUN ] BondedInteractionsTest.TabulatedBondWorks 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedBondWorks_input.mdp]: 45: For a correct single-point energy evaluation with nsteps = 0, use 45: continuation = yes to avoid constraining the input coordinates. 45: -45: Setting the LD random seed to -4220969 +45: Setting the LD random seed to 482237679 45: Generated 3 of the 3 non-bonded parameter combinations 45: Excluding 3 bonded neighbours molecule type 'butane' 45: @@ -32246,22 +32272,22 @@ 45: Reading frames from gro file 'A single butane', 4 atoms. 45: Reading frame 0 time 0.000 Last frame 0 time 0.000 45: -45: NOTE: 19 % of the run time was spent in pair search, +45: NOTE: 17 % of the run time was spent in pair search, 45: you might want to increase nstlist (this has no effect on accuracy) 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.000 0.000 183.6 +45: Time: 0.001 0.000 178.7 45: (ns/day) (hour/ns) -45: Performance: 390.925 0.061 +45: Performance: 266.658 0.090 45: This run will generate roughly 0 Mb of data -45: [ OK ] BondedInteractionsTest.TabulatedBondWorks (19 ms) +45: [ OK ] BondedInteractionsTest.TabulatedBondWorks (6 ms) 45: [ RUN ] BondedInteractionsTest.NormalAngleWorks 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalAngleWorks_input.mdp]: 45: For a correct single-point energy evaluation with nsteps = 0, use 45: continuation = yes to avoid constraining the input coordinates. 45: -45: Setting the LD random seed to -1409286822 +45: Setting the LD random seed to -1078073539 45: Generated 3 of the 3 non-bonded parameter combinations 45: Excluding 3 bonded neighbours molecule type 'butane' 45: @@ -32301,22 +32327,22 @@ 45: Reading frames from gro file 'A single butane', 4 atoms. 45: Reading frame 0 time 0.000 Last frame 0 time 0.000 45: -45: NOTE: 14 % of the run time was spent in pair search, +45: NOTE: 23 % of the run time was spent in pair search, 45: you might want to increase nstlist (this has no effect on accuracy) 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.000 0.000 163.6 +45: Time: 0.001 0.000 187.5 45: (ns/day) (hour/ns) -45: Performance: 335.234 0.072 +45: Performance: 310.264 0.077 45: This run will generate roughly 0 Mb of data -45: [ OK ] BondedInteractionsTest.NormalAngleWorks (13 ms) +45: [ OK ] BondedInteractionsTest.NormalAngleWorks (6 ms) 45: [ RUN ] BondedInteractionsTest.TabulatedAngleWorks 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedAngleWorks_input.mdp]: 45: For a correct single-point energy evaluation with nsteps = 0, use 45: continuation = yes to avoid constraining the input coordinates. 45: -45: Setting the LD random seed to -73482945 +45: Setting the LD random seed to -167790257 45: Generated 3 of the 3 non-bonded parameter combinations 45: Excluding 3 bonded neighbours molecule type 'butane' 45: @@ -32356,22 +32382,22 @@ 45: Reading frames from gro file 'A single butane', 4 atoms. 45: Reading frame 0 time 0.000 Last frame 0 time 0.000 45: -45: NOTE: 26 % of the run time was spent in pair search, +45: NOTE: 18 % of the run time was spent in pair search, 45: you might want to increase nstlist (this has no effect on accuracy) 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.000 0.000 185.9 +45: Time: 0.000 0.000 186.0 45: (ns/day) (hour/ns) -45: Performance: 394.328 0.061 +45: Performance: 383.479 0.063 45: This run will generate roughly 0 Mb of data -45: [ OK ] BondedInteractionsTest.TabulatedAngleWorks (10 ms) +45: [ OK ] BondedInteractionsTest.TabulatedAngleWorks (5 ms) 45: [ RUN ] BondedInteractionsTest.NormalDihedralWorks 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalDihedralWorks_input.mdp]: 45: For a correct single-point energy evaluation with nsteps = 0, use 45: continuation = yes to avoid constraining the input coordinates. 45: -45: Setting the LD random seed to -808847441 +45: Setting the LD random seed to -2080506378 45: Generated 3 of the 3 non-bonded parameter combinations 45: Excluding 3 bonded neighbours molecule type 'butane' 45: @@ -32415,18 +32441,18 @@ 45: you might want to increase nstlist (this has no effect on accuracy) 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.000 0.000 184.2 +45: Time: 0.001 0.000 173.4 45: (ns/day) (hour/ns) -45: Performance: 455.261 0.053 +45: Performance: 299.000 0.080 45: This run will generate roughly 0 Mb of data -45: [ OK ] BondedInteractionsTest.NormalDihedralWorks (14 ms) +45: [ OK ] BondedInteractionsTest.NormalDihedralWorks (6 ms) 45: [ RUN ] BondedInteractionsTest.TabulatedDihedralWorks 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedDihedralWorks_input.mdp]: 45: For a correct single-point energy evaluation with nsteps = 0, use 45: continuation = yes to avoid constraining the input coordinates. 45: -45: Setting the LD random seed to 2125798387 +45: Setting the LD random seed to -1146100777 45: Generated 3 of the 3 non-bonded parameter combinations 45: Excluding 3 bonded neighbours molecule type 'butane' 45: @@ -32466,24 +32492,24 @@ 45: Reading frames from gro file 'A single butane', 4 atoms. 45: Reading frame 0 time 0.000 Last frame 0 time 0.000 45: -45: NOTE: 17 % of the run time was spent in pair search, +45: NOTE: 18 % of the run time was spent in pair search, 45: you might want to increase nstlist (this has no effect on accuracy) 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.000 0.000 184.1 +45: Time: 0.000 0.000 185.9 45: (ns/day) (hour/ns) -45: Performance: 400.429 0.060 +45: Performance: 360.227 0.067 45: This run will generate roughly 0 Mb of data -45: [ OK ] BondedInteractionsTest.TabulatedDihedralWorks (17 ms) -45: [----------] 6 tests from BondedInteractionsTest (80 ms total) +45: [ OK ] BondedInteractionsTest.TabulatedDihedralWorks (6 ms) +45: [----------] 6 tests from BondedInteractionsTest (35 ms total) 45: 45: [----------] Global test environment tear-down -45: [==========] 12 tests from 5 test cases ran. (3143 ms total) +45: [==========] 12 tests from 5 test cases ran. (2171 ms total) 45: [ PASSED ] 12 tests. 45: 45: YOU HAVE 12 DISABLED TESTS 45: -45/54 Test #45: MdrunTests .......................... Passed 3.17 sec +45/54 Test #45: MdrunTests .......................... Passed 2.19 sec test 46 Start 46: MdrunNonIntegratorTests @@ -32503,9 +32529,9 @@ 46: 46: Coulomb LJ comb. SIMD Mcycles Mcycles/it. pairs/cycle 46: total useful -46: Ewald all geom. 4xM 18.318 18.3176 0.0650 0.0344 +46: Ewald all geom. 4xM 18.408 18.4081 0.0647 0.0342 46: [ OK ] NonbondedBenchTest.BasicEndToEndTest (26 ms) -46: [----------] 1 test from NonbondedBenchTest (27 ms total) +46: [----------] 1 test from NonbondedBenchTest (26 ms total) 46: 46: [----------] 6 tests from MinimizersWorkWithConstraints/EnergyMinimizationTest 46: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/0 @@ -32563,7 +32589,7 @@ 46: Norm of force = 8.7721828e+01 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_0_minimize.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/0 (643 ms) +46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/0 (610 ms) 46: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_1_input.mdp]: @@ -32622,7 +32648,7 @@ 46: Norm of force = 1.8452307e+02 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_1_minimize.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 (593 ms) +46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 (550 ms) 46: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_2_input.mdp]: @@ -32679,7 +32705,7 @@ 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_2_minimize.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 turning H bonds into constraints... 46: This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 (156 ms) +46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 (137 ms) 46: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_3_input.mdp]: @@ -32743,7 +32769,7 @@ 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_3_minimize.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 turning H bonds into constraints... 46: This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 (155 ms) +46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 (134 ms) 46: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_4_input.mdp]: @@ -32810,7 +32836,7 @@ 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_4_minimize.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 3.000 Last energy frame read 2 time 3.000 turning all bonds into constraints... 46: This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 (22 ms) +46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 (17 ms) 46: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_5_input.mdp]: @@ -32884,8 +32910,8 @@ 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_5_minimize.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 turning all bonds into constraints... 46: This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 (28 ms) -46: [----------] 6 tests from MinimizersWorkWithConstraints/EnergyMinimizationTest (1597 ms total) +46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 (18 ms) +46: [----------] 6 tests from MinimizersWorkWithConstraints/EnergyMinimizationTest (1466 ms total) 46: 46: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest 46: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 @@ -32932,7 +32958,7 @@ 46: Norm of force = 1.6383933e+00 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_0_minimize.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 (13 ms) +46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 (5 ms) 46: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/1 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_1_input.mdp]: @@ -33038,7 +33064,7 @@ 46: Norm of force = 1.0525324e+00 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_2_minimize.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Last energy frame read 1 time 0.000 This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/2 (10 ms) +46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/2 (5 ms) 46: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_3_input.mdp]: @@ -33094,7 +33120,7 @@ 46: Norm of force = 4.6227540e+03 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_3_minimize.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 (153 ms) +46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 (134 ms) 46: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_4_input.mdp]: @@ -33153,7 +33179,7 @@ 46: Norm of force = 3.6139019e+03 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_4_minimize.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 (152 ms) +46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 (133 ms) 46: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_5_input.mdp]: @@ -33222,8 +33248,8 @@ 46: Norm of force = 6.0643635e+03 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_5_minimize.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 (152 ms) -46: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest (486 ms total) +46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 (139 ms) +46: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest (422 ms total) 46: 46: [----------] 12 tests from NormalMdrunIsReproduced/MdrunRerunTest 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/0 @@ -33273,9 +33299,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.018 0.009 198.8 +46: Time: 0.003 0.002 191.0 46: (ns/day) (hour/ns) -46: Performance: 162.275 0.148 +46: Performance: 836.923 0.029 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -33296,18 +33322,18 @@ 46: trr version: GMX_trn_file (single precision) 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 25 % of the run time was spent in pair search, +46: NOTE: 22 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.000 194.4 +46: Time: 0.001 0.001 194.4 46: (ns/day) (hour/ns) -46: Performance: 3071.084 0.008 +46: Performance: 2836.369 0.008 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_0_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_0_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/0 (18 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/0 (11 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/1 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_1_input.mdp]: @@ -33355,9 +33381,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 195.2 +46: Time: 0.004 0.002 195.9 46: (ns/day) (hour/ns) -46: Performance: 950.269 0.025 +46: Performance: 811.886 0.030 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -33377,18 +33403,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 22 % of the run time was spent in pair search, +46: NOTE: 26 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 193.9 +46: Time: 0.001 0.001 194.3 46: (ns/day) (hour/ns) -46: Performance: 2868.060 0.008 +46: Performance: 2554.143 0.009 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_1_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_1_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/1 (19 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/1 (18 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/2 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_2_input.mdp]: @@ -33432,9 +33458,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.001 192.6 +46: Time: 0.003 0.002 193.5 46: (ns/day) (hour/ns) -46: Performance: 1125.428 0.021 +46: Performance: 912.275 0.026 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -33455,18 +33481,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 22 % of the run time was spent in pair search, +46: NOTE: 24 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.000 193.9 +46: Time: 0.001 0.001 190.7 46: (ns/day) (hour/ns) -46: Performance: 2968.961 0.008 +46: Performance: 2868.060 0.008 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_2_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_2_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/2 (16 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/2 (19 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/3 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_3_input.mdp]: @@ -33510,9 +33536,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.001 192.3 +46: Time: 0.003 0.001 192.7 46: (ns/day) (hour/ns) -46: Performance: 1081.375 0.022 +46: Performance: 1047.186 0.023 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -33537,14 +33563,14 @@ 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.000 193.9 +46: Time: 0.001 0.001 194.5 46: (ns/day) (hour/ns) -46: Performance: 3285.650 0.007 +46: Performance: 2721.110 0.009 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_3_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_3_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/3 (16 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/3 (10 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/4 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_4_input.mdp]: @@ -33600,9 +33626,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.006 0.003 196.0 +46: Time: 0.003 0.002 194.0 46: (ns/day) (hour/ns) -46: Performance: 519.574 0.046 +46: Performance: 904.241 0.027 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -33622,18 +33648,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 23 % of the run time was spent in pair search, +46: NOTE: 25 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 194.2 +46: Time: 0.001 0.001 192.8 46: (ns/day) (hour/ns) -46: Performance: 2649.718 0.009 +46: Performance: 2932.220 0.008 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_4_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_4_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/4 (540 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/4 (564 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/5 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_5_input.mdp]: @@ -33689,9 +33715,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.004 0.002 197.1 +46: Time: 0.005 0.002 197.1 46: (ns/day) (hour/ns) -46: Performance: 751.475 0.032 +46: Performance: 634.655 0.038 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -33711,18 +33737,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 23 % of the run time was spent in pair search, +46: NOTE: 24 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 192.3 +46: Time: 0.001 0.001 193.3 46: (ns/day) (hour/ns) -46: Performance: 2207.307 0.011 +46: Performance: 2096.153 0.011 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_5_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_5_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/5 (685 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/5 (596 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/6 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_6_input.mdp]: @@ -33774,9 +33800,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 193.0 +46: Time: 0.004 0.002 192.8 46: (ns/day) (hour/ns) -46: Performance: 971.702 0.025 +46: Performance: 665.722 0.036 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -33797,18 +33823,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 24 % of the run time was spent in pair search, +46: NOTE: 21 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 194.4 +46: Time: 0.001 0.001 193.6 46: (ns/day) (hour/ns) -46: Performance: 2553.085 0.009 +46: Performance: 1944.018 0.012 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_6_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_6_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/6 (655 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/6 (615 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/7 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_7_input.mdp]: @@ -33860,9 +33886,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 193.3 +46: Time: 0.004 0.002 192.6 46: (ns/day) (hour/ns) -46: Performance: 899.488 0.027 +46: Performance: 636.359 0.038 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -33883,18 +33909,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 19 % of the run time was spent in pair search, +46: NOTE: 22 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 194.1 +46: Time: 0.001 0.001 193.5 46: (ns/day) (hour/ns) -46: Performance: 2449.540 0.010 +46: Performance: 2283.393 0.011 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_7_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_7_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/7 (604 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/7 (623 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/8 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_8_input.mdp]: @@ -33967,9 +33993,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.006 0.003 195.4 +46: Time: 0.007 0.004 194.4 46: (ns/day) (hour/ns) -46: Performance: 468.771 0.051 +46: Performance: 391.970 0.061 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -33989,18 +34015,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 18 % of the run time was spent in pair search, +46: NOTE: 16 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 194.6 +46: Time: 0.002 0.001 192.9 46: (ns/day) (hour/ns) -46: Performance: 1696.199 0.014 +46: Performance: 1295.331 0.019 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_8_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_8_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/8 (37 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/8 (35 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/9 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_9_input.mdp]: @@ -34073,9 +34099,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.007 0.003 195.5 +46: Time: 0.008 0.004 195.1 46: (ns/day) (hour/ns) -46: Performance: 435.255 0.055 +46: Performance: 346.451 0.069 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -34095,18 +34121,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 16 % of the run time was spent in pair search, +46: NOTE: 15 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 193.4 +46: Time: 0.003 0.001 194.2 46: (ns/day) (hour/ns) -46: Performance: 1409.424 0.017 +46: Performance: 1067.879 0.022 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_9_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_9_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/9 (40 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/9 (36 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/10 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_10_input.mdp]: @@ -34175,9 +34201,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.006 0.003 194.9 +46: Time: 0.007 0.004 194.5 46: (ns/day) (hour/ns) -46: Performance: 442.127 0.054 +46: Performance: 393.321 0.061 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -34198,18 +34224,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 13 % of the run time was spent in pair search, +46: NOTE: 16 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 195.9 +46: Time: 0.002 0.001 193.8 46: (ns/day) (hour/ns) -46: Performance: 1199.960 0.020 +46: Performance: 1144.241 0.021 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_10_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_10_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/10 (52 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/10 (56 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/11 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_11_input.mdp]: @@ -34278,9 +34304,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.008 0.004 196.7 +46: Time: 0.010 0.005 195.7 46: (ns/day) (hour/ns) -46: Performance: 347.546 0.069 +46: Performance: 295.472 0.081 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -34301,19 +34327,19 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 17 % of the run time was spent in pair search, +46: NOTE: 16 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 194.4 +46: Time: 0.002 0.001 193.3 46: (ns/day) (hour/ns) -46: Performance: 1447.848 0.017 +46: Performance: 1177.034 0.020 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_11_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_11_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/11 (47 ms) -46: [----------] 12 tests from NormalMdrunIsReproduced/MdrunRerunTest (2729 ms total) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/11 (52 ms) +46: [----------] 12 tests from NormalMdrunIsReproduced/MdrunRerunTest (2635 ms total) 46: 46: [----------] 33 tests from MdrunIsReproduced/MdrunRerunFreeEnergyTest 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/0 @@ -34374,9 +34400,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.005 0.003 193.0 +46: Time: 0.007 0.004 193.7 46: (ns/day) (hour/ns) -46: Performance: 534.542 0.045 +46: Performance: 383.622 0.063 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -34396,18 +34422,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 11 % of the run time was spent in pair search, +46: NOTE: 14 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 195.7 +46: Time: 0.003 0.001 193.0 46: (ns/day) (hour/ns) -46: Performance: 932.011 0.026 +46: Performance: 985.695 0.024 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_0_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_0_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/0 (37 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/0 (35 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/1 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_1_input.mdp]: @@ -34466,9 +34492,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.006 0.003 194.9 +46: Time: 0.007 0.004 192.8 46: (ns/day) (hour/ns) -46: Performance: 456.374 0.053 +46: Performance: 377.904 0.064 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -34488,15 +34514,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: +46: NOTE: 14 % of the run time was spent in pair search, +46: you might want to increase nstlist (this has no effect on accuracy) +46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.018 0.009 198.9 +46: Time: 0.003 0.001 193.2 46: (ns/day) (hour/ns) -46: Performance: 159.932 0.150 +46: Performance: 982.551 0.024 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_1_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_1_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/1 (40 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/1 (36 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/2 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_2_input.mdp]: @@ -34555,9 +34584,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.021 0.010 197.8 +46: Time: 0.007 0.004 194.1 46: (ns/day) (hour/ns) -46: Performance: 140.585 0.171 +46: Performance: 382.741 0.063 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -34581,9 +34610,9 @@ 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.001 194.0 +46: Time: 0.003 0.002 193.4 46: (ns/day) (hour/ns) -46: Performance: 1131.838 0.021 +46: Performance: 882.101 0.027 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_2_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_2_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 @@ -34647,9 +34676,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.005 0.003 194.1 +46: Time: 0.007 0.004 193.9 46: (ns/day) (hour/ns) -46: Performance: 541.734 0.044 +46: Performance: 403.286 0.060 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -34673,9 +34702,9 @@ 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.001 195.3 +46: Time: 0.003 0.002 192.5 46: (ns/day) (hour/ns) -46: Performance: 1145.731 0.021 +46: Performance: 900.408 0.027 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_3_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_3_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 @@ -34739,9 +34768,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.006 0.003 193.7 +46: Time: 0.008 0.004 194.4 46: (ns/day) (hour/ns) -46: Performance: 512.103 0.047 +46: Performance: 362.005 0.066 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -34761,18 +34790,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 15 % of the run time was spent in pair search, +46: NOTE: 42 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 194.4 +46: Time: 0.004 0.002 194.8 46: (ns/day) (hour/ns) -46: Performance: 1318.338 0.018 +46: Performance: 702.142 0.034 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_4_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_4_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/4 (33 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/4 (35 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/5 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_5_input.mdp]: @@ -34831,9 +34860,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.005 0.003 193.8 +46: Time: 0.008 0.004 193.3 46: (ns/day) (hour/ns) -46: Performance: 547.560 0.044 +46: Performance: 375.875 0.064 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -34853,18 +34882,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 88 % of the run time was spent in pair search, +46: NOTE: 17 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.019 0.009 198.7 +46: Time: 0.003 0.001 193.3 46: (ns/day) (hour/ns) -46: Performance: 156.894 0.153 +46: Performance: 995.249 0.024 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_5_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_5_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/5 (55 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/5 (36 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/6 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_6_input.mdp]: @@ -34923,9 +34952,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.023 0.012 198.2 +46: Time: 0.007 0.004 193.4 46: (ns/day) (hour/ns) -46: Performance: 127.372 0.188 +46: Performance: 394.026 0.061 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -34945,18 +34974,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 16 % of the run time was spent in pair search, +46: NOTE: 14 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 194.2 +46: Time: 0.003 0.001 192.5 46: (ns/day) (hour/ns) -46: Performance: 1179.287 0.020 +46: Performance: 1013.589 0.024 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_6_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_6_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/6 (40 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/6 (34 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/7 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_7_input.mdp]: @@ -35015,9 +35044,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.007 0.003 194.1 +46: Time: 0.007 0.004 194.1 46: (ns/day) (hour/ns) -46: Performance: 429.669 0.056 +46: Performance: 382.171 0.063 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -35037,15 +35066,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: +46: NOTE: 15 % of the run time was spent in pair search, +46: you might want to increase nstlist (this has no effect on accuracy) +46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.018 0.009 198.8 +46: Time: 0.003 0.002 191.8 46: (ns/day) (hour/ns) -46: Performance: 158.917 0.151 +46: Performance: 960.492 0.025 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_7_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_7_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/7 (41 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/7 (35 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/8 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_8_input.mdp]: @@ -35104,9 +35136,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.023 0.011 198.2 +46: Time: 0.008 0.004 194.1 46: (ns/day) (hour/ns) -46: Performance: 128.969 0.186 +46: Performance: 351.652 0.068 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -35126,18 +35158,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 15 % of the run time was spent in pair search, +46: NOTE: 14 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 194.7 +46: Time: 0.003 0.002 193.2 46: (ns/day) (hour/ns) -46: Performance: 1143.816 0.021 +46: Performance: 970.631 0.025 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_8_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_8_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/8 (39 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/8 (36 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/9 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_9_input.mdp]: @@ -35196,9 +35228,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.007 0.003 194.2 +46: Time: 0.007 0.004 194.2 46: (ns/day) (hour/ns) -46: Performance: 426.486 0.056 +46: Performance: 385.591 0.062 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -35218,15 +35250,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: +46: NOTE: 17 % of the run time was spent in pair search, +46: you might want to increase nstlist (this has no effect on accuracy) +46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.019 0.009 198.6 +46: Time: 0.003 0.001 193.1 46: (ns/day) (hour/ns) -46: Performance: 155.116 0.155 +46: Performance: 994.607 0.024 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_9_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_9_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/9 (41 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/9 (34 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/10 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_10_input.mdp]: @@ -35285,9 +35320,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.022 0.011 197.8 +46: Time: 0.007 0.004 193.9 46: (ns/day) (hour/ns) -46: Performance: 133.842 0.179 +46: Performance: 400.481 0.060 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -35311,14 +35346,14 @@ 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.001 194.1 +46: Time: 0.003 0.002 192.8 46: (ns/day) (hour/ns) -46: Performance: 1092.885 0.022 +46: Performance: 877.953 0.027 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_10_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_10_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/10 (39 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/10 (36 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/11 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_11_input.mdp]: @@ -35377,9 +35412,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.024 0.012 199.0 +46: Time: 0.008 0.004 196.8 46: (ns/day) (hour/ns) -46: Performance: 123.878 0.194 +46: Performance: 341.648 0.070 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -35399,18 +35434,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 15 % of the run time was spent in pair search, +46: NOTE: 14 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 194.0 +46: Time: 0.003 0.002 192.4 46: (ns/day) (hour/ns) -46: Performance: 1259.578 0.019 +46: Performance: 965.459 0.025 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_11_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_11_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/11 (41 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/11 (37 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/12 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_12_input.mdp]: @@ -35469,9 +35504,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.007 0.003 197.7 +46: Time: 0.008 0.004 197.0 46: (ns/day) (hour/ns) -46: Performance: 426.930 0.056 +46: Performance: 360.965 0.066 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -35491,15 +35526,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: +46: NOTE: 14 % of the run time was spent in pair search, +46: you might want to increase nstlist (this has no effect on accuracy) +46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.018 0.009 198.9 +46: Time: 0.003 0.001 192.4 46: (ns/day) (hour/ns) -46: Performance: 158.631 0.151 +46: Performance: 1001.397 0.024 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_12_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_12_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/12 (39 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/12 (36 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/13 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_13_input.mdp]: @@ -35558,9 +35596,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.007 0.003 197.4 +46: Time: 0.009 0.005 197.5 46: (ns/day) (hour/ns) -46: Performance: 433.478 0.055 +46: Performance: 319.765 0.075 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -35580,18 +35618,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 16 % of the run time was spent in pair search, +46: NOTE: 15 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 194.2 +46: Time: 0.003 0.002 191.7 46: (ns/day) (hour/ns) -46: Performance: 1188.157 0.020 +46: Performance: 912.410 0.026 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_13_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_13_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/13 (33 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/13 (36 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/14 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_14_input.mdp]: @@ -35650,9 +35688,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.023 0.012 199.1 +46: Time: 0.009 0.004 195.5 46: (ns/day) (hour/ns) -46: Performance: 127.586 0.188 +46: Performance: 334.052 0.072 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -35672,18 +35710,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 15 % of the run time was spent in pair search, +46: NOTE: 13 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 194.0 +46: Time: 0.003 0.002 193.3 46: (ns/day) (hour/ns) -46: Performance: 1319.185 0.018 +46: Performance: 888.718 0.027 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_14_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_14_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/14 (38 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/14 (35 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/15 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_15_input.mdp]: @@ -35742,9 +35780,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.006 0.003 197.6 +46: Time: 0.009 0.005 197.3 46: (ns/day) (hour/ns) -46: Performance: 470.634 0.051 +46: Performance: 320.014 0.075 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -35768,14 +35806,14 @@ 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.001 193.8 +46: Time: 0.003 0.002 193.1 46: (ns/day) (hour/ns) -46: Performance: 1010.762 0.024 +46: Performance: 977.252 0.025 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_15_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_15_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/15 (33 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/15 (35 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/16 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_16_input.mdp]: @@ -35834,9 +35872,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.007 0.004 197.5 +46: Time: 0.009 0.004 196.9 46: (ns/day) (hour/ns) -46: Performance: 405.409 0.059 +46: Performance: 327.639 0.073 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -35856,15 +35894,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: +46: NOTE: 14 % of the run time was spent in pair search, +46: you might want to increase nstlist (this has no effect on accuracy) +46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.019 0.009 198.5 +46: Time: 0.003 0.002 194.1 46: (ns/day) (hour/ns) -46: Performance: 156.028 0.154 +46: Performance: 905.304 0.027 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_16_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_16_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/16 (40 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/16 (35 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/17 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_17_input.mdp]: @@ -35923,9 +35964,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.023 0.012 199.0 +46: Time: 0.009 0.005 197.2 46: (ns/day) (hour/ns) -46: Performance: 125.310 0.192 +46: Performance: 321.501 0.075 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -35949,14 +35990,14 @@ 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 193.9 +46: Time: 0.003 0.001 192.6 46: (ns/day) (hour/ns) -46: Performance: 1203.241 0.020 +46: Performance: 985.537 0.024 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_17_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_17_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/17 (38 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/17 (36 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/18 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_18_input.mdp]: @@ -36015,9 +36056,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.008 0.004 197.4 +46: Time: 0.009 0.005 197.2 46: (ns/day) (hour/ns) -46: Performance: 369.917 0.065 +46: Performance: 313.245 0.077 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -36037,18 +36078,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 16 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 194.7 +46: Time: 0.003 0.002 192.9 46: (ns/day) (hour/ns) -46: Performance: 1196.697 0.020 +46: Performance: 935.692 0.026 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_18_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_18_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/18 (29 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/18 (36 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/19 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_19_input.mdp]: @@ -36107,9 +36148,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.007 0.003 197.8 +46: Time: 0.009 0.005 197.2 46: (ns/day) (hour/ns) -46: Performance: 421.266 0.057 +46: Performance: 319.748 0.075 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -36129,18 +36170,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 12 % of the run time was spent in pair search, +46: NOTE: 15 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 193.8 +46: Time: 0.003 0.001 192.9 46: (ns/day) (hour/ns) -46: Performance: 915.257 0.026 +46: Performance: 985.065 0.024 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_19_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_19_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/19 (29 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/19 (37 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/20 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_20_input.mdp]: @@ -36199,9 +36240,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.007 0.004 197.4 +46: Time: 0.010 0.005 196.9 46: (ns/day) (hour/ns) -46: Performance: 399.209 0.060 +46: Performance: 302.271 0.079 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -36225,14 +36266,14 @@ 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 192.9 +46: Time: 0.003 0.002 192.9 46: (ns/day) (hour/ns) -46: Performance: 1337.805 0.018 +46: Performance: 960.641 0.025 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_20_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_20_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/20 (29 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/20 (35 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/21 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_21_input.mdp]: @@ -36291,9 +36332,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.007 0.004 197.8 +46: Time: 0.009 0.004 196.4 46: (ns/day) (hour/ns) -46: Performance: 399.028 0.060 +46: Performance: 326.874 0.073 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -36313,18 +36354,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 15 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 190.4 +46: Time: 0.003 0.002 192.3 46: (ns/day) (hour/ns) -46: Performance: 1147.011 0.021 +46: Performance: 919.492 0.026 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_21_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_21_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/21 (30 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/21 (36 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/22 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_22_input.mdp]: @@ -36379,9 +36420,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.006 0.003 194.2 +46: Time: 0.008 0.004 194.2 46: (ns/day) (hour/ns) -46: Performance: 445.290 0.054 +46: Performance: 356.888 0.067 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -36402,18 +36443,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 15 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.001 194.6 +46: Time: 0.003 0.002 191.7 46: (ns/day) (hour/ns) -46: Performance: 1097.363 0.022 +46: Performance: 954.983 0.025 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_22_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_22_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/22 (49 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/22 (51 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/23 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_23_input.mdp]: @@ -36468,9 +36509,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.014 0.007 197.6 +46: Time: 0.008 0.004 194.3 46: (ns/day) (hour/ns) -46: Performance: 204.352 0.117 +46: Performance: 341.383 0.070 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -36491,18 +36532,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 11 % of the run time was spent in pair search, +46: NOTE: 18 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 195.5 +46: Time: 0.003 0.002 193.4 46: (ns/day) (hour/ns) -46: Performance: 871.125 0.028 +46: Performance: 887.566 0.027 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_23_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_23_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/23 (56 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/23 (49 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/24 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_24_input.mdp]: @@ -36557,9 +36598,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.023 0.012 198.2 +46: Time: 0.008 0.004 195.0 46: (ns/day) (hour/ns) -46: Performance: 125.429 0.191 +46: Performance: 337.271 0.071 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -36580,18 +36621,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 12 % of the run time was spent in pair search, +46: NOTE: 13 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 195.2 +46: Time: 0.004 0.002 193.9 46: (ns/day) (hour/ns) -46: Performance: 933.848 0.026 +46: Performance: 758.227 0.032 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_24_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_24_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/24 (64 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/24 (50 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/25 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_25_input.mdp]: @@ -36646,9 +36687,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.022 0.011 197.7 +46: Time: 0.008 0.004 194.4 46: (ns/day) (hour/ns) -46: Performance: 133.087 0.180 +46: Performance: 354.485 0.068 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -36669,18 +36710,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 15 % of the run time was spent in pair search, +46: NOTE: 14 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.001 194.1 +46: Time: 0.003 0.002 191.8 46: (ns/day) (hour/ns) -46: Performance: 1083.086 0.022 +46: Performance: 972.623 0.025 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_25_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_25_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/25 (62 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/25 (51 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/26 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_26_input.mdp]: @@ -36735,9 +36776,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.007 0.003 195.0 +46: Time: 0.008 0.004 194.3 46: (ns/day) (hour/ns) -46: Performance: 430.720 0.056 +46: Performance: 368.611 0.065 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -36758,18 +36799,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 13 % of the run time was spent in pair search, +46: NOTE: 14 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.001 194.7 +46: Time: 0.003 0.002 193.5 46: (ns/day) (hour/ns) -46: Performance: 1002.375 0.024 +46: Performance: 958.698 0.025 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_26_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_26_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/26 (51 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/26 (50 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/27 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_27_input.mdp]: @@ -36823,10 +36864,13 @@ 46: 46: Writing final coordinates. 46: +46: NOTE: 51 % of the run time was spent in pair search, +46: you might want to increase nstlist (this has no effect on accuracy) +46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.007 0.004 193.9 +46: Time: 0.017 0.008 197.7 46: (ns/day) (hour/ns) -46: Performance: 394.783 0.061 +46: Performance: 174.230 0.138 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -36851,14 +36895,14 @@ 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 193.4 +46: Time: 0.003 0.002 194.1 46: (ns/day) (hour/ns) -46: Performance: 951.149 0.025 +46: Performance: 904.905 0.027 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_27_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_27_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/27 (48 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/27 (63 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/28 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_28_input.mdp]: @@ -36913,9 +36957,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.007 0.004 194.4 +46: Time: 0.009 0.004 194.5 46: (ns/day) (hour/ns) -46: Performance: 399.857 0.060 +46: Performance: 331.929 0.072 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -36936,18 +36980,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 13 % of the run time was spent in pair search, +46: NOTE: 14 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 193.9 +46: Time: 0.003 0.002 193.4 46: (ns/day) (hour/ns) -46: Performance: 979.115 0.025 +46: Performance: 975.240 0.025 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_28_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_28_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/28 (48 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/28 (50 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/29 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_29_input.mdp]: @@ -37002,9 +37046,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.006 0.003 194.6 +46: Time: 0.009 0.005 194.3 46: (ns/day) (hour/ns) -46: Performance: 460.192 0.052 +46: Performance: 324.310 0.074 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -37025,18 +37069,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 13 % of the run time was spent in pair search, +46: NOTE: 22 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.001 194.6 +46: Time: 0.003 0.002 193.4 46: (ns/day) (hour/ns) -46: Performance: 1067.694 0.022 +46: Performance: 853.268 0.028 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_29_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_29_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/29 (47 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/29 (51 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/30 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_30_input.mdp]: @@ -37091,9 +37135,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.007 0.004 193.5 +46: Time: 0.008 0.004 194.3 46: (ns/day) (hour/ns) -46: Performance: 394.530 0.061 +46: Performance: 363.350 0.066 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -37114,18 +37158,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 13 % of the run time was spent in pair search, +46: NOTE: 17 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.001 194.0 +46: Time: 0.004 0.002 193.1 46: (ns/day) (hour/ns) -46: Performance: 1030.200 0.023 +46: Performance: 807.523 0.030 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_30_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_30_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/30 (48 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/30 (51 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/31 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_31_input.mdp]: @@ -37180,9 +37224,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.007 0.004 195.1 +46: Time: 0.008 0.004 194.2 46: (ns/day) (hour/ns) -46: Performance: 386.729 0.062 +46: Performance: 347.546 0.069 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -37203,18 +37247,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 13 % of the run time was spent in pair search, +46: NOTE: 19 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.001 194.3 +46: Time: 0.003 0.002 194.0 46: (ns/day) (hour/ns) -46: Performance: 992.044 0.024 +46: Performance: 844.611 0.028 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_31_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_31_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/31 (48 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/31 (50 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/32 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_32_input.mdp]: @@ -37269,9 +37313,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.008 0.004 195.1 +46: Time: 0.008 0.004 194.1 46: (ns/day) (hour/ns) -46: Performance: 367.797 0.065 +46: Performance: 353.022 0.068 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -37292,24 +37336,24 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 23 % of the run time was spent in pair search, +46: NOTE: 14 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 194.5 +46: Time: 0.003 0.002 192.9 46: (ns/day) (hour/ns) -46: Performance: 964.401 0.025 +46: Performance: 921.417 0.026 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_32_sim2.edr as single precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_32_sim1.edr as single precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/32 (48 ms) -46: [----------] 33 tests from MdrunIsReproduced/MdrunRerunFreeEnergyTest (1385 ms total) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/32 (49 ms) +46: [----------] 33 tests from MdrunIsReproduced/MdrunRerunFreeEnergyTest (1347 ms total) 46: 46: [----------] Global test environment tear-down -46: [==========] 58 tests from 5 test cases ran. (6224 ms total) +46: [==========] 58 tests from 5 test cases ran. (5896 ms total) 46: [ PASSED ] 58 tests. -46/54 Test #46: MdrunNonIntegratorTests ............. Passed 6.25 sec +46/54 Test #46: MdrunNonIntegratorTests ............. Passed 5.92 sec test 47 Start 47: MdrunTpiTests @@ -37350,7 +37394,7 @@ 47: There are: 1 Other residues 47: Analysing residues not classified as Protein/DNA/RNA/Water and splitting into groups... 47: This run will generate roughly 0 Mb of data -47: [ OK ] Simple/TpiTest.ReproducesOutput/0 (792 ms) +47: [ OK ] Simple/TpiTest.ReproducesOutput/0 (679 ms) 47: [ RUN ] Simple/TpiTest.ReproducesOutput/1 47: Ignoring obsolete mdp entry 'ns_type' 47: Generated 331705 of the 331705 non-bonded parameter combinations @@ -37383,13 +37427,13 @@ 47: There are: 1 Other residues 47: Analysing residues not classified as Protein/DNA/RNA/Water and splitting into groups... 47: This run will generate roughly 0 Mb of data -47: [ OK ] Simple/TpiTest.ReproducesOutput/1 (645 ms) -47: [----------] 2 tests from Simple/TpiTest (1437 ms total) +47: [ OK ] Simple/TpiTest.ReproducesOutput/1 (550 ms) +47: [----------] 2 tests from Simple/TpiTest (1229 ms total) 47: 47: [----------] Global test environment tear-down -47: [==========] 2 tests from 1 test case ran. (1437 ms total) +47: [==========] 2 tests from 1 test case ran. (1229 ms total) 47: [ PASSED ] 2 tests. -47/54 Test #47: MdrunTpiTests ....................... Passed 1.46 sec +47/54 Test #47: MdrunTpiTests ....................... Passed 1.25 sec test 48 Start 48: MdrunMpiTests @@ -37404,7 +37448,7 @@ 48: For a correct single-point energy evaluation with nsteps = 0, use 48: continuation = yes to avoid constraining the input coordinates. 48: -48: Setting the LD random seed to 515272695 +48: Setting the LD random seed to 2126114815 48: Generated 3 of the 3 non-bonded parameter combinations 48: Generating 1-4 interactions: fudge = 0.5 48: Generated 3 of the 3 1-4 parameter combinations @@ -37443,17 +37487,20 @@ 48: starting mdrun 'spc2' 48: 0 steps, 0.0 ps. 48: -48: NOTE: 24 % of the run time was spent in domain decomposition, -48: 17 % of the run time was spent in pair search, +48: NOTE: 26 % of the run time was spent in domain decomposition, +48: 19 % of the run time was spent in pair search, 48: you might want to increase nstlist (this has no effect on accuracy) 48: +48: NOTE: 6 % of the run time was spent communicating energies, +48: you might want to increase some nst* mdp options +48: 48: Core t (s) Wall t (s) (%) -48: Time: 0.001 0.000 312.4 +48: Time: 0.001 0.000 277.0 48: (ns/day) (hour/ns) -48: Performance: 226.351 0.106 +48: Performance: 215.067 0.112 48: This run will generate roughly 0 Mb of data -48: [ OK ] DomainDecompositionSpecialCasesTest.AnEmptyDomainWorks (255 ms) -48: [----------] 1 test from DomainDecompositionSpecialCasesTest (256 ms total) +48: [ OK ] DomainDecompositionSpecialCasesTest.AnEmptyDomainWorks (55 ms) +48: [----------] 1 test from DomainDecompositionSpecialCasesTest (55 ms total) 48: 48: [----------] 4 tests from MimicTest 48: [ RUN ] MimicTest.OneQuantumMol @@ -37462,7 +37509,7 @@ 48: For a correct single-point energy evaluation with nsteps = 0, use 48: continuation = yes to avoid constraining the input coordinates. 48: -48: Setting the LD random seed to -42156033 +48: Setting the LD random seed to -1907703881 48: Generated 10 of the 10 non-bonded parameter combinations 48: Generating 1-4 interactions: fudge = 0.5 48: Generated 10 of the 10 1-4 parameter combinations @@ -37503,24 +37550,24 @@ 48: Reading frames from gro file 'Generated by gmx solvate', 12 atoms. 48: Reading frame 0 time 0.000 Last frame 0 time 0.000 48: -48: NOTE: 67 % of the run time was spent in domain decomposition, -48: 10 % of the run time was spent in pair search, +48: NOTE: 27 % of the run time was spent in domain decomposition, +48: 14 % of the run time was spent in pair search, 48: you might want to increase nstlist (this has no effect on accuracy) 48: 48: Core t (s) Wall t (s) (%) -48: Time: 0.249 0.062 399.7 +48: Time: 0.002 0.000 379.7 48: (ns/day) (hour/ns) -48: Performance: 1.388 17.293 +48: Performance: 194.780 0.123 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_OneQuantumMol.edr as single precision energy file 48: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -48: [ OK ] MimicTest.OneQuantumMol (175 ms) +48: [ OK ] MimicTest.OneQuantumMol (9 ms) 48: [ RUN ] MimicTest.AllQuantumMol 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_AllQuantumMol_input.mdp]: 48: For a correct single-point energy evaluation with nsteps = 0, use 48: continuation = yes to avoid constraining the input coordinates. 48: -48: Setting the LD random seed to 1870659313 +48: Setting the LD random seed to -739064833 48: Generated 10 of the 10 non-bonded parameter combinations 48: Generating 1-4 interactions: fudge = 0.5 48: Generated 10 of the 10 1-4 parameter combinations @@ -37561,24 +37608,24 @@ 48: Reading frames from gro file 'Generated by gmx solvate', 12 atoms. 48: Reading frame 0 time 0.000 Last frame 0 time 0.000 48: -48: NOTE: 70 % of the run time was spent in domain decomposition, -48: 14 % of the run time was spent in pair search, +48: NOTE: 17 % of the run time was spent in domain decomposition, +48: 47 % of the run time was spent in pair search, 48: you might want to increase nstlist (this has no effect on accuracy) 48: 48: Core t (s) Wall t (s) (%) -48: Time: 0.593 0.148 399.9 +48: Time: 0.002 0.001 387.3 48: (ns/day) (hour/ns) -48: Performance: 0.583 41.181 +48: Performance: 152.264 0.158 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_AllQuantumMol.edr as single precision energy file 48: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -48: [ OK ] MimicTest.AllQuantumMol (340 ms) +48: [ OK ] MimicTest.AllQuantumMol (7 ms) 48: [ RUN ] MimicTest.TwoQuantumMol 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_TwoQuantumMol_input.mdp]: 48: For a correct single-point energy evaluation with nsteps = 0, use 48: continuation = yes to avoid constraining the input coordinates. 48: -48: Setting the LD random seed to 2144550847 +48: Setting the LD random seed to -1228939 48: Generated 10 of the 10 non-bonded parameter combinations 48: Generating 1-4 interactions: fudge = 0.5 48: Generated 10 of the 10 1-4 parameter combinations @@ -37619,24 +37666,24 @@ 48: Reading frames from gro file 'Generated by gmx solvate', 12 atoms. 48: Reading frame 0 time 0.000 Last frame 0 time 0.000 48: -48: NOTE: 90 % of the run time was spent in domain decomposition, -48: 0 % of the run time was spent in pair search, +48: NOTE: 27 % of the run time was spent in domain decomposition, +48: 18 % of the run time was spent in pair search, 48: you might want to increase nstlist (this has no effect on accuracy) 48: 48: Core t (s) Wall t (s) (%) -48: Time: 0.177 0.044 399.6 +48: Time: 0.001 0.000 383.0 48: (ns/day) (hour/ns) -48: Performance: 1.951 12.303 +48: Performance: 222.188 0.108 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_TwoQuantumMol.edr as single precision energy file 48: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -48: [ OK ] MimicTest.TwoQuantumMol (220 ms) +48: [ OK ] MimicTest.TwoQuantumMol (6 ms) 48: [ RUN ] MimicTest.BondCuts 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_BondCuts_input.mdp]: 48: For a correct single-point energy evaluation with nsteps = 0, use 48: continuation = yes to avoid constraining the input coordinates. 48: -48: Setting the LD random seed to -814743589 +48: Setting the LD random seed to 1037647607 48: Generated 2211 of the 2211 non-bonded parameter combinations 48: Generating 1-4 interactions: fudge = 0.5 48: Generated 2211 of the 2211 1-4 parameter combinations @@ -37677,22 +37724,22 @@ 48: Reading frames from gro file 'Alanine dipeptide in water', 23 atoms. 48: Reading frame 0 time 0.000 Last frame 0 time 0.000 48: -48: NOTE: 70 % of the run time was spent in domain decomposition, -48: 0 % of the run time was spent in pair search, +48: NOTE: 22 % of the run time was spent in domain decomposition, +48: 16 % of the run time was spent in pair search, 48: you might want to increase nstlist (this has no effect on accuracy) 48: 48: Core t (s) Wall t (s) (%) -48: Time: 0.194 0.048 399.7 +48: Time: 0.002 0.001 381.3 48: (ns/day) (hour/ns) -48: Performance: 1.784 13.453 +48: Performance: 147.552 0.163 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MimicTest_BondCuts.edr as single precision energy file 48: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 300.368 K 48: Calculated rlist for 1x1 atom pair-list as 1.034 nm, buffer size 0.034 nm 48: Set rlist, assuming 4x4 atom pair-list, to 1.025 nm, buffer size 0.025 nm 48: Note that mdrun will redetermine rlist based on the actual pair-list setup 48: This run will generate roughly 0 Mb of data -48: [ OK ] MimicTest.BondCuts (172 ms) -48: [----------] 4 tests from MimicTest (907 ms total) +48: [ OK ] MimicTest.BondCuts (21 ms) +48: [----------] 4 tests from MimicTest (43 ms total) 48: 48: [----------] 1 test from MultiSimTerminationTest 48: [ RUN ] MultiSimTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts @@ -37701,7 +37748,7 @@ 48: 48: [----------] 3 tests from PmeTest 48: [ RUN ] PmeTest.ReproducesEnergies -48: Setting the LD random seed to -545325318 +48: Setting the LD random seed to 1610340799 48: Generated 8 of the 10 non-bonded parameter combinations 48: Excluding 2 bonded neighbours molecule type 'Methanol' 48: Excluding 2 bonded neighbours molecule type 'SOL' @@ -37752,9 +37799,9 @@ 48: Writing final coordinates. 48: 48: Core t (s) Wall t (s) (%) -48: Time: 0.885 0.221 399.9 +48: Time: 0.053 0.013 396.3 48: (ns/day) (hour/ns) -48: Performance: 8.197 2.928 +48: Performance: 134.476 0.178 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeAuto.edr as single precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 48: log). @@ -37780,9 +37827,9 @@ 48: Writing final coordinates. 48: 48: Core t (s) Wall t (s) (%) -48: Time: 0.459 0.115 399.6 +48: Time: 0.048 0.012 397.0 48: (ns/day) (hour/ns) -48: Performance: 15.797 1.519 +48: Performance: 150.799 0.159 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeOnCpu.edr as single precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 48: log). @@ -37808,18 +37855,18 @@ 48: Writing final coordinates. 48: 48: Core t (s) Wall t (s) (%) -48: Time: 0.150 0.039 384.5 +48: Time: 0.049 0.012 397.7 48: (ns/day) (hour/ns) -48: Performance: 46.402 0.517 +48: Performance: 146.932 0.163 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeOnCpuTune.edr as single precision energy file -48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 [ OK ] PmeTest.ReproducesEnergies (1003 ms) +48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 [ OK ] PmeTest.ReproducesEnergies (215 ms) 48: [ RUN ] PmeTest.ScalesTheBox 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBox_input.mdp]: 48: For a correct single-point energy evaluation with nsteps = 0, use 48: continuation = yes to avoid constraining the input coordinates. 48: -48: Setting the LD random seed to -25464937 +48: Setting the LD random seed to -270009093 48: Generated 8 of the 10 non-bonded parameter combinations 48: Excluding 2 bonded neighbours molecule type 'Methanol' 48: Excluding 2 bonded neighbours molecule type 'SOL' @@ -37861,9 +37908,9 @@ 48: 0 steps, 0.0 ps. 48: 48: Core t (s) Wall t (s) (%) -48: Time: 0.003 0.001 362.6 +48: Time: 0.003 0.001 354.8 48: (ns/day) (hour/ns) -48: Performance: 113.370 0.212 +48: Performance: 108.256 0.222 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBox_spc-and-methanol_PmeOnCpu.edr as single precision energy file 48: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 1046.79 K 48: Calculated rlist for 1x1 atom pair-list as 1.000 nm, buffer size 0.000 nm @@ -37872,14 +37919,14 @@ 48: Calculating fourier grid dimensions for X Y Z 48: Using a fourier grid of 28x28x28, spacing 0.108 0.108 0.108 48: This run will generate roughly 0 Mb of data -48: [ OK ] PmeTest.ScalesTheBox (57 ms) +48: [ OK ] PmeTest.ScalesTheBox (12 ms) 48: [ RUN ] PmeTest.ScalesTheBoxWithWalls 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBoxWithWalls_input.mdp]: 48: For a correct single-point energy evaluation with nsteps = 0, use 48: continuation = yes to avoid constraining the input coordinates. 48: -48: Setting the LD random seed to -576193539 +48: Setting the LD random seed to 1793978751 48: Generated 8 of the 10 non-bonded parameter combinations 48: Excluding 2 bonded neighbours molecule type 'Methanol' 48: Excluding 2 bonded neighbours molecule type 'SOL' @@ -37922,9 +37969,9 @@ 48: 0 steps, 0.0 ps. 48: 48: Core t (s) Wall t (s) (%) -48: Time: 0.064 0.016 394.9 +48: Time: 0.010 0.003 383.4 48: (ns/day) (hour/ns) -48: Performance: 5.314 4.517 +48: Performance: 34.029 0.705 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBoxWithWalls_spc-and-methanol_PmeOnCpu.edr as single precision energy file 48: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 966.268 K 48: Calculated rlist for 1x1 atom pair-list as 1.000 nm, buffer size 0.000 nm @@ -37933,8 +37980,8 @@ 48: Calculating fourier grid dimensions for X Y Z 48: Using a fourier grid of 28x28x128, spacing 0.108 0.108 0.118 48: This run will generate roughly 0 Mb of data -48: [ OK ] PmeTest.ScalesTheBoxWithWalls (709 ms) -48: [----------] 3 tests from PmeTest (1769 ms total) +48: [ OK ] PmeTest.ScalesTheBoxWithWalls (630 ms) +48: [----------] 3 tests from PmeTest (858 ms total) 48: 48: [----------] 1 test from ReplicaExchangeTerminationTest 48: [ RUN ] ReplicaExchangeTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts @@ -37999,7 +38046,7 @@ 48: Norm of force = 8.7722017e+01 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_0_minimize.edr as single precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/0 (720 ms) +48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/0 (586 ms) 48: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_1_input.mdp]: @@ -38060,7 +38107,7 @@ 48: Norm of force = 1.8453371e+02 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_1_minimize.edr as single precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 (660 ms) +48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 (588 ms) 48: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_2_input.mdp]: @@ -38119,7 +38166,7 @@ 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_2_minimize.edr as single precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 turning H bonds into constraints... 48: This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 (223 ms) +48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 (135 ms) 48: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_3_input.mdp]: @@ -38185,7 +38232,7 @@ 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_3_minimize.edr as single precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 turning H bonds into constraints... 48: This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 (279 ms) +48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 (133 ms) 48: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_4_input.mdp]: @@ -38254,7 +38301,7 @@ 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_4_minimize.edr as single precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 3.000 Last energy frame read 2 time 3.000 turning all bonds into constraints... 48: This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 (187 ms) +48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 (19 ms) 48: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_5_input.mdp]: @@ -38330,8 +38377,8 @@ 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_5_minimize.edr as single precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 turning all bonds into constraints... 48: This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 (2514 ms) -48: [----------] 6 tests from MinimizersWorkWithConstraints/EnergyMinimizationTest (4583 ms total) +48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 (19 ms) +48: [----------] 6 tests from MinimizersWorkWithConstraints/EnergyMinimizationTest (1480 ms total) 48: 48: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest 48: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 @@ -38380,7 +38427,7 @@ 48: Norm of force = 1.6383933e+00 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_0_minimize.edr as single precision energy file 48: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 (64 ms) +48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 (7 ms) 48: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/1 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_1_input.mdp]: @@ -38430,7 +38477,7 @@ 48: Norm of force = 1.0525324e+00 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_1_minimize.edr as single precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Last energy frame read 1 time 0.000 This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/1 (184 ms) +48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/1 (8 ms) 48: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/2 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_2_input.mdp]: @@ -38455,7 +38502,7 @@ 48: 48: There was 1 warning 48: This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/2 (4 ms) +48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/2 (3 ms) 48: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_3_input.mdp]: @@ -38513,7 +38560,7 @@ 48: Norm of force = 4.6227568e+03 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_3_minimize.edr as single precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 (644 ms) +48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 (135 ms) 48: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_4_input.mdp]: @@ -38574,7 +38621,7 @@ 48: Norm of force = 3.6139019e+03 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_4_minimize.edr as single precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 (378 ms) +48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 (134 ms) 48: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_5_input.mdp]: @@ -38607,16 +38654,16 @@ 48: 48: There was 1 warning 48: This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 (150 ms) -48: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest (1424 ms total) +48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 (127 ms) +48: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest (414 ms total) 48: 48: [----------] Global test environment tear-down -48: [==========] 22 tests from 7 test cases ran. (8939 ms total) +48: [==========] 22 tests from 7 test cases ran. (2851 ms total) 48: [ PASSED ] 22 tests. 48: 48: YOU HAVE 4 DISABLED TESTS 48: -48/54 Test #48: MdrunMpiTests ....................... Passed 8.96 sec +48/54 Test #48: MdrunMpiTests ....................... Passed 2.87 sec test 49 Start 49: MdrunMpiCoordinationTestsOneRank @@ -38672,9 +38719,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.003 0.003 98.1 +49: Time: 0.003 0.003 98.4 49: (ns/day) (hour/ns) -49: Performance: 543.646 0.044 +49: Performance: 533.893 0.045 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -38721,9 +38768,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.9 +49: Time: 0.001 0.001 97.1 49: (ns/day) (hour/ns) -49: Performance: 1323.152 0.018 +49: Performance: 1202.067 0.020 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -38772,9 +38819,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.0 +49: Time: 0.001 0.001 96.8 49: (ns/day) (hour/ns) -49: Performance: 1469.958 0.016 +49: Performance: 1095.801 0.022 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -38823,9 +38870,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.6 +49: Time: 0.001 0.001 97.0 49: (ns/day) (hour/ns) -49: Performance: 1288.019 0.019 +49: Performance: 1149.150 0.021 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 49: @@ -38874,9 +38921,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.2 +49: Time: 0.001 0.001 97.0 49: (ns/day) (hour/ns) -49: Performance: 1357.557 0.018 +49: Performance: 1211.047 0.020 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 49: @@ -38925,13 +38972,13 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.9 +49: Time: 0.001 0.001 96.8 49: (ns/day) (hour/ns) -49: Performance: 1300.801 0.018 +49: Performance: 1263.452 0.019 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file -49: [ OK ] BasicPropagators/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (189 ms) -49: [----------] 1 test from BasicPropagators/PeriodicActionsTest (189 ms total) +49: [ OK ] BasicPropagators/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (99 ms) +49: [----------] 1 test from BasicPropagators/PeriodicActionsTest (99 ms total) 49: 49: [----------] 18 tests from PropagatorsWithCoupling/PeriodicActionsTest 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 @@ -38981,9 +39028,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.5 +49: Time: 0.001 0.001 96.9 49: (ns/day) (hour/ns) -49: Performance: 1104.841 0.022 +49: Performance: 1248.094 0.019 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -39030,9 +39077,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.0 +49: Time: 0.001 0.001 97.0 49: (ns/day) (hour/ns) -49: Performance: 1433.029 0.017 +49: Performance: 1172.553 0.020 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -39081,9 +39128,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.1 +49: Time: 0.001 0.001 96.5 49: (ns/day) (hour/ns) -49: Performance: 1425.733 0.017 +49: Performance: 1109.018 0.022 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -39132,9 +39179,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.1 +49: Time: 0.001 0.001 97.0 49: (ns/day) (hour/ns) -49: Performance: 1436.706 0.017 +49: Performance: 1165.014 0.021 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 49: @@ -39183,9 +39230,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.002 0.002 98.2 +49: Time: 0.001 0.001 96.0 49: (ns/day) (hour/ns) -49: Performance: 646.510 0.037 +49: Performance: 1219.437 0.020 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 49: @@ -39234,12 +39281,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.1 +49: Time: 0.001 0.001 97.0 49: (ns/day) (hour/ns) -49: Performance: 1464.716 0.016 +49: Performance: 1204.653 0.020 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (45 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (36 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_input.mdp]: @@ -39287,9 +39334,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.7 +49: Time: 0.001 0.001 96.8 49: (ns/day) (hour/ns) -49: Performance: 1350.711 0.018 +49: Performance: 1113.830 0.022 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -39336,9 +39383,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.6 +49: Time: 0.001 0.001 96.8 49: (ns/day) (hour/ns) -49: Performance: 1277.072 0.019 +49: Performance: 1161.938 0.021 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -39387,9 +39434,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.8 +49: Time: 0.001 0.001 96.7 49: (ns/day) (hour/ns) -49: Performance: 1365.077 0.018 +49: Performance: 1133.921 0.021 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -39438,9 +39485,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.9 +49: Time: 0.001 0.001 96.9 49: (ns/day) (hour/ns) -49: Performance: 1339.260 0.018 +49: Performance: 1045.586 0.023 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file 49: @@ -39489,9 +39536,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.9 +49: Time: 0.001 0.001 97.0 49: (ns/day) (hour/ns) -49: Performance: 1334.617 0.018 +49: Performance: 1108.619 0.022 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file 49: @@ -39540,12 +39587,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.5 +49: Time: 0.001 0.001 96.8 49: (ns/day) (hour/ns) -49: Performance: 1077.215 0.022 +49: Performance: 1146.584 0.021 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 (43 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 (37 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_input.mdp]: @@ -39593,9 +39640,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.4 +49: Time: 0.001 0.001 96.5 49: (ns/day) (hour/ns) -49: Performance: 1463.672 0.016 +49: Performance: 1261.900 0.019 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -39642,9 +39689,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.9 +49: Time: 0.001 0.001 96.8 49: (ns/day) (hour/ns) -49: Performance: 1308.259 0.018 +49: Performance: 1110.617 0.022 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -39693,9 +39740,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.7 +49: Time: 0.001 0.001 96.7 49: (ns/day) (hour/ns) -49: Performance: 1412.332 0.017 +49: Performance: 1124.196 0.021 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -39744,9 +39791,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.7 +49: Time: 0.001 0.001 97.0 49: (ns/day) (hour/ns) -49: Performance: 1375.747 0.017 +49: Performance: 1051.116 0.023 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file 49: @@ -39795,9 +39842,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.6 +49: Time: 0.001 0.001 96.6 49: (ns/day) (hour/ns) -49: Performance: 1351.897 0.018 +49: Performance: 1225.014 0.020 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file 49: @@ -39846,12 +39893,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.003 0.003 98.1 +49: Time: 0.001 0.001 96.1 49: (ns/day) (hour/ns) -49: Performance: 573.399 0.042 +49: Performance: 1099.713 0.022 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 (46 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 (38 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_input.mdp]: @@ -39895,9 +39942,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.002 0.002 98.2 +49: Time: 0.001 0.001 96.8 49: (ns/day) (hour/ns) -49: Performance: 594.709 0.040 +49: Performance: 1179.061 0.020 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -39940,9 +39987,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.002 0.002 97.9 +49: Time: 0.001 0.001 96.9 49: (ns/day) (hour/ns) -49: Performance: 607.075 0.040 +49: Performance: 1167.000 0.021 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -39987,9 +40034,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.003 0.003 97.2 +49: Time: 0.001 0.001 97.2 49: (ns/day) (hour/ns) -49: Performance: 566.023 0.042 +49: Performance: 1024.546 0.023 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -40034,9 +40081,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.002 0.002 96.8 +49: Time: 0.001 0.001 97.0 49: (ns/day) (hour/ns) -49: Performance: 902.122 0.027 +49: Performance: 1141.908 0.021 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file 49: @@ -40081,9 +40128,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.002 0.002 96.7 +49: Time: 0.001 0.001 96.8 49: (ns/day) (hour/ns) -49: Performance: 852.559 0.028 +49: Performance: 1169.881 0.021 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file 49: @@ -40128,12 +40175,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.0 +49: Time: 0.001 0.001 96.7 49: (ns/day) (hour/ns) -49: Performance: 1366.591 0.018 +49: Performance: 1278.131 0.019 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 (49 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 (37 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_input.mdp]: @@ -40177,9 +40224,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.002 0.002 96.3 +49: Time: 0.001 0.001 96.6 49: (ns/day) (hour/ns) -49: Performance: 814.247 0.029 +49: Performance: 1194.608 0.020 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -40224,7 +40271,7 @@ 49: Core t (s) Wall t (s) (%) 49: Time: 0.001 0.001 96.6 49: (ns/day) (hour/ns) -49: Performance: 994.928 0.024 +49: Performance: 1192.989 0.020 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -40269,9 +40316,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.002 0.002 96.8 +49: Time: 0.001 0.002 97.2 49: (ns/day) (hour/ns) -49: Performance: 806.889 0.030 +49: Performance: 977.252 0.025 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -40316,9 +40363,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.002 96.5 +49: Time: 0.001 0.001 96.7 49: (ns/day) (hour/ns) -49: Performance: 975.858 0.025 +49: Performance: 1163.034 0.021 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file 49: @@ -40363,9 +40410,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.5 +49: Time: 0.001 0.001 96.6 49: (ns/day) (hour/ns) -49: Performance: 1027.108 0.023 +49: Performance: 1133.712 0.021 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file 49: @@ -40410,12 +40457,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.6 +49: Time: 0.001 0.002 95.4 49: (ns/day) (hour/ns) -49: Performance: 1230.642 0.020 +49: Performance: 962.292 0.025 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 (54 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 (37 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_input.mdp]: @@ -40459,9 +40506,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.002 0.002 97.5 +49: Time: 0.001 0.001 96.4 49: (ns/day) (hour/ns) -49: Performance: 742.598 0.032 +49: Performance: 1203.946 0.020 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -40504,9 +40551,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.2 +49: Time: 0.001 0.001 96.6 49: (ns/day) (hour/ns) -49: Performance: 1369.325 0.018 +49: Performance: 1184.957 0.020 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -40551,9 +40598,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.6 +49: Time: 0.001 0.001 96.7 49: (ns/day) (hour/ns) -49: Performance: 1389.399 0.017 +49: Performance: 1126.045 0.021 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -40598,9 +40645,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.6 +49: Time: 0.001 0.001 96.1 49: (ns/day) (hour/ns) -49: Performance: 1428.047 0.017 +49: Performance: 1122.148 0.021 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file 49: @@ -40645,9 +40692,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.8 +49: Time: 0.001 0.001 96.7 49: (ns/day) (hour/ns) -49: Performance: 1320.033 0.018 +49: Performance: 1128.521 0.021 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file 49: @@ -40692,12 +40739,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.7 +49: Time: 0.001 0.001 96.5 49: (ns/day) (hour/ns) -49: Performance: 1332.885 0.018 +49: Performance: 1195.072 0.020 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 (44 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 (38 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_input.mdp]: @@ -40745,9 +40792,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.002 0.002 97.8 +49: Time: 0.001 0.001 96.6 49: (ns/day) (hour/ns) -49: Performance: 728.719 0.033 +49: Performance: 1271.536 0.019 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -40794,9 +40841,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.9 +49: Time: 0.001 0.001 94.5 49: (ns/day) (hour/ns) -49: Performance: 1432.696 0.017 +49: Performance: 1141.062 0.021 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -40845,9 +40892,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.8 +49: Time: 0.001 0.002 96.9 49: (ns/day) (hour/ns) -49: Performance: 1323.720 0.018 +49: Performance: 958.251 0.025 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -40896,9 +40943,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.8 +49: Time: 0.001 0.001 96.8 49: (ns/day) (hour/ns) -49: Performance: 1287.211 0.019 +49: Performance: 1248.600 0.019 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file 49: @@ -40947,9 +40994,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.7 +49: Time: 0.001 0.001 96.7 49: (ns/day) (hour/ns) -49: Performance: 1363.868 0.018 +49: Performance: 1197.162 0.020 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file 49: @@ -40998,12 +41045,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.002 0.002 97.5 +49: Time: 0.001 0.001 96.8 49: (ns/day) (hour/ns) -49: Performance: 741.169 0.032 +49: Performance: 1199.960 0.020 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 (44 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 (37 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_input.mdp]: @@ -41058,9 +41105,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.002 0.002 97.7 +49: Time: 0.001 0.001 96.4 49: (ns/day) (hour/ns) -49: Performance: 692.357 0.035 +49: Performance: 1224.527 0.020 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -41114,9 +41161,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.6 +49: Time: 0.001 0.001 96.3 49: (ns/day) (hour/ns) -49: Performance: 1430.700 0.017 +49: Performance: 1244.816 0.019 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -41172,9 +41219,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.6 +49: Time: 0.001 0.001 96.5 49: (ns/day) (hour/ns) -49: Performance: 1455.373 0.016 +49: Performance: 1202.536 0.020 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -41230,9 +41277,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.6 +49: Time: 0.001 0.001 96.8 49: (ns/day) (hour/ns) -49: Performance: 1441.749 0.017 +49: Performance: 1104.049 0.022 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file 49: @@ -41288,9 +41335,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.6 +49: Time: 0.001 0.001 96.5 49: (ns/day) (hour/ns) -49: Performance: 1419.492 0.017 +49: Performance: 1177.258 0.020 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file 49: @@ -41346,12 +41393,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.4 +49: Time: 0.001 0.001 96.6 49: (ns/day) (hour/ns) -49: Performance: 1487.707 0.016 +49: Performance: 1173.446 0.020 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 (44 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 (38 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/8 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_input.mdp]: @@ -41399,9 +41446,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.4 +49: Time: 0.001 0.001 96.3 49: (ns/day) (hour/ns) -49: Performance: 1478.070 0.016 +49: Performance: 1330.007 0.018 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -41448,9 +41495,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.0 +49: Time: 0.001 0.001 96.8 49: (ns/day) (hour/ns) -49: Performance: 1262.158 0.019 +49: Performance: 1031.234 0.023 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -41499,9 +41546,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.4 +49: Time: 0.001 0.001 96.5 49: (ns/day) (hour/ns) -49: Performance: 1301.351 0.018 +49: Performance: 1183.364 0.020 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -41550,9 +41597,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.5 +49: Time: 0.001 0.001 96.6 49: (ns/day) (hour/ns) -49: Performance: 1448.188 0.017 +49: Performance: 1164.794 0.021 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as single precision energy file 49: @@ -41601,9 +41648,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.4 +49: Time: 0.001 0.001 96.3 49: (ns/day) (hour/ns) -49: Performance: 1471.362 0.016 +49: Performance: 1287.750 0.019 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as single precision energy file 49: @@ -41652,12 +41699,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.3 +49: Time: 0.001 0.001 96.6 49: (ns/day) (hour/ns) -49: Performance: 1504.418 0.016 +49: Performance: 1167.885 0.021 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as single precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/8 (40 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/8 (37 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/9 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_input.mdp]: @@ -41701,9 +41748,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.9 +49: Time: 0.001 0.001 96.8 49: (ns/day) (hour/ns) -49: Performance: 1502.950 0.016 +49: Performance: 1242.556 0.019 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -41746,9 +41793,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.6 +49: Time: 0.001 0.001 96.9 49: (ns/day) (hour/ns) -49: Performance: 1412.332 0.017 +49: Performance: 1205.832 0.020 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -41793,9 +41840,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.0 +49: Time: 0.001 0.001 96.9 49: (ns/day) (hour/ns) -49: Performance: 1447.848 0.017 +49: Performance: 1201.833 0.020 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -41840,9 +41887,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.1 +49: Time: 0.001 0.001 96.8 49: (ns/day) (hour/ns) -49: Performance: 1393.799 0.017 +49: Performance: 1204.888 0.020 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as single precision energy file 49: @@ -41887,9 +41934,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.9 +49: Time: 0.001 0.001 96.8 49: (ns/day) (hour/ns) -49: Performance: 1480.912 0.016 +49: Performance: 1254.703 0.019 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as single precision energy file 49: @@ -41934,9 +41981,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.5 +49: Time: 0.001 0.001 97.0 49: (ns/day) (hour/ns) -49: Performance: 1399.817 0.017 +49: Performance: 1150.008 0.021 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as single precision energy file 49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/9 (36 ms) @@ -41983,9 +42030,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.7 +49: Time: 0.001 0.001 96.6 49: (ns/day) (hour/ns) -49: Performance: 1436.036 0.017 +49: Performance: 1224.040 0.020 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -42028,9 +42075,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.5 +49: Time: 0.001 0.001 96.8 49: (ns/day) (hour/ns) -49: Performance: 1488.785 0.016 +49: Performance: 1115.443 0.022 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -42075,9 +42122,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.2 +49: Time: 0.001 0.001 96.8 49: (ns/day) (hour/ns) -49: Performance: 1209.382 0.020 +49: Performance: 1156.702 0.021 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -42122,9 +42169,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.5 +49: Time: 0.001 0.001 96.5 49: (ns/day) (hour/ns) -49: Performance: 1317.774 0.018 +49: Performance: 1083.658 0.022 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as single precision energy file 49: @@ -42169,9 +42216,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.8 +49: Time: 0.001 0.001 96.6 49: (ns/day) (hour/ns) -49: Performance: 1374.826 0.017 +49: Performance: 1144.241 0.021 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as single precision energy file 49: @@ -42216,12 +42263,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.7 +49: Time: 0.001 0.001 96.7 49: (ns/day) (hour/ns) -49: Performance: 1392.225 0.017 +49: Performance: 1153.669 0.021 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as single precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/10 (38 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/10 (37 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/11 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_input.mdp]: @@ -42265,9 +42312,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.6 +49: Time: 0.001 0.001 96.5 49: (ns/day) (hour/ns) -49: Performance: 1467.157 0.016 +49: Performance: 1174.565 0.020 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -42310,9 +42357,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.5 +49: Time: 0.001 0.001 96.6 49: (ns/day) (hour/ns) -49: Performance: 1309.372 0.018 +49: Performance: 1169.881 0.021 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -42357,9 +42404,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.8 +49: Time: 0.001 0.001 90.0 49: (ns/day) (hour/ns) -49: Performance: 1394.430 0.017 +49: Performance: 1091.530 0.022 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -42404,9 +42451,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.6 +49: Time: 0.001 0.001 96.6 49: (ns/day) (hour/ns) -49: Performance: 1468.906 0.016 +49: Performance: 1170.770 0.020 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as single precision energy file 49: @@ -42451,9 +42498,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.2 +49: Time: 0.001 0.001 96.7 49: (ns/day) (hour/ns) -49: Performance: 1240.055 0.019 +49: Performance: 1115.443 0.022 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as single precision energy file 49: @@ -42498,9 +42545,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.6 +49: Time: 0.001 0.001 95.3 49: (ns/day) (hour/ns) -49: Performance: 1440.738 0.017 +49: Performance: 992.683 0.024 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as single precision energy file 49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/11 (37 ms) @@ -42551,9 +42598,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 97.5 +49: Time: 0.001 0.001 97.8 49: (ns/day) (hour/ns) -49: Performance: 1302.451 0.018 +49: Performance: 1124.401 0.021 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -42600,9 +42647,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 98.7 +49: Time: 0.001 0.001 98.6 49: (ns/day) (hour/ns) -49: Performance: 1249.867 0.019 +49: Performance: 1139.584 0.021 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -42651,9 +42698,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 98.7 +49: Time: 0.001 0.001 98.5 49: (ns/day) (hour/ns) -49: Performance: 1135.175 0.021 +49: Performance: 1063.271 0.023 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -42702,9 +42749,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 98.6 +49: Time: 0.001 0.001 98.7 49: (ns/day) (hour/ns) -49: Performance: 1286.674 0.019 +49: Performance: 1068.805 0.022 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as single precision energy file 49: @@ -42753,9 +42800,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 98.6 +49: Time: 0.001 0.001 98.7 49: (ns/day) (hour/ns) -49: Performance: 1223.311 0.020 +49: Performance: 1136.222 0.021 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as single precision energy file 49: @@ -42804,9 +42851,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 98.8 +49: Time: 0.001 0.001 98.7 49: (ns/day) (hour/ns) -49: Performance: 1234.588 0.019 +49: Performance: 1171.438 0.020 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as single precision energy file 49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/12 (37 ms) @@ -42857,9 +42904,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.8 +49: Time: 0.001 0.001 96.4 49: (ns/day) (hour/ns) -49: Performance: 1173.000 0.020 +49: Performance: 1208.671 0.020 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -42906,9 +42953,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.8 +49: Time: 0.001 0.001 96.7 49: (ns/day) (hour/ns) -49: Performance: 1348.937 0.018 +49: Performance: 1165.896 0.021 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -42957,9 +43004,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 84.8 +49: Time: 0.001 0.001 96.8 49: (ns/day) (hour/ns) -49: Performance: 1184.274 0.020 +49: Performance: 1111.619 0.022 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -43008,9 +43055,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.7 +49: Time: 0.001 0.001 96.8 49: (ns/day) (hour/ns) -49: Performance: 1385.960 0.017 +49: Performance: 1087.675 0.022 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as single precision energy file 49: @@ -43059,9 +43106,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.9 +49: Time: 0.001 0.001 96.5 49: (ns/day) (hour/ns) -49: Performance: 1101.089 0.022 +49: Performance: 1229.169 0.020 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as single precision energy file 49: @@ -43110,9 +43157,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.8 +49: Time: 0.001 0.001 96.5 49: (ns/day) (hour/ns) -49: Performance: 1332.308 0.018 +49: Performance: 1170.770 0.020 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as single precision energy file 49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/13 (37 ms) @@ -43159,9 +43206,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 98.4 +49: Time: 0.001 0.001 98.6 49: (ns/day) (hour/ns) -49: Performance: 1272.587 0.019 +49: Performance: 1084.994 0.022 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -43204,9 +43251,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 98.8 +49: Time: 0.001 0.001 98.7 49: (ns/day) (hour/ns) -49: Performance: 1058.885 0.023 +49: Performance: 1072.714 0.022 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -43251,9 +43298,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 98.6 +49: Time: 0.001 0.001 98.7 49: (ns/day) (hour/ns) -49: Performance: 1269.702 0.019 +49: Performance: 1022.675 0.023 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -43298,9 +43345,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 98.8 +49: Time: 0.001 0.001 98.7 49: (ns/day) (hour/ns) -49: Performance: 1124.812 0.021 +49: Performance: 1044.877 0.023 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as single precision energy file 49: @@ -43347,7 +43394,7 @@ 49: Core t (s) Wall t (s) (%) 49: Time: 0.001 0.001 98.5 49: (ns/day) (hour/ns) -49: Performance: 1305.487 0.018 +49: Performance: 1145.731 0.021 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as single precision energy file 49: @@ -43392,12 +43439,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 98.8 +49: Time: 0.001 0.001 98.7 49: (ns/day) (hour/ns) -49: Performance: 1221.613 0.020 +49: Performance: 1046.830 0.023 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as single precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/14 (39 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/14 (38 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/15 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_input.mdp]: @@ -43441,9 +43488,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.7 +49: Time: 0.001 0.001 96.5 49: (ns/day) (hour/ns) -49: Performance: 1434.364 0.017 +49: Performance: 1217.990 0.020 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -43486,9 +43533,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.1 +49: Time: 0.001 0.001 96.8 49: (ns/day) (hour/ns) -49: Performance: 1196.000 0.020 +49: Performance: 1087.868 0.022 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -43533,9 +43580,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.6 +49: Time: 0.001 0.001 96.7 49: (ns/day) (hour/ns) -49: Performance: 1231.134 0.019 +49: Performance: 1138.321 0.021 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -43580,9 +43627,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.7 +49: Time: 0.001 0.001 96.8 49: (ns/day) (hour/ns) -49: Performance: 1392.225 0.017 +49: Performance: 1096.386 0.022 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as single precision energy file 49: @@ -43627,9 +43674,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.8 +49: Time: 0.001 0.002 97.1 49: (ns/day) (hour/ns) -49: Performance: 1307.149 0.018 +49: Performance: 972.316 0.025 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as single precision energy file 49: @@ -43674,12 +43721,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.7 +49: Time: 0.001 0.001 96.6 49: (ns/day) (hour/ns) -49: Performance: 1387.521 0.017 +49: Performance: 1153.453 0.021 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as single precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/15 (38 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/15 (37 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/16 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_input.mdp]: @@ -43723,9 +43770,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.3 +49: Time: 0.001 0.001 96.7 49: (ns/day) (hour/ns) -49: Performance: 1171.661 0.020 +49: Performance: 1106.826 0.022 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -43768,9 +43815,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.5 +49: Time: 0.001 0.001 97.2 49: (ns/day) (hour/ns) -49: Performance: 1199.493 0.020 +49: Performance: 1030.544 0.023 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -43815,9 +43862,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.6 +49: Time: 0.001 0.001 97.2 49: (ns/day) (hour/ns) -49: Performance: 1225.989 0.020 +49: Performance: 997.667 0.024 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -43862,9 +43909,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.6 +49: Time: 0.001 0.001 97.2 49: (ns/day) (hour/ns) -49: Performance: 1170.770 0.020 +49: Performance: 1052.733 0.023 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as single precision energy file 49: @@ -43909,9 +43956,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.8 +49: Time: 0.001 0.002 97.4 49: (ns/day) (hour/ns) -49: Performance: 1109.018 0.022 +49: Performance: 965.610 0.025 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as single precision energy file 49: @@ -43956,12 +44003,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.5 +49: Time: 0.001 0.001 97.2 49: (ns/day) (hour/ns) -49: Performance: 1233.352 0.019 +49: Performance: 1039.412 0.023 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as single precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/16 (37 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/16 (38 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/17 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_input.mdp]: @@ -44005,9 +44052,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.7 +49: Time: 0.002 0.002 97.5 49: (ns/day) (hour/ns) -49: Performance: 1090.371 0.022 +49: Performance: 804.570 0.030 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -44050,9 +44097,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.7 +49: Time: 0.002 0.002 97.3 49: (ns/day) (hour/ns) -49: Performance: 1071.408 0.022 +49: Performance: 847.166 0.028 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -44097,9 +44144,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.002 0.002 97.1 +49: Time: 0.002 0.002 97.4 49: (ns/day) (hour/ns) -49: Performance: 910.522 0.026 +49: Performance: 871.125 0.028 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -44144,9 +44191,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.8 +49: Time: 0.002 0.002 97.4 49: (ns/day) (hour/ns) -49: Performance: 1034.698 0.023 +49: Performance: 861.501 0.028 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as single precision energy file 49: @@ -44191,9 +44238,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.002 96.5 +49: Time: 0.002 0.002 97.3 49: (ns/day) (hour/ns) -49: Performance: 965.308 0.025 +49: Performance: 889.360 0.027 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as single precision energy file 49: @@ -44238,13 +44285,13 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.6 +49: Time: 0.002 0.002 97.3 49: (ns/day) (hour/ns) -49: Performance: 1071.221 0.022 +49: Performance: 891.806 0.027 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as single precision energy file 49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/17 (40 ms) -49: [----------] 18 tests from PropagatorsWithCoupling/PeriodicActionsTest (748 ms total) +49: [----------] 18 tests from PropagatorsWithCoupling/PeriodicActionsTest (673 ms total) 49: 49: [----------] 8 tests from PropagatorsWithConstraints/PeriodicActionsTest 49: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 @@ -44302,9 +44349,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.009 0.009 99.3 +49: Time: 0.001 0.001 94.5 49: (ns/day) (hour/ns) -49: Performance: 157.681 0.152 +49: Performance: 1049.147 0.023 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -44359,9 +44406,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.003 0.003 97.9 +49: Time: 0.002 0.002 96.7 49: (ns/day) (hour/ns) -49: Performance: 529.670 0.045 +49: Performance: 910.522 0.026 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -44418,9 +44465,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.9 +49: Time: 0.001 0.002 97.0 49: (ns/day) (hour/ns) -49: Performance: 1156.051 0.021 +49: Performance: 974.777 0.025 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -44477,9 +44524,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 98.9 +49: Time: 0.001 0.002 96.9 49: (ns/day) (hour/ns) -49: Performance: 276.595 0.087 +49: Performance: 978.027 0.025 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 49: @@ -44536,9 +44583,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.1 +49: Time: 0.001 0.001 96.7 49: (ns/day) (hour/ns) -49: Performance: 1234.835 0.019 +49: Performance: 1110.817 0.022 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 49: @@ -44595,12 +44642,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.2 +49: Time: 0.001 0.001 97.0 49: (ns/day) (hour/ns) -49: Performance: 1016.097 0.024 +49: Performance: 1025.911 0.023 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file -49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (4400 ms) +49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (3415 ms) 49: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_input.mdp]: @@ -44656,9 +44703,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.7 +49: Time: 0.001 0.001 96.5 49: (ns/day) (hour/ns) -49: Performance: 1019.291 0.024 +49: Performance: 1079.291 0.022 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -44713,9 +44760,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.002 0.002 95.7 +49: Time: 0.001 0.001 96.7 49: (ns/day) (hour/ns) -49: Performance: 897.392 0.027 +49: Performance: 1005.647 0.024 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -44772,9 +44819,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.003 0.003 98.2 +49: Time: 0.002 0.002 96.5 49: (ns/day) (hour/ns) -49: Performance: 440.987 0.054 +49: Performance: 928.220 0.026 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -44831,9 +44878,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.3 +49: Time: 0.001 0.002 96.9 49: (ns/day) (hour/ns) -49: Performance: 1037.137 0.023 +49: Performance: 952.031 0.025 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file 49: @@ -44890,9 +44937,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.7 +49: Time: 0.002 0.002 96.8 49: (ns/day) (hour/ns) -49: Performance: 1061.439 0.023 +49: Performance: 907.705 0.026 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file 49: @@ -44949,12 +44996,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.8 +49: Time: 0.002 0.002 96.9 49: (ns/day) (hour/ns) -49: Performance: 1117.264 0.021 +49: Performance: 855.638 0.028 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file -49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 (3031 ms) +49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 (3345 ms) 49: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_input.mdp]: @@ -45006,9 +45053,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.0 +49: Time: 0.001 0.001 96.4 49: (ns/day) (hour/ns) -49: Performance: 1127.282 0.021 +49: Performance: 1122.762 0.021 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -45059,9 +45106,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.8 +49: Time: 0.001 0.001 96.7 49: (ns/day) (hour/ns) -49: Performance: 1213.432 0.020 +49: Performance: 1031.407 0.023 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -45114,9 +45161,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.7 +49: Time: 0.001 0.001 96.8 49: (ns/day) (hour/ns) -49: Performance: 1221.613 0.020 +49: Performance: 1013.422 0.024 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -45169,9 +45216,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.002 0.002 96.9 +49: Time: 0.001 0.001 96.8 49: (ns/day) (hour/ns) -49: Performance: 767.962 0.031 +49: Performance: 995.089 0.024 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file 49: @@ -45224,9 +45271,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.003 0.003 98.1 +49: Time: 0.001 0.001 96.5 49: (ns/day) (hour/ns) -49: Performance: 507.504 0.047 +49: Performance: 1111.419 0.022 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file 49: @@ -45279,12 +45326,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.8 +49: Time: 0.001 0.001 96.8 49: (ns/day) (hour/ns) -49: Performance: 1209.620 0.020 +49: Performance: 1019.122 0.024 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file -49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 (2984 ms) +49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 (3243 ms) 49: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_input.mdp]: @@ -45336,9 +45383,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.6 +49: Time: 0.001 0.002 96.6 49: (ns/day) (hour/ns) -49: Performance: 1168.328 0.021 +49: Performance: 968.495 0.025 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -45389,9 +45436,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.5 +49: Time: 0.002 0.002 96.0 49: (ns/day) (hour/ns) -49: Performance: 1066.400 0.023 +49: Performance: 899.357 0.027 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -45444,9 +45491,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.6 +49: Time: 0.001 0.001 96.6 49: (ns/day) (hour/ns) -49: Performance: 1166.337 0.021 +49: Performance: 985.222 0.024 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -45499,9 +45546,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.5 +49: Time: 0.002 0.002 96.1 49: (ns/day) (hour/ns) -49: Performance: 1088.636 0.022 +49: Performance: 863.917 0.028 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file 49: @@ -45554,9 +45601,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.7 +49: Time: 0.001 0.002 96.7 49: (ns/day) (hour/ns) -49: Performance: 1169.881 0.021 +49: Performance: 966.216 0.025 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file 49: @@ -45609,12 +45656,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.5 +49: Time: 0.002 0.002 96.6 49: (ns/day) (hour/ns) -49: Performance: 1073.274 0.022 +49: Performance: 933.282 0.026 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file -49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 (3391 ms) +49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 (3185 ms) 49: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_input.mdp]: @@ -45666,9 +45713,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.9 +49: Time: 0.001 0.001 96.8 49: (ns/day) (hour/ns) -49: Performance: 1213.193 0.020 +49: Performance: 1029.855 0.023 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -45719,9 +45766,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.1 +49: Time: 0.001 0.002 97.0 49: (ns/day) (hour/ns) -49: Performance: 1150.867 0.021 +49: Performance: 958.400 0.025 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -45774,9 +45821,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.1 +49: Time: 0.002 0.002 97.0 49: (ns/day) (hour/ns) -49: Performance: 1041.697 0.023 +49: Performance: 932.717 0.026 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -45829,9 +45876,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.5 +49: Time: 0.002 0.002 97.0 49: (ns/day) (hour/ns) -49: Performance: 1057.794 0.023 +49: Performance: 949.976 0.025 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file 49: @@ -45884,9 +45931,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.003 0.003 98.2 +49: Time: 0.002 0.002 96.8 49: (ns/day) (hour/ns) -49: Performance: 518.438 0.046 +49: Performance: 916.619 0.026 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file 49: @@ -45939,12 +45986,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.003 0.003 98.0 +49: Time: 0.002 0.002 94.7 49: (ns/day) (hour/ns) -49: Performance: 519.837 0.046 +49: Performance: 656.640 0.037 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file -49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 (2948 ms) +49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 (3281 ms) 49: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_input.mdp]: @@ -45996,9 +46043,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.003 0.003 97.7 +49: Time: 0.001 0.001 96.8 49: (ns/day) (hour/ns) -49: Performance: 523.994 0.046 +49: Performance: 980.050 0.024 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -46049,9 +46096,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.9 +49: Time: 0.002 0.002 92.4 49: (ns/day) (hour/ns) -49: Performance: 1117.467 0.021 +49: Performance: 746.196 0.032 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -46104,9 +46151,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.7 +49: Time: 0.002 0.002 96.9 49: (ns/day) (hour/ns) -49: Performance: 1014.758 0.024 +49: Performance: 933.706 0.026 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -46159,9 +46206,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.005 0.005 98.9 +49: Time: 0.002 0.002 96.8 49: (ns/day) (hour/ns) -49: Performance: 270.914 0.089 +49: Performance: 899.225 0.027 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file 49: @@ -46214,9 +46261,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.003 0.003 98.0 +49: Time: 0.002 0.002 96.2 49: (ns/day) (hour/ns) -49: Performance: 530.994 0.045 +49: Performance: 913.899 0.026 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file 49: @@ -46269,12 +46316,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.5 +49: Time: 0.002 0.002 96.8 49: (ns/day) (hour/ns) -49: Performance: 1084.803 0.022 +49: Performance: 912.816 0.026 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file -49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 (4089 ms) +49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 (3305 ms) 49: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_input.mdp]: @@ -46330,9 +46377,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.003 0.003 99.3 +49: Time: 0.002 0.002 98.7 49: (ns/day) (hour/ns) -49: Performance: 526.501 0.046 +49: Performance: 833.639 0.029 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -46387,9 +46434,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 98.5 +49: Time: 0.002 0.002 98.6 49: (ns/day) (hour/ns) -49: Performance: 1001.234 0.024 +49: Performance: 860.178 0.028 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -46446,9 +46493,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.002 0.002 98.7 +49: Time: 0.002 0.002 98.6 49: (ns/day) (hour/ns) -49: Performance: 919.492 0.026 +49: Performance: 920.728 0.026 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -46505,9 +46552,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.003 0.003 99.3 +49: Time: 0.002 0.002 98.6 49: (ns/day) (hour/ns) -49: Performance: 460.124 0.052 +49: Performance: 825.485 0.029 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file 49: @@ -46564,9 +46611,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.003 0.003 99.3 +49: Time: 0.002 0.002 98.4 49: (ns/day) (hour/ns) -49: Performance: 463.970 0.052 +49: Performance: 681.331 0.035 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file 49: @@ -46623,12 +46670,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 98.6 +49: Time: 0.002 0.002 98.2 49: (ns/day) (hour/ns) -49: Performance: 1019.291 0.024 +49: Performance: 750.468 0.032 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file -49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 (2860 ms) +49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 (3599 ms) 49: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_input.mdp]: @@ -46680,9 +46727,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 98.6 +49: Time: 0.003 0.003 98.6 49: (ns/day) (hour/ns) -49: Performance: 982.864 0.024 +49: Performance: 527.584 0.045 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -46733,9 +46780,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.002 0.002 98.6 +49: Time: 0.003 0.003 98.4 49: (ns/day) (hour/ns) -49: Performance: 893.099 0.027 +49: Performance: 575.595 0.042 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -46788,9 +46835,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.002 0.002 98.7 +49: Time: 0.003 0.003 98.3 49: (ns/day) (hour/ns) -49: Performance: 901.199 0.027 +49: Performance: 537.996 0.045 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -46843,9 +46890,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.003 0.003 99.1 +49: Time: 0.002 0.002 98.6 49: (ns/day) (hour/ns) -49: Performance: 470.023 0.051 +49: Performance: 849.386 0.028 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file 49: @@ -46898,9 +46945,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.002 98.5 +49: Time: 0.002 0.002 98.6 49: (ns/day) (hour/ns) -49: Performance: 972.009 0.025 +49: Performance: 829.263 0.029 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file 49: @@ -46953,18 +47000,18 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.002 0.002 98.7 +49: Time: 0.002 0.002 98.6 49: (ns/day) (hour/ns) -49: Performance: 895.305 0.027 +49: Performance: 806.889 0.030 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file -49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 (3044 ms) -49: [----------] 8 tests from PropagatorsWithConstraints/PeriodicActionsTest (26747 ms total) +49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 (3661 ms) +49: [----------] 8 tests from PropagatorsWithConstraints/PeriodicActionsTest (27034 ms total) 49: 49: [----------] Global test environment tear-down -49: [==========] 27 tests from 3 test cases ran. (27684 ms total) +49: [==========] 27 tests from 3 test cases ran. (27807 ms total) 49: [ PASSED ] 27 tests. -49/54 Test #49: MdrunMpiCoordinationTestsOneRank .... Passed 27.70 sec +49/54 Test #49: MdrunMpiCoordinationTestsOneRank .... Passed 27.82 sec test 50 Start 50: MdrunMpiCoordinationTestsTwoRanks @@ -47024,18 +47071,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.9%. -50: The balanceable part of the MD step is 49%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.9%. +50: Average load imbalance: 2.4%. +50: The balanceable part of the MD step is 47%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.1%. 50: 50: -50: NOTE: 40 % of the run time was spent communicating energies, +50: NOTE: 39 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.006 0.003 195.9 +50: Time: 0.006 0.003 195.8 50: (ns/day) (hour/ns) -50: Performance: 482.125 0.050 +50: Performance: 491.628 0.049 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -47085,29 +47132,19 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was turned on during the run due to measured imbalance. -50: Average load imbalance: 36.7%. -50: The balanceable part of the MD step is 32%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 11.7%. -50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % -50: -50: NOTE: 11.7 % of the available CPU time was lost due to load imbalance -50: in the domain decomposition. -50: You can consider manually changing the decomposition (option -dd); -50: e.g. by using fewer domains along the box dimension in which there is -50: considerable inhomogeneity in the simulated system. +50: DLB was off during the run due to low measured imbalance. +50: Average load imbalance: 3.4%. +50: The balanceable part of the MD step is 47%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.6%. 50: -50: NOTE: 20 % of the run time was spent in domain decomposition, -50: 0 % of the run time was spent in pair search, -50: you might want to increase nstlist (this has no effect on accuracy) 50: -50: NOTE: 16 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 1.184 0.608 194.7 +50: Time: 0.003 0.002 190.8 50: (ns/day) (hour/ns) -50: Performance: 2.416 9.934 +50: Performance: 890.517 0.027 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -47160,28 +47197,19 @@ 50: 50: Dynamic load balancing report: 50: DLB was turned on during the run due to measured imbalance. -50: Average load imbalance: 39.6%. -50: The balanceable part of the MD step is 36%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 14.3%. +50: Average load imbalance: 8.4%. +50: The balanceable part of the MD step is 46%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 3.9%. 50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % 50: -50: NOTE: 14.3 % of the available CPU time was lost due to load imbalance -50: in the domain decomposition. -50: You can consider manually changing the decomposition (option -dd); -50: e.g. by using fewer domains along the box dimension in which there is -50: considerable inhomogeneity in the simulated system. -50: -50: NOTE: 18 % of the run time was spent in domain decomposition, -50: 0 % of the run time was spent in pair search, -50: you might want to increase nstlist (this has no effect on accuracy) 50: -50: NOTE: 17 % of the run time was spent communicating energies, +50: NOTE: 29 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 1.776 0.926 191.8 +50: Time: 0.003 0.002 193.4 50: (ns/day) (hour/ns) -50: Performance: 1.586 15.129 +50: Performance: 876.080 0.027 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -47234,18 +47262,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.6%. -50: The balanceable part of the MD step is 50%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.8%. +50: Average load imbalance: 0.8%. +50: The balanceable part of the MD step is 48%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.4%. 50: 50: -50: NOTE: 30 % of the run time was spent communicating energies, +50: NOTE: 29 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 191.2 +50: Time: 0.003 0.001 192.2 50: (ns/day) (hour/ns) -50: Performance: 1044.257 0.023 +50: Performance: 1095.801 0.022 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 50: @@ -47298,28 +47326,19 @@ 50: 50: Dynamic load balancing report: 50: DLB was turned on during the run due to measured imbalance. -50: Average load imbalance: 38.4%. -50: The balanceable part of the MD step is 34%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 13.1%. +50: Average load imbalance: 7.7%. +50: The balanceable part of the MD step is 44%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 3.4%. 50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % 50: -50: NOTE: 13.1 % of the available CPU time was lost due to load imbalance -50: in the domain decomposition. -50: You can consider manually changing the decomposition (option -dd); -50: e.g. by using fewer domains along the box dimension in which there is -50: considerable inhomogeneity in the simulated system. -50: -50: NOTE: 18 % of the run time was spent in domain decomposition, -50: 0 % of the run time was spent in pair search, -50: you might want to increase nstlist (this has no effect on accuracy) 50: -50: NOTE: 16 % of the run time was spent communicating energies, +50: NOTE: 28 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 2.156 1.114 193.5 +50: Time: 0.003 0.002 193.1 50: (ns/day) (hour/ns) -50: Performance: 1.319 18.202 +50: Performance: 926.614 0.026 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 50: @@ -47372,22 +47391,22 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.5%. -50: The balanceable part of the MD step is 49%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.2%. +50: Average load imbalance: 4.6%. +50: The balanceable part of the MD step is 43%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 2.0%. 50: 50: -50: NOTE: 29 % of the run time was spent communicating energies, +50: NOTE: 28 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 191.3 +50: Time: 0.003 0.001 192.8 50: (ns/day) (hour/ns) -50: Performance: 1008.115 0.024 +50: Performance: 979.738 0.024 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file -50: [ OK ] BasicPropagators/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (6290 ms) -50: [----------] 1 test from BasicPropagators/PeriodicActionsTest (6290 ms total) +50: [ OK ] BasicPropagators/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (114 ms) +50: [----------] 1 test from BasicPropagators/PeriodicActionsTest (114 ms total) 50: 50: [----------] 18 tests from PropagatorsWithCoupling/PeriodicActionsTest 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 @@ -47440,19 +47459,20 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.8%. -50: The balanceable part of the MD step is 49%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.9%. +50: DLB was turned on during the run due to measured imbalance. +50: Average load imbalance: 4.4%. +50: The balanceable part of the MD step is 50%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 2.2%. +50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % 50: 50: -50: NOTE: 30 % of the run time was spent communicating energies, +50: NOTE: 28 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 191.2 +50: Time: 0.003 0.002 193.3 50: (ns/day) (hour/ns) -50: Performance: 1069.733 0.022 +50: Performance: 847.399 0.028 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -47503,18 +47523,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 3.3%. -50: The balanceable part of the MD step is 49%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.6%. +50: Average load imbalance: 2.9%. +50: The balanceable part of the MD step is 46%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.3%. 50: 50: 50: NOTE: 29 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 192.0 +50: Time: 0.003 0.002 193.2 50: (ns/day) (hour/ns) -50: Performance: 991.725 0.024 +50: Performance: 916.891 0.026 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -47567,18 +47587,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.8%. -50: The balanceable part of the MD step is 48%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.9%. +50: Average load imbalance: 3.5%. +50: The balanceable part of the MD step is 35%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.2%. 50: 50: -50: NOTE: 29 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 191.4 +50: Time: 0.004 0.002 193.7 50: (ns/day) (hour/ns) -50: Performance: 994.607 0.024 +50: Performance: 757.574 0.032 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -47630,19 +47650,20 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.3%. -50: The balanceable part of the MD step is 49%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.2%. +50: DLB was turned on during the run due to measured imbalance. +50: Average load imbalance: 5.1%. +50: The balanceable part of the MD step is 51%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 2.6%. +50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % 50: 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 28 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 192.0 +50: Time: 0.003 0.002 193.1 50: (ns/day) (hour/ns) -50: Performance: 969.790 0.025 +50: Performance: 929.690 0.026 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 50: @@ -47695,18 +47716,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.1%. -50: The balanceable part of the MD step is 46%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.0%. +50: Average load imbalance: 4.3%. +50: The balanceable part of the MD step is 44%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.9%. 50: 50: -50: NOTE: 29 % of the run time was spent communicating energies, +50: NOTE: 28 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 191.4 +50: Time: 0.003 0.001 192.8 50: (ns/day) (hour/ns) -50: Performance: 992.444 0.024 +50: Performance: 986.405 0.024 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 50: @@ -47759,21 +47780,21 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.5%. -50: The balanceable part of the MD step is 50%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.3%. +50: Average load imbalance: 2.0%. +50: The balanceable part of the MD step is 46%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.9%. 50: 50: -50: NOTE: 30 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 191.0 +50: Time: 0.003 0.001 192.7 50: (ns/day) (hour/ns) -50: Performance: 1030.975 0.023 +50: Performance: 992.444 0.024 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (1168 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (47 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_input.mdp]: @@ -47825,18 +47846,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.2%. -50: The balanceable part of the MD step is 49%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.1%. +50: Average load imbalance: 3.8%. +50: The balanceable part of the MD step is 47%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.8%. 50: 50: -50: NOTE: 29 % of the run time was spent communicating energies, +50: NOTE: 28 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 190.4 +50: Time: 0.003 0.002 178.4 50: (ns/day) (hour/ns) -50: Performance: 1031.666 0.023 +50: Performance: 882.733 0.027 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -47886,19 +47907,20 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.9%. -50: The balanceable part of the MD step is 48%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.4%. +50: DLB was turned on during the run due to measured imbalance. +50: Average load imbalance: 6.5%. +50: The balanceable part of the MD step is 45%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 2.9%. +50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % 50: 50: -50: NOTE: 29 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 190.7 +50: Time: 0.003 0.002 192.5 50: (ns/day) (hour/ns) -50: Performance: 993.965 0.024 +50: Performance: 939.186 0.026 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -47951,18 +47973,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.2%. -50: The balanceable part of the MD step is 49%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.1%. +50: Average load imbalance: 2.4%. +50: The balanceable part of the MD step is 43%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.0%. 50: 50: 50: NOTE: 29 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 190.2 +50: Time: 0.003 0.001 192.0 50: (ns/day) (hour/ns) -50: Performance: 1049.416 0.023 +50: Performance: 990.131 0.024 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -48014,23 +48036,20 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 7.6%. -50: The balanceable part of the MD step is 1%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.1%. -50: +50: DLB was turned on during the run due to measured imbalance. +50: Average load imbalance: 4.9%. +50: The balanceable part of the MD step is 43%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 2.1%. +50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % 50: -50: NOTE: 68 % of the run time was spent in domain decomposition, -50: 0 % of the run time was spent in pair search, -50: you might want to increase nstlist (this has no effect on accuracy) 50: -50: NOTE: 12 % of the run time was spent communicating energies, +50: NOTE: 29 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.102 0.051 199.7 +50: Time: 0.003 0.002 192.5 50: (ns/day) (hour/ns) -50: Performance: 28.704 0.836 +50: Performance: 907.839 0.026 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file 50: @@ -48083,18 +48102,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.1%. -50: The balanceable part of the MD step is 47%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.0%. +50: Average load imbalance: 4.4%. +50: The balanceable part of the MD step is 45%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 2.0%. 50: 50: -50: NOTE: 28 % of the run time was spent communicating energies, +50: NOTE: 29 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 191.3 +50: Time: 0.003 0.002 190.8 50: (ns/day) (hour/ns) -50: Performance: 1014.841 0.024 +50: Performance: 969.790 0.025 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file 50: @@ -48146,22 +48165,23 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.8%. -50: The balanceable part of the MD step is 49%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.9%. +50: DLB was turned on during the run due to measured imbalance. +50: Average load imbalance: 5.8%. +50: The balanceable part of the MD step is 38%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 2.2%. +50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % 50: 50: 50: NOTE: 28 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 191.0 +50: Time: 0.003 0.002 192.7 50: (ns/day) (hour/ns) -50: Performance: 952.767 0.025 +50: Performance: 871.309 0.028 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 (748 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 (45 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_input.mdp]: @@ -48212,29 +48232,19 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was turned on during the run due to measured imbalance. -50: Average load imbalance: 38.6%. -50: The balanceable part of the MD step is 34%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 13.1%. -50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % -50: -50: NOTE: 13.1 % of the available CPU time was lost due to load imbalance -50: in the domain decomposition. -50: You can consider manually changing the decomposition (option -dd); -50: e.g. by using fewer domains along the box dimension in which there is -50: considerable inhomogeneity in the simulated system. +50: DLB was off during the run due to low measured imbalance. +50: Average load imbalance: 1.9%. +50: The balanceable part of the MD step is 50%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.9%. 50: -50: NOTE: 19 % of the run time was spent in domain decomposition, -50: 0 % of the run time was spent in pair search, -50: you might want to increase nstlist (this has no effect on accuracy) 50: -50: NOTE: 16 % of the run time was spent communicating energies, +50: NOTE: 29 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 2.236 1.154 193.8 +50: Time: 0.003 0.001 191.6 50: (ns/day) (hour/ns) -50: Performance: 1.273 18.856 +50: Performance: 1045.143 0.023 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -48284,19 +48294,20 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.5%. -50: The balanceable part of the MD step is 46%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.7%. +50: DLB was turned on during the run due to measured imbalance. +50: Average load imbalance: 7.4%. +50: The balanceable part of the MD step is 48%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 3.6%. +50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % 50: 50: -50: NOTE: 29 % of the run time was spent communicating energies, +50: NOTE: 28 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 190.8 +50: Time: 0.003 0.002 193.0 50: (ns/day) (hour/ns) -50: Performance: 982.238 0.024 +50: Performance: 904.639 0.027 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -48349,18 +48360,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.8%. -50: The balanceable part of the MD step is 50%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.4%. +50: Average load imbalance: 3.2%. +50: The balanceable part of the MD step is 46%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.5%. 50: 50: -50: NOTE: 30 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 190.6 +50: Time: 0.003 0.002 191.1 50: (ns/day) (hour/ns) -50: Performance: 989.495 0.024 +50: Performance: 948.440 0.025 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -48413,18 +48424,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.3%. -50: The balanceable part of the MD step is 50%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.7%. +50: Average load imbalance: 2.8%. +50: The balanceable part of the MD step is 46%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.3%. 50: 50: -50: NOTE: 30 % of the run time was spent communicating energies, +50: NOTE: 29 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 189.7 +50: Time: 0.003 0.002 192.2 50: (ns/day) (hour/ns) -50: Performance: 1007.703 0.024 +50: Performance: 926.614 0.026 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file 50: @@ -48477,18 +48488,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.3%. -50: The balanceable part of the MD step is 46%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.6%. +50: Average load imbalance: 2.6%. +50: The balanceable part of the MD step is 47%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.2%. 50: 50: -50: NOTE: 28 % of the run time was spent communicating energies, +50: NOTE: 29 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 190.9 +50: Time: 0.003 0.001 191.9 50: (ns/day) (hour/ns) -50: Performance: 942.708 0.025 +50: Performance: 1028.823 0.023 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file 50: @@ -48541,21 +48552,21 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.5%. -50: The balanceable part of the MD step is 49%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.2%. +50: Average load imbalance: 3.9%. +50: The balanceable part of the MD step is 47%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.8%. 50: 50: -50: NOTE: 30 % of the run time was spent communicating energies, +50: NOTE: 29 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 190.5 +50: Time: 0.003 0.002 192.2 50: (ns/day) (hour/ns) -50: Performance: 997.586 0.024 +50: Performance: 956.094 0.025 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 (3084 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 (44 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_input.mdp]: @@ -48600,13 +48611,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 32 % of the run time was spent communicating energies, +50: NOTE: 34 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 190.5 +50: Time: 0.003 0.001 192.0 50: (ns/day) (hour/ns) -50: Performance: 1097.363 0.022 +50: Performance: 997.586 0.024 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -48654,9 +48665,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 191.5 +50: Time: 0.003 0.001 192.1 50: (ns/day) (hour/ns) -50: Performance: 928.220 0.026 +50: Performance: 1072.433 0.022 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -48706,9 +48717,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 190.6 +50: Time: 0.002 0.001 191.7 50: (ns/day) (hour/ns) -50: Performance: 1104.346 0.022 +50: Performance: 1152.374 0.021 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -48754,13 +48765,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 34 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 190.7 +50: Time: 0.003 0.002 192.9 50: (ns/day) (hour/ns) -50: Performance: 953.062 0.025 +50: Performance: 904.772 0.027 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file 50: @@ -48810,9 +48821,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 191.1 +50: Time: 0.003 0.001 192.2 50: (ns/day) (hour/ns) -50: Performance: 971.626 0.025 +50: Performance: 1053.813 0.023 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file 50: @@ -48858,16 +48869,16 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 32 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 190.5 +50: Time: 0.003 0.001 192.6 50: (ns/day) (hour/ns) -50: Performance: 1071.967 0.022 +50: Performance: 1038.623 0.023 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 (468 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 (44 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_input.mdp]: @@ -48912,10 +48923,13 @@ 50: 50: Writing final coordinates. 50: +50: NOTE: 31 % of the run time was spent communicating energies, +50: you might want to increase some nst* mdp options +50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.067 0.034 199.5 +50: Time: 0.003 0.001 191.3 50: (ns/day) (hour/ns) -50: Performance: 43.820 0.548 +50: Performance: 1077.875 0.022 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -48963,9 +48977,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 191.3 +50: Time: 0.003 0.002 192.3 50: (ns/day) (hour/ns) -50: Performance: 892.581 0.027 +50: Performance: 975.086 0.025 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -49011,13 +49025,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 33 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.8 +50: Time: 0.003 0.001 191.9 50: (ns/day) (hour/ns) -50: Performance: 1140.428 0.021 +50: Performance: 1041.344 0.023 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -49063,13 +49077,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 32 % of the run time was spent communicating energies, +50: NOTE: 29 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.6 +50: Time: 0.003 0.001 191.8 50: (ns/day) (hour/ns) -50: Performance: 1147.224 0.021 +50: Performance: 1008.528 0.024 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file 50: @@ -49115,13 +49129,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 33 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.7 +50: Time: 0.003 0.001 191.9 50: (ns/day) (hour/ns) -50: Performance: 1128.727 0.021 +50: Performance: 1002.782 0.024 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file 50: @@ -49171,12 +49185,12 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 189.2 +50: Time: 0.003 0.001 191.6 50: (ns/day) (hour/ns) -50: Performance: 1089.792 0.022 +50: Performance: 1036.265 0.023 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 (572 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 (44 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_input.mdp]: @@ -49221,13 +49235,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 32 % of the run time was spent communicating energies, +50: NOTE: 29 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 189.3 +50: Time: 0.003 0.002 192.1 50: (ns/day) (hour/ns) -50: Performance: 1013.006 0.024 +50: Performance: 939.330 0.026 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -49275,9 +49289,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 189.8 +50: Time: 0.003 0.002 192.3 50: (ns/day) (hour/ns) -50: Performance: 1072.527 0.022 +50: Performance: 955.649 0.025 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -49327,9 +49341,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.6 +50: Time: 0.003 0.001 191.7 50: (ns/day) (hour/ns) -50: Performance: 1154.101 0.021 +50: Performance: 1057.159 0.023 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -49375,13 +49389,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 33 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 190.7 +50: Time: 0.003 0.001 191.7 50: (ns/day) (hour/ns) -50: Performance: 1105.535 0.022 +50: Performance: 1025.142 0.023 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file 50: @@ -49427,13 +49441,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 33 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 191.1 +50: Time: 0.003 0.001 191.5 50: (ns/day) (hour/ns) -50: Performance: 1071.314 0.022 +50: Performance: 1061.622 0.023 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file 50: @@ -49479,16 +49493,16 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 32 % of the run time was spent communicating energies, +50: NOTE: 33 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 190.7 +50: Time: 0.002 0.001 191.1 50: (ns/day) (hour/ns) -50: Performance: 1122.353 0.021 +50: Performance: 1127.591 0.021 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 (772 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 (44 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_input.mdp]: @@ -49537,13 +49551,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 33 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.002 0.001 191.0 +50: Time: 0.003 0.001 192.1 50: (ns/day) (hour/ns) -50: Performance: 1172.330 0.020 +50: Performance: 1036.613 0.023 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -49591,13 +49605,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 32 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 190.5 +50: Time: 0.003 0.001 192.0 50: (ns/day) (hour/ns) -50: Performance: 1085.376 0.022 +50: Performance: 1097.754 0.022 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -49651,9 +49665,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 190.4 +50: Time: 0.003 0.001 192.2 50: (ns/day) (hour/ns) -50: Performance: 1080.332 0.022 +50: Performance: 1039.675 0.023 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -49703,13 +49717,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 21 % of the run time was spent communicating energies, +50: NOTE: 32 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 1.708 0.886 192.8 +50: Time: 0.003 0.001 191.5 50: (ns/day) (hour/ns) -50: Performance: 1.658 14.477 +50: Performance: 1047.453 0.023 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file 50: @@ -49759,10 +49773,13 @@ 50: 50: Writing final coordinates. 50: +50: NOTE: 35 % of the run time was spent communicating energies, +50: you might want to increase some nst* mdp options +50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.139 0.070 199.8 +50: Time: 0.003 0.001 192.1 50: (ns/day) (hour/ns) -50: Performance: 21.114 1.137 +50: Performance: 1072.433 0.022 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file 50: @@ -49812,16 +49829,16 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 32 % of the run time was spent communicating energies, +50: NOTE: 34 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 190.4 +50: Time: 0.002 0.001 191.0 50: (ns/day) (hour/ns) -50: Performance: 1081.280 0.022 +50: Performance: 1123.683 0.021 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 (2884 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 (42 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_input.mdp]: @@ -49877,13 +49894,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 32 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 190.0 +50: Time: 0.003 0.001 191.6 50: (ns/day) (hour/ns) -50: Performance: 1066.216 0.023 +50: Performance: 1049.505 0.023 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -49938,13 +49955,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 32 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 189.9 +50: Time: 0.002 0.001 190.8 50: (ns/day) (hour/ns) -50: Performance: 1037.224 0.023 +50: Performance: 1142.226 0.021 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -50001,13 +50018,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 32 % of the run time was spent communicating energies, +50: NOTE: 27 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 190.0 +50: Time: 0.003 0.001 192.1 50: (ns/day) (hour/ns) -50: Performance: 1043.903 0.023 +50: Performance: 999.123 0.024 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -50068,9 +50085,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 190.8 +50: Time: 0.003 0.001 191.6 50: (ns/day) (hour/ns) -50: Performance: 964.477 0.025 +50: Performance: 1062.904 0.023 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file 50: @@ -50127,13 +50144,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 32 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 189.7 +50: Time: 0.003 0.001 191.6 50: (ns/day) (hour/ns) -50: Performance: 1044.877 0.023 +50: Performance: 1062.263 0.023 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file 50: @@ -50194,12 +50211,12 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 189.1 +50: Time: 0.003 0.001 191.5 50: (ns/day) (hour/ns) -50: Performance: 1048.701 0.023 +50: Performance: 1119.599 0.021 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 (1064 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 (42 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/8 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_input.mdp]: @@ -50248,13 +50265,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 32 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 189.5 +50: Time: 0.003 0.001 190.5 50: (ns/day) (hour/ns) -50: Performance: 971.932 0.025 +50: Performance: 1047.364 0.023 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -50302,13 +50319,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 32 % of the run time was spent communicating energies, +50: NOTE: 35 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 189.8 +50: Time: 0.003 0.002 191.7 50: (ns/day) (hour/ns) -50: Performance: 950.122 0.025 +50: Performance: 952.546 0.025 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -50358,13 +50375,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 32 % of the run time was spent communicating energies, +50: NOTE: 34 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 190.2 +50: Time: 0.003 0.002 191.9 50: (ns/day) (hour/ns) -50: Performance: 1026.680 0.023 +50: Performance: 976.632 0.025 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -50418,9 +50435,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 190.0 +50: Time: 0.003 0.001 191.3 50: (ns/day) (hour/ns) -50: Performance: 992.923 0.024 +50: Performance: 1070.384 0.022 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as single precision energy file 50: @@ -50470,13 +50487,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 32 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 190.5 +50: Time: 0.003 0.001 191.6 50: (ns/day) (hour/ns) -50: Performance: 988.383 0.024 +50: Performance: 1052.913 0.023 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as single precision energy file 50: @@ -50526,16 +50543,16 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 29 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 189.8 +50: Time: 0.003 0.002 192.1 50: (ns/day) (hour/ns) -50: Performance: 1056.162 0.023 +50: Performance: 953.874 0.025 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as single precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/8 (912 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/8 (44 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/9 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_input.mdp]: @@ -50580,17 +50597,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 13 % of the run time was spent in domain decomposition, -50: 0 % of the run time was spent in pair search, -50: you might want to increase nstlist (this has no effect on accuracy) -50: -50: NOTE: 19 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 1.078 0.539 200.0 +50: Time: 0.003 0.001 192.3 50: (ns/day) (hour/ns) -50: Performance: 2.724 8.811 +50: Performance: 1043.726 0.023 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -50634,13 +50647,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 33 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 191.5 +50: Time: 0.004 0.002 193.7 50: (ns/day) (hour/ns) -50: Performance: 1005.811 0.024 +50: Performance: 777.068 0.031 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -50690,9 +50703,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 191.1 +50: Time: 0.003 0.002 193.0 50: (ns/day) (hour/ns) -50: Performance: 979.582 0.025 +50: Performance: 960.716 0.025 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -50738,13 +50751,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 32 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 190.8 +50: Time: 0.003 0.002 192.0 50: (ns/day) (hour/ns) -50: Performance: 876.204 0.027 +50: Performance: 966.671 0.025 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as single precision energy file 50: @@ -50794,9 +50807,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 191.4 +50: Time: 0.003 0.001 192.2 50: (ns/day) (hour/ns) -50: Performance: 1031.407 0.023 +50: Performance: 1084.230 0.022 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as single precision energy file 50: @@ -50842,16 +50855,16 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 32 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 191.2 +50: Time: 0.003 0.001 192.6 50: (ns/day) (hour/ns) -50: Performance: 896.673 0.027 +50: Performance: 1069.826 0.022 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as single precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/9 (2636 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/9 (45 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/10 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_input.mdp]: @@ -50896,13 +50909,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 32 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 190.4 +50: Time: 0.003 0.001 192.1 50: (ns/day) (hour/ns) -50: Performance: 1028.222 0.023 +50: Performance: 1024.546 0.023 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -50946,13 +50959,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 29 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 190.5 +50: Time: 0.003 0.001 191.9 50: (ns/day) (hour/ns) -50: Performance: 1056.343 0.023 +50: Performance: 1052.014 0.023 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -50998,13 +51011,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 30 % of the run time was spent communicating energies, +50: NOTE: 33 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 190.6 +50: Time: 0.003 0.001 191.6 50: (ns/day) (hour/ns) -50: Performance: 972.009 0.025 +50: Performance: 1053.003 0.023 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -51050,13 +51063,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 32 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 190.8 +50: Time: 0.003 0.001 192.5 50: (ns/day) (hour/ns) -50: Performance: 1022.590 0.023 +50: Performance: 1075.898 0.022 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as single precision energy file 50: @@ -51102,13 +51115,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 32 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 190.8 +50: Time: 0.003 0.001 192.4 50: (ns/day) (hour/ns) -50: Performance: 1030.200 0.023 +50: Performance: 987.829 0.024 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as single precision energy file 50: @@ -51154,16 +51167,16 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 32 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 190.1 +50: Time: 0.003 0.001 192.0 50: (ns/day) (hour/ns) -50: Performance: 906.303 0.026 +50: Performance: 1029.597 0.023 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as single precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/10 (608 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/10 (44 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/11 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_input.mdp]: @@ -51208,13 +51221,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 32 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 190.8 +50: Time: 0.003 0.001 191.8 50: (ns/day) (hour/ns) -50: Performance: 1000.340 0.024 +50: Performance: 1051.116 0.023 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -51258,13 +51271,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 32 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 191.3 +50: Time: 0.003 0.001 192.3 50: (ns/day) (hour/ns) -50: Performance: 994.767 0.024 +50: Performance: 1018.364 0.024 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -51314,9 +51327,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 190.6 +50: Time: 0.003 0.001 192.1 50: (ns/day) (hour/ns) -50: Performance: 1009.851 0.024 +50: Performance: 998.152 0.024 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -51366,9 +51379,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 190.4 +50: Time: 0.003 0.002 192.2 50: (ns/day) (hour/ns) -50: Performance: 960.267 0.025 +50: Performance: 975.395 0.025 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as single precision energy file 50: @@ -51414,13 +51427,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 32 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 190.7 +50: Time: 0.003 0.001 191.4 50: (ns/day) (hour/ns) -50: Performance: 1030.889 0.023 +50: Performance: 1041.520 0.023 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as single precision energy file 50: @@ -51466,16 +51479,16 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 190.6 +50: Time: 0.003 0.001 192.1 50: (ns/day) (hour/ns) -50: Performance: 1036.875 0.023 +50: Performance: 1039.587 0.023 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as single precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/11 (1160 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/11 (44 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/12 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_input.mdp]: @@ -51526,16 +51539,17 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.9%. -50: The balanceable part of the MD step is 58%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.7%. +50: DLB was turned on during the run due to measured imbalance. +50: Average load imbalance: 4.5%. +50: The balanceable part of the MD step is 57%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 2.6%. +50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % 50: 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 191.1 +50: Time: 0.004 0.002 192.1 50: (ns/day) (hour/ns) -50: Performance: 772.198 0.031 +50: Performance: 775.015 0.031 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -51585,16 +51599,17 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.7%. -50: The balanceable part of the MD step is 57%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.0%. +50: DLB was turned on during the run due to measured imbalance. +50: Average load imbalance: 4.8%. +50: The balanceable part of the MD step is 52%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 2.5%. +50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % 50: 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 190.5 +50: Time: 0.004 0.002 189.7 50: (ns/day) (hour/ns) -50: Performance: 762.214 0.031 +50: Performance: 728.504 0.033 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -51646,19 +51661,17 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.7%. -50: The balanceable part of the MD step is 61%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.0%. -50: +50: DLB was turned on during the run due to measured imbalance. +50: Average load imbalance: 4.7%. +50: The balanceable part of the MD step is 56%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 2.6%. +50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % 50: -50: NOTE: 72 % of the run time was spent communicating energies, -50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.064 0.032 199.4 +50: Time: 0.004 0.002 190.9 50: (ns/day) (hour/ns) -50: Performance: 46.035 0.521 +50: Performance: 800.233 0.030 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -51711,15 +51724,15 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.6%. -50: The balanceable part of the MD step is 58%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.0%. +50: Average load imbalance: 1.1%. +50: The balanceable part of the MD step is 59%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.7%. 50: 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 191.9 +50: Time: 0.004 0.002 192.5 50: (ns/day) (hour/ns) -50: Performance: 733.273 0.033 +50: Performance: 758.227 0.032 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as single precision energy file 50: @@ -51771,17 +51784,16 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was turned on during the run due to measured imbalance. -50: Average load imbalance: 4.0%. -50: The balanceable part of the MD step is 54%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 2.2%. -50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % +50: DLB was off during the run due to low measured imbalance. +50: Average load imbalance: 0.4%. +50: The balanceable part of the MD step is 59%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.2%. 50: 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 191.8 +50: Time: 0.004 0.002 192.1 50: (ns/day) (hour/ns) -50: Performance: 735.374 0.033 +50: Performance: 699.352 0.034 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as single precision energy file 50: @@ -51834,18 +51846,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.5%. -50: The balanceable part of the MD step is 59%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.9%. +50: Average load imbalance: 2.5%. +50: The balanceable part of the MD step is 56%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.4%. 50: 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 190.8 +50: Time: 0.004 0.002 191.1 50: (ns/day) (hour/ns) -50: Performance: 832.232 0.029 +50: Performance: 790.580 0.030 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as single precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/12 (832 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/12 (45 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/13 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_input.mdp]: @@ -51897,18 +51909,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 0.7%. -50: The balanceable part of the MD step is 53%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.4%. +50: Average load imbalance: 2.3%. +50: The balanceable part of the MD step is 52%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.2%. 50: 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 32 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 191.0 +50: Time: 0.003 0.002 192.9 50: (ns/day) (hour/ns) -50: Performance: 890.452 0.027 +50: Performance: 842.014 0.029 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -51959,18 +51971,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.0%. -50: The balanceable part of the MD step is 51%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.5%. +50: Average load imbalance: 2.1%. +50: The balanceable part of the MD step is 54%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.1%. 50: 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 32 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 191.4 +50: Time: 0.003 0.002 192.7 50: (ns/day) (hour/ns) -50: Performance: 897.784 0.027 +50: Performance: 848.859 0.028 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -52023,18 +52035,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.2%. -50: The balanceable part of the MD step is 48%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.0%. +50: Average load imbalance: 2.6%. +50: The balanceable part of the MD step is 51%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.3%. 50: 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 33 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 190.8 +50: Time: 0.003 0.002 193.0 50: (ns/day) (hour/ns) -50: Performance: 825.153 0.029 +50: Performance: 832.175 0.029 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -52086,19 +52098,20 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.2%. -50: The balanceable part of the MD step is 52%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.6%. +50: DLB was turned on during the run due to measured imbalance. +50: Average load imbalance: 4.0%. +50: The balanceable part of the MD step is 50%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 2.0%. +50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % 50: 50: -50: NOTE: 32 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 191.4 +50: Time: 0.003 0.002 192.8 50: (ns/day) (hour/ns) -50: Performance: 885.397 0.027 +50: Performance: 850.793 0.028 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as single precision energy file 50: @@ -52151,24 +52164,19 @@ 50: 50: Dynamic load balancing report: 50: DLB was turned on during the run due to measured imbalance. -50: Average load imbalance: 31.9%. -50: The balanceable part of the MD step is 24%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 7.6%. +50: Average load imbalance: 5.4%. +50: The balanceable part of the MD step is 50%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 2.7%. 50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % 50: -50: NOTE: 7.6 % of the available CPU time was lost due to load imbalance -50: in the domain decomposition. -50: You can consider manually changing the decomposition (option -dd); -50: e.g. by using fewer domains along the box dimension in which there is -50: considerable inhomogeneity in the simulated system. 50: -50: NOTE: 56 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.108 0.054 199.7 +50: Time: 0.004 0.002 193.2 50: (ns/day) (hour/ns) -50: Performance: 27.196 0.882 +50: Performance: 801.065 0.030 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as single precision energy file 50: @@ -52220,22 +52228,23 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 0.7%. +50: DLB was turned on during the run due to measured imbalance. +50: Average load imbalance: 6.3%. 50: The balanceable part of the MD step is 53%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.4%. +50: Part of the total run time spent waiting due to load imbalance: 3.4%. +50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % 50: 50: 50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 191.4 +50: Time: 0.003 0.002 192.5 50: (ns/day) (hour/ns) -50: Performance: 901.726 0.027 +50: Performance: 860.959 0.028 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as single precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/13 (1740 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/13 (47 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/14 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_input.mdp]: @@ -52281,9 +52290,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 190.5 +50: Time: 0.004 0.002 191.6 50: (ns/day) (hour/ns) -50: Performance: 819.827 0.029 +50: Performance: 758.274 0.032 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -52327,13 +52336,10 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 23 % of the run time was spent communicating energies, -50: you might want to increase some nst* mdp options -50: 50: Core t (s) Wall t (s) (%) -50: Time: 3.032 1.554 195.1 +50: Time: 0.004 0.002 190.3 50: (ns/day) (hour/ns) -50: Performance: 0.945 25.392 +50: Performance: 777.509 0.031 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -52379,13 +52385,10 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 23 % of the run time was spent communicating energies, -50: you might want to increase some nst* mdp options -50: 50: Core t (s) Wall t (s) (%) -50: Time: 2.968 1.534 193.5 +50: Time: 0.004 0.002 191.1 50: (ns/day) (hour/ns) -50: Performance: 0.958 25.065 +50: Performance: 794.352 0.030 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -52432,9 +52435,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.020 20.8 +50: Time: 0.004 0.002 190.8 50: (ns/day) (hour/ns) -50: Performance: 74.528 0.322 +50: Performance: 778.688 0.031 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as single precision energy file 50: @@ -52481,9 +52484,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 190.2 +50: Time: 0.004 0.002 191.8 50: (ns/day) (hour/ns) -50: Performance: 895.565 0.027 +50: Performance: 763.584 0.031 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as single precision energy file 50: @@ -52530,12 +52533,12 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 191.6 +50: Time: 0.003 0.002 191.5 50: (ns/day) (hour/ns) -50: Performance: 825.596 0.029 +50: Performance: 809.592 0.030 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as single precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/14 (5412 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/14 (46 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/15 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_input.mdp]: @@ -52580,13 +52583,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 32 % of the run time was spent communicating energies, +50: NOTE: 35 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 191.6 +50: Time: 0.003 0.002 192.3 50: (ns/day) (hour/ns) -50: Performance: 1015.929 0.024 +50: Performance: 887.950 0.027 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -52634,9 +52637,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 190.5 +50: Time: 0.003 0.002 191.6 50: (ns/day) (hour/ns) -50: Performance: 982.864 0.024 +50: Performance: 959.744 0.025 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -52682,13 +52685,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 32 % of the run time was spent communicating energies, +50: NOTE: 34 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 191.2 +50: Time: 0.003 0.002 191.4 50: (ns/day) (hour/ns) -50: Performance: 1051.296 0.023 +50: Performance: 930.885 0.026 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -52734,13 +52737,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 32 % of the run time was spent communicating energies, +50: NOTE: 34 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 191.3 +50: Time: 0.003 0.002 188.1 50: (ns/day) (hour/ns) -50: Performance: 1023.865 0.023 +50: Performance: 808.477 0.030 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as single precision energy file 50: @@ -52786,13 +52789,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 49 % of the run time was spent communicating energies, +50: NOTE: 33 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 2.512 1.292 194.4 +50: Time: 0.003 0.002 192.3 50: (ns/day) (hour/ns) -50: Performance: 1.137 21.110 +50: Performance: 946.910 0.025 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as single precision energy file 50: @@ -52842,12 +52845,12 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 190.7 +50: Time: 0.003 0.002 192.9 50: (ns/day) (hour/ns) -50: Performance: 977.950 0.025 +50: Performance: 893.358 0.027 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as single precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/15 (3384 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/15 (46 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/16 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_input.mdp]: @@ -52896,9 +52899,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 191.3 +50: Time: 0.003 0.002 193.1 50: (ns/day) (hour/ns) -50: Performance: 883.366 0.027 +50: Performance: 851.087 0.028 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -52942,13 +52945,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 30 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 191.6 +50: Time: 0.003 0.002 193.4 50: (ns/day) (hour/ns) -50: Performance: 932.646 0.026 +50: Performance: 846.410 0.028 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -52994,13 +52997,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 30 % of the run time was spent communicating energies, +50: NOTE: 32 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 191.4 +50: Time: 0.004 0.002 193.8 50: (ns/day) (hour/ns) -50: Performance: 889.295 0.027 +50: Performance: 767.867 0.031 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -53046,13 +53049,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 28 % of the run time was spent communicating energies, +50: NOTE: 34 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 192.4 +50: Time: 0.004 0.002 193.2 50: (ns/day) (hour/ns) -50: Performance: 819.173 0.029 +50: Performance: 647.938 0.037 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as single precision energy file 50: @@ -53102,9 +53105,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 192.2 +50: Time: 0.003 0.002 193.5 50: (ns/day) (hour/ns) -50: Performance: 901.001 0.027 +50: Performance: 829.095 0.029 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as single precision energy file 50: @@ -53150,16 +53153,16 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 30 % of the run time was spent communicating energies, +50: NOTE: 33 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 192.7 +50: Time: 0.004 0.002 194.1 50: (ns/day) (hour/ns) -50: Performance: 953.800 0.025 +50: Performance: 746.512 0.032 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as single precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/16 (900 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/16 (50 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/17 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_input.mdp]: @@ -53204,13 +53207,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 26 % of the run time was spent communicating energies, +50: NOTE: 27 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 192.7 +50: Time: 0.004 0.002 193.9 50: (ns/day) (hour/ns) -50: Performance: 764.911 0.031 +50: Performance: 695.327 0.035 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -53254,13 +53257,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 50 % of the run time was spent communicating energies, +50: NOTE: 27 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 2.532 1.298 195.1 +50: Time: 0.004 0.002 193.7 50: (ns/day) (hour/ns) -50: Performance: 1.132 21.208 +50: Performance: 679.078 0.035 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -53306,13 +53309,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 50 % of the run time was spent communicating energies, +50: NOTE: 29 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 2.328 1.182 197.0 +50: Time: 0.004 0.002 193.5 50: (ns/day) (hour/ns) -50: Performance: 1.243 19.312 +50: Performance: 725.501 0.033 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -53358,13 +53361,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 27 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 192.1 +50: Time: 0.005 0.003 194.4 50: (ns/day) (hour/ns) -50: Performance: 738.946 0.032 +50: Performance: 544.607 0.044 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as single precision energy file 50: @@ -53410,13 +53413,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 28 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 192.0 +50: Time: 0.005 0.002 193.3 50: (ns/day) (hour/ns) -50: Performance: 738.370 0.033 +50: Performance: 622.376 0.039 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as single precision energy file 50: @@ -53462,17 +53465,17 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 27 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 193.0 +50: Time: 0.005 0.003 184.8 50: (ns/day) (hour/ns) -50: Performance: 732.532 0.033 +50: Performance: 540.949 0.044 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as single precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/17 (6064 ms) -50: [----------] 18 tests from PropagatorsWithCoupling/PeriodicActionsTest (34408 ms total) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/17 (56 ms) +50: [----------] 18 tests from PropagatorsWithCoupling/PeriodicActionsTest (820 ms total) 50: 50: [----------] 8 tests from PropagatorsWithConstraints/PeriodicActionsTest 50: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 @@ -53534,22 +53537,18 @@ 50: 50: Dynamic load balancing report: 50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 8.2%. -50: The balanceable part of the MD step is 33%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 2.7%. -50: +50: Average load imbalance: 10.3%. +50: The balanceable part of the MD step is 45%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 4.6%. 50: -50: NOTE: 16 % of the run time was spent in domain decomposition, -50: 0 % of the run time was spent in pair search, -50: you might want to increase nstlist (this has no effect on accuracy) 50: -50: NOTE: 13 % of the run time was spent communicating energies, +50: NOTE: 28 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 2.672 1.364 195.9 +50: Time: 0.004 0.002 193.7 50: (ns/day) (hour/ns) -50: Performance: 1.077 22.287 +50: Performance: 767.819 0.031 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -53608,18 +53607,18 @@ 50: 50: Dynamic load balancing report: 50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 4.8%. -50: The balanceable part of the MD step is 48%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 2.3%. +50: Average load imbalance: 5.6%. +50: The balanceable part of the MD step is 46%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 2.6%. 50: 50: 50: NOTE: 29 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 189.5 +50: Time: 0.003 0.002 193.1 50: (ns/day) (hour/ns) -50: Performance: 807.841 0.030 +50: Performance: 851.911 0.028 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -53679,23 +53678,19 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 4.1%. -50: The balanceable part of the MD step is 34%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.4%. -50: +50: DLB got disabled because it was unsuitable to use. +50: Average load imbalance: 9.3%. +50: The balanceable part of the MD step is 47%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 4.4%. 50: -50: NOTE: 17 % of the run time was spent in domain decomposition, -50: 0 % of the run time was spent in pair search, -50: you might want to increase nstlist (this has no effect on accuracy) 50: -50: NOTE: 13 % of the run time was spent communicating energies, +50: NOTE: 28 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 3.008 1.540 195.3 +50: Time: 0.003 0.002 193.5 50: (ns/day) (hour/ns) -50: Performance: 0.954 25.160 +50: Performance: 823.939 0.029 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -53756,18 +53751,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.6%. -50: The balanceable part of the MD step is 55%, load imbalance is computed from this. +50: Average load imbalance: 3.0%. +50: The balanceable part of the MD step is 46%, load imbalance is computed from this. 50: Part of the total run time spent waiting due to load imbalance: 1.4%. 50: 50: -50: NOTE: 29 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 192.6 +50: Time: 0.005 0.002 190.5 50: (ns/day) (hour/ns) -50: Performance: 986.247 0.024 +50: Performance: 605.642 0.040 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 50: @@ -53827,19 +53822,19 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 4.1%. -50: The balanceable part of the MD step is 48%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 2.0%. +50: DLB got disabled because it was unsuitable to use. +50: Average load imbalance: 7.0%. +50: The balanceable part of the MD step is 45%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 3.1%. 50: 50: -50: NOTE: 28 % of the run time was spent communicating energies, +50: NOTE: 29 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 192.1 +50: Time: 0.003 0.002 193.2 50: (ns/day) (hour/ns) -50: Performance: 869.833 0.028 +50: Performance: 832.007 0.029 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file 50: @@ -53900,21 +53895,21 @@ 50: 50: Dynamic load balancing report: 50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 6.6%. -50: The balanceable part of the MD step is 49%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 3.2%. +50: Average load imbalance: 6.0%. +50: The balanceable part of the MD step is 44%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 2.7%. 50: 50: -50: NOTE: 28 % of the run time was spent communicating energies, +50: NOTE: 29 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 191.0 +50: Time: 0.004 0.002 193.4 50: (ns/day) (hour/ns) -50: Performance: 829.598 0.029 +50: Performance: 762.922 0.031 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as single precision energy file -50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (18116 ms) +50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (3567 ms) 50: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_input.mdp]: @@ -53974,18 +53969,24 @@ 50: 50: Dynamic load balancing report: 50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 9.9%. +50: Average load imbalance: 10.8%. 50: The balanceable part of the MD step is 48%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 4.8%. +50: Part of the total run time spent waiting due to load imbalance: 5.2%. 50: +50: NOTE: 5.2 % of the available CPU time was lost due to load imbalance +50: in the domain decomposition. +50: You might want to use dynamic load balancing (option -dlb.) +50: You can also consider manually changing the decomposition (option -dd); +50: e.g. by using fewer domains along the box dimension in which there is +50: considerable inhomogeneity in the simulated system. 50: 50: NOTE: 27 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 191.4 +50: Time: 0.004 0.002 193.0 50: (ns/day) (hour/ns) -50: Performance: 758.274 0.032 +50: Performance: 747.781 0.032 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -54044,18 +54045,18 @@ 50: 50: Dynamic load balancing report: 50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 5.4%. +50: Average load imbalance: 4.2%. 50: The balanceable part of the MD step is 48%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 2.6%. +50: Part of the total run time spent waiting due to load imbalance: 2.0%. 50: 50: -50: NOTE: 28 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 190.5 +50: Time: 0.003 0.002 192.6 50: (ns/day) (hour/ns) -50: Performance: 791.342 0.030 +50: Performance: 814.570 0.029 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -54116,18 +54117,18 @@ 50: 50: Dynamic load balancing report: 50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 6.4%. +50: Average load imbalance: 8.2%. 50: The balanceable part of the MD step is 47%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 3.0%. +50: Part of the total run time spent waiting due to load imbalance: 3.8%. 50: 50: -50: NOTE: 28 % of the run time was spent communicating energies, +50: NOTE: 27 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 190.8 +50: Time: 0.004 0.002 192.6 50: (ns/day) (hour/ns) -50: Performance: 791.037 0.030 +50: Performance: 736.913 0.033 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -54188,18 +54189,24 @@ 50: 50: Dynamic load balancing report: 50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 5.5%. -50: The balanceable part of the MD step is 47%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 2.6%. +50: Average load imbalance: 11.4%. +50: The balanceable part of the MD step is 46%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 5.3%. 50: +50: NOTE: 5.3 % of the available CPU time was lost due to load imbalance +50: in the domain decomposition. +50: You might want to use dynamic load balancing (option -dlb.) +50: You can also consider manually changing the decomposition (option -dd); +50: e.g. by using fewer domains along the box dimension in which there is +50: considerable inhomogeneity in the simulated system. 50: -50: NOTE: 27 % of the run time was spent communicating energies, +50: NOTE: 25 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 191.4 +50: Time: 0.004 0.002 193.7 50: (ns/day) (hour/ns) -50: Performance: 841.611 0.029 +50: Performance: 717.307 0.033 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file 50: @@ -54260,18 +54267,18 @@ 50: 50: Dynamic load balancing report: 50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 7.8%. +50: Average load imbalance: 6.9%. 50: The balanceable part of the MD step is 48%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 3.7%. +50: Part of the total run time spent waiting due to load imbalance: 3.3%. 50: 50: -50: NOTE: 29 % of the run time was spent communicating energies, +50: NOTE: 28 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 190.8 +50: Time: 0.004 0.002 190.5 50: (ns/day) (hour/ns) -50: Performance: 805.306 0.030 +50: Performance: 771.956 0.031 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file 50: @@ -54332,21 +54339,21 @@ 50: 50: Dynamic load balancing report: 50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 4.6%. -50: The balanceable part of the MD step is 50%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 2.3%. +50: Average load imbalance: 5.1%. +50: The balanceable part of the MD step is 47%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 2.4%. 50: 50: -50: NOTE: 29 % of the run time was spent communicating energies, +50: NOTE: 28 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 190.9 +50: Time: 0.004 0.002 193.2 50: (ns/day) (hour/ns) -50: Performance: 809.965 0.030 +50: Performance: 753.866 0.032 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as single precision energy file -50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 (14529 ms) +50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 (3470 ms) 50: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_input.mdp]: @@ -54399,10 +54406,13 @@ 50: 50: Writing final coordinates. 50: +50: NOTE: 7 % of the run time was spent communicating energies, +50: you might want to increase some nst* mdp options +50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 191.8 +50: Time: 0.004 0.002 192.4 50: (ns/day) (hour/ns) -50: Performance: 893.487 0.027 +50: Performance: 692.591 0.035 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -54454,13 +54464,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 5 % of the run time was spent communicating energies, +50: NOTE: 6 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 191.0 +50: Time: 0.004 0.002 193.2 50: (ns/day) (hour/ns) -50: Performance: 780.464 0.031 +50: Performance: 781.553 0.031 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -54514,13 +54524,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 5 % of the run time was spent communicating energies, +50: NOTE: 6 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 189.9 +50: Time: 0.004 0.002 192.5 50: (ns/day) (hour/ns) -50: Performance: 731.749 0.033 +50: Performance: 805.886 0.030 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -54574,10 +54584,13 @@ 50: 50: Writing final coordinates. 50: +50: NOTE: 6 % of the run time was spent communicating energies, +50: you might want to increase some nst* mdp options +50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 191.0 +50: Time: 0.004 0.002 193.6 50: (ns/day) (hour/ns) -50: Performance: 835.901 0.029 +50: Performance: 729.151 0.033 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file 50: @@ -54631,13 +54644,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 6 % of the run time was spent communicating energies, +50: NOTE: 5 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 192.0 +50: Time: 0.004 0.002 192.8 50: (ns/day) (hour/ns) -50: Performance: 815.703 0.029 +50: Performance: 713.982 0.034 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file 50: @@ -54691,13 +54704,16 @@ 50: 50: Writing final coordinates. 50: +50: NOTE: 8 % of the run time was spent communicating energies, +50: you might want to increase some nst* mdp options +50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 191.6 +50: Time: 0.004 0.002 191.0 50: (ns/day) (hour/ns) -50: Performance: 717.600 0.033 +50: Performance: 652.053 0.037 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as single precision energy file -50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 (14396 ms) +50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 (3508 ms) 50: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_input.mdp]: @@ -54750,13 +54766,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 5 % of the run time was spent communicating energies, +50: NOTE: 6 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 191.0 +50: Time: 0.005 0.003 189.3 50: (ns/day) (hour/ns) -50: Performance: 901.462 0.027 +50: Performance: 575.353 0.042 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -54812,9 +54828,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 191.1 +50: Time: 0.004 0.002 192.2 50: (ns/day) (hour/ns) -50: Performance: 880.273 0.027 +50: Performance: 628.055 0.038 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -54868,10 +54884,13 @@ 50: 50: Writing final coordinates. 50: +50: NOTE: 7 % of the run time was spent communicating energies, +50: you might want to increase some nst* mdp options +50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.178 0.089 199.7 +50: Time: 0.004 0.002 189.9 50: (ns/day) (hour/ns) -50: Performance: 16.463 1.458 +50: Performance: 757.388 0.032 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -54926,9 +54945,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 190.6 +50: Time: 0.004 0.002 193.2 50: (ns/day) (hour/ns) -50: Performance: 808.318 0.030 +50: Performance: 741.169 0.032 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file 50: @@ -54982,10 +55001,13 @@ 50: 50: Writing final coordinates. 50: +50: NOTE: 5 % of the run time was spent communicating energies, +50: you might want to increase some nst* mdp options +50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 191.3 +50: Time: 0.004 0.002 193.5 50: (ns/day) (hour/ns) -50: Performance: 879.959 0.027 +50: Performance: 673.068 0.036 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file 50: @@ -55039,16 +55061,16 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 7 % of the run time was spent communicating energies, +50: NOTE: 6 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 191.6 +50: Time: 0.005 0.003 190.9 50: (ns/day) (hour/ns) -50: Performance: 820.537 0.029 +50: Performance: 577.808 0.042 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as single precision energy file -50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 (14712 ms) +50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 (3828 ms) 50: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_input.mdp]: @@ -55102,9 +55124,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 193.1 +50: Time: 0.005 0.002 193.9 50: (ns/day) (hour/ns) -50: Performance: 769.978 0.031 +50: Performance: 623.510 0.038 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -55160,9 +55182,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 192.6 +50: Time: 0.004 0.002 193.8 50: (ns/day) (hour/ns) -50: Performance: 832.232 0.029 +50: Performance: 766.958 0.031 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -55217,9 +55239,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 192.3 +50: Time: 0.004 0.002 194.4 50: (ns/day) (hour/ns) -50: Performance: 754.882 0.032 +50: Performance: 698.559 0.034 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -55273,10 +55295,13 @@ 50: 50: Writing final coordinates. 50: +50: NOTE: 6 % of the run time was spent communicating energies, +50: you might want to increase some nst* mdp options +50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 192.4 +50: Time: 0.004 0.002 193.9 50: (ns/day) (hour/ns) -50: Performance: 714.852 0.034 +50: Performance: 727.901 0.033 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file 50: @@ -55330,10 +55355,13 @@ 50: 50: Writing final coordinates. 50: +50: NOTE: 6 % of the run time was spent communicating energies, +50: you might want to increase some nst* mdp options +50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 192.5 +50: Time: 0.005 0.003 188.7 50: (ns/day) (hour/ns) -50: Performance: 834.882 0.029 +50: Performance: 577.836 0.042 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file 50: @@ -55387,13 +55415,16 @@ 50: 50: Writing final coordinates. 50: +50: NOTE: 5 % of the run time was spent communicating energies, +50: you might want to increase some nst* mdp options +50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 192.8 +50: Time: 0.004 0.002 192.7 50: (ns/day) (hour/ns) -50: Performance: 804.780 0.030 +50: Performance: 656.080 0.037 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as single precision energy file -50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 (13559 ms) +50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 (3566 ms) 50: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_input.mdp]: @@ -55446,10 +55477,13 @@ 50: 50: Writing final coordinates. 50: +50: NOTE: 5 % of the run time was spent communicating energies, +50: you might want to increase some nst* mdp options +50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 192.0 +50: Time: 0.004 0.002 193.8 50: (ns/day) (hour/ns) -50: Performance: 815.487 0.029 +50: Performance: 684.054 0.035 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -55502,9 +55536,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 192.0 +50: Time: 0.004 0.002 193.1 50: (ns/day) (hour/ns) -50: Performance: 700.585 0.034 +50: Performance: 670.358 0.036 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -55558,10 +55592,13 @@ 50: 50: Writing final coordinates. 50: +50: NOTE: 5 % of the run time was spent communicating energies, +50: you might want to increase some nst* mdp options +50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 191.1 +50: Time: 0.005 0.002 194.1 50: (ns/day) (hour/ns) -50: Performance: 847.166 0.028 +50: Performance: 622.597 0.039 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -55619,9 +55656,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 193.0 +50: Time: 0.004 0.002 193.7 50: (ns/day) (hour/ns) -50: Performance: 692.785 0.035 +50: Performance: 693.800 0.035 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file 50: @@ -55675,13 +55712,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 46 % of the run time was spent communicating energies, +50: NOTE: 5 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.159 0.123 129.1 +50: Time: 0.004 0.002 193.9 50: (ns/day) (hour/ns) -50: Performance: 11.933 2.011 +50: Performance: 650.195 0.037 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file 50: @@ -55735,13 +55772,16 @@ 50: 50: Writing final coordinates. 50: +50: NOTE: 5 % of the run time was spent communicating energies, +50: you might want to increase some nst* mdp options +50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.021 0.034 62.1 +50: Time: 0.005 0.003 192.4 50: (ns/day) (hour/ns) -50: Performance: 43.820 0.548 +50: Performance: 571.935 0.042 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as single precision energy file -50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 (15276 ms) +50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 (3493 ms) 50: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_input.mdp]: @@ -55800,16 +55840,16 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 5.8%. -50: The balanceable part of the MD step is 58%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 3.4%. +50: DLB was off during the run due to low measured imbalance. +50: Average load imbalance: 2.5%. +50: The balanceable part of the MD step is 56%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.4%. 50: 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 191.3 +50: Time: 0.005 0.002 190.3 50: (ns/day) (hour/ns) -50: Performance: 687.912 0.035 +50: Performance: 605.732 0.040 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -55868,15 +55908,15 @@ 50: 50: Dynamic load balancing report: 50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 4.6%. -50: The balanceable part of the MD step is 54%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 2.5%. +50: Average load imbalance: 3.6%. +50: The balanceable part of the MD step is 58%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 2.1%. 50: 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 190.7 +50: Time: 0.005 0.002 192.9 50: (ns/day) (hour/ns) -50: Performance: 659.240 0.036 +50: Performance: 605.970 0.040 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -55937,15 +55977,15 @@ 50: 50: Dynamic load balancing report: 50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 5.9%. -50: The balanceable part of the MD step is 57%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 3.3%. +50: Average load imbalance: 5.6%. +50: The balanceable part of the MD step is 55%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 3.1%. 50: 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 190.5 +50: Time: 0.005 0.002 192.9 50: (ns/day) (hour/ns) -50: Performance: 685.729 0.035 +50: Performance: 590.746 0.041 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -56005,16 +56045,16 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 7.1%. -50: The balanceable part of the MD step is 60%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 4.3%. +50: DLB was off during the run due to low measured imbalance. +50: Average load imbalance: 3.1%. +50: The balanceable part of the MD step is 52%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.6%. 50: 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 191.5 +50: Time: 0.005 0.002 192.8 50: (ns/day) (hour/ns) -50: Performance: 659.063 0.036 +50: Performance: 615.290 0.039 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file 50: @@ -56075,15 +56115,15 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.1%. +50: Average load imbalance: 0.9%. 50: The balanceable part of the MD step is 57%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.2%. +50: Part of the total run time spent waiting due to load imbalance: 0.5%. 50: 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.005 0.002 190.0 +50: Time: 0.005 0.003 192.7 50: (ns/day) (hour/ns) -50: Performance: 599.951 0.040 +50: Performance: 520.694 0.046 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file 50: @@ -56143,26 +56183,19 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.6%. -50: The balanceable part of the MD step is 40%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.0%. -50: -50: -50: NOTE: 11 % of the run time was spent in domain decomposition, -50: 0 % of the run time was spent in pair search, -50: you might want to increase nstlist (this has no effect on accuracy) +50: DLB got disabled because it was unsuitable to use. +50: Average load imbalance: 4.2%. +50: The balanceable part of the MD step is 54%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 2.3%. 50: -50: NOTE: 18 % of the run time was spent communicating energies, -50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 4.341 2.228 194.9 +50: Time: 0.005 0.002 193.1 50: (ns/day) (hour/ns) -50: Performance: 0.659 36.405 +50: Performance: 600.360 0.040 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as single precision energy file -50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 (17228 ms) +50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 (3524 ms) 50: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_input.mdp]: @@ -56215,13 +56248,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 6 % of the run time was spent communicating energies, +50: NOTE: 8 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.005 0.002 190.9 +50: Time: 0.006 0.003 193.6 50: (ns/day) (hour/ns) -50: Performance: 591.001 0.041 +50: Performance: 489.908 0.049 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -56273,13 +56306,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 6 % of the run time was spent communicating energies, +50: NOTE: 7 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.005 0.003 191.6 +50: Time: 0.005 0.003 192.3 50: (ns/day) (hour/ns) -50: Performance: 557.167 0.043 +50: Performance: 557.343 0.043 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -56333,13 +56366,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 7 % of the run time was spent communicating energies, +50: NOTE: 8 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.005 0.003 190.2 +50: Time: 0.006 0.003 193.4 50: (ns/day) (hour/ns) -50: Performance: 561.074 0.043 +50: Performance: 456.256 0.053 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -56393,10 +56426,13 @@ 50: 50: Writing final coordinates. 50: +50: NOTE: 7 % of the run time was spent communicating energies, +50: you might want to increase some nst* mdp options +50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.080 0.040 199.2 +50: Time: 0.005 0.003 187.8 50: (ns/day) (hour/ns) -50: Performance: 36.561 0.656 +50: Performance: 525.850 0.046 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file 50: @@ -56450,13 +56486,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 6 % of the run time was spent communicating energies, +50: NOTE: 7 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 191.5 +50: Time: 0.006 0.003 193.0 50: (ns/day) (hour/ns) -50: Performance: 645.088 0.037 +50: Performance: 506.440 0.047 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file 50: @@ -56510,22 +56546,22 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 6 % of the run time was spent communicating energies, +50: NOTE: 7 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.005 0.003 191.2 +50: Time: 0.006 0.003 193.4 50: (ns/day) (hour/ns) -50: Performance: 572.147 0.042 +50: Performance: 457.017 0.053 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as single precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as single precision energy file -50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 (13536 ms) -50: [----------] 8 tests from PropagatorsWithConstraints/PeriodicActionsTest (121352 ms total) +50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 (3618 ms) +50: [----------] 8 tests from PropagatorsWithConstraints/PeriodicActionsTest (28574 ms total) 50: 50: [----------] Global test environment tear-down -50: [==========] 27 tests from 3 test cases ran. (162050 ms total) +50: [==========] 27 tests from 3 test cases ran. (29508 ms total) 50: [ PASSED ] 27 tests. -50/54 Test #50: MdrunMpiCoordinationTestsTwoRanks ... Passed 162.08 sec +50/54 Test #50: MdrunMpiCoordinationTestsTwoRanks ... Passed 29.53 sec test 51 Start 51: GmxapiExternalInterfaceTests @@ -56535,7 +56571,7 @@ 51: [----------] Global test environment set-up. 51: [----------] 8 tests from GmxApiTest 51: [ RUN ] GmxApiTest.ApiRunnerRestrainedMD -51: Setting the LD random seed to -5411167 +51: Setting the LD random seed to -147332611 51: Generated 331705 of the 331705 non-bonded parameter combinations 51: Generating 1-4 interactions: fudge = 0.5 51: Generated 331705 of the 331705 1-4 parameter combinations @@ -56584,12 +56620,12 @@ 51: Writing final coordinates. 51: 51: Core t (s) Wall t (s) (%) -51: Time: 0.002 0.001 189.8 +51: Time: 0.003 0.002 191.7 51: (ns/day) (hour/ns) -51: Performance: 406.308 0.059 -51: [ OK ] GmxApiTest.ApiRunnerRestrainedMD (1946 ms) +51: Performance: 307.779 0.078 +51: [ OK ] GmxApiTest.ApiRunnerRestrainedMD (558 ms) 51: [ RUN ] GmxApiTest.SystemConstruction -51: Setting the LD random seed to -539029509 +51: Setting the LD random seed to 1979628461 51: Generated 331705 of the 331705 non-bonded parameter combinations 51: Generating 1-4 interactions: fudge = 0.5 51: Generated 331705 of the 331705 1-4 parameter combinations @@ -56616,13 +56652,13 @@ 51: Set rlist, assuming 4x4 atom pair-list, to 1.041 nm, buffer size 0.041 nm 51: Note that mdrun will redetermine rlist based on the actual pair-list setup 51: This run will generate roughly 0 Mb of data -51: [ OK ] GmxApiTest.SystemConstruction (1805 ms) +51: [ OK ] GmxApiTest.SystemConstruction (548 ms) 51: [ RUN ] GmxApiTest.SaneVersionComparisons -51: [ OK ] GmxApiTest.SaneVersionComparisons (12 ms) +51: [ OK ] GmxApiTest.SaneVersionComparisons (0 ms) 51: [ RUN ] GmxApiTest.VersionNamed0_1_Features 51: [ OK ] GmxApiTest.VersionNamed0_1_Features (0 ms) 51: [ RUN ] GmxApiTest.RunnerBasicMD -51: Setting the LD random seed to -872420036 +51: Setting the LD random seed to -137494553 51: Generated 331705 of the 331705 non-bonded parameter combinations 51: Generating 1-4 interactions: fudge = 0.5 51: Generated 331705 of the 331705 1-4 parameter combinations @@ -56671,12 +56707,12 @@ 51: Writing final coordinates. 51: 51: Core t (s) Wall t (s) (%) -51: Time: 0.003 0.001 190.8 +51: Time: 0.003 0.002 188.3 51: (ns/day) (hour/ns) -51: Performance: 362.783 0.066 -51: [ OK ] GmxApiTest.RunnerBasicMD (1831 ms) +51: Performance: 335.763 0.071 +51: [ OK ] GmxApiTest.RunnerBasicMD (567 ms) 51: [ RUN ] GmxApiTest.RunnerReinitialize -51: Setting the LD random seed to -742533205 +51: Setting the LD random seed to -524560 51: Generated 331705 of the 331705 non-bonded parameter combinations 51: Generating 1-4 interactions: fudge = 0.5 51: Generated 331705 of the 331705 1-4 parameter combinations @@ -56729,9 +56765,9 @@ 51: Writing final coordinates. 51: 51: Core t (s) Wall t (s) (%) -51: Time: 0.004 0.002 193.1 +51: Time: 0.005 0.002 194.0 51: (ns/day) (hour/ns) -51: Performance: 1647.297 0.015 +51: Performance: 1480.730 0.016 51: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 51: log). 51: The current CPU can measure timings more accurately than the code in @@ -56754,12 +56790,12 @@ 51: Writing final coordinates. 51: 51: Core t (s) Wall t (s) (%) -51: Time: 0.188 0.094 199.8 +51: Time: 0.004 0.002 193.7 51: (ns/day) (hour/ns) -51: Performance: 37.678 0.637 -51: [ OK ] GmxApiTest.RunnerReinitialize (1918 ms) +51: Performance: 1613.150 0.015 +51: [ OK ] GmxApiTest.RunnerReinitialize (565 ms) 51: [ RUN ] GmxApiTest.RunnerContinuedMD -51: Setting the LD random seed to -1210056713 +51: Setting the LD random seed to -55117953 51: Generated 331705 of the 331705 non-bonded parameter combinations 51: Generating 1-4 interactions: fudge = 0.5 51: Generated 331705 of the 331705 1-4 parameter combinations @@ -56808,9 +56844,9 @@ 51: Writing final coordinates. 51: 51: Core t (s) Wall t (s) (%) -51: Time: 0.003 0.001 191.3 +51: Time: 0.003 0.002 192.5 51: (ns/day) (hour/ns) -51: Performance: 1319.383 0.018 +51: Performance: 1112.557 0.022 51: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 51: log). 51: The current CPU can measure timings more accurately than the code in @@ -56835,12 +56871,12 @@ 51: Writing final coordinates. 51: 51: Core t (s) Wall t (s) (%) -51: Time: 0.003 0.002 193.1 +51: Time: 0.004 0.002 194.3 51: (ns/day) (hour/ns) -51: Performance: 2093.755 0.011 -51: [ OK ] GmxApiTest.RunnerContinuedMD (1860 ms) +51: Performance: 1933.849 0.012 +51: [ OK ] GmxApiTest.RunnerContinuedMD (572 ms) 51: [ RUN ] GmxApiTest.ApiRunnerStopSignalClient -51: Setting the LD random seed to -1913147494 +51: Setting the LD random seed to -1107853601 51: Generated 331705 of the 331705 non-bonded parameter combinations 51: Generating 1-4 interactions: fudge = 0.5 51: Generated 331705 of the 331705 1-4 parameter combinations @@ -56888,13 +56924,10 @@ 51: 51: Writing final coordinates. 51: -51: NOTE: 14 % of the run time was spent in pair search, -51: you might want to increase nstlist (this has no effect on accuracy) -51: 51: Core t (s) Wall t (s) (%) -51: Time: 1.128 0.564 200.0 +51: Time: 0.003 0.001 191.9 51: (ns/day) (hour/ns) -51: Performance: 0.598 40.112 +51: Performance: 243.310 0.099 51: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 51: log). 51: The current CPU can measure timings more accurately than the code in @@ -56916,15 +56949,12 @@ 51: starting mdrun 'Water and methane' 51: 2 steps, 0.0 ps. 51: -51: NOTE: 24 % of the run time was spent in pair search, -51: you might want to increase nstlist (this has no effect on accuracy) -51: 51: Core t (s) Wall t (s) (%) -51: Time: 1.050 0.525 200.0 +51: Time: 0.002 0.001 189.9 51: (ns/day) (hour/ns) -51: Performance: 0.643 37.329 -51: [ OK ] GmxApiTest.ApiRunnerStopSignalClient (1868 ms) -51: [----------] 8 tests from GmxApiTest (11241 ms total) +51: Performance: 331.129 0.072 +51: [ OK ] GmxApiTest.ApiRunnerStopSignalClient (569 ms) +51: [----------] 8 tests from GmxApiTest (3379 ms total) 51: 51: [----------] 1 test from GmxApiBasicTest 51: [ RUN ] GmxApiBasicTest.Status @@ -56932,9 +56962,9 @@ 51: [----------] 1 test from GmxApiBasicTest (0 ms total) 51: 51: [----------] Global test environment tear-down -51: [==========] 9 tests from 2 test cases ran. (11241 ms total) +51: [==========] 9 tests from 2 test cases ran. (3379 ms total) 51: [ PASSED ] 9 tests. -51/54 Test #51: GmxapiExternalInterfaceTests ........ Passed 11.31 sec +51/54 Test #51: GmxapiExternalInterfaceTests ........ Passed 3.40 sec test 52 Start 52: GmxapiMpiTests @@ -56944,7 +56974,7 @@ 52: [----------] Global test environment set-up. 52: [----------] 8 tests from GmxApiTest 52: [ RUN ] GmxApiTest.ApiRunnerRestrainedMD -52: Setting the LD random seed to -269300801 +52: Setting the LD random seed to -1883901985 52: Generated 331705 of the 331705 non-bonded parameter combinations 52: Generating 1-4 interactions: fudge = 0.5 52: Generated 331705 of the 331705 1-4 parameter combinations @@ -56993,12 +57023,12 @@ 52: Writing final coordinates. 52: 52: Core t (s) Wall t (s) (%) -52: Time: 0.003 0.001 189.7 +52: Time: 0.003 0.002 192.1 52: (ns/day) (hour/ns) -52: Performance: 368.320 0.065 -52: [ OK ] GmxApiTest.ApiRunnerRestrainedMD (1531 ms) +52: Performance: 327.933 0.073 +52: [ OK ] GmxApiTest.ApiRunnerRestrainedMD (633 ms) 52: [ RUN ] GmxApiTest.SystemConstruction -52: Setting the LD random seed to -759062529 +52: Setting the LD random seed to -671196487 52: Generated 331705 of the 331705 non-bonded parameter combinations 52: Generating 1-4 interactions: fudge = 0.5 52: Generated 331705 of the 331705 1-4 parameter combinations @@ -57025,13 +57055,13 @@ 52: Set rlist, assuming 4x4 atom pair-list, to 1.041 nm, buffer size 0.041 nm 52: Note that mdrun will redetermine rlist based on the actual pair-list setup 52: This run will generate roughly 0 Mb of data -52: [ OK ] GmxApiTest.SystemConstruction (512 ms) +52: [ OK ] GmxApiTest.SystemConstruction (561 ms) 52: [ RUN ] GmxApiTest.SaneVersionComparisons 52: [ OK ] GmxApiTest.SaneVersionComparisons (0 ms) 52: [ RUN ] GmxApiTest.VersionNamed0_1_Features 52: [ OK ] GmxApiTest.VersionNamed0_1_Features (0 ms) 52: [ RUN ] GmxApiTest.RunnerBasicMD -52: Setting the LD random seed to -1111789569 +52: Setting the LD random seed to -268845097 52: Generated 331705 of the 331705 non-bonded parameter combinations 52: Generating 1-4 interactions: fudge = 0.5 52: Generated 331705 of the 331705 1-4 parameter combinations @@ -57080,12 +57110,12 @@ 52: Writing final coordinates. 52: 52: Core t (s) Wall t (s) (%) -52: Time: 0.002 0.001 190.3 +52: Time: 0.003 0.001 191.9 52: (ns/day) (hour/ns) -52: Performance: 397.114 0.060 -52: [ OK ] GmxApiTest.RunnerBasicMD (817 ms) +52: Performance: 365.845 0.066 +52: [ OK ] GmxApiTest.RunnerBasicMD (561 ms) 52: [ RUN ] GmxApiTest.RunnerReinitialize -52: Setting the LD random seed to -4198721 +52: Setting the LD random seed to -738329741 52: Generated 331705 of the 331705 non-bonded parameter combinations 52: Generating 1-4 interactions: fudge = 0.5 52: Generated 331705 of the 331705 1-4 parameter combinations @@ -57138,9 +57168,9 @@ 52: Writing final coordinates. 52: 52: Core t (s) Wall t (s) (%) -52: Time: 0.004 0.002 192.7 +52: Time: 0.004 0.002 194.6 52: (ns/day) (hour/ns) -52: Performance: 1929.080 0.012 +52: Performance: 1707.082 0.014 52: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 52: log). 52: The current CPU can measure timings more accurately than the code in @@ -57163,12 +57193,12 @@ 52: Writing final coordinates. 52: 52: Core t (s) Wall t (s) (%) -52: Time: 0.018 0.009 198.5 +52: Time: 0.004 0.002 194.5 52: (ns/day) (hour/ns) -52: Performance: 391.930 0.061 -52: [ OK ] GmxApiTest.RunnerReinitialize (597 ms) +52: Performance: 1829.812 0.013 +52: [ OK ] GmxApiTest.RunnerReinitialize (557 ms) 52: [ RUN ] GmxApiTest.RunnerContinuedMD -52: Setting the LD random seed to -1242304654 +52: Setting the LD random seed to -33882241 52: Generated 331705 of the 331705 non-bonded parameter combinations 52: Generating 1-4 interactions: fudge = 0.5 52: Generated 331705 of the 331705 1-4 parameter combinations @@ -57217,9 +57247,9 @@ 52: Writing final coordinates. 52: 52: Core t (s) Wall t (s) (%) -52: Time: 0.003 0.001 191.4 +52: Time: 0.003 0.002 193.5 52: (ns/day) (hour/ns) -52: Performance: 1265.758 0.019 +52: Performance: 1078.797 0.022 52: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 52: log). 52: The current CPU can measure timings more accurately than the code in @@ -57244,12 +57274,12 @@ 52: Writing final coordinates. 52: 52: Core t (s) Wall t (s) (%) -52: Time: 0.003 0.002 193.2 +52: Time: 0.003 0.002 193.6 52: (ns/day) (hour/ns) -52: Performance: 2113.103 0.011 -52: [ OK ] GmxApiTest.RunnerContinuedMD (518 ms) +52: Performance: 2040.297 0.012 +52: [ OK ] GmxApiTest.RunnerContinuedMD (553 ms) 52: [ RUN ] GmxApiTest.ApiRunnerStopSignalClient -52: Setting the LD random seed to -1082147267 +52: Setting the LD random seed to -25690617 52: Generated 331705 of the 331705 non-bonded parameter combinations 52: Generating 1-4 interactions: fudge = 0.5 52: Generated 331705 of the 331705 1-4 parameter combinations @@ -57298,9 +57328,9 @@ 52: Writing final coordinates. 52: 52: Core t (s) Wall t (s) (%) -52: Time: 0.002 0.001 190.0 +52: Time: 0.003 0.001 191.5 52: (ns/day) (hour/ns) -52: Performance: 286.264 0.084 +52: Performance: 235.890 0.102 52: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 52: log). 52: The current CPU can measure timings more accurately than the code in @@ -57323,11 +57353,11 @@ 52: 2 steps, 0.0 ps. 52: 52: Core t (s) Wall t (s) (%) -52: Time: 0.002 0.001 187.1 +52: Time: 0.002 0.001 188.9 52: (ns/day) (hour/ns) -52: Performance: 387.936 0.062 -52: [ OK ] GmxApiTest.ApiRunnerStopSignalClient (507 ms) -52: [----------] 8 tests from GmxApiTest (4482 ms total) +52: Performance: 271.808 0.088 +52: [ OK ] GmxApiTest.ApiRunnerStopSignalClient (568 ms) +52: [----------] 8 tests from GmxApiTest (3433 ms total) 52: 52: [----------] 1 test from GmxApiBasicTest 52: [ RUN ] GmxApiBasicTest.Status @@ -57335,9 +57365,9 @@ 52: [----------] 1 test from GmxApiBasicTest (0 ms total) 52: 52: [----------] Global test environment tear-down -52: [==========] 9 tests from 2 test cases ran. (4482 ms total) +52: [==========] 9 tests from 2 test cases ran. (3433 ms total) 52: [ PASSED ] 9 tests. -52/54 Test #52: GmxapiMpiTests ...................... Passed 4.52 sec +52/54 Test #52: GmxapiMpiTests ...................... Passed 3.45 sec test 53 Start 53: GmxapiInternalInterfaceTests @@ -57347,7 +57377,7 @@ 53: [----------] Global test environment set-up. 53: [----------] 2 tests from GmxApiTest 53: [ RUN ] GmxApiTest.BuildApiWorkflowImpl -53: Setting the LD random seed to -679500297 +53: Setting the LD random seed to -1631601283 53: Generated 331705 of the 331705 non-bonded parameter combinations 53: Generating 1-4 interactions: fudge = 0.5 53: Generated 331705 of the 331705 1-4 parameter combinations @@ -57374,9 +57404,9 @@ 53: Set rlist, assuming 4x4 atom pair-list, to 1.041 nm, buffer size 0.041 nm 53: Note that mdrun will redetermine rlist based on the actual pair-list setup 53: This run will generate roughly 0 Mb of data -53: [ OK ] GmxApiTest.BuildApiWorkflowImpl (516 ms) +53: [ OK ] GmxApiTest.BuildApiWorkflowImpl (572 ms) 53: [ RUN ] GmxApiTest.CreateApiWorkflow -53: Setting the LD random seed to -1310769 +53: Setting the LD random seed to -8979457 53: Generated 331705 of the 331705 non-bonded parameter combinations 53: Generating 1-4 interactions: fudge = 0.5 53: Generated 331705 of the 331705 1-4 parameter combinations @@ -57403,13 +57433,13 @@ 53: Set rlist, assuming 4x4 atom pair-list, to 1.041 nm, buffer size 0.041 nm 53: Note that mdrun will redetermine rlist based on the actual pair-list setup 53: This run will generate roughly 0 Mb of data -53: [ OK ] GmxApiTest.CreateApiWorkflow (506 ms) -53: [----------] 2 tests from GmxApiTest (1022 ms total) +53: [ OK ] GmxApiTest.CreateApiWorkflow (545 ms) +53: [----------] 2 tests from GmxApiTest (1117 ms total) 53: 53: [----------] Global test environment tear-down -53: [==========] 2 tests from 1 test case ran. (1022 ms total) +53: [==========] 2 tests from 1 test case ran. (1117 ms total) 53: [ PASSED ] 2 tests. -53/54 Test #53: GmxapiInternalInterfaceTests ........ Passed 1.08 sec +53/54 Test #53: GmxapiInternalInterfaceTests ........ Passed 1.13 sec test 54 Start 54: GmxapiInternalsMpiTests @@ -57419,7 +57449,7 @@ 54: [----------] Global test environment set-up. 54: [----------] 2 tests from GmxApiTest 54: [ RUN ] GmxApiTest.BuildApiWorkflowImpl -54: Setting the LD random seed to -396361729 +54: Setting the LD random seed to 1056820943 54: Generated 331705 of the 331705 non-bonded parameter combinations 54: Generating 1-4 interactions: fudge = 0.5 54: Generated 331705 of the 331705 1-4 parameter combinations @@ -57446,9 +57476,9 @@ 54: Set rlist, assuming 4x4 atom pair-list, to 1.041 nm, buffer size 0.041 nm 54: Note that mdrun will redetermine rlist based on the actual pair-list setup 54: This run will generate roughly 0 Mb of data -54: [ OK ] GmxApiTest.BuildApiWorkflowImpl (788 ms) +54: [ OK ] GmxApiTest.BuildApiWorkflowImpl (554 ms) 54: [ RUN ] GmxApiTest.CreateApiWorkflow -54: Setting the LD random seed to -7235 +54: Setting the LD random seed to -17370385 54: Generated 331705 of the 331705 non-bonded parameter combinations 54: Generating 1-4 interactions: fudge = 0.5 54: Generated 331705 of the 331705 1-4 parameter combinations @@ -57475,25 +57505,25 @@ 54: Set rlist, assuming 4x4 atom pair-list, to 1.041 nm, buffer size 0.041 nm 54: Note that mdrun will redetermine rlist based on the actual pair-list setup 54: This run will generate roughly 0 Mb of data -54: [ OK ] GmxApiTest.CreateApiWorkflow (501 ms) -54: [----------] 2 tests from GmxApiTest (1289 ms total) +54: [ OK ] GmxApiTest.CreateApiWorkflow (518 ms) +54: [----------] 2 tests from GmxApiTest (1072 ms total) 54: 54: [----------] Global test environment tear-down -54: [==========] 2 tests from 1 test case ran. (1289 ms total) +54: [==========] 2 tests from 1 test case ran. (1072 ms total) 54: [ PASSED ] 2 tests. -54/54 Test #54: GmxapiInternalsMpiTests ............. Passed 1.32 sec +54/54 Test #54: GmxapiInternalsMpiTests ............. Passed 1.09 sec 100% tests passed, 0 tests failed out of 54 Label Time Summary: -GTest = 252.58 sec*proc (54 tests) -IntegrationTest = 43.91 sec*proc (12 tests) -MpiTest = 205.91 sec*proc (8 tests) -SlowTest = 189.78 sec*proc (2 tests) -UnitTest = 18.89 sec*proc (40 tests) +GTest = 95.20 sec*proc (54 tests) +IntegrationTest = 24.70 sec*proc (12 tests) +MpiTest = 64.82 sec*proc (8 tests) +SlowTest = 57.35 sec*proc (2 tests) +UnitTest = 13.15 sec*proc (40 tests) -Total Test time (real) = 252.66 sec -/usr/bin/make -j16 -C build/basic-dp tests +Total Test time (real) = 95.26 sec +/usr/bin/make -j15 -C build/basic-dp tests make[1]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/cmake -S/build/reproducible-path/gromacs-2020.6 -B/build/reproducible-path/gromacs-2020.6/build/basic-dp --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/make -f CMakeFiles/Makefile2 tests @@ -57503,92 +57533,92 @@ /usr/bin/make -f CMakeFiles/Makefile2 CMakeFiles/tests.dir/all make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend +/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= -/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend +/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend +/usr/bin/make -f src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build.make src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/basic-dp/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/basic-dp/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/CMakeFiles/vmddlopen.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/external/googletest/googlemock/gtest /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/DependInfo.cmake --color= +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[4]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. +/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 0%] Built target lmfit_objlib make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/basic-dp/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/basic-dp/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 1%] Built target scanner -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend -[ 1%] Built target release-version-info -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= -[ 3%] Built target thread_mpi -/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= -[ 4%] Built target tng_io_obj -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/CMakeFiles/vmddlopen.dir/DependInfo.cmake --color= -/usr/bin/make -f src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build.make src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/external/googletest/googlemock/gtest /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/DependInfo.cmake --color= -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -make[4]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +make[4]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build -Scanning dependencies of target gtest /usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[4]: Nothing to be done for 'src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +make[4]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -make[4]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. -/usr/bin/make -f src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build.make src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/external/googletest/googlemock/gtest && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_CREATE_SHARED_LIBRARY=1 -Dgtest_EXPORTS -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -I/build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wshadow -DGTEST_HAS_PTHREAD=1 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=c++14 -o CMakeFiles/gtest.dir/src/gtest-all.cc.o -c /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/src/gtest-all.cc +make[4]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 4%] Built target linearalgebra +Scanning dependencies of target gtest +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +[ 1%] Built target scanner +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +[ 1%] Built target lmfit_objlib +/usr/bin/make -f src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build.make src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build +[ 2%] Built target tng_io_obj +[ 4%] Built target thread_mpi [ 5%] Built target modularsimulator -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -make[4]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/external/googletest/googlemock/gtest && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_CREATE_SHARED_LIBRARY=1 -Dgtest_EXPORTS -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -I/build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wshadow -DGTEST_HAS_PTHREAD=1 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=c++14 -o CMakeFiles/gtest.dir/src/gtest-all.cc.o -c /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/src/gtest-all.cc +[ 5%] Built target release-version-info +[ 5%] Built target linearalgebra [ 5%] Built target vmddlopen /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend [ 5%] Built target mdrun_objlib @@ -57674,78 +57704,77 @@ /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend -Scanning dependencies of target mdrun_test_infrastructure -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/build /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/energyreader.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/energyreader.cpp -Scanning dependencies of target testutils-mpi-test -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/energycomparison.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/energycomparison.cpp make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/domdec/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake --color= -Scanning dependencies of target utility-mpi-test -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/moduletest.cpp +/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend Scanning dependencies of target testutils-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/mpitest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/mdmodulenotification.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/mdmodulenotification.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build +Scanning dependencies of target utility-mpi-test +Scanning dependencies of target mdrun_test_infrastructure +Scanning dependencies of target testutils-mpi-test +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/build cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/interactivetest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/terminationhelper.cpp -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/physicalnodecommunicator_mpi.cpp -/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend +/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/refdata_tests.cpp -Scanning dependencies of target mdlib-test +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/testasserts_tests.cpp make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/energyreader.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/energyreader.cpp +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/mpitest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/xvgtest_tests.cpp +/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/energycomparison.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/energycomparison.cpp Scanning dependencies of target onlinehelp-test-shared +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build -Scanning dependencies of target applied_forces-test make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/calc_verletbuf.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/physicalnodecommunicator_mpi.cpp +/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/mock_helptopic.cpp +Scanning dependencies of target utility-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/alignedallocator.cpp Scanning dependencies of target domdec-test -/usr/bin/make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build +Scanning dependencies of target applied_forces-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -Scanning dependencies of target utility-test /usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfitting.cpp -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests/hashedmap.cpp +/usr/bin/make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/alignedallocator.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfitting.cpp Scanning dependencies of target ewald-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmebsplinetest.cpp +Scanning dependencies of target mdlib-test +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/calc_verletbuf.cpp /usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fft/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fft/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color= @@ -57755,21 +57784,15 @@ make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fft/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/fft.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fft/tests/fft.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs_d.so.5.0.0 ../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../lib/libgtest.so -lpthread -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/trajectorycomparison.cpp -[ 69%] Built target testutils-mpi-test /usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp Scanning dependencies of target gpu_utils-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/gputest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/trajectoryreader.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/trajectoryreader.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmegathertest.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' @@ -57782,30 +57805,13 @@ /usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/hardware/tests/hardwaretopology.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfittingoptions.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constr.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constr.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs_d.so.5.0.0 ../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../lib/libgtest.so -lpthread cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/clfftinitializer.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/testasserts_tests.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests/localatomsetmanager.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/arrayref.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfittingamplitudelookup.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/cmake -P CMakeFiles/onlinehelp-test-shared.dir/cmake_clean_target.cmake -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/hostallocator.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test-shared.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../../../lib/libonlinehelp-test-shared.a CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -/usr/bin/ranlib ../../../../lib/libonlinehelp-test-shared.a -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 69%] Built target onlinehelp-test-shared -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/xvgtest_tests.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 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-fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmesolvetest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/moduletest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constr.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constr.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 69%] Built target fft-test +[ 69%] Built target testutils-mpi-test /usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= @@ -57814,12 +57820,19 @@ /usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/arrayrefwithpadding.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constrtestdata.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fft/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast 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-fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfittingoptions.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/hostallocator.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/devicetransfers.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests/localatomsetmanager.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/cmake -P CMakeFiles/onlinehelp-test-shared.dir/cmake_clean_target.cmake +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test-shared.dir/link.txt --verbose=1 +/usr/bin/ar qc ../../../../lib/libonlinehelp-test-shared.a CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o +/usr/bin/ranlib ../../../../lib/libonlinehelp-test-shared.a make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 69%] Built target domdec-test +[ 69%] Built target onlinehelp-test-shared /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= @@ -57828,18 +57841,6 @@ /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constrtestrunners.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/ebin.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/ebin.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/bitmask32.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/energyoutput.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/cmake -P CMakeFiles/mdrun_test_infrastructure.dir/cmake_clean_target.cmake -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun_test_infrastructure.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../../../lib/libmdrun_test_infrastructure.a CMakeFiles/mdrun_test_infrastructure.dir/energyreader.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/energycomparison.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/mdmodulenotification.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/trajectoryreader.cpp.o -/usr/bin/ranlib ../../../../lib/libmdrun_test_infrastructure.a -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmesplinespreadtest.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 69%] Built target mdrun_test_infrastructure /usr/bin/make -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/DependInfo.cmake --color= @@ -57848,12 +57849,13 @@ /usr/bin/make -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/accessor_policy.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs_d.so.5.0.0 ../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/terminationhelper.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constrtestdata.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmegathertest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 70%] Built target hardware-test +[ 69%] Built target fft-test /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color= @@ -57862,41 +57864,48 @@ /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/helpformat.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/trajectorycomparison.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extents.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/extents.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/trajectoryreader.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/trajectoryreader.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 71%] Built target testutils-test +[ 69%] Built target domdec-test /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake --color= +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +[ 70%] Built target hardware-test +/usr/bin/make -f src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build.make src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/pbcutil/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pbcutil/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/DependInfo.cmake --color= Scanning dependencies of target options-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/abstractoptionstorage.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/expanded.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/expanded.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/leapfrog.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/leapfrogtestdata.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/bitmask64.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extents.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/extents.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/helpmanager.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/cmake -P CMakeFiles/mdrunutility-test-shared.dir/cmake_clean_target.cmake -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied_forces-test.dir/link.txt --verbose=1 -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test-shared.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied_forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -/usr/bin/ar qc ../../../../lib/libmdrunutility-test-shared.a CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -/usr/bin/ranlib ../../../../lib/libmdrunutility-test-shared.a -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 71%] Built target mdrunutility-test-shared -/usr/bin/make -f src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build.make src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/pbcutil/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pbcutil/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/DependInfo.cmake --color= Scanning dependencies of target pbcutil-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build.make src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/pbc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/pbcutil/tests/pbc.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/helpmanager.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constrtestrunners.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs_d.so.5.0.0 ../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extensions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/extensions.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/arrayref.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/cmake -P CMakeFiles/mdrunutility-test-shared.dir/cmake_clean_target.cmake +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test-shared.dir/link.txt --verbose=1 +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/bitmask32.cpp +/usr/bin/ar qc ../../../../lib/libmdrunutility-test-shared.a CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o +/usr/bin/ranlib ../../../../lib/libmdrunutility-test-shared.a make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/bitmask128.cpp -[ 72%] Built target applied_forces-test +[ 70%] Built target mdrunutility-test-shared /usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake --color= @@ -57905,21 +57914,9 @@ /usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/exponentialdistribution.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/cstringutil.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/cstringutil.cpp cd 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CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/pbcutil/tests/pbcenums.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/coordinatetransformation.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extensions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/extensions.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/leapfrogtestrunners.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settle.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/defaultinitializationallocator.cpp -cd 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/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/enumerationhelpers.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settletestdata.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 72%] Built target pbcutil-test +[ 71%] Built target testutils-test /usr/bin/make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/restraint/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/restraint/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake --color= @@ -57928,37 +57925,33 @@ /usr/bin/make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/restraintpotential-test.dir/manager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/restraint/tests/manager.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settletestrunners.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" 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/build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmetestcommon.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/simulationsignal.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/updategroups.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" 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/build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/keyvaluetreeserializer.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/keyvaluetreetransform.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/coordinatetransformation.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/ebin.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/ebin.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/cmake -P CMakeFiles/mdrun_test_infrastructure.dir/cmake_clean_target.cmake +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun_test_infrastructure.dir/link.txt --verbose=1 +/usr/bin/ar qc ../../../../lib/libmdrun_test_infrastructure.a CMakeFiles/mdrun_test_infrastructure.dir/energyreader.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/energycomparison.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/mdmodulenotification.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/trajectoryreader.cpp.o +/usr/bin/ranlib ../../../../lib/libmdrun_test_infrastructure.a make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 72%] Built target onlinehelp-test +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/energyoutput.cpp +[ 71%] Built target mdrun_test_infrastructure /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/tables/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tables/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake --color= -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 72%] Built target restraintpotential-test Scanning dependencies of target table-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build -/usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tables/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/tables/tests/splinetable.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfittingamplitudelookup.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pbcutil/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pbcutil-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pbcutil-test.dir/pbc.cpp.o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pbcutil-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +[ 71%] Built target restraintpotential-test +/usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/taskassignment/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/taskassignment/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake --color= Scanning dependencies of target taskassignment-test @@ -57966,40 +57959,47 @@ /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/taskassignment/tests/usergpuids.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/logger.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/logger.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/filenameoption.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +[ 71%] Built target pbcutil-test +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/bitmask64.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/helpwritercontext.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/layouts.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/layouts.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/expanded.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/expanded.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/gammadistribution.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/electricfield.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/bitmask128.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/mdspan.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/mdspan.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/updategroupscog.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/testhardwarecontexts.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/normaldistribution.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +[ 71%] Built target onlinehelp-test /usr/bin/make -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/topology/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/DependInfo.cmake --color= Scanning dependencies of target topology-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmesolvetest.cpp make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/exclusionblocks.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests/exclusionblocks.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/mutex.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/mutex.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfit.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/densityfit.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/cstringutil.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/cstringutil.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/normaldistribution.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/defaultinitializationallocator.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/mtop.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests/mtop.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/path.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/path.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/constr.cpp.o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o CMakeFiles/mdlib-test.dir/ebin.cpp.o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o CMakeFiles/mdlib-test.dir/expanded.cpp.o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/physicalnodecommunicator.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 74%] Built target mdlib-test +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/leapfrog.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/enumerationhelpers.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/filenameoption.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/dofit.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/dofit.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/applied_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied_forces-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied_forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/fixedcapacityvector.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/symtab.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests/symtab.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 74%] Built target ewald-test +[ 72%] Built target applied_forces-test /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/pulling/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pulling/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake --color= Scanning dependencies of target pull-test @@ -58007,20 +58007,10 @@ /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/filenameoptionmanager.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/stringutil.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/textreader.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/seed.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/seed.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/devicetransfers.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/textwriter.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/tabulatednormaldistribution.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/typetraits.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 74%] Built target taskassignment-test +[ 72%] Built target taskassignment-test /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/awh/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake --color= @@ -58029,40 +58019,48 @@ /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/bias.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests/bias.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/exponentialmovingaverage.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/leapfrogtestdata.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/seed.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/seed.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/inmemoryserializer.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/leapfrogtestrunners.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/keyvaluetreeserializer.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/tabulatednormaldistribution.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o 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/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmesplinespreadtest.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 74%] Built target pull-test +[ 72%] Built target pull-test /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settle.cpp Scanning dependencies of target simd-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/bootstrap_loadstore.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/base.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/base.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/threefry.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/threefry.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settletestdata.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/keyvaluetreetransform.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/topology/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/topology-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/topology-test.dir/exclusionblocks.cpp.o CMakeFiles/topology-test.dir/mtop.cpp.o CMakeFiles/topology-test.dir/symtab.cpp.o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/topology-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 74%] Built target gpu_utils-test +[ 74%] Built target topology-test /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/compat/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake --color= +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' Scanning dependencies of target compat-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +[ 74%] Built target gpu_utils-test cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -Wno-unused-member-function -o CMakeFiles/compat-test.dir/optional.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests/optional.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/functions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/functions.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/gausstransform.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/gausstransform.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/topology/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/topology-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/topology-test.dir/exclusionblocks.cpp.o CMakeFiles/topology-test.dir/mtop.cpp.o CMakeFiles/topology-test.dir/symtab.cpp.o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/topology-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 75%] Built target topology-test /usr/bin/make -f src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build.make src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxana/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/DependInfo.cmake --color= @@ -58071,46 +58069,67 @@ /usr/bin/make -f src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build.make src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast 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-fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_floatingpoint.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfittingforce.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/densityfittingforce.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/base.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/base.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/exponentialmovingaverage.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settletestrunners.cpp +cd 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CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security 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/build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_floatingpoint_util.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src 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/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/matrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/matrix.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxana/tests/gmx_mindist.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/logger.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/logger.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/mutex.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/mutex.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/shake.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests/biasstate.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/uniformrealdistribution.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +[ 74%] Built target table-test /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/option.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/option.cpp Scanning dependencies of target pdb2gmx3-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=1 -DCHARMM=1 -DGMX_DOUBLE=1 -DGROMOS=0 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/pdb2gmx.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/simulationsignal.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/path.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/path.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/threefry.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/threefry.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/optionsassigner.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxana/tests/gmx_mindist.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/functions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/functions.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/physicalnodecommunicator.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_floatingpoint.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/updategroups.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/grid.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests/grid.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdspan/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdspan-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o CMakeFiles/mdspan-test.dir/extents.cpp.o CMakeFiles/mdspan-test.dir/extensions.cpp.o CMakeFiles/mdspan-test.dir/layouts.cpp.o CMakeFiles/mdspan-test.dir/mdspan.cpp.o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdspan-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/updategroupscog.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +[ 74%] Built target mdspan-test +/usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/DependInfo.cmake --color= Scanning dependencies of target pdb2gmx2-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=1 -DGROMOS=1 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/pdb2gmx.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tables/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_vector_operations.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 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CMakeFiles/mdspan-test.dir/extents.cpp.o CMakeFiles/mdspan-test.dir/extensions.cpp.o CMakeFiles/mdspan-test.dir/layouts.cpp.o CMakeFiles/mdspan-test.dir/mdspan.cpp.o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdspan-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests/pointers.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/multidimarray.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/multidimarray.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/stringutil.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/textreader.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmetestcommon.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxana/tests/gmx_msd.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=1 -DCHARMM=1 -DGMX_DOUBLE=1 -DGROMOS=0 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/uniformintdistribution.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx3-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pdb2gmx3-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/testhardwarecontexts.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/textwriter.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 75%] Built target table-test +[ 74%] Built target pdb2gmx3-test /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/DependInfo.cmake --color= @@ -58119,27 +58138,30 @@ /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=1 -DGROMOS=0 -DHAVE_CONFIG_H -DOPLSAA=1 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/pdb2gmx.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 75%] Built target mdspan-test +[ 74%] Built target awh-test /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxana/tests/gmx_msd.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/typetraits.cpp Scanning dependencies of target gmxpreprocess-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/editconf.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/paddedvector.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_math.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/vectypes.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/grid.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests/grid.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_memory.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/constr.cpp.o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o CMakeFiles/mdlib-test.dir/ebin.cpp.o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o CMakeFiles/mdlib-test.dir/expanded.cpp.o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/gmxana-test.dir/entropy.cpp.o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxana-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/gausstransform.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/gausstransform.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 76%] Built target random-test +[ 75%] Built target gmxana-test /usr/bin/make -f src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build.make src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/correlationfunctions/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/correlationfunctions/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/DependInfo.cmake --color= @@ -58148,11 +58170,8 @@ /usr/bin/make -f src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build.make src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/autocorr.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/correlationfunctions/tests/autocorr.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/string_view.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests/string_view.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxana-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/gmxana-test.dir/entropy.cpp.o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxana-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 77%] Built target gmxana-test +[ 76%] Built target mdlib-test /usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/DependInfo.cmake --color= @@ -58161,16 +58180,11 @@ /usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests/datatest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/genconf.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=1 -DCHARMM=1 -DGMX_DOUBLE=1 -DGROMOS=0 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/genion.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/correlationfunctions/tests/manyautocorrelation.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests/pointers.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/uniformrealdistribution.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 77%] Built target awh-test +[ 76%] Built target ewald-test /usr/bin/make -f src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/build.make src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/DependInfo.cmake --color= @@ -58179,13 +58193,6 @@ /usr/bin/make -f src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/build.make src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/builder.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/builder.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/outputadaptercontainer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/outputadaptercontainer.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx3-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pdb2gmx3-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=1 -DGROMOS=1 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 77%] Built target pdb2gmx3-test /usr/bin/make -f src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build.make src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/energyanalysis/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/energyanalysis/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/DependInfo.cmake --color= @@ -58194,16 +58201,16 @@ /usr/bin/make -f src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build.make src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/energyanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/energyanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/energyanalysis/tests/legacyenergy.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests/mock_datamodule.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/genrestr.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/genrestr.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/gpp_atomtype.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_floatingpoint_util.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/genconf.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=1 -DGROMOS=1 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/string_view.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests/string_view.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/correlationfunctions/tests/manyautocorrelation.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx2-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pdb2gmx2-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/correlationfunctions/tests/correlationdataset.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/repeatingsection.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/gpp_bond_atomtype.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/energyanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/energyanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 78%] Built target pdb2gmx2-test +[ 77%] Built target pdb2gmx2-test /usr/bin/make -f src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build.make src/gromacs/tools/tests/CMakeFiles/tool-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/tools/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tools/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tools/tests/CMakeFiles/tool-test.dir/DependInfo.cmake --color= @@ -58212,16 +58219,22 @@ /usr/bin/make -f src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build.make src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tools/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/tool-test.dir/dump.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/tools/tests/dump.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/outputadapters.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/outputadapters.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/genion.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests/mock_datamodule.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/correlationfunctions/tests/correlationdataset.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/repeatingsection.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/timeunitmanager.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/treesupport.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/energyanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/energyanalysis-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/energyanalysis-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/expfit.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/correlationfunctions/tests/expfit.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=1 -DGROMOS=0 -DHAVE_CONFIG_H -DOPLSAA=1 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/insert_molecules.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/energyanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/energyanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx1-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pdb2gmx1-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tools/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/tool-test.dir/report_methods.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/tools/tests/report_methods.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 78%] Built target pdb2gmx1-test +[ 78%] Built target energyanalysis-test /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake --color= @@ -58230,10 +58243,9 @@ /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/confio.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/energyanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/energyanalysis-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/energyanalysis-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/outputadaptercontainer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/outputadaptercontainer.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 80%] Built target energyanalysis-test +[ 80%] Built target random-test /usr/bin/make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/DependInfo.cmake --color= @@ -58242,16 +58254,11 @@ /usr/bin/make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/indexutil.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/indexutil.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/readir.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 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-I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_integer.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/topdirs.cpp -cd 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-std=c++14 -o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/requirements.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/requirements.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx1-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pdb2gmx1-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/genrestr.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/genrestr.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 82%] Built target utility-test +[ 80%] Built target pdb2gmx1-test /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/DependInfo.cmake --color= @@ -58260,30 +58267,25 @@ /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-modules-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-modules-test.dir/densityfittingmodule.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/densityfittingmodule.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfittingforce.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/densityfittingforce.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tools/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/tool-test.dir/trjconv.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/tools/tests/trjconv.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/outputadapters.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/outputadapters.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/gpp_atomtype.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_vector_operations.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/correlations-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/correlations-test.dir/autocorr.cpp.o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o CMakeFiles/correlations-test.dir/expfit.cpp.o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/correlations-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 82%] Built target correlations-test /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/DependInfo.cmake --color= Scanning dependencies of target mdrun-tpi-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/build -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tools/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/tool-test.dir/trjconv.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/tools/tests/trjconv.cpp make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/tpitest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/timeunitmanager.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/treesupport.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/filemd5.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxpreprocess-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o CMakeFiles/gmxpreprocess-test.dir/genrestr.cpp.o CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxpreprocess-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4_floatingpoint.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-modules-test.dir/interactiveMD.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/interactiveMD.cpp -[ 83%] Built target gmxpreprocess-test +[ 80%] Built target correlations-test /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/DependInfo.cmake --color= @@ -58292,24 +58294,47 @@ /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/dispersion_correction.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/dispersion_correction.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4_vector_operations.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/setatoms.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/setatoms.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4_math.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_math.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/filemd5.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-modules-test.dir/interactiveMD.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/interactiveMD.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/invertmatrix.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/utility-test.dir/alignedallocator.cpp.o CMakeFiles/utility-test.dir/arrayref.cpp.o CMakeFiles/utility-test.dir/bitmask32.cpp.o CMakeFiles/utility-test.dir/bitmask64.cpp.o CMakeFiles/utility-test.dir/bitmask128.cpp.o CMakeFiles/utility-test.dir/cstringutil.cpp.o CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o CMakeFiles/utility-test.dir/logger.cpp.o CMakeFiles/utility-test.dir/mutex.cpp.o CMakeFiles/utility-test.dir/path.cpp.o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o CMakeFiles/utility-test.dir/stringutil.cpp.o CMakeFiles/utility-test.dir/textreader.cpp.o CMakeFiles/utility-test.dir/textwriter.cpp.o CMakeFiles/utility-test.dir/typetraits.cpp.o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/gpp_bond_atomtype.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/mrcserializer.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tools/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/orires.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/orires.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/pmetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/pmetest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/nbsearch.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/nbsearch.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/cmake -P CMakeFiles/analysisdata-test-shared.dir/cmake_clean_target.cmake +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysisdata-test-shared.dir/link.txt --verbose=1 +[ 82%] Built target utility-test /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/DependInfo.cmake --color= +/usr/bin/ar qc ../../../../lib/libanalysisdata-test-shared.a CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o +/usr/bin/ranlib ../../../../lib/libanalysisdata-test-shared.a Scanning dependencies of target mdrun-output-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-output-test.dir/compressed_x_output.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/compressed_x_output.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/scalar.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/mrcserializer.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/orires.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/orires.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/nbsearch.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/nbsearch.cpp -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/compat-test.dir/optional.cpp.o CMakeFiles/compat-test.dir/pointers.cpp.o CMakeFiles/compat-test.dir/string_view.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +[ 82%] Built target analysisdata-test-shared +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/simulator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/simulator.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/mimic.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tools/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/tool-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/tool-test.dir/dump.cpp.o CMakeFiles/tool-test.dir/report_methods.cpp.o CMakeFiles/tool-test.dir/trjconv.cpp.o CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/tool-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/swapcoords.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/swapcoords.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +[ 83%] Built target options-test +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-output-test.dir/helpwriting.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/helpwriting.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/matrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/matrix.cpp +[ 83%] Built target tool-test /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/DependInfo.cmake --color= @@ -58318,43 +58343,46 @@ /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/minimize.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/minimize.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-tpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-output-test.dir/outputfiles.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/outputfiles.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/insert_molecules.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-modules-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/tabulated_bonded_interactions.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/mrcdensitymap.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-tpi-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o CMakeFiles/mdrun-tpi-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-tpi-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_memory.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 83%] Built target compat-test -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tools/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +[ 84%] Built target mdrun-tpi-test /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/DependInfo.cmake --color= Scanning dependencies of target mdrun-mpi-test +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-modules-test.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/domain_decomposition.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/scalar_util.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-tpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/pmetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/pmetest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tools/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/tool-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/tool-test.dir/dump.cpp.o CMakeFiles/tool-test.dir/report_methods.cpp.o CMakeFiles/tool-test.dir/trjconv.cpp.o CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/tool-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/setbothtime.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/mimic.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/minimize.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/minimize.cpp +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-modules-test.dir/densityfittingmodule.cpp.o CMakeFiles/mdrun-modules-test.dir/interactiveMD.cpp.o CMakeFiles/mdrun-modules-test.dir/mimic.cpp.o CMakeFiles/mdrun-modules-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-modules-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/trajectory_writing.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 83%] Built target tool-test +[ 84%] Built target mdrun-modules-test /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-tpi-test.dir/link.txt --verbose=1 +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/readir.cpp Scanning dependencies of target mdrun-io-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/build -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o CMakeFiles/mdrun-tpi-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-tpi-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-io-test.dir/exactcontinuation.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/exactcontinuation.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/cmake -P CMakeFiles/analysisdata-test-shared.dir/cmake_clean_target.cmake -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysisdata-test-shared.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../../../lib/libanalysisdata-test-shared.a CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -/usr/bin/ranlib ../../../../lib/libanalysisdata-test-shared.a +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/compat-test.dir/optional.cpp.o CMakeFiles/compat-test.dir/pointers.cpp.o CMakeFiles/compat-test.dir/string_view.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/minimize.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/minimize.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 83%] Built target analysisdata-test-shared +[ 84%] Built target compat-test /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/DependInfo.cmake --color= @@ -58363,8 +58391,19 @@ /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-coordination-test.dir/periodicactions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/periodicactions.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/mrcdensitymapheader.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/multidimarray.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/multidimarray.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/poscalc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/poscalc.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/solvate.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/readinp.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_integer.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-output-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-test.dir/dispersion_correction.cpp.o CMakeFiles/mdrun-test.dir/orires.cpp.o CMakeFiles/mdrun-test.dir/pmetest.cpp.o CMakeFiles/mdrun-test.dir/simulator.cpp.o CMakeFiles/mdrun-test.dir/swapcoords.cpp.o CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/nonbonded_bench.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/topdirs.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 84%] Built target mdrun-tpi-test +[ 84%] Built target mdrun-test /usr/bin/make -f src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/build.make src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/DependInfo.cmake --color= @@ -58373,23 +58412,11 @@ 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/build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/restraint.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/restraint.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem 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-I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-output-test.dir/helpwriting.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/helpwriting.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/setstarttime.cpp 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-fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-output-test.dir/outputfiles.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/outputfiles.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/simulator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/simulator.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" 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CMakeFiles/mdrun-modules-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-modules-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/testmodule.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/testmodule.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/paddedvector.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-output-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-output-test.dir/compressed_x_output.cpp.o CMakeFiles/mdrun-output-test.dir/helpwriting.cpp.o CMakeFiles/mdrun-output-test.dir/outputfiles.cpp.o CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o CMakeFiles/mdrun-output-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-output-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 85%] Built target options-test +[ 85%] Built target mdrun-output-test /usr/bin/make -f src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/build.make src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/DependInfo.cmake --color= @@ -58398,99 +58425,128 @@ /usr/bin/make -f src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/build.make src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/restraint.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/restraint.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectioncollection.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/selectioncollection.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/fileioxdrserializer.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/tngio.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/normalmodes.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/normalmodes.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/vectypes.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxpreprocess-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o CMakeFiles/gmxpreprocess-test.dir/genrestr.cpp.o CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxpreprocess-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4_floatingpoint.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/status.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/status.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/requirements.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/requirements.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 85%] Built target mdrun-modules-test +[ 87%] Built target gmxpreprocess-test /usr/bin/make -f src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/build.make src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/api/cpp/workflow/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/workflow/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o CMakeFiles/math-test.dir/densityfit.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/gausstransform.cpp.o CMakeFiles/math-test.dir/densityfittingforce.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/matrix.cpp.o CMakeFiles/math-test.dir/multidimarray.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread Scanning dependencies of target workflow-details-mpi-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/build.make src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/workflow/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/workflow/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/workflow/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/src/api/cpp -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/workflow-details-mpi-test.dir/workflow.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/workflow/tests/workflow.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/setatoms.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/setatoms.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-coordination-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4_vector_operations.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4_math.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/filemd5.cpp.o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/status.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/status.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/mimic.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/system.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/system.cpp -[ 87%] Built target math-test +[ 88%] Built target fileio-test +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/rerun.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/scalar.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-mpi-coordination-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-mpi-coordination-test.dir/periodicactions.cpp.o CMakeFiles/mdrun-mpi-coordination-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-mpi-coordination-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-io-test.dir/grompp.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/grompp.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/scalar_util.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +[ 88%] Built target mdrun-mpi-coordination-test /usr/bin/make -f src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/build.make src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/api/cpp/workflow/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/workflow/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast 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-I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/src/api/cpp -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/workflow-details-test.dir/workflow.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/workflow/tests/workflow.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/setbothtime.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/workflow/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/workflow/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/workflow/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/src/api/cpp -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/workflow-details-mpi-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-coordination-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/mrcdensitymapheader.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/nonbonded_bench.cpp -cd 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/build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/status.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/status.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/swapcoords.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/swapcoords.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/version.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/version.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/setstarttime.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/workflow/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/workflow-details-mpi-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/workflow-details-mpi-test.dir/workflow.cpp.o CMakeFiles/workflow-details-mpi-test.dir/__/__/__/__/testutils/unittest_main.cpp.o ../../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../../bin/workflow-details-mpi-test ../../../../../lib/libtestutils.a ../../../../../lib/libgmxapi_d.so.0.1.0 ../../../../../lib/libmdrun_test_infrastructure.a ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../../lib/libgmock.so ../../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-io-test.dir/initialconstraints.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/initialconstraints.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/multisim.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/version.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/version.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 88%] Built target coordinateio-test +[ 88%] Built target workflow-details-mpi-test /usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/version.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/version.cpp Scanning dependencies of target commandline-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/system.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/system.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/normalmodes.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/normalmodes.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/version.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/version.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/workflow/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/workflow/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/workflow/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/src/api/cpp -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/workflow-details-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/scalar_math.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/settimestep.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/settimestep.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/runner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/runner.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/workflow/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/workflow-details-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/workflow-details-test.dir/workflow.cpp.o CMakeFiles/workflow-details-test.dir/__/__/__/__/testutils/unittest_main.cpp.o ../../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../../bin/workflow-details-test ../../../../../lib/libtestutils.a ../../../../../lib/libgmxapi_d.so.0.1.0 ../../../../../lib/libmdrun_test_infrastructure.a ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../../lib/libgmock.so ../../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/runner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/runner.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/stopsignaler.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/stopsignaler.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/stopsignaler.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/stopsignaler.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 89%] Built target simd-test +[ 89%] Built target workflow-details-test /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/workflow/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/workflow-details-mpi-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/workflow-details-mpi-test.dir/workflow.cpp.o CMakeFiles/workflow-details-mpi-test.dir/__/__/__/__/testutils/unittest_main.cpp.o ../../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../../bin/workflow-details-mpi-test ../../../../../lib/libtestutils.a ../../../../../lib/libgmxapi_d.so.0.1.0 ../../../../../lib/libmdrun_test_infrastructure.a ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../../lib/libgmock.so ../../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/tabulated_bonded_interactions.cpp Scanning dependencies of target mdrunutility-mpi-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests/threadaffinity_mpi.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/mimic.cpp -cd 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/build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/simple_mdrun.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/simple_mdrun.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/multisimtest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/testmodule.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/coordinateio/tests/testmodule.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-io-test.dir/termination.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/termination.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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-DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectionoption.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/selectionoption.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/pmetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/pmetest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/replicaexchange.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/coordinateio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/coordinateio-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/coordinateio-test.dir/builder.cpp.o CMakeFiles/coordinateio-test.dir/outputadaptercontainer.cpp.o CMakeFiles/coordinateio-test.dir/outputadapters.cpp.o CMakeFiles/coordinateio-test.dir/requirements.cpp.o CMakeFiles/coordinateio-test.dir/setatoms.cpp.o CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o CMakeFiles/coordinateio-test.dir/settimestep.cpp.o CMakeFiles/coordinateio-test.dir/testmodule.cpp.o CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/coordinateio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 89%] Built target workflow-details-mpi-test +[ 90%] Built target simd-test /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp Scanning dependencies of target mdrunutility-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests/threadaffinity.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-io-test.dir/grompp.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/grompp.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/workflow/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/workflow/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/workflow/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/src/api/cpp -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/workflow-details-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-mpi-coordination-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-mpi-coordination-test.dir/periodicactions.cpp.o CMakeFiles/mdrun-mpi-coordination-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-mpi-coordination-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/runner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/runner.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/trajectory_writing.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectioncollection.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/selectioncollection.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/stopsignaler.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/stopsignaler.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 89%] Built target mdrun-mpi-coordination-test -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-io-test.dir/initialconstraints.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/initialconstraints.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/workflow/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/workflow-details-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/workflow-details-test.dir/workflow.cpp.o CMakeFiles/workflow-details-test.dir/__/__/__/__/testutils/unittest_main.cpp.o ../../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../../bin/workflow-details-test ../../../../../lib/libtestutils.a ../../../../../lib/libgmxapi_d.so.0.1.0 ../../../../../lib/libmdrun_test_infrastructure.a ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../../lib/libgmock.so ../../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/runner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/api/cpp/tests/runner.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/readinp.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 90%] Built target workflow-details-test +[ 91%] Built target coordinateio-test /usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/DependInfo.cmake --color= @@ -58499,13 +58555,12 @@ /usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests/analysisdata.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-io-test.dir/termination.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/termination.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/multisim.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-test.dir/dispersion_correction.cpp.o CMakeFiles/mdrun-test.dir/orires.cpp.o CMakeFiles/mdrun-test.dir/pmetest.cpp.o CMakeFiles/mdrun-test.dir/simulator.cpp.o CMakeFiles/mdrun-test.dir/swapcoords.cpp.o CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxapi-mpi-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/gmxapi-mpi-test.dir/restraint.cpp.o CMakeFiles/gmxapi-mpi-test.dir/status.cpp.o CMakeFiles/gmxapi-mpi-test.dir/system.cpp.o CMakeFiles/gmxapi-mpi-test.dir/version.cpp.o CMakeFiles/gmxapi-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/gmxapi-mpi-test.dir/runner.cpp.o CMakeFiles/gmxapi-mpi-test.dir/stopsignaler.cpp.o ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/gmxapi-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgmxapi_d.so.0.1.0 ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxapi-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/gmxapi-test.dir/restraint.cpp.o CMakeFiles/gmxapi-test.dir/status.cpp.o CMakeFiles/gmxapi-test.dir/system.cpp.o CMakeFiles/gmxapi-test.dir/version.cpp.o CMakeFiles/gmxapi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/gmxapi-test.dir/runner.cpp.o CMakeFiles/gmxapi-test.dir/stopsignaler.cpp.o ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/gmxapi-test ../../../../lib/libtestutils.a ../../../../lib/libgmxapi_d.so.0.1.0 ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 90%] Built target mdrun-test +[ 91%] Built target gmxapi-mpi-test /usr/bin/make -f src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build.make src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/DependInfo.cmake --color= @@ -58514,104 +58569,79 @@ /usr/bin/make -f src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build.make src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/moduletest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-output-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +[ 92%] Built target gmxapi-test +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/arraydata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests/arraydata.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlineparser.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/fileioxdrserializer.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/tngio.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/tests -I/build/reproducible-path/gromacs-2020.6/src/api/cpp/include -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp 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-Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxapi-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/gmxapi-test.dir/restraint.cpp.o CMakeFiles/gmxapi-test.dir/status.cpp.o CMakeFiles/gmxapi-test.dir/system.cpp.o CMakeFiles/gmxapi-test.dir/version.cpp.o CMakeFiles/gmxapi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/gmxapi-test.dir/runner.cpp.o CMakeFiles/gmxapi-test.dir/stopsignaler.cpp.o ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/gmxapi-test ../../../../lib/libtestutils.a ../../../../lib/libgmxapi_d.so.0.1.0 ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/toputils.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/toputils.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/average.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests/average.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-output-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-output-test.dir/compressed_x_output.cpp.o CMakeFiles/mdrun-output-test.dir/helpwriting.cpp.o CMakeFiles/mdrun-output-test.dir/outputfiles.cpp.o CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o CMakeFiles/mdrun-output-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-output-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 91%] Built target gmxapi-test -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/rerun.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 91%] Built target mdrunutility-mpi-test cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/clustsize.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/multisimtest.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-io-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -[ 92%] Built target mdrun-output-test -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/pmetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/pmetest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/replicaexchange.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/cmdlinerunner.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/simple_mdrun.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/tests/simple_mdrun.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/filemd5.cpp.o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread +[ 92%] Built target mdrunutility-mpi-test +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/histogram.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests/histogram.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/lifetime.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests/lifetime.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-non-integrator-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-non-integrator-test.dir/minimize.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/normalmodes.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/simple_mdrun.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-non-integrator-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-mpi-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o CMakeFiles/mdrun-mpi-test.dir/minimize.cpp.o CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o CMakeFiles/mdrun-mpi-test.dir/pmetest.cpp.o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -[ 94%] Built target fileio-test -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/arraydata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests/arraydata.cpp +[ 92%] Built target mdrun-non-integrator-test +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 95%] Built target mdrunutility-test -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/angle.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-io-test.dir/link.txt --verbose=1 +[ 94%] Built target mdrun-mpi-test +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/cmdlinerunner.cpp /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-io-test.dir/exactcontinuation.cpp.o CMakeFiles/mdrun-io-test.dir/grompp.cpp.o CMakeFiles/mdrun-io-test.dir/initialconstraints.cpp.o CMakeFiles/mdrun-io-test.dir/termination.cpp.o CMakeFiles/mdrun-io-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-io-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/angle.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 96%] Built target mdrun-io-test -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp +[ 95%] Built target mdrun-io-test cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/convert_trj.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/convert_trj.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/average.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests/average.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/distance.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/extract_cluster.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/extract_cluster.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/filenm.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/filenm.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +[ 96%] Built target mdrunutility-test +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/pargs.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/freevolume.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 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-fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/pairdist.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/api/cpp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxapi-mpi-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/gmxapi-mpi-test.dir/restraint.cpp.o CMakeFiles/gmxapi-mpi-test.dir/status.cpp.o CMakeFiles/gmxapi-mpi-test.dir/system.cpp.o CMakeFiles/gmxapi-mpi-test.dir/version.cpp.o CMakeFiles/gmxapi-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/gmxapi-mpi-test.dir/runner.cpp.o CMakeFiles/gmxapi-mpi-test.dir/stopsignaler.cpp.o ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/gmxapi-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgmxapi_d.so.0.1.0 ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/rdf.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/lifetime.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/analysisdata/tests/lifetime.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-mpi-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o CMakeFiles/mdrun-mpi-test.dir/minimize.cpp.o CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o CMakeFiles/mdrun-mpi-test.dir/pmetest.cpp.o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/sasa.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 96%] Built target gmxapi-mpi-test -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/select.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 97%] Built target mdrun-mpi-test +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o CMakeFiles/math-test.dir/densityfit.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/gausstransform.cpp.o CMakeFiles/math-test.dir/densityfittingforce.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/matrix.cpp.o CMakeFiles/math-test.dir/multidimarray.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlineparser.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/topologyinformation.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/trajectory.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +[ 97%] Built target math-test cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/unionfind.cpp cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp 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-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectionoption.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/selectionoption.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/filenm.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/filenm.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/toputils.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/toputils.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/pargs.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/basic-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-non-integrator-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrun-non-integrator-test.dir/minimize.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/normalmodes.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/simple_mdrun.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-non-integrator-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 97%] Built target mdrun-non-integrator-test -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysisdata-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o CMakeFiles/analysisdata-test.dir/arraydata.cpp.o CMakeFiles/analysisdata-test.dir/average.cpp.o CMakeFiles/analysisdata-test.dir/histogram.cpp.o CMakeFiles/analysisdata-test.dir/lifetime.cpp.o CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/analysisdata-test ../../../../lib/libtestutils.a ../../../../lib/libanalysisdata-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 97%] Built target analysisdata-test cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/filenm.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/trajectoryanalysis-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o CMakeFiles/trajectoryanalysis-test.dir/convert_trj.cpp.o CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o CMakeFiles/trajectoryanalysis-test.dir/extract_cluster.cpp.o CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/trajectoryanalysis-test ../../../../lib/libtestutils.a ../../../../lib/libanalysisdata-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' [ 98%] Built target commandline-test -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[100%] Built target trajectoryanalysis-test cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/selection-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/selection-test.dir/indexutil.cpp.o CMakeFiles/selection-test.dir/nbsearch.cpp.o CMakeFiles/selection-test.dir/poscalc.cpp.o CMakeFiles/selection-test.dir/selectioncollection.cpp.o CMakeFiles/selection-test.dir/selectionoption.cpp.o CMakeFiles/selection-test.dir/toputils.cpp.o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/selection-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.so -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[100%] Built target selection-test +[ 98%] Built target selection-test +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/trajectoryanalysis-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o CMakeFiles/trajectoryanalysis-test.dir/convert_trj.cpp.o CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o CMakeFiles/trajectoryanalysis-test.dir/extract_cluster.cpp.o CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/trajectoryanalysis-test ../../../../lib/libtestutils.a ../../../../lib/libanalysisdata-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +[100%] Built target trajectoryanalysis-test +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysisdata-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o CMakeFiles/analysisdata-test.dir/arraydata.cpp.o CMakeFiles/analysisdata-test.dir/average.cpp.o CMakeFiles/analysisdata-test.dir/histogram.cpp.o CMakeFiles/analysisdata-test.dir/lifetime.cpp.o CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/analysisdata-test ../../../../lib/libtestutils.a ../../../../lib/libanalysisdata-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +[100%] Built target analysisdata-test /usr/bin/make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/CMakeFiles/tests.dir/DependInfo.cmake --color= @@ -58649,24 +58679,24 @@ 1: [ RUN ] InteractiveTestHelperTest.ChecksSimpleSession 1: [ OK ] InteractiveTestHelperTest.ChecksSimpleSession (0 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline -1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline (1 ms) +1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline (0 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput -1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput (0 ms) +1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput 1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsIncorrectOutput -1: [ OK ] InteractiveTestHelperTest.DetectsIncorrectOutput (2 ms) +1: [ OK ] InteractiveTestHelperTest.DetectsIncorrectOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingOutput 1: [ OK ] InteractiveTestHelperTest.DetectsMissingOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingFinalOutput 1: [ OK ] InteractiveTestHelperTest.DetectsMissingFinalOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsExtraOutput -1: [ OK ] InteractiveTestHelperTest.DetectsExtraOutput (0 ms) +1: [ OK ] InteractiveTestHelperTest.DetectsExtraOutput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingInput 1: [ OK ] InteractiveTestHelperTest.DetectsMissingInput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsExtraInput -1: [ OK ] InteractiveTestHelperTest.DetectsExtraInput (1 ms) -1: [----------] 10 tests from InteractiveTestHelperTest (4 ms total) +1: [ OK ] InteractiveTestHelperTest.DetectsExtraInput (0 ms) +1: [----------] 10 tests from InteractiveTestHelperTest (2 ms total) 1: 1: [----------] 34 tests from ReferenceDataTest 1: [ RUN ] ReferenceDataTest.HandlesSimpleData @@ -58678,15 +58708,15 @@ 1: [ RUN ] ReferenceDataTest.HandlesStringBlockData 1: [ OK ] ReferenceDataTest.HandlesStringBlockData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVectorData -1: [ OK ] ReferenceDataTest.HandlesVectorData (0 ms) +1: [ OK ] ReferenceDataTest.HandlesVectorData (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceData 1: [ OK ] ReferenceDataTest.HandlesSequenceData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceOfCustomData 1: [ OK ] ReferenceDataTest.HandlesSequenceOfCustomData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesIncorrectData -1: [ OK ] ReferenceDataTest.HandlesIncorrectData (1 ms) +1: [ OK ] ReferenceDataTest.HandlesIncorrectData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesIncorrectDataType -1: [ OK ] ReferenceDataTest.HandlesIncorrectDataType (0 ms) +1: [ OK ] ReferenceDataTest.HandlesIncorrectDataType (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesMissingData 1: [ OK ] ReferenceDataTest.HandlesMissingData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedData @@ -58704,9 +58734,9 @@ 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeMissingKey 1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeMissingKey (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesAnysWithIncorrectValue -1: [ OK ] ReferenceDataTest.HandlesAnysWithIncorrectValue (0 ms) +1: [ OK ] ReferenceDataTest.HandlesAnysWithIncorrectValue (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesAnysWithIncorrectType -1: [ OK ] ReferenceDataTest.HandlesAnysWithIncorrectType (1 ms) +1: [ OK ] ReferenceDataTest.HandlesAnysWithIncorrectType (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMissingReferenceDataFile 1: [ OK ] ReferenceDataTest.HandlesMissingReferenceDataFile (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSpecialCharactersInStrings @@ -58732,12 +58762,12 @@ 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges -1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges (1 ms) +1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges (5 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries (0 ms) -1: [----------] 34 tests from ReferenceDataTest (5 ms total) +1: [----------] 34 tests from ReferenceDataTest (13 ms total) 1: 1: [----------] 7 tests from FloatingPointDifferenceTest 1: [ RUN ] FloatingPointDifferenceTest.HandlesEqualValues @@ -58769,19 +58799,19 @@ 1: 1: [----------] 4 tests from XvgTests 1: [ RUN ] XvgTests.CreateFile -1: [ OK ] XvgTests.CreateFile (8 ms) +1: [ OK ] XvgTests.CreateFile (1 ms) 1: [ RUN ] XvgTests.CheckMissing 1: [ OK ] XvgTests.CheckMissing (0 ms) 1: [ RUN ] XvgTests.CheckExtra -1: [ OK ] XvgTests.CheckExtra (1 ms) +1: [ OK ] XvgTests.CheckExtra (0 ms) 1: [ RUN ] XvgTests.ReadIncorrect 1: [ OK ] XvgTests.ReadIncorrect (0 ms) -1: [----------] 4 tests from XvgTests (9 ms total) +1: [----------] 4 tests from XvgTests (1 ms total) 1: 1: [----------] Global test environment tear-down -1: [==========] 59 tests from 5 test cases ran. (18 ms total) +1: [==========] 59 tests from 5 test cases ran. (16 ms total) 1: [ PASSED ] 59 tests. - 1/54 Test #1: TestUtilsUnitTests .................. Passed 0.03 sec + 1/54 Test #1: TestUtilsUnitTests .................. Passed 0.06 sec test 2 Start 2: TestUtilsMpiUnitTests @@ -58791,13 +58821,13 @@ 2: [----------] Global test environment set-up. 2: [----------] 1 test from MpiSelfTest 2: [ RUN ] MpiSelfTest.Runs -2: [ OK ] MpiSelfTest.Runs (4 ms) -2: [----------] 1 test from MpiSelfTest (4 ms total) +2: [ OK ] MpiSelfTest.Runs (26 ms) +2: [----------] 1 test from MpiSelfTest (26 ms total) 2: 2: [----------] Global test environment tear-down -2: [==========] 1 test from 1 test case ran. (4 ms total) +2: [==========] 1 test from 1 test case ran. (26 ms total) 2: [ PASSED ] 1 test. - 2/54 Test #2: TestUtilsMpiUnitTests ............... Passed 0.02 sec + 2/54 Test #2: TestUtilsMpiUnitTests ............... Passed 0.07 sec test 3 Start 3: UtilityUnitTests @@ -58861,27 +58891,27 @@ 3: [ RUN ] AllocatorTest/4.AllocatorAlignAllocatesWithAlignment 3: [ OK ] AllocatorTest/4.AllocatorAlignAllocatesWithAlignment (0 ms) 3: [ RUN ] AllocatorTest/4.VectorAllocatesAndResizesWithAlignment -3: [ OK ] AllocatorTest/4.VectorAllocatesAndResizesWithAlignment (8 ms) +3: [ OK ] AllocatorTest/4.VectorAllocatesAndResizesWithAlignment (0 ms) 3: [ RUN ] AllocatorTest/4.VectorAllocatesAndReservesWithAlignment -3: [ OK ] AllocatorTest/4.VectorAllocatesAndReservesWithAlignment (0 ms) +3: [ OK ] AllocatorTest/4.VectorAllocatesAndReservesWithAlignment (1 ms) 3: [ RUN ] AllocatorTest/4.Move 3: [ OK ] AllocatorTest/4.Move (0 ms) 3: [ RUN ] AllocatorTest/4.StatelessAllocatorUsesNoMemory 3: [ OK ] AllocatorTest/4.StatelessAllocatorUsesNoMemory (0 ms) -3: [----------] 5 tests from AllocatorTest/4 (8 ms total) +3: [----------] 5 tests from AllocatorTest/4 (1 ms total) 3: 3: [----------] 5 tests from AllocatorTest/5, where TypeParam = gmx::Allocator, gmx::PageAlignedAllocationPolicy> 3: [ RUN ] AllocatorTest/5.AllocatorAlignAllocatesWithAlignment 3: [ OK ] AllocatorTest/5.AllocatorAlignAllocatesWithAlignment (0 ms) 3: [ RUN ] AllocatorTest/5.VectorAllocatesAndResizesWithAlignment -3: [ OK ] AllocatorTest/5.VectorAllocatesAndResizesWithAlignment (1 ms) +3: [ OK ] AllocatorTest/5.VectorAllocatesAndResizesWithAlignment (0 ms) 3: [ RUN ] AllocatorTest/5.VectorAllocatesAndReservesWithAlignment 3: [ OK ] AllocatorTest/5.VectorAllocatesAndReservesWithAlignment (0 ms) 3: [ RUN ] AllocatorTest/5.Move 3: [ OK ] AllocatorTest/5.Move (0 ms) 3: [ RUN ] AllocatorTest/5.StatelessAllocatorUsesNoMemory 3: [ OK ] AllocatorTest/5.StatelessAllocatorUsesNoMemory (0 ms) -3: [----------] 5 tests from AllocatorTest/5 (1 ms total) +3: [----------] 5 tests from AllocatorTest/5 (0 ms total) 3: 3: [----------] 1 test from AllocatorUntypedTest 3: [ RUN ] AllocatorUntypedTest.Comparison @@ -59064,7 +59094,7 @@ 3: [ OK ] ArrayRefTest/7.ConstructFromNonConstVectorWorks (0 ms) 3: [ RUN ] ArrayRefTest/7.ConstructFromStructFieldWithTemplateConstructorWorks 3: [ OK ] ArrayRefTest/7.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -3: [----------] 9 tests from ArrayRefTest/7 (0 ms total) +3: [----------] 9 tests from ArrayRefTest/7 (1 ms total) 3: 3: [----------] 9 tests from ArrayRefTest/8, where TypeParam = gmx::ArrayRef 3: [ RUN ] ArrayRefTest/8.MakeWithAssignmentWorks @@ -59355,7 +59385,7 @@ 3: [ RUN ] FixedCapacityVectorTest.EmplaceBackWorks 3: [ OK ] FixedCapacityVectorTest.EmplaceBackWorks (0 ms) 3: [ RUN ] FixedCapacityVectorTest.AtThrows -3: [ OK ] FixedCapacityVectorTest.AtThrows (0 ms) +3: [ OK ] FixedCapacityVectorTest.AtThrows (1 ms) 3: [ RUN ] FixedCapacityVectorTest.IteratorWorks 3: [ OK ] FixedCapacityVectorTest.IteratorWorks (0 ms) 3: [ RUN ] FixedCapacityVectorTest.ReverseIteratorWorks @@ -59394,9 +59424,9 @@ 3: [ RUN ] TreeValueTransformTest.SimpleTransformsCaseAndDashInsensitive 3: [ OK ] TreeValueTransformTest.SimpleTransformsCaseAndDashInsensitive (0 ms) 3: [ RUN ] TreeValueTransformTest.SimpleTransformsToObject -3: [ OK ] TreeValueTransformTest.SimpleTransformsToObject (1 ms) +3: [ OK ] TreeValueTransformTest.SimpleTransformsToObject (0 ms) 3: [ RUN ] TreeValueTransformTest.ObjectFromString -3: [ OK ] TreeValueTransformTest.ObjectFromString (0 ms) +3: [ OK ] TreeValueTransformTest.ObjectFromString (1 ms) 3: [ RUN ] TreeValueTransformTest.ObjectFromMultipleStrings 3: [ OK ] TreeValueTransformTest.ObjectFromMultipleStrings (0 ms) 3: [ RUN ] TreeValueTransformTest.ScopedTransformRules @@ -59420,10 +59450,10 @@ 3: [ RUN ] LoggerTest.LogsToMultipleStreams 3: [ OK ] LoggerTest.LogsToMultipleStreams (0 ms) 3: [ RUN ] LoggerTest.LogsToMultipleFiles -3: [ OK ] LoggerTest.LogsToMultipleFiles (1 ms) +3: [ OK ] LoggerTest.LogsToMultipleFiles (0 ms) 3: [ RUN ] LoggerTest.LogsToStreamAndFile 3: [ OK ] LoggerTest.LogsToStreamAndFile (0 ms) -3: [----------] 7 tests from LoggerTest (1 ms total) +3: [----------] 7 tests from LoggerTest (0 ms total) 3: 3: [----------] 4 tests from MutexBasicTest 3: [ RUN ] MutexBasicTest.CanBeMade @@ -59434,23 +59464,23 @@ 3: [ OK ] MutexBasicTest.CanBeTryLocked (0 ms) 3: [ RUN ] MutexBasicTest.CanBeUsedInLockGuard 3: [ OK ] MutexBasicTest.CanBeUsedInLockGuard (0 ms) -3: [----------] 4 tests from MutexBasicTest (0 ms total) +3: [----------] 4 tests from MutexBasicTest (1 ms total) 3: 3: [----------] 3 tests from MutexTaskTest 3: [ RUN ] MutexTaskTest.MutualExclusionWorksWithLock -3: [ OK ] MutexTaskTest.MutualExclusionWorksWithLock (11 ms) +3: [ OK ] MutexTaskTest.MutualExclusionWorksWithLock (14 ms) 3: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread -3: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread (12 ms) +3: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread (4 ms) 3: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread 3: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread (0 ms) -3: [----------] 3 tests from MutexTaskTest (23 ms total) +3: [----------] 3 tests from MutexTaskTest (18 ms total) 3: 3: [----------] 2 tests from PathTest 3: [ RUN ] PathTest.StripSourcePrefixWorks 3: [ OK ] PathTest.StripSourcePrefixWorks (0 ms) 3: [ RUN ] PathTest.SearchOperationsWork -3: [ OK ] PathTest.SearchOperationsWork (1 ms) -3: [----------] 2 tests from PathTest (1 ms total) +3: [ OK ] PathTest.SearchOperationsWork (0 ms) +3: [----------] 2 tests from PathTest (0 ms total) 3: 3: [----------] 2 tests from PhysicalNodeCommunicatorTest 3: [ RUN ] PhysicalNodeCommunicatorTest.CanConstruct @@ -59531,14 +59561,14 @@ 3: [ RUN ] TextLineWrapperTest.HandlesIndent 3: [ OK ] TextLineWrapperTest.HandlesIndent (0 ms) 3: [ RUN ] TextLineWrapperTest.HandlesIndentWithEmptyLines -3: [ OK ] TextLineWrapperTest.HandlesIndentWithEmptyLines (1 ms) +3: [ OK ] TextLineWrapperTest.HandlesIndentWithEmptyLines (0 ms) 3: [ RUN ] TextLineWrapperTest.HandlesHangingIndent 3: [ OK ] TextLineWrapperTest.HandlesHangingIndent (0 ms) 3: [ RUN ] TextLineWrapperTest.HandlesContinuationCharacter 3: [ OK ] TextLineWrapperTest.HandlesContinuationCharacter (0 ms) 3: [ RUN ] TextLineWrapperTest.WrapsCorrectlyWithExtraWhitespace 3: [ OK ] TextLineWrapperTest.WrapsCorrectlyWithExtraWhitespace (0 ms) -3: [----------] 10 tests from TextLineWrapperTest (1 ms total) +3: [----------] 10 tests from TextLineWrapperTest (0 ms total) 3: 3: [----------] 6 tests from TextWriterTest 3: [ RUN ] TextWriterTest.WritesLines @@ -59600,7 +59630,7 @@ 3: [ OK ] BitmaskTest64_10_42/BitmaskTest64.ToHex/0 (0 ms) 3: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.ToHex/1 3: [ OK ] BitmaskTest64_10_42/BitmaskTest64.ToHex/1 (0 ms) -3: [----------] 12 tests from BitmaskTest64_10_42/BitmaskTest64 (0 ms total) +3: [----------] 12 tests from BitmaskTest64_10_42/BitmaskTest64 (1 ms total) 3: 3: [----------] 12 tests from BitmaskTest128_9_78/BitmaskTest128 3: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.SetAndClear/0 @@ -59631,24 +59661,24 @@ 3: 3: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 -3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 (14 ms) +3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 (6 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 -3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 (12 ms) +3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 (4 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 -3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 (12 ms) +3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 (4 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 -3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 (12 ms) +3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 (4 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 -3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 (12 ms) +3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 (3 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 -3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 (12 ms) +3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 (13 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/0 3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/0 (0 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/1 3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/1 (0 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2 3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2 (0 ms) -3: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest (74 ms total) +3: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest (34 ms total) 3: 3: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest 3: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/0 @@ -59658,19 +59688,19 @@ 3: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/2 3: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/2 (0 ms) 3: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/3 -3: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/3 (1 ms) +3: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/3 (0 ms) 3: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/4 3: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/4 (0 ms) 3: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/5 3: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/5 (0 ms) 3: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/6 3: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/6 (0 ms) -3: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest (1 ms total) +3: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest (0 ms total) 3: 3: [----------] Global test environment tear-down -3: [==========] 347 tests from 56 test cases ran. (114 ms total) +3: [==========] 347 tests from 56 test cases ran. (60 ms total) 3: [ PASSED ] 347 tests. - 3/54 Test #3: UtilityUnitTests .................... Passed 0.17 sec + 3/54 Test #3: UtilityUnitTests .................... Passed 0.13 sec test 4 Start 4: UtilityMpiUnitTests @@ -59680,15 +59710,15 @@ 4: [----------] Global test environment set-up. 4: [----------] 2 tests from PhysicalNodeCommunicatorTest 4: [ RUN ] PhysicalNodeCommunicatorTest.CanConstruct -4: [ OK ] PhysicalNodeCommunicatorTest.CanConstruct (32 ms) +4: [ OK ] PhysicalNodeCommunicatorTest.CanConstruct (34 ms) 4: [ RUN ] PhysicalNodeCommunicatorTest.CanCallBarrier -4: [ OK ] PhysicalNodeCommunicatorTest.CanCallBarrier (36 ms) -4: [----------] 2 tests from PhysicalNodeCommunicatorTest (68 ms total) +4: [ OK ] PhysicalNodeCommunicatorTest.CanCallBarrier (40 ms) +4: [----------] 2 tests from PhysicalNodeCommunicatorTest (74 ms total) 4: 4: [----------] Global test environment tear-down -4: [==========] 2 tests from 1 test case ran. (69 ms total) +4: [==========] 2 tests from 1 test case ran. (75 ms total) 4: [ PASSED ] 2 tests. - 4/54 Test #4: UtilityMpiUnitTests ................. Passed 0.10 sec + 4/54 Test #4: UtilityMpiUnitTests ................. Passed 0.11 sec test 5 Start 5: MdlibUnitTest @@ -59698,15 +59728,15 @@ 5: [----------] Global test environment set-up. 5: [----------] 1 test from VerletBufferConstraintTest 5: [ RUN ] VerletBufferConstraintTest.EqualMasses -5: [ OK ] VerletBufferConstraintTest.EqualMasses (0 ms) -5: [----------] 1 test from VerletBufferConstraintTest (0 ms total) +5: [ OK ] VerletBufferConstraintTest.EqualMasses (1 ms) +5: [----------] 1 test from VerletBufferConstraintTest (1 ms total) 5: 5: [----------] 2 tests from PrEbinTest 5: [ RUN ] PrEbinTest.HandlesAverages 5: [ OK ] PrEbinTest.HandlesAverages (0 ms) 5: [ RUN ] PrEbinTest.HandlesEmptyAverages -5: [ OK ] PrEbinTest.HandlesEmptyAverages (0 ms) -5: [----------] 2 tests from PrEbinTest (0 ms total) +5: [ OK ] PrEbinTest.HandlesEmptyAverages (1 ms) +5: [----------] 2 tests from PrEbinTest (1 ms total) 5: 5: [----------] 4 tests from ShakeTest 5: [ RUN ] ShakeTest.ConstrainsOneBond @@ -59717,7 +59747,7 @@ 5: [ OK ] ShakeTest.ConstrainsTwoBondsWithACommonAtom (0 ms) 5: [ RUN ] ShakeTest.ConstrainsThreeBondsWithCommonAtoms 5: [ OK ] ShakeTest.ConstrainsThreeBondsWithCommonAtoms (0 ms) -5: [----------] 4 tests from ShakeTest (1 ms total) +5: [----------] 4 tests from ShakeTest (0 ms total) 5: 5: [----------] 1 test from NullSignalTest 5: [ RUN ] NullSignalTest.NullSignallerWorks @@ -59764,12 +59794,12 @@ 5: 5: [----------] 1 test from UpdateGroupsCog 5: [ RUN ] UpdateGroupsCog.ComputesCogs -5: [ OK ] UpdateGroupsCog.ComputesCogs (0 ms) -5: [----------] 1 test from UpdateGroupsCog (0 ms total) +5: [ OK ] UpdateGroupsCog.ComputesCogs (1 ms) +5: [----------] 1 test from UpdateGroupsCog (1 ms total) 5: 5: [----------] 84 tests from WithParameters/ConstraintsTest 5: [ RUN ] WithParameters/ConstraintsTest.SingleConstraint/0 -5: [ OK ] WithParameters/ConstraintsTest.SingleConstraint/0 (1 ms) +5: [ OK ] WithParameters/ConstraintsTest.SingleConstraint/0 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.SingleConstraint/1 5: [ OK ] WithParameters/ConstraintsTest.SingleConstraint/1 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.SingleConstraint/2 @@ -59833,7 +59863,7 @@ 5: [ RUN ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/7 5: [ OK ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/7 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/8 -5: [ OK ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/8 (1 ms) +5: [ OK ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/8 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/9 5: [ OK ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/9 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/10 @@ -59843,7 +59873,7 @@ 5: [ RUN ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/12 5: [ OK ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/12 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/13 -5: [ OK ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/13 (0 ms) +5: [ OK ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/13 (1 ms) 5: [ RUN ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/14 5: [ OK ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/14 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.ThreeConstraintsWithCentralAtom/15 @@ -59901,11 +59931,11 @@ 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/5 5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/5 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/6 -5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/6 (1 ms) +5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/6 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/7 5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/7 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/8 -5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/8 (0 ms) +5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/8 (1 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/9 5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/9 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/10 @@ -59941,10 +59971,10 @@ 5: [----------] 11 tests from WithParameters/EnergyOutputTest 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/0 5: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_0.edr as double precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/0 (10 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/0 (8 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/1 5: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_1.edr as double precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/1 (2 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/1 (6 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/2 5: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_2.edr as double precision energy file 5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/2 (2 ms) @@ -59952,7 +59982,7 @@ 5: [ OK ] WithParameters/EnergyOutputTest.CheckOutput/3 (0 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/4 5: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_4.edr as double precision energy file -5: Reading energy frame 0 time 10.100 Reading energy frame 1 time 27.500 Reading energy frame 2 time 44.900 Reading energy frame 3 time 62.300 Reading energy frame 4 time 79.700 Reading energy frame 5 time 97.100 Reading energy frame 6 time 114.500 Reading energy frame 7 time 131.900 Reading energy frame 8 time 149.300 Reading energy frame 9 time 166.700 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/4 (17 ms) +5: Reading energy frame 0 time 10.100 Reading energy frame 1 time 27.500 Reading energy frame 2 time 44.900 Reading energy frame 3 time 62.300 Reading energy frame 4 time 79.700 Reading energy frame 5 time 97.100 Reading energy frame 6 time 114.500 Reading energy frame 7 time 131.900 Reading energy frame 8 time 149.300 Reading energy frame 9 time 166.700 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/4 (9 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/5 5: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_5.edr as double precision energy file 5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/5 (2 ms) @@ -59961,7 +59991,7 @@ 5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/6 (1 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/7 5: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_7.edr as double precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/7 (10 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/7 (2 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/8 5: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_8.edr as double precision energy file 5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/8 (2 ms) @@ -59971,15 +60001,15 @@ 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/10 5: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_10.edr as double precision energy file 5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/10 (2 ms) -5: [----------] 11 tests from WithParameters/EnergyOutputTest (53 ms total) +5: [----------] 11 tests from WithParameters/EnergyOutputTest (42 ms total) 5: 5: [----------] 24 tests from SimpleTests/CalculateAcceptanceWeightSimple 5: [ RUN ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/0 -5: [ OK ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/0 (0 ms) +5: [ OK ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/0 (1 ms) 5: [ RUN ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/1 5: [ OK ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/1 (0 ms) 5: [ RUN ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/2 -5: [ OK ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/2 (4 ms) +5: [ OK ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/2 (0 ms) 5: [ RUN ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/3 5: [ OK ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/3 (0 ms) 5: [ RUN ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/4 @@ -60022,7 +60052,7 @@ 5: [ OK ] SimpleTests/CalculateAcceptanceWeightSimple.BarkerAndMinVarAreIdentical/6 (0 ms) 5: [ RUN ] SimpleTests/CalculateAcceptanceWeightSimple.BarkerAndMinVarAreIdentical/7 5: [ OK ] SimpleTests/CalculateAcceptanceWeightSimple.BarkerAndMinVarAreIdentical/7 (0 ms) -5: [----------] 24 tests from SimpleTests/CalculateAcceptanceWeightSimple (5 ms total) +5: [----------] 24 tests from SimpleTests/CalculateAcceptanceWeightSimple (1 ms total) 5: 5: [----------] 14 tests from RegressionTests/CalculateAcceptanceWeightRangeRegression 5: [ RUN ] RegressionTests/CalculateAcceptanceWeightRangeRegression.ValuesMatch/0 @@ -60061,7 +60091,7 @@ 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/1 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/1 (0 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/2 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/2 (0 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/2 (1 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/3 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/3 (0 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/4 @@ -60069,30 +60099,30 @@ 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/5 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/5 (2 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/6 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/6 (9 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/6 (6 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/7 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/7 (0 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/8 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/8 (0 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/9 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/9 (0 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/9 (1 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/10 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/10 (1 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/10 (2 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/11 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/11 (9 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/11 (2 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/12 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/12 (1 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/12 (2 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/13 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/13 (2 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/14 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/14 (2 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/15 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/15 (5 ms) -5: [----------] 16 tests from WithParameters/LeapFrogTest (36 ms total) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/15 (2 ms) +5: [----------] 16 tests from WithParameters/LeapFrogTest (23 ms total) 5: 5: [----------] 13 tests from WithParameters/SettleTest 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/0 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/0 (0 ms) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/0 (1 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/1 5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/1 (0 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/2 @@ -60117,12 +60147,12 @@ 5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/11 (1 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/12 5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/12 (1 ms) -5: [----------] 13 tests from WithParameters/SettleTest (7 ms total) +5: [----------] 13 tests from WithParameters/SettleTest (9 ms total) 5: 5: [----------] Global test environment tear-down -5: [==========] 187 tests from 13 test cases ran. (105 ms total) +5: [==========] 187 tests from 13 test cases ran. (81 ms total) 5: [ PASSED ] 187 tests. - 5/54 Test #5: MdlibUnitTest ....................... Passed 0.16 sec + 5/54 Test #5: MdlibUnitTest ....................... Passed 0.13 sec test 6 Start 6: AppliedForcesUnitTest @@ -60132,10 +60162,10 @@ 6: [----------] Global test environment set-up. 6: [----------] 2 tests from DensityFittingTest 6: [ RUN ] DensityFittingTest.ForceProviderLackingInputThrows -6: [ OK ] DensityFittingTest.ForceProviderLackingInputThrows (4 ms) +6: [ OK ] DensityFittingTest.ForceProviderLackingInputThrows (0 ms) 6: [ RUN ] DensityFittingTest.SingleAtom 6: [ OK ] DensityFittingTest.SingleAtom (1 ms) -6: [----------] 2 tests from DensityFittingTest (5 ms total) +6: [----------] 2 tests from DensityFittingTest (1 ms total) 6: 6: [----------] 8 tests from DensityFittingOptionsTest 6: [ RUN ] DensityFittingOptionsTest.DefaultParameters @@ -60183,9 +60213,9 @@ 6: [----------] 3 tests from ElectricFieldTest (0 ms total) 6: 6: [----------] Global test environment tear-down -6: [==========] 20 tests from 4 test cases ran. (6 ms total) +6: [==========] 20 tests from 4 test cases ran. (2 ms total) 6: [ PASSED ] 20 tests. - 6/54 Test #6: AppliedForcesUnitTest ............... Passed 0.04 sec + 6/54 Test #6: AppliedForcesUnitTest ............... Passed 0.02 sec test 7 Start 7: CommandLineUnitTests @@ -60204,9 +60234,9 @@ 7: 7: [----------] 7 tests from CommandLineHelpWriterTest 7: [ RUN ] CommandLineHelpWriterTest.HandlesOptionTypes -7: [ OK ] CommandLineHelpWriterTest.HandlesOptionTypes (0 ms) +7: [ OK ] CommandLineHelpWriterTest.HandlesOptionTypes (1 ms) 7: [ RUN ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables -7: [ OK ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables (1 ms) +7: [ OK ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables (0 ms) 7: [ RUN ] CommandLineHelpWriterTest.HandlesLongFileOptions 7: [ OK ] CommandLineHelpWriterTest.HandlesLongFileOptions (0 ms) 7: [ RUN ] CommandLineHelpWriterTest.HandlesLongOptions @@ -60214,10 +60244,10 @@ 7: [ RUN ] CommandLineHelpWriterTest.HandlesOptionGroups 7: [ OK ] CommandLineHelpWriterTest.HandlesOptionGroups (0 ms) 7: [ RUN ] CommandLineHelpWriterTest.HandlesHelpText -7: [ OK ] CommandLineHelpWriterTest.HandlesHelpText (0 ms) +7: [ OK ] CommandLineHelpWriterTest.HandlesHelpText (1 ms) 7: [ RUN ] CommandLineHelpWriterTest.HandlesKnownIssues 7: [ OK ] CommandLineHelpWriterTest.HandlesKnownIssues (0 ms) -7: [----------] 7 tests from CommandLineHelpWriterTest (1 ms total) +7: [----------] 7 tests from CommandLineHelpWriterTest (2 ms total) 7: 7: [----------] 6 tests from CommandLineModuleManagerTest 7: [ RUN ] CommandLineModuleManagerTest.RunsModule @@ -60227,12 +60257,12 @@ 7: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet 7: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet (0 ms) 7: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH -7: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH (1 ms) +7: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH (0 ms) 7: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule 7: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule (0 ms) 7: [ RUN ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames 7: [ OK ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames (0 ms) -7: [----------] 6 tests from CommandLineModuleManagerTest (1 ms total) +7: [----------] 6 tests from CommandLineModuleManagerTest (0 ms total) 7: 7: [----------] 13 tests from CommandLineParserTest 7: [ RUN ] CommandLineParserTest.HandlesSingleValues @@ -60240,7 +60270,7 @@ 7: [ RUN ] CommandLineParserTest.HandlesBooleanWithoutArgument 7: [ OK ] CommandLineParserTest.HandlesBooleanWithoutArgument (0 ms) 7: [ RUN ] CommandLineParserTest.HandlesBooleanAsNoWithoutArgument -7: [ OK ] CommandLineParserTest.HandlesBooleanAsNoWithoutArgument (0 ms) +7: [ OK ] CommandLineParserTest.HandlesBooleanAsNoWithoutArgument (1 ms) 7: [ RUN ] CommandLineParserTest.ThrowsWithBooleanAsNoWithArgument 7: [ OK ] CommandLineParserTest.ThrowsWithBooleanAsNoWithArgument (0 ms) 7: [ RUN ] CommandLineParserTest.HandlesNegativeNumbers @@ -60261,22 +60291,22 @@ 7: [ OK ] CommandLineParserTest.CanAllowPositionalArguments (0 ms) 7: [ RUN ] CommandLineParserTest.CannotHavePositionalArgumentsAfterOptions 7: [ OK ] CommandLineParserTest.CannotHavePositionalArgumentsAfterOptions (0 ms) -7: [----------] 13 tests from CommandLineParserTest (0 ms total) +7: [----------] 13 tests from CommandLineParserTest (1 ms total) 7: 7: [----------] 6 tests from CommandLineProgramContextTest 7: [ RUN ] CommandLineProgramContextTest.FindsBinaryWithAbsolutePath -7: [ OK ] CommandLineProgramContextTest.FindsBinaryWithAbsolutePath (0 ms) +7: [ OK ] CommandLineProgramContextTest.FindsBinaryWithAbsolutePath (1 ms) 7: [ RUN ] CommandLineProgramContextTest.FindsBinaryWithRelativePath 7: [ OK ] CommandLineProgramContextTest.FindsBinaryWithRelativePath (0 ms) 7: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromPath -7: [ OK ] CommandLineProgramContextTest.FindsBinaryFromPath (4 ms) +7: [ OK ] CommandLineProgramContextTest.FindsBinaryFromPath (0 ms) 7: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromCurrentDirectory 7: [ OK ] CommandLineProgramContextTest.FindsBinaryFromCurrentDirectory (0 ms) 7: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromAbsoluteSymLink -7: [ OK ] CommandLineProgramContextTest.FindsBinaryFromAbsoluteSymLink (1 ms) +7: [ OK ] CommandLineProgramContextTest.FindsBinaryFromAbsoluteSymLink (0 ms) 7: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromRelativeSymLink 7: [ OK ] CommandLineProgramContextTest.FindsBinaryFromRelativeSymLink (0 ms) -7: [----------] 6 tests from CommandLineProgramContextTest (5 ms total) +7: [----------] 6 tests from CommandLineProgramContextTest (1 ms total) 7: 7: [----------] 3 tests from OutputNamesTest 7: [ RUN ] OutputNamesTest.CanBeSuffixed @@ -60321,11 +60351,11 @@ 7: [ RUN ] ParseCommonArgsTest.AcceptsNonExistentInputFilesIfSpecified 7: [ OK ] ParseCommonArgsTest.AcceptsNonExistentInputFilesIfSpecified (0 ms) 7: [ RUN ] ParseCommonArgsTest.HandlesCompressedFiles -7: [ OK ] ParseCommonArgsTest.HandlesCompressedFiles (0 ms) +7: [ OK ] ParseCommonArgsTest.HandlesCompressedFiles (1 ms) 7: [ RUN ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension 7: [ OK ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension (0 ms) 7: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFile -7: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFile (1 ms) +7: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFile (0 ms) 7: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName 7: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName (0 ms) 7: [ RUN ] ParseCommonArgsTest.CanKeepUnknownArgs @@ -60333,9 +60363,9 @@ 7: [----------] 21 tests from ParseCommonArgsTest (1 ms total) 7: 7: [----------] Global test environment tear-down -7: [==========] 59 tests from 7 test cases ran. (10 ms total) +7: [==========] 59 tests from 7 test cases ran. (7 ms total) 7: [ PASSED ] 59 tests. - 7/54 Test #7: CommandLineUnitTests ................ Passed 0.04 sec + 7/54 Test #7: CommandLineUnitTests ................ Passed 0.03 sec test 8 Start 8: DomDecTests @@ -60355,10 +60385,10 @@ 8: [ RUN ] HashedMap.Clears 8: [ OK ] HashedMap.Clears (0 ms) 8: [ RUN ] HashedMap.LinkedEntries -8: [ OK ] HashedMap.LinkedEntries (8 ms) +8: [ OK ] HashedMap.LinkedEntries (0 ms) 8: [ RUN ] HashedMap.ResizesTable 8: [ OK ] HashedMap.ResizesTable (0 ms) -8: [----------] 7 tests from HashedMap (8 ms total) +8: [----------] 7 tests from HashedMap (1 ms total) 8: 8: [----------] 2 tests from LocalAtomSetManager 8: [ RUN ] LocalAtomSetManager.CanAddEmptyLocalAtomSet @@ -60368,7 +60398,7 @@ 8: [----------] 2 tests from LocalAtomSetManager (0 ms total) 8: 8: [----------] Global test environment tear-down -8: [==========] 9 tests from 2 test cases ran. (8 ms total) +8: [==========] 9 tests from 2 test cases ran. (1 ms total) 8: [ PASSED ] 9 tests. 8/54 Test #8: DomDecTests ......................... Passed 0.04 sec test 9 @@ -60380,73 +60410,73 @@ 9: [----------] Global test environment set-up. 9: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest 9: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0 -9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0 (1 ms) +9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0 (0 ms) 9: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/1 9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/1 (0 ms) 9: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 (0 ms) 9: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 -9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 (12 ms) +9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 (5 ms) 9: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 -9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 (1 ms) -9: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest (14 ms total) +9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 (0 ms) +9: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest (5 ms total) 9: 9: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 (4 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 (13 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 (16 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 (3 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 (11 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 (11 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 (4 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 (10 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 (11 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 (4 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 (11 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 (15 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 (10 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 (24 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 (16 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 (15 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 (10 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 (10 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 (10 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 (4 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 (3 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 (10 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 (15 ms) -9: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest (176 ms total) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 (5 ms) +9: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest (144 ms total) 9: 9: [----------] 144 tests from SaneInput/PmeGatherTest 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/0 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/0 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/1 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/1 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/1 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/2 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/2 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/3 @@ -60458,23 +60488,23 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/6 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/6 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/7 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/7 (9 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/7 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/8 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/8 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/8 (9 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/9 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/9 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/10 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/10 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/10 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/11 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/11 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/11 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/12 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/12 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/13 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/13 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/13 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/14 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/14 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/15 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/15 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/15 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/16 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/16 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/17 @@ -60482,47 +60512,47 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/18 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/18 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/19 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/19 (9 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/19 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/20 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/20 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/21 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/21 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/22 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/22 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/22 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/23 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/23 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/23 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/24 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/24 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/25 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/25 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/25 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/26 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/26 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/27 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/27 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/27 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/28 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/28 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/28 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/29 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/29 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/30 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/30 (9 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/30 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/31 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/31 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/31 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/32 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/32 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/33 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/33 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/33 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/34 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/34 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/35 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/35 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/35 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/36 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/36 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/36 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/37 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/37 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/38 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/38 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/39 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/39 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/39 (8 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/40 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/40 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/41 @@ -60542,47 +60572,47 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/48 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/48 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/49 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/49 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/49 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/50 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/50 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/50 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/51 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/51 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/52 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/52 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/52 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/53 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/53 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/53 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/54 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/54 (13 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/54 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/55 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/55 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/56 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/56 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/56 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/57 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/57 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/57 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/58 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/58 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/59 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/59 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/60 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/60 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/60 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/61 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/61 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/61 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/62 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/62 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/63 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/63 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/63 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/64 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/64 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/65 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/65 (8 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/65 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/66 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/66 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/66 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/67 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/67 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/68 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/68 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/68 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/69 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/69 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/69 (9 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/70 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/70 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/71 @@ -60594,19 +60624,19 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/74 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/74 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/75 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/75 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/75 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/76 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/76 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/76 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/77 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/77 (8 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/77 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/78 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/78 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/79 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/79 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/80 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/80 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/80 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/81 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/81 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/81 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/82 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/82 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/83 @@ -60624,33 +60654,33 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/89 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/89 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/90 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/90 (8 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/90 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/91 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/91 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/92 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/92 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/92 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/93 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/93 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/94 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/94 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/94 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/95 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/95 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/96 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/96 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/96 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/97 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/97 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/97 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/98 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/98 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/99 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/99 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/100 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/100 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/100 (9 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/101 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/101 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/101 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/102 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/102 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/103 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/103 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/103 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/104 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/104 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/105 @@ -60672,25 +60702,25 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/113 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/113 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/114 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/114 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/114 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/115 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/115 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/115 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/116 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/116 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/117 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/117 (13 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/117 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/118 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/118 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/119 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/119 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/120 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/120 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/120 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/121 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/121 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/122 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/122 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/122 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/123 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/123 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/123 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/124 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/124 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/125 @@ -60702,15 +60732,15 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/128 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/128 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/129 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/129 (9 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/129 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/130 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/130 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/130 (9 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/131 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/131 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/132 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/132 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/132 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/133 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/133 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/133 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/134 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/134 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/135 @@ -60718,84 +60748,84 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/136 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/136 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/137 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/137 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/137 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/138 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/138 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/139 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/139 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/139 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/140 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/140 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/141 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/141 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/141 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/142 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/142 (9 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/142 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/143 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/143 (0 ms) -9: [----------] 144 tests from SaneInput/PmeGatherTest (135 ms total) +9: [----------] 144 tests from SaneInput/PmeGatherTest (78 ms total) 9: 9: [----------] 16 tests from SaneInput/PmeSolveTest 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/0 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/0 (2 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/0 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/1 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/1 (1 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/1 (2 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/2 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/2 (9 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/2 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/3 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/3 (2 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/3 (9 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/4 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/4 (2 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/5 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/5 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/6 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/6 (1 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/6 (0 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/7 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/7 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/8 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/8 (9 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/8 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/9 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/9 (2 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/9 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/10 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/10 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/11 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/11 (1 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/11 (10 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/12 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/12 (1 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/12 (0 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/13 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/13 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/14 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/14 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/15 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/15 (9 ms) -9: [----------] 16 tests from SaneInput/PmeSolveTest (44 ms total) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/15 (1 ms) +9: [----------] 16 tests from SaneInput/PmeSolveTest (33 ms total) 9: 9: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 (1 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 -9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 (1 ms) +9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 (0 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 (1 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 -9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 (1 ms) +9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 (0 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 -9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 (0 ms) +9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 (1 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 -9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 (1 ms) +9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 (9 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 (1 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 -9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 (1 ms) -9: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest (7 ms total) +9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 (0 ms) +9: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest (13 ms total) 9: 9: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 -9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 (9 ms) +9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 (2 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 -9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 (2 ms) +9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 (1 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 (1 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 -9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 (2 ms) +9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 (1 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 (1 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 @@ -60804,81 +60834,81 @@ 9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 (1 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 (1 ms) -9: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest (27 ms total) +9: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest (18 ms total) 9: 9: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 (2 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 (10 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 (0 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 (9 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 (2 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 (0 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 (2 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 (0 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 (2 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 (10 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 (0 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 (2 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 (9 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 (0 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 (2 ms) -9: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest (35 ms total) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 (1 ms) +9: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest (31 ms total) 9: 9: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 (11 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 (2 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 (2 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 (9 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 (2 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 (9 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 (1 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 (0 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 (2 ms) -9: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest (34 ms total) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 (9 ms) +9: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest (30 ms total) 9: 9: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 (9 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 (1 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 (2 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 (1 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 (1 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 (2 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 (2 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 (1 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 (10 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 @@ -60888,44 +60918,44 @@ 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 (1 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 (2 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 (1 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 (10 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 (2 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 (2 ms) -9: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest (45 ms total) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 (10 ms) +9: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest (33 ms total) 9: 9: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 (3 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 (2 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 (11 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 (2 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 (4 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 (11 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 (12 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 (4 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 (13 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 (14 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 (5 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 (3 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 (11 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 (3 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 (2 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 (12 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 (3 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 (13 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 (3 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 (5 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 (12 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 (14 ms) -9: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest (113 ms total) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 (5 ms) +9: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest (84 ms total) 9: 9: [----------] Global test environment tear-down -9: [==========] 257 tests from 10 test cases ran. (780 ms total) +9: [==========] 257 tests from 10 test cases ran. (642 ms total) 9: [ PASSED ] 257 tests. - 9/54 Test #9: EwaldUnitTests ...................... Passed 0.89 sec + 9/54 Test #9: EwaldUnitTests ...................... Passed 0.76 sec test 10 Start 10: FFTUnitTests @@ -60935,15 +60965,15 @@ 10: [----------] Global test environment set-up. 10: [----------] 2 tests from ManyFFTTest 10: [ RUN ] ManyFFTTest.Complex1DLength48Multi5Test -10: [ OK ] ManyFFTTest.Complex1DLength48Multi5Test (25 ms) +10: [ OK ] ManyFFTTest.Complex1DLength48Multi5Test (18 ms) 10: [ RUN ] ManyFFTTest.Real1DLength48Multi5Test -10: [ OK ] ManyFFTTest.Real1DLength48Multi5Test (56 ms) -10: [----------] 2 tests from ManyFFTTest (82 ms total) +10: [ OK ] ManyFFTTest.Real1DLength48Multi5Test (40 ms) +10: [----------] 2 tests from ManyFFTTest (58 ms total) 10: 10: [----------] 1 test from FFTTest 10: [ RUN ] FFTTest.Real2DLength18_15Test -10: [ OK ] FFTTest.Real2DLength18_15Test (21 ms) -10: [----------] 1 test from FFTTest (21 ms total) +10: [ OK ] FFTTest.Real2DLength18_15Test (15 ms) +10: [----------] 1 test from FFTTest (15 ms total) 10: 10: [----------] 1 test from FFFTest3D 10: [ RUN ] FFFTest3D.Real5_6_9 @@ -60952,31 +60982,31 @@ 10: 10: [----------] 10 tests from 7_8_25_36_60/FFTTest1D 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/0 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/0 (1 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/0 (5 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/1 10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/1 (1 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/2 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/2 (2 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/2 (1 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/3 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/3 (12 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/3 (8 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/4 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/4 (3 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/4 (6 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/0 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/0 (1 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/0 (0 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/1 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/1 (0 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/1 (1 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/2 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/2 (1 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/2 (0 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/3 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/3 (32 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/3 (25 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/4 10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/4 (37 ms) -10: [----------] 10 tests from 7_8_25_36_60/FFTTest1D (91 ms total) +10: [----------] 10 tests from 7_8_25_36_60/FFTTest1D (85 ms total) 10: 10: [----------] Global test environment tear-down -10: [==========] 14 tests from 4 test cases ran. (196 ms total) +10: [==========] 14 tests from 4 test cases ran. (160 ms total) 10: [ PASSED ] 14 tests. -10/54 Test #10: FFTUnitTests ........................ Passed 0.24 sec +10/54 Test #10: FFTUnitTests ........................ Passed 0.20 sec test 11 Start 11: GpuUtilsUnitTests @@ -61103,14 +61133,14 @@ 11: [ OK ] HostAllocatorTestNoMemCopyable/0.CopyAssignment (0 ms) 11: [ RUN ] HostAllocatorTestNoMemCopyable/0.CopyConstruction 11: [ OK ] HostAllocatorTestNoMemCopyable/0.CopyConstruction (0 ms) -11: [----------] 2 tests from HostAllocatorTestNoMemCopyable/0 (0 ms total) +11: [----------] 2 tests from HostAllocatorTestNoMemCopyable/0 (1 ms total) 11: 11: [----------] 2 tests from HostAllocatorTestNoMemCopyable/1, where TypeParam = double 11: [ RUN ] HostAllocatorTestNoMemCopyable/1.CopyAssignment 11: [ OK ] HostAllocatorTestNoMemCopyable/1.CopyAssignment (0 ms) 11: [ RUN ] HostAllocatorTestNoMemCopyable/1.CopyConstruction -11: [ OK ] HostAllocatorTestNoMemCopyable/1.CopyConstruction (1 ms) -11: [----------] 2 tests from HostAllocatorTestNoMemCopyable/1 (1 ms total) +11: [ OK ] HostAllocatorTestNoMemCopyable/1.CopyConstruction (0 ms) +11: [----------] 2 tests from HostAllocatorTestNoMemCopyable/1 (0 ms total) 11: 11: [----------] 2 tests from HostAllocatorTestNoMemCopyable/2, where TypeParam = gmx::BasicVector 11: [ RUN ] HostAllocatorTestNoMemCopyable/2.CopyAssignment @@ -61171,7 +61201,7 @@ 11: [----------] Global test environment tear-down 11: [==========] 62 tests from 20 test cases ran. (1 ms total) 11: [ PASSED ] 62 tests. -11/54 Test #11: GpuUtilsUnitTests ................... Passed 0.04 sec +11/54 Test #11: GpuUtilsUnitTests ................... Passed 0.05 sec test 12 Start 12: HardwareUnitTests @@ -61181,19 +61211,19 @@ 12: [----------] Global test environment set-up. 12: [----------] 4 tests from HardwareTopologyTest 12: [ RUN ] HardwareTopologyTest.Execute -12: [ OK ] HardwareTopologyTest.Execute (103 ms) +12: [ OK ] HardwareTopologyTest.Execute (82 ms) 12: [ RUN ] HardwareTopologyTest.HwlocExecute -12: [ OK ] HardwareTopologyTest.HwlocExecute (128 ms) +12: [ OK ] HardwareTopologyTest.HwlocExecute (91 ms) 12: [ RUN ] HardwareTopologyTest.ProcessorSelfconsistency -12: [ OK ] HardwareTopologyTest.ProcessorSelfconsistency (128 ms) +12: [ OK ] HardwareTopologyTest.ProcessorSelfconsistency (73 ms) 12: [ RUN ] HardwareTopologyTest.NumaCacheSelfconsistency -12: [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (119 ms) -12: [----------] 4 tests from HardwareTopologyTest (479 ms total) +12: [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (71 ms) +12: [----------] 4 tests from HardwareTopologyTest (317 ms total) 12: 12: [----------] Global test environment tear-down -12: [==========] 4 tests from 1 test case ran. (479 ms total) +12: [==========] 4 tests from 1 test case ran. (317 ms total) 12: [ PASSED ] 4 tests. -12/54 Test #12: HardwareUnitTests ................... Passed 0.51 sec +12/54 Test #12: HardwareUnitTests ................... Passed 0.35 sec test 13 Start 13: MathUnitTests @@ -61230,7 +61260,7 @@ 13: [ OK ] ArrayRefWithPaddingTest/2.AssignFromPaddedVectorWorks (0 ms) 13: [ RUN ] ArrayRefWithPaddingTest/2.ConstructFromPointersWorks 13: [ OK ] ArrayRefWithPaddingTest/2.ConstructFromPointersWorks (0 ms) -13: [----------] 2 tests from ArrayRefWithPaddingTest/2 (1 ms total) +13: [----------] 2 tests from ArrayRefWithPaddingTest/2 (0 ms total) 13: 13: [----------] 8 tests from TranslateAndScaleTest 13: [ RUN ] TranslateAndScaleTest.identityTransformation @@ -61240,7 +61270,7 @@ 13: [ RUN ] TranslateAndScaleTest.scalingWithZeroTranslation 13: [ OK ] TranslateAndScaleTest.scalingWithZeroTranslation (0 ms) 13: [ RUN ] TranslateAndScaleTest.translationAndScalingNonTrivial -13: [ OK ] TranslateAndScaleTest.translationAndScalingNonTrivial (0 ms) +13: [ OK ] TranslateAndScaleTest.translationAndScalingNonTrivial (1 ms) 13: [ RUN ] TranslateAndScaleTest.scalingIdentity 13: [ OK ] TranslateAndScaleTest.scalingIdentity (0 ms) 13: [ RUN ] TranslateAndScaleTest.scalingNonTrivial @@ -61249,7 +61279,7 @@ 13: [ OK ] TranslateAndScaleTest.scalingInverseNoZero (0 ms) 13: [ RUN ] TranslateAndScaleTest.scalingInverseWithOneScaleDimensionZero 13: [ OK ] TranslateAndScaleTest.scalingInverseWithOneScaleDimensionZero (0 ms) -13: [----------] 8 tests from TranslateAndScaleTest (0 ms total) +13: [----------] 8 tests from TranslateAndScaleTest (1 ms total) 13: 13: [----------] 12 tests from DensitySimilarityTest 13: [ RUN ] DensitySimilarityTest.InnerProductIsCorrect @@ -61259,7 +61289,7 @@ 13: [ RUN ] DensitySimilarityTest.GradientThrowsIfDensitiesDontMatch 13: [ OK ] DensitySimilarityTest.GradientThrowsIfDensitiesDontMatch (0 ms) 13: [ RUN ] DensitySimilarityTest.SimilarityThrowsIfDensitiesDontMatch -13: [ OK ] DensitySimilarityTest.SimilarityThrowsIfDensitiesDontMatch (1 ms) +13: [ OK ] DensitySimilarityTest.SimilarityThrowsIfDensitiesDontMatch (0 ms) 13: [ RUN ] DensitySimilarityTest.CopiedMeasureInnerProductIsCorrect 13: [ OK ] DensitySimilarityTest.CopiedMeasureInnerProductIsCorrect (0 ms) 13: [ RUN ] DensitySimilarityTest.RelativeEntropyOfSameDensityIsZero @@ -61269,14 +61299,14 @@ 13: [ RUN ] DensitySimilarityTest.RelativeEntropyGradientIsCorrect 13: [ OK ] DensitySimilarityTest.RelativeEntropyGradientIsCorrect (0 ms) 13: [ RUN ] DensitySimilarityTest.CrossCorrelationIsOne -13: [ OK ] DensitySimilarityTest.CrossCorrelationIsOne (29 ms) +13: [ OK ] DensitySimilarityTest.CrossCorrelationIsOne (34 ms) 13: [ RUN ] DensitySimilarityTest.CrossCorrelationIsMinusOneWhenAntiCorrelated 13: [ OK ] DensitySimilarityTest.CrossCorrelationIsMinusOneWhenAntiCorrelated (28 ms) 13: [ RUN ] DensitySimilarityTest.CrossCorrelationGradientIsZeroWhenCorrelated -13: [ OK ] DensitySimilarityTest.CrossCorrelationGradientIsZeroWhenCorrelated (23 ms) +13: [ OK ] DensitySimilarityTest.CrossCorrelationGradientIsZeroWhenCorrelated (16 ms) 13: [ RUN ] DensitySimilarityTest.CrossCorrelationGradientIsCorrect 13: [ OK ] DensitySimilarityTest.CrossCorrelationGradientIsCorrect (0 ms) -13: [----------] 12 tests from DensitySimilarityTest (81 ms total) +13: [----------] 12 tests from DensitySimilarityTest (79 ms total) 13: 13: [----------] 6 tests from StructureSimilarityTest 13: [ RUN ] StructureSimilarityTest.StructureComparedToSelfHasZeroRMSD @@ -61310,7 +61340,7 @@ 13: [ OK ] ExponentialMovingAverage.InverseLagTimeCorrect (0 ms) 13: [ RUN ] ExponentialMovingAverage.RoundTripAsKeyValueTree 13: [ OK ] ExponentialMovingAverage.RoundTripAsKeyValueTree (0 ms) -13: [----------] 8 tests from ExponentialMovingAverage (0 ms total) +13: [----------] 8 tests from ExponentialMovingAverage (1 ms total) 13: 13: [----------] 21 tests from FunctionTest 13: [ RUN ] FunctionTest.StaticLog2 @@ -61324,7 +61354,7 @@ 13: [ RUN ] FunctionTest.InvsqrtFloat 13: [ OK ] FunctionTest.InvsqrtFloat (0 ms) 13: [ RUN ] FunctionTest.InvsqrtDouble -13: [ OK ] FunctionTest.InvsqrtDouble (1 ms) +13: [ OK ] FunctionTest.InvsqrtDouble (0 ms) 13: [ RUN ] FunctionTest.InvsqrtInteger 13: [ OK ] FunctionTest.InvsqrtInteger (0 ms) 13: [ RUN ] FunctionTest.InvcbrtFloat @@ -61344,7 +61374,7 @@ 13: [ RUN ] FunctionTest.InvsixthrootDouble 13: [ OK ] FunctionTest.InvsixthrootDouble (0 ms) 13: [ RUN ] FunctionTest.InvsixthrootInteger -13: [ OK ] FunctionTest.InvsixthrootInteger (0 ms) +13: [ OK ] FunctionTest.InvsixthrootInteger (1 ms) 13: [ RUN ] FunctionTest.Powers 13: [ OK ] FunctionTest.Powers (0 ms) 13: [ RUN ] FunctionTest.ErfInvFloat @@ -61352,10 +61382,10 @@ 13: [ RUN ] FunctionTest.ErfInvDouble 13: [ OK ] FunctionTest.ErfInvDouble (0 ms) 13: [ RUN ] FunctionTest.ErfAndErfInvAreInversesFloat -13: [ OK ] FunctionTest.ErfAndErfInvAreInversesFloat (1 ms) +13: [ OK ] FunctionTest.ErfAndErfInvAreInversesFloat (0 ms) 13: [ RUN ] FunctionTest.ErfAndErfInvAreInversesDouble 13: [ OK ] FunctionTest.ErfAndErfInvAreInversesDouble (0 ms) -13: [----------] 21 tests from FunctionTest (2 ms total) +13: [----------] 21 tests from FunctionTest (1 ms total) 13: 13: [----------] 4 tests from GaussianOn1DLattice 13: [ RUN ] GaussianOn1DLattice.sumsCloseToOne @@ -61443,7 +61473,7 @@ 13: [ OK ] MatrixTest.canCreateFromLegacyMatrix (0 ms) 13: [ RUN ] MatrixTest.canFillLegacyMatrix 13: [ OK ] MatrixTest.canFillLegacyMatrix (0 ms) -13: [----------] 15 tests from MatrixTest (0 ms total) +13: [----------] 15 tests from MatrixTest (13 ms total) 13: 13: [----------] 25 tests from MultiDimArrayTest 13: [ RUN ] MultiDimArrayTest.canConstructAndFillStatic @@ -61496,7 +61526,7 @@ 13: [ OK ] MultiDimArrayTest.constViewConstBegin (0 ms) 13: [ RUN ] MultiDimArrayTest.constViewConstEnd 13: [ OK ] MultiDimArrayTest.constViewConstEnd (0 ms) -13: [----------] 25 tests from MultiDimArrayTest (1 ms total) +13: [----------] 25 tests from MultiDimArrayTest (0 ms total) 13: 13: [----------] 4 tests from MultiDimArrayToMdSpanTest 13: [ RUN ] MultiDimArrayToMdSpanTest.convertsToMdSpan @@ -61623,7 +61653,7 @@ 13: [ RUN ] RVecTest.CanBeStoredInVector 13: [ OK ] RVecTest.CanBeStoredInVector (0 ms) 13: [ RUN ] RVecTest.ConvertsImplicitlyFrom_rvec -13: [ OK ] RVecTest.ConvertsImplicitlyFrom_rvec (0 ms) +13: [ OK ] RVecTest.ConvertsImplicitlyFrom_rvec (1 ms) 13: [ RUN ] RVecTest.ConvertsImplicitlyTo_rvec 13: [ OK ] RVecTest.ConvertsImplicitlyTo_rvec (0 ms) 13: [ RUN ] RVecTest.WorksAsMutable_rvec @@ -61697,9 +61727,9 @@ 13: [----------] 37 tests from RVecTest (1 ms total) 13: 13: [----------] Global test environment tear-down -13: [==========] 204 tests from 29 test cases ran. (86 ms total) +13: [==========] 204 tests from 29 test cases ran. (96 ms total) 13: [ PASSED ] 204 tests. -13/54 Test #13: MathUnitTests ....................... Passed 0.11 sec +13/54 Test #13: MathUnitTests ....................... Passed 0.13 sec test 14 Start 14: MdrunUtilityUnitTests @@ -61713,7 +61743,7 @@ 14: [ RUN ] ThreadAffinityTest.DoesNothingWhenNotSupported 14: [ OK ] ThreadAffinityTest.DoesNothingWhenNotSupported (0 ms) 14: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads -14: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads (1 ms) +14: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads (0 ms) 14: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads 14: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads (0 ms) 14: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads @@ -61734,22 +61764,22 @@ 14: [ OK ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced (0 ms) 14: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread 14: NOTE: Affinity setting failed. -14: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread (1 ms) +14: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread (0 ms) 14: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithAuto -14: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithAuto (18 ms) +14: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithAuto (11 ms) 14: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced -14: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced (16 ms) +14: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced (1 ms) 14: [ RUN ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads -14: [ OK ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads (16 ms) +14: [ OK ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads (0 ms) 14: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing 14: NOTE: Affinity setting for 1/2 threads failed. -14: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing (16 ms) -14: [----------] 17 tests from ThreadAffinityTest (69 ms total) +14: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing (0 ms) +14: [----------] 17 tests from ThreadAffinityTest (13 ms total) 14: 14: [----------] Global test environment tear-down -14: [==========] 17 tests from 1 test case ran. (69 ms total) +14: [==========] 17 tests from 1 test case ran. (14 ms total) 14: [ PASSED ] 17 tests. -14/54 Test #14: MdrunUtilityUnitTests ............... Passed 0.08 sec +14/54 Test #14: MdrunUtilityUnitTests ............... Passed 0.03 sec test 15 Start 15: MdrunUtilityMpiUnitTests @@ -61759,40 +61789,40 @@ 15: [----------] Global test environment set-up. 15: [----------] 6 tests from ThreadAffinityMultiRankTest 15: [ RUN ] ThreadAffinityMultiRankTest.PinsWholeNode -15: [ OK ] ThreadAffinityMultiRankTest.PinsWholeNode (108 ms) +15: [ OK ] ThreadAffinityMultiRankTest.PinsWholeNode (74 ms) 15: [ RUN ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride -15: [ OK ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride (120 ms) +15: [ OK ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride (80 ms) 15: [ RUN ] ThreadAffinityMultiRankTest.PinsTwoNodes -15: [ OK ] ThreadAffinityMultiRankTest.PinsTwoNodes (56 ms) +15: [ OK ] ThreadAffinityMultiRankTest.PinsTwoNodes (64 ms) 15: [ RUN ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled -15: [ OK ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled (48 ms) +15: [ OK ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled (72 ms) 15: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto -15: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto (68 ms) +15: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto (164 ms) 15: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce -15: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce (68 ms) -15: [----------] 6 tests from ThreadAffinityMultiRankTest (468 ms total) +15: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce (144 ms) +15: [----------] 6 tests from ThreadAffinityMultiRankTest (598 ms total) 15: 15: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly (84 ms) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly (40 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly (60 ms) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly (104 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster (100 ms) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster (36 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly (76 ms) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly (44 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly (68 ms) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly (28 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly (88 ms) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly (54 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly (72 ms) -15: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest (548 ms total) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly (30 ms) +15: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest (336 ms total) 15: 15: [----------] Global test environment tear-down -15: [==========] 13 tests from 2 test cases ran. (1016 ms total) +15: [==========] 13 tests from 2 test cases ran. (934 ms total) 15: [ PASSED ] 13 tests. -15/54 Test #15: MdrunUtilityMpiUnitTests ............ Passed 1.03 sec +15/54 Test #15: MdrunUtilityMpiUnitTests ............ Passed 0.96 sec test 16 Start 16: MDSpanTests @@ -61809,7 +61839,7 @@ 16: [ OK ] BasicAccessorPolicy.Offset (0 ms) 16: [ RUN ] BasicAccessorPolicy.CopyAccessor 16: [ OK ] BasicAccessorPolicy.CopyAccessor (0 ms) -16: [----------] 4 tests from BasicAccessorPolicy (1 ms total) +16: [----------] 4 tests from BasicAccessorPolicy (0 ms total) 16: 16: [----------] 4 tests from ExtentsTest 16: [ RUN ] ExtentsTest.Construction @@ -61886,9 +61916,9 @@ 16: [----------] 6 tests from MdSpanTest/1 (0 ms total) 16: 16: [----------] Global test environment tear-down -16: [==========] 32 tests from 7 test cases ran. (1 ms total) +16: [==========] 32 tests from 7 test cases ran. (0 ms total) 16: [ PASSED ] 32 tests. -16/54 Test #16: MDSpanTests ......................... Passed 0.04 sec +16/54 Test #16: MDSpanTests ......................... Passed 0.02 sec test 17 Start 17: OnlineHelpUnitTests @@ -61917,7 +61947,7 @@ 17: [ RUN ] HelpManagerTest.HandlesSubTopics 17: [ OK ] HelpManagerTest.HandlesSubTopics (0 ms) 17: [ RUN ] HelpManagerTest.HandlesInvalidTopics -17: [ OK ] HelpManagerTest.HandlesInvalidTopics (0 ms) +17: [ OK ] HelpManagerTest.HandlesInvalidTopics (1 ms) 17: [----------] 3 tests from HelpManagerTest (1 ms total) 17: 17: [----------] 2 tests from HelpTopicFormattingTest @@ -61947,13 +61977,13 @@ 17: [ RUN ] HelpWriterContextTest.FormatsSimpleTable 17: [ OK ] HelpWriterContextTest.FormatsSimpleTable (0 ms) 17: [ RUN ] HelpWriterContextTest.FormatsGridTable -17: [ OK ] HelpWriterContextTest.FormatsGridTable (1 ms) +17: [ OK ] HelpWriterContextTest.FormatsGridTable (0 ms) 17: [ RUN ] HelpWriterContextTest.FormatsTitles -17: [ OK ] HelpWriterContextTest.FormatsTitles (0 ms) +17: [ OK ] HelpWriterContextTest.FormatsTitles (1 ms) 17: [----------] 11 tests from HelpWriterContextTest (1 ms total) 17: 17: [----------] Global test environment tear-down -17: [==========] 22 tests from 4 test cases ran. (2 ms total) +17: [==========] 22 tests from 4 test cases ran. (3 ms total) 17: [ PASSED ] 22 tests. 17/54 Test #17: OnlineHelpUnitTests ................. Passed 0.03 sec test 18 @@ -61967,14 +61997,14 @@ 18: [ RUN ] AbstractOptionStorageTest.HandlesSetInFinish 18: [ OK ] AbstractOptionStorageTest.HandlesSetInFinish (0 ms) 18: [ RUN ] AbstractOptionStorageTest.HandlesValueRemoval -18: [ OK ] AbstractOptionStorageTest.HandlesValueRemoval (1 ms) +18: [ OK ] AbstractOptionStorageTest.HandlesValueRemoval (0 ms) 18: [ RUN ] AbstractOptionStorageTest.HandlesValueAddition 18: [ OK ] AbstractOptionStorageTest.HandlesValueAddition (0 ms) 18: [ RUN ] AbstractOptionStorageTest.HandlesTooManyValueAddition 18: [ OK ] AbstractOptionStorageTest.HandlesTooManyValueAddition (0 ms) 18: [ RUN ] AbstractOptionStorageTest.AllowsEmptyValues 18: [ OK ] AbstractOptionStorageTest.AllowsEmptyValues (0 ms) -18: [----------] 5 tests from AbstractOptionStorageTest (1 ms total) +18: [----------] 5 tests from AbstractOptionStorageTest (0 ms total) 18: 18: [----------] 8 tests from FileNameOptionTest 18: [ RUN ] FileNameOptionTest.HandlesRequiredDefaultValueWithoutExtension @@ -61993,7 +62023,7 @@ 18: [ OK ] FileNameOptionTest.GivesErrorOnUnknownFileSuffix (0 ms) 18: [ RUN ] FileNameOptionTest.GivesErrorOnInvalidFileSuffix 18: [ OK ] FileNameOptionTest.GivesErrorOnInvalidFileSuffix (0 ms) -18: [----------] 8 tests from FileNameOptionTest (0 ms total) +18: [----------] 8 tests from FileNameOptionTest (1 ms total) 18: 18: [----------] 15 tests from FileNameOptionManagerTest 18: [ RUN ] FileNameOptionManagerTest.AddsMissingExtension @@ -62009,7 +62039,7 @@ 18: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingRequiredInputFile 18: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingRequiredInputFile (0 ms) 18: [ RUN ] FileNameOptionManagerTest.AcceptsMissingInputFileIfSpecified -18: [ OK ] FileNameOptionManagerTest.AcceptsMissingInputFileIfSpecified (1 ms) +18: [ OK ] FileNameOptionManagerTest.AcceptsMissingInputFileIfSpecified (0 ms) 18: [ RUN ] FileNameOptionManagerTest.AcceptsMissingDefaultInputFileIfSpecified 18: [ OK ] FileNameOptionManagerTest.AcceptsMissingDefaultInputFileIfSpecified (0 ms) 18: [ RUN ] FileNameOptionManagerTest.AcceptsMissingRequiredInputFileIfSpecified @@ -62026,7 +62056,7 @@ 18: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalFromDefaultNameOptionBasedOnExistingFile (0 ms) 18: [ RUN ] FileNameOptionManagerTest.DefaultNameOptionWorksWithoutInputChecking 18: [ OK ] FileNameOptionManagerTest.DefaultNameOptionWorksWithoutInputChecking (0 ms) -18: [----------] 15 tests from FileNameOptionManagerTest (1 ms total) +18: [----------] 15 tests from FileNameOptionManagerTest (0 ms total) 18: 18: [----------] 1 test from OptionsTest 18: [ RUN ] OptionsTest.FailsOnNonsafeStorage @@ -62073,7 +62103,7 @@ 18: [ RUN ] OptionsAssignerIntegerTest.HandlesInvalidValue 18: [ OK ] OptionsAssignerIntegerTest.HandlesInvalidValue (0 ms) 18: [ RUN ] OptionsAssignerIntegerTest.HandlesOverflow -18: [ OK ] OptionsAssignerIntegerTest.HandlesOverflow (4 ms) +18: [ OK ] OptionsAssignerIntegerTest.HandlesOverflow (1 ms) 18: [ RUN ] OptionsAssignerIntegerTest.StoresDefaultValue 18: [ OK ] OptionsAssignerIntegerTest.StoresDefaultValue (0 ms) 18: [ RUN ] OptionsAssignerIntegerTest.StoresDefaultValueIfSet @@ -62091,8 +62121,8 @@ 18: [ RUN ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValue 18: [ OK ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValue (0 ms) 18: [ RUN ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValueWithInvalidAssignment -18: [ OK ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValueWithInvalidAssignment (1 ms) -18: [----------] 13 tests from OptionsAssignerIntegerTest (5 ms total) +18: [ OK ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValueWithInvalidAssignment (0 ms) +18: [----------] 13 tests from OptionsAssignerIntegerTest (8 ms total) 18: 18: [----------] 5 tests from OptionsAssignerDoubleTest 18: [ RUN ] OptionsAssignerDoubleTest.StoresSingleValue @@ -62176,7 +62206,7 @@ 18: [ OK ] TimeUnitBehaviorTest.ScalesUserInputWithMultipleSources (0 ms) 18: [ RUN ] TimeUnitBehaviorTest.TimeUnitOptionWorks 18: [ OK ] TimeUnitBehaviorTest.TimeUnitOptionWorks (0 ms) -18: [----------] 4 tests from TimeUnitBehaviorTest (0 ms total) +18: [----------] 4 tests from TimeUnitBehaviorTest (1 ms total) 18: 18: [----------] 2 tests from TreeValueSupportAssignTest 18: [ RUN ] TreeValueSupportAssignTest.AssignsFromTree @@ -62205,7 +62235,7 @@ 18: 18: [----------] 6 tests from TreeValueSupportAdjustTest 18: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultValues -18: [ OK ] TreeValueSupportAdjustTest.FillsDefaultValues (1 ms) +18: [ OK ] TreeValueSupportAdjustTest.FillsDefaultValues (0 ms) 18: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultVectorValues 18: [ OK ] TreeValueSupportAdjustTest.FillsDefaultVectorValues (0 ms) 18: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultObjectValues @@ -62216,7 +62246,7 @@ 18: [ OK ] TreeValueSupportAdjustTest.MergesDefaultValues (0 ms) 18: [ RUN ] TreeValueSupportAdjustTest.OrdersValues 18: [ OK ] TreeValueSupportAdjustTest.OrdersValues (0 ms) -18: [----------] 6 tests from TreeValueSupportAdjustTest (1 ms total) +18: [----------] 6 tests from TreeValueSupportAdjustTest (0 ms total) 18: 18: [----------] 8 tests from TreeValueSupportTest 18: [ RUN ] TreeValueSupportTest.SupportsBooleanOption @@ -62224,13 +62254,13 @@ 18: [ RUN ] TreeValueSupportTest.SupportsIntegerOption 18: [ OK ] TreeValueSupportTest.SupportsIntegerOption (0 ms) 18: [ RUN ] TreeValueSupportTest.SupportsInt64Option -18: [ OK ] TreeValueSupportTest.SupportsInt64Option (0 ms) +18: [ OK ] TreeValueSupportTest.SupportsInt64Option (1 ms) 18: [ RUN ] TreeValueSupportTest.SupportsStringOption 18: [ OK ] TreeValueSupportTest.SupportsStringOption (0 ms) 18: [ RUN ] TreeValueSupportTest.SupportsFloatOption 18: [ OK ] TreeValueSupportTest.SupportsFloatOption (0 ms) 18: [ RUN ] TreeValueSupportTest.SupportsDoubleOption -18: [ OK ] TreeValueSupportTest.SupportsDoubleOption (1 ms) +18: [ OK ] TreeValueSupportTest.SupportsDoubleOption (0 ms) 18: [ RUN ] TreeValueSupportTest.SupportsEnumIntOption 18: [ OK ] TreeValueSupportTest.SupportsEnumIntOption (0 ms) 18: [ RUN ] TreeValueSupportTest.SupportsEnumOption @@ -62238,9 +62268,9 @@ 18: [----------] 8 tests from TreeValueSupportTest (1 ms total) 18: 18: [----------] Global test environment tear-down -18: [==========] 110 tests from 18 test cases ran. (9 ms total) +18: [==========] 110 tests from 18 test cases ran. (11 ms total) 18: [ PASSED ] 110 tests. -18/54 Test #18: OptionsUnitTests .................... Passed 0.06 sec +18/54 Test #18: OptionsUnitTests .................... Passed 0.04 sec test 19 Start 19: PbcutilUnitTest @@ -62250,20 +62280,20 @@ 19: [----------] Global test environment set-up. 19: [----------] 1 test from PbcTest 19: [ RUN ] PbcTest.CalcShiftsWorks -19: [ OK ] PbcTest.CalcShiftsWorks (0 ms) -19: [----------] 1 test from PbcTest (0 ms total) +19: [ OK ] PbcTest.CalcShiftsWorks (1 ms) +19: [----------] 1 test from PbcTest (1 ms total) 19: 19: [----------] 2 tests from PbcEnumsTest 19: [ RUN ] PbcEnumsTest.CenteringTypeNamesAreCorrect -19: [ OK ] PbcEnumsTest.CenteringTypeNamesAreCorrect (1 ms) +19: [ OK ] PbcEnumsTest.CenteringTypeNamesAreCorrect (0 ms) 19: [ RUN ] PbcEnumsTest.UnitCellTypeNamesAreCorrect 19: [ OK ] PbcEnumsTest.UnitCellTypeNamesAreCorrect (0 ms) -19: [----------] 2 tests from PbcEnumsTest (1 ms total) +19: [----------] 2 tests from PbcEnumsTest (0 ms total) 19: 19: [----------] Global test environment tear-down 19: [==========] 3 tests from 2 test cases ran. (1 ms total) 19: [ PASSED ] 3 tests. -19/54 Test #19: PbcutilUnitTest ..................... Passed 0.04 sec +19/54 Test #19: PbcutilUnitTest ..................... Passed 0.02 sec test 20 Start 20: RandomUnitTests @@ -62306,8 +62336,8 @@ 20: 20: [----------] 1 test from SeedTest 20: [ RUN ] SeedTest.makeRandomSeed -20: [ OK ] SeedTest.makeRandomSeed (1 ms) -20: [----------] 1 test from SeedTest (1 ms total) +20: [ OK ] SeedTest.makeRandomSeed (0 ms) +20: [----------] 1 test from SeedTest (0 ms total) 20: 20: [----------] 6 tests from TabulatedNormalDistributionTest 20: [ RUN ] TabulatedNormalDistributionTest.Output14 @@ -62326,14 +62356,14 @@ 20: 20: [----------] 1 test from TabulatedNormalDistributionTableTest 20: [ RUN ] TabulatedNormalDistributionTableTest.HasValidProperties -20: [ OK ] TabulatedNormalDistributionTableTest.HasValidProperties (9 ms) -20: [----------] 1 test from TabulatedNormalDistributionTableTest (9 ms total) +20: [ OK ] TabulatedNormalDistributionTableTest.HasValidProperties (1 ms) +20: [----------] 1 test from TabulatedNormalDistributionTableTest (1 ms total) 20: 20: [----------] 6 tests from ThreeFry2x64Test 20: [ RUN ] ThreeFry2x64Test.Logical 20: [ OK ] ThreeFry2x64Test.Logical (0 ms) 20: [ RUN ] ThreeFry2x64Test.InternalCounterSequence -20: [ OK ] ThreeFry2x64Test.InternalCounterSequence (1 ms) +20: [ OK ] ThreeFry2x64Test.InternalCounterSequence (0 ms) 20: [ RUN ] ThreeFry2x64Test.Reseed 20: [ OK ] ThreeFry2x64Test.Reseed (0 ms) 20: [ RUN ] ThreeFry2x64Test.Discard @@ -62342,7 +62372,7 @@ 20: [ OK ] ThreeFry2x64Test.InvalidCounter (0 ms) 20: [ RUN ] ThreeFry2x64Test.ExhaustInternalCounter 20: [ OK ] ThreeFry2x64Test.ExhaustInternalCounter (0 ms) -20: [----------] 6 tests from ThreeFry2x64Test (1 ms total) +20: [----------] 6 tests from ThreeFry2x64Test (0 ms total) 20: 20: [----------] 4 tests from UniformIntDistributionTest 20: [ RUN ] UniformIntDistributionTest.Output @@ -62357,7 +62387,7 @@ 20: 20: [----------] 5 tests from UniformRealDistributionTest 20: [ RUN ] UniformRealDistributionTest.GenerateCanonical -20: [ OK ] UniformRealDistributionTest.GenerateCanonical (0 ms) +20: [ OK ] UniformRealDistributionTest.GenerateCanonical (4 ms) 20: [ RUN ] UniformRealDistributionTest.Output 20: [ OK ] UniformRealDistributionTest.Output (0 ms) 20: [ RUN ] UniformRealDistributionTest.Logical @@ -62366,7 +62396,7 @@ 20: [ OK ] UniformRealDistributionTest.Reset (0 ms) 20: [ RUN ] UniformRealDistributionTest.AltParam 20: [ OK ] UniformRealDistributionTest.AltParam (0 ms) -20: [----------] 5 tests from UniformRealDistributionTest (0 ms total) +20: [----------] 5 tests from UniformRealDistributionTest (4 ms total) 20: 20: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test 20: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/0 @@ -62382,17 +62412,17 @@ 20: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/2 20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/2 (0 ms) 20: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/0 -20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/0 (1 ms) +20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/0 (0 ms) 20: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/1 20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/1 (0 ms) 20: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/2 20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/2 (0 ms) -20: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test (1 ms total) +20: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test (0 ms total) 20: 20: [----------] Global test environment tear-down -20: [==========] 44 tests from 10 test cases ran. (12 ms total) +20: [==========] 44 tests from 10 test cases ran. (6 ms total) 20: [ PASSED ] 44 tests. -20/54 Test #20: RandomUnitTests ..................... Passed 0.06 sec +20/54 Test #20: RandomUnitTests ..................... Passed 0.03 sec test 21 Start 21: RestraintTests @@ -62408,7 +62438,7 @@ 21: [----------] Global test environment tear-down 21: [==========] 1 test from 1 test case ran. (0 ms total) 21: [ PASSED ] 1 test. -21/54 Test #21: RestraintTests ...................... Passed 0.04 sec +21/54 Test #21: RestraintTests ...................... Passed 0.01 sec test 22 Start 22: TableUnitTests @@ -62420,52 +62450,52 @@ 22: [ RUN ] SplineTableTest/0.HandlesIncorrectInput 22: [ OK ] SplineTableTest/0.HandlesIncorrectInput (1 ms) 22: [ RUN ] SplineTableTest/0.Sinc -22: [ OK ] SplineTableTest/0.Sinc (0 ms) +22: [ OK ] SplineTableTest/0.Sinc (1 ms) 22: [ RUN ] SplineTableTest/0.LJ12 -22: [ OK ] SplineTableTest/0.LJ12 (34 ms) +22: [ OK ] SplineTableTest/0.LJ12 (21 ms) 22: [ RUN ] SplineTableTest/0.PmeCorrection 22: [ OK ] SplineTableTest/0.PmeCorrection (1 ms) 22: [ RUN ] SplineTableTest/0.HandlesIncorrectNumericalInput -22: [ OK ] SplineTableTest/0.HandlesIncorrectNumericalInput (1 ms) +22: [ OK ] SplineTableTest/0.HandlesIncorrectNumericalInput (4 ms) 22: [ RUN ] SplineTableTest/0.NumericalInputPmeCorr -22: [ OK ] SplineTableTest/0.NumericalInputPmeCorr (0 ms) +22: [ OK ] SplineTableTest/0.NumericalInputPmeCorr (1 ms) 22: [ RUN ] SplineTableTest/0.TwoFunctions -22: [ OK ] SplineTableTest/0.TwoFunctions (65 ms) +22: [ OK ] SplineTableTest/0.TwoFunctions (40 ms) 22: [ RUN ] SplineTableTest/0.ThreeFunctions -22: [ OK ] SplineTableTest/0.ThreeFunctions (73 ms) +22: [ OK ] SplineTableTest/0.ThreeFunctions (35 ms) 22: [ RUN ] SplineTableTest/0.Simd 22: [ OK ] SplineTableTest/0.Simd (7 ms) 22: [ RUN ] SplineTableTest/0.SimdTwoFunctions -22: [ OK ] SplineTableTest/0.SimdTwoFunctions (63 ms) -22: [----------] 10 tests from SplineTableTest/0 (245 ms total) +22: [ OK ] SplineTableTest/0.SimdTwoFunctions (39 ms) +22: [----------] 10 tests from SplineTableTest/0 (150 ms total) 22: 22: [----------] 10 tests from SplineTableTest/1, where TypeParam = gmx::CubicSplineTable 22: [ RUN ] SplineTableTest/1.HandlesIncorrectInput -22: [ OK ] SplineTableTest/1.HandlesIncorrectInput (9 ms) +22: [ OK ] SplineTableTest/1.HandlesIncorrectInput (1 ms) 22: [ RUN ] SplineTableTest/1.Sinc -22: [ OK ] SplineTableTest/1.Sinc (1 ms) +22: [ OK ] SplineTableTest/1.Sinc (2 ms) 22: [ RUN ] SplineTableTest/1.LJ12 -22: [ OK ] SplineTableTest/1.LJ12 (82 ms) +22: [ OK ] SplineTableTest/1.LJ12 (59 ms) 22: [ RUN ] SplineTableTest/1.PmeCorrection -22: [ OK ] SplineTableTest/1.PmeCorrection (9 ms) +22: [ OK ] SplineTableTest/1.PmeCorrection (3 ms) 22: [ RUN ] SplineTableTest/1.HandlesIncorrectNumericalInput 22: [ OK ] SplineTableTest/1.HandlesIncorrectNumericalInput (0 ms) 22: [ RUN ] SplineTableTest/1.NumericalInputPmeCorr -22: [ OK ] SplineTableTest/1.NumericalInputPmeCorr (1 ms) +22: [ OK ] SplineTableTest/1.NumericalInputPmeCorr (0 ms) 22: [ RUN ] SplineTableTest/1.TwoFunctions -22: [ OK ] SplineTableTest/1.TwoFunctions (166 ms) +22: [ OK ] SplineTableTest/1.TwoFunctions (108 ms) 22: [ RUN ] SplineTableTest/1.ThreeFunctions -22: [ OK ] SplineTableTest/1.ThreeFunctions (191 ms) +22: [ OK ] SplineTableTest/1.ThreeFunctions (124 ms) 22: [ RUN ] SplineTableTest/1.Simd -22: [ OK ] SplineTableTest/1.Simd (32 ms) +22: [ OK ] SplineTableTest/1.Simd (21 ms) 22: [ RUN ] SplineTableTest/1.SimdTwoFunctions -22: [ OK ] SplineTableTest/1.SimdTwoFunctions (165 ms) -22: [----------] 10 tests from SplineTableTest/1 (658 ms total) +22: [ OK ] SplineTableTest/1.SimdTwoFunctions (104 ms) +22: [----------] 10 tests from SplineTableTest/1 (423 ms total) 22: 22: [----------] Global test environment tear-down -22: [==========] 20 tests from 2 test cases ran. (903 ms total) +22: [==========] 20 tests from 2 test cases ran. (573 ms total) 22: [ PASSED ] 20 tests. -22/54 Test #22: TableUnitTests ...................... Passed 0.95 sec +22/54 Test #22: TableUnitTests ...................... Passed 0.59 sec test 23 Start 23: TaskAssignmentUnitTests @@ -62475,10 +62505,10 @@ 23: [----------] Global test environment set-up. 23: [----------] 2 tests from UserTaskAssignmentStringHandlingTest 23: [ RUN ] UserTaskAssignmentStringHandlingTest.ParsingAndReconstructionWork -23: [ OK ] UserTaskAssignmentStringHandlingTest.ParsingAndReconstructionWork (0 ms) +23: [ OK ] UserTaskAssignmentStringHandlingTest.ParsingAndReconstructionWork (1 ms) 23: [ RUN ] UserTaskAssignmentStringHandlingTest.EmptyStringCanBeValid 23: [ OK ] UserTaskAssignmentStringHandlingTest.EmptyStringCanBeValid (0 ms) -23: [----------] 2 tests from UserTaskAssignmentStringHandlingTest (0 ms total) +23: [----------] 2 tests from UserTaskAssignmentStringHandlingTest (1 ms total) 23: 23: [----------] 1 test from GpuIdAndAssignmentStringHandlingTest 23: [ RUN ] GpuIdAndAssignmentStringHandlingTest.InvalidInputsThrow @@ -62488,7 +62518,7 @@ 23: [----------] Global test environment tear-down 23: [==========] 3 tests from 2 test cases ran. (1 ms total) 23: [ PASSED ] 3 tests. -23/54 Test #23: TaskAssignmentUnitTests ............. Passed 0.04 sec +23/54 Test #23: TaskAssignmentUnitTests ............. Passed 0.02 sec test 24 Start 24: TopologyTest @@ -62569,12 +62599,12 @@ 26: 26: [----------] 1 test from gridTest 26: [ RUN ] gridTest.neighborhood -26: [ OK ] gridTest.neighborhood (3 ms) -26: [----------] 1 test from gridTest (3 ms total) +26: [ OK ] gridTest.neighborhood (1 ms) +26: [----------] 1 test from gridTest (1 ms total) 26: 26: [----------] 8 tests from WithParameters/BiasTest 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/0 -26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/0 (0 ms) +26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/0 (1 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/1 26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/1 (1 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/2 @@ -62582,24 +62612,24 @@ 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/3 26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/3 (0 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/4 -26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/4 (0 ms) +26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/4 (1 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/5 26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/5 (0 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/6 -26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/6 (1 ms) +26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/6 (0 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/7 26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/7 (0 ms) -26: [----------] 8 tests from WithParameters/BiasTest (3 ms total) +26: [----------] 8 tests from WithParameters/BiasTest (4 ms total) 26: 26: [----------] 2 tests from WithParameters/BiasStateTest 26: [ RUN ] WithParameters/BiasStateTest.InitializesFromFile/0 26: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/0 (0 ms) 26: [ RUN ] WithParameters/BiasStateTest.InitializesFromFile/1 -26: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/1 (1 ms) -26: [----------] 2 tests from WithParameters/BiasStateTest (1 ms total) +26: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/1 (2 ms) +26: [----------] 2 tests from WithParameters/BiasStateTest (2 ms total) 26: 26: [----------] Global test environment tear-down -26: [==========] 12 tests from 4 test cases ran. (8 ms total) +26: [==========] 12 tests from 4 test cases ran. (7 ms total) 26: [ PASSED ] 12 tests. 26/54 Test #26: AwhTest ............................. Passed 0.02 sec test 27 @@ -62714,7 +62744,7 @@ 27: [ OK ] SimdFloatingpointTest.cvtFloat2Double (0 ms) 27: [ RUN ] SimdFloatingpointTest.cvtDouble2Float 27: [ OK ] SimdFloatingpointTest.cvtDouble2Float (0 ms) -27: [----------] 42 tests from SimdFloatingpointTest (1 ms total) +27: [----------] 42 tests from SimdFloatingpointTest (0 ms total) 27: 27: [----------] 13 tests from SimdFloatingpointUtilTest 27: [ RUN ] SimdFloatingpointUtilTest.gatherLoadTranspose4 @@ -62756,17 +62786,17 @@ 27: 27: [----------] 56 tests from SimdMathTest 27: [ RUN ] SimdMathTest.generateTestPointsDouble -27: [ OK ] SimdMathTest.generateTestPointsDouble (0 ms) +27: [ OK ] SimdMathTest.generateTestPointsDouble (1 ms) 27: [ RUN ] SimdMathTest.copysign 27: [ OK ] SimdMathTest.copysign (0 ms) 27: [ RUN ] SimdMathTest.invsqrt -27: [ OK ] SimdMathTest.invsqrt (1 ms) +27: [ OK ] SimdMathTest.invsqrt (0 ms) 27: [ RUN ] SimdMathTest.maskzInvsqrt 27: [ OK ] SimdMathTest.maskzInvsqrt (0 ms) 27: [ RUN ] SimdMathTest.invsqrtPair 27: [ OK ] SimdMathTest.invsqrtPair (1 ms) 27: [ RUN ] SimdMathTest.sqrt -27: [ OK ] SimdMathTest.sqrt (13 ms) +27: [ OK ] SimdMathTest.sqrt (18 ms) 27: [ RUN ] SimdMathTest.sqrtUnsafe 27: [ OK ] SimdMathTest.sqrtUnsafe (0 ms) 27: [ RUN ] SimdMathTest.inv @@ -62774,15 +62804,15 @@ 27: [ RUN ] SimdMathTest.maskzInv 27: [ OK ] SimdMathTest.maskzInv (0 ms) 27: [ RUN ] SimdMathTest.cbrt -27: [ OK ] SimdMathTest.cbrt (2 ms) +27: [ OK ] SimdMathTest.cbrt (1 ms) 27: [ RUN ] SimdMathTest.invcbrt 27: [ OK ] SimdMathTest.invcbrt (3 ms) 27: [ RUN ] SimdMathTest.log2 27: [ OK ] SimdMathTest.log2 (1 ms) 27: [ RUN ] SimdMathTest.log -27: [ OK ] SimdMathTest.log (0 ms) +27: [ OK ] SimdMathTest.log (1 ms) 27: [ RUN ] SimdMathTest.exp2 -27: [ OK ] SimdMathTest.exp2 (5 ms) +27: [ OK ] SimdMathTest.exp2 (4 ms) 27: [ RUN ] SimdMathTest.exp2Unsafe 27: [ OK ] SimdMathTest.exp2Unsafe (1 ms) 27: [ RUN ] SimdMathTest.exp @@ -62794,11 +62824,11 @@ 27: [ RUN ] SimdMathTest.powUnsafe 27: [ OK ] SimdMathTest.powUnsafe (0 ms) 27: [ RUN ] SimdMathTest.erf -27: [ OK ] SimdMathTest.erf (1 ms) +27: [ OK ] SimdMathTest.erf (2 ms) 27: [ RUN ] SimdMathTest.erfc -27: [ OK ] SimdMathTest.erfc (3 ms) +27: [ OK ] SimdMathTest.erfc (1 ms) 27: [ RUN ] SimdMathTest.sin -27: [ OK ] SimdMathTest.sin (3 ms) +27: [ OK ] SimdMathTest.sin (5 ms) 27: [ RUN ] SimdMathTest.cos 27: [ OK ] SimdMathTest.cos (2 ms) 27: [ RUN ] SimdMathTest.tan @@ -62806,27 +62836,27 @@ 27: [ RUN ] SimdMathTest.asin 27: [ OK ] SimdMathTest.asin (1 ms) 27: [ RUN ] SimdMathTest.acos -27: [ OK ] SimdMathTest.acos (2 ms) +27: [ OK ] SimdMathTest.acos (1 ms) 27: [ RUN ] SimdMathTest.atan -27: [ OK ] SimdMathTest.atan (1 ms) +27: [ OK ] SimdMathTest.atan (3 ms) 27: [ RUN ] SimdMathTest.atan2 27: [ OK ] SimdMathTest.atan2 (0 ms) 27: [ RUN ] SimdMathTest.pmeForceCorrection 27: [ OK ] SimdMathTest.pmeForceCorrection (1 ms) 27: [ RUN ] SimdMathTest.pmePotentialCorrection -27: [ OK ] SimdMathTest.pmePotentialCorrection (2 ms) +27: [ OK ] SimdMathTest.pmePotentialCorrection (1 ms) 27: [ RUN ] SimdMathTest.invsqrtSingleAccuracy 27: [ OK ] SimdMathTest.invsqrtSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.invsqrtPairSingleAccuracy 27: [ OK ] SimdMathTest.invsqrtPairSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.sqrtSingleAccuracy -27: [ OK ] SimdMathTest.sqrtSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.sqrtSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.sqrtSingleAccuracyUnsafe -27: [ OK ] SimdMathTest.sqrtSingleAccuracyUnsafe (0 ms) +27: [ OK ] SimdMathTest.sqrtSingleAccuracyUnsafe (1 ms) 27: [ RUN ] SimdMathTest.invSingleAccuracy -27: [ OK ] SimdMathTest.invSingleAccuracy (3 ms) +27: [ OK ] SimdMathTest.invSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.cbrtSingleAccuracy -27: [ OK ] SimdMathTest.cbrtSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.cbrtSingleAccuracy (4 ms) 27: [ RUN ] SimdMathTest.invcbrtSingleAccuracy 27: [ OK ] SimdMathTest.invcbrtSingleAccuracy (2 ms) 27: [ RUN ] SimdMathTest.log2SingleAccuracy @@ -62836,9 +62866,9 @@ 27: [ RUN ] SimdMathTest.exp2SingleAccuracy 27: [ OK ] SimdMathTest.exp2SingleAccuracy (4 ms) 27: [ RUN ] SimdMathTest.exp2SingleAccuracyUnsafe -27: [ OK ] SimdMathTest.exp2SingleAccuracyUnsafe (1 ms) +27: [ OK ] SimdMathTest.exp2SingleAccuracyUnsafe (0 ms) 27: [ RUN ] SimdMathTest.expSingleAccuracy -27: [ OK ] SimdMathTest.expSingleAccuracy (5 ms) +27: [ OK ] SimdMathTest.expSingleAccuracy (4 ms) 27: [ RUN ] SimdMathTest.expSingleAccuracyUnsafe 27: [ OK ] SimdMathTest.expSingleAccuracyUnsafe (1 ms) 27: [ RUN ] SimdMathTest.powSingleAccuracy @@ -62848,7 +62878,7 @@ 27: [ RUN ] SimdMathTest.erfSingleAccuracy 27: [ OK ] SimdMathTest.erfSingleAccuracy (2 ms) 27: [ RUN ] SimdMathTest.erfcSingleAccuracy -27: [ OK ] SimdMathTest.erfcSingleAccuracy (2 ms) +27: [ OK ] SimdMathTest.erfcSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.sinSingleAccuracy 27: [ OK ] SimdMathTest.sinSingleAccuracy (2 ms) 27: [ RUN ] SimdMathTest.cosSingleAccuracy @@ -62860,14 +62890,14 @@ 27: [ RUN ] SimdMathTest.acosSingleAccuracy 27: [ OK ] SimdMathTest.acosSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.atanSingleAccuracy -27: [ OK ] SimdMathTest.atanSingleAccuracy (2 ms) +27: [ OK ] SimdMathTest.atanSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.atan2SingleAccuracy 27: [ OK ] SimdMathTest.atan2SingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.pmeForceCorrectionSingleAccuracy 27: [ OK ] SimdMathTest.pmeForceCorrectionSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.pmePotentialCorrectionSingleAccuracy 27: [ OK ] SimdMathTest.pmePotentialCorrectionSingleAccuracy (1 ms) -27: [----------] 56 tests from SimdMathTest (93 ms total) +27: [----------] 56 tests from SimdMathTest (94 ms total) 27: 27: [----------] 1 test from EmptyArrayRefTest 27: [ RUN ] EmptyArrayRefTest.IsEmpty @@ -62970,14 +63000,14 @@ 27: [ RUN ] SimdIntegerTest.orB 27: [ OK ] SimdIntegerTest.orB (0 ms) 27: [ RUN ] SimdIntegerTest.anyTrue -27: [ OK ] SimdIntegerTest.anyTrue (0 ms) +27: [ OK ] SimdIntegerTest.anyTrue (1 ms) 27: [ RUN ] SimdIntegerTest.blend 27: [ OK ] SimdIntegerTest.blend (0 ms) 27: [ RUN ] SimdIntegerTest.cvtB2IB 27: [ OK ] SimdIntegerTest.cvtB2IB (0 ms) 27: [ RUN ] SimdIntegerTest.cvtIB2B 27: [ OK ] SimdIntegerTest.cvtIB2B (0 ms) -27: [----------] 23 tests from SimdIntegerTest (0 ms total) +27: [----------] 23 tests from SimdIntegerTest (1 ms total) 27: 27: [----------] 41 tests from SimdScalarTest 27: [ RUN ] SimdScalarTest.load @@ -63081,7 +63111,7 @@ 27: [ OK ] SimdScalarUtilTest.gatherLoadUBySimdIntTranspose (0 ms) 27: [ RUN ] SimdScalarUtilTest.reduceIncr4ReturnSum 27: [ OK ] SimdScalarUtilTest.reduceIncr4ReturnSum (0 ms) -27: [----------] 8 tests from SimdScalarUtilTest (1 ms total) +27: [----------] 8 tests from SimdScalarUtilTest (0 ms total) 27: 27: [----------] 37 tests from SimdScalarMathTest 27: [ RUN ] SimdScalarMathTest.copysign @@ -63296,7 +63326,7 @@ 28: [ OK ] MakeOptionalTest.CanInPlaceCopyConstructFromInitializerListAndArguments (0 ms) 28: [ RUN ] MakeOptionalTest.CanInPlaceMoveConstructFromInitializerListAndArguments 28: [ OK ] MakeOptionalTest.CanInPlaceMoveConstructFromInitializerListAndArguments (0 ms) -28: [----------] 7 tests from MakeOptionalTest (0 ms total) +28: [----------] 7 tests from MakeOptionalTest (1 ms total) 28: 28: [----------] 4 tests from OptionalMemberSwapTest 28: [ RUN ] OptionalMemberSwapTest.CanSwapDisengagedWithDisengaged @@ -63336,7 +63366,7 @@ 28: [ RUN ] OptionalIntValueTest.CanObtainValueViaValueMethodNonConst 28: [ OK ] OptionalIntValueTest.CanObtainValueViaValueMethodNonConst (0 ms) 28: [ RUN ] OptionalIntValueTest.CanObtainMovedValueViaValueMethodConst -28: [ OK ] OptionalIntValueTest.CanObtainMovedValueViaValueMethodConst (1 ms) +28: [ OK ] OptionalIntValueTest.CanObtainMovedValueViaValueMethodConst (0 ms) 28: [ RUN ] OptionalIntValueTest.CanObtainMovedValueViaValueMethodNonConst 28: [ OK ] OptionalIntValueTest.CanObtainMovedValueViaValueMethodNonConst (0 ms) 28: [ RUN ] OptionalIntValueTest.CanObtainValueFromNonEmptyOptionalViaValueOrMethod @@ -63361,7 +63391,7 @@ 28: [ OK ] OptionalIntValueTest.CanNonMemberSwapDisengagnedWithEngaged (0 ms) 28: [ RUN ] OptionalIntValueTest.CanNonMemberSwapEngagnedWithDisengaged 28: [ OK ] OptionalIntValueTest.CanNonMemberSwapEngagnedWithDisengaged (0 ms) -28: [----------] 20 tests from OptionalIntValueTest (1 ms total) +28: [----------] 20 tests from OptionalIntValueTest (0 ms total) 28: 28: [----------] 1 test from NotNullConstruction 28: [ RUN ] NotNullConstruction.Works @@ -63450,7 +63480,7 @@ 28: [ RUN ] StringViewTest.CanCompareSubStringWithViewViaCompare 28: [ OK ] StringViewTest.CanCompareSubStringWithViewViaCompare (0 ms) 28: [ RUN ] StringViewTest.CanCompareSubStringWithSubStringViewViaCompare -28: [ OK ] StringViewTest.CanCompareSubStringWithSubStringViewViaCompare (0 ms) +28: [ OK ] StringViewTest.CanCompareSubStringWithSubStringViewViaCompare (1 ms) 28: [ RUN ] StringViewTest.CanCompareToCStringViaCompare 28: [ OK ] StringViewTest.CanCompareToCStringViaCompare (0 ms) 28: [ RUN ] StringViewTest.CanCompareSubStringToCStringViaCompare @@ -63488,7 +63518,7 @@ 28: [ RUN ] StringViewTest.CanSearchForFirstOccurenceOfAnyCharacterInView 28: [ OK ] StringViewTest.CanSearchForFirstOccurenceOfAnyCharacterInView (0 ms) 28: [ RUN ] StringViewTest.CanSearchForFirstOccurenceOfCharacter -28: [ OK ] StringViewTest.CanSearchForFirstOccurenceOfCharacter (0 ms) +28: [ OK ] StringViewTest.CanSearchForFirstOccurenceOfCharacter (1 ms) 28: [ RUN ] StringViewTest.CanSearchForFirstOccurenceOfCharactersInCStringInLenght 28: [ OK ] StringViewTest.CanSearchForFirstOccurenceOfCharactersInCStringInLenght (0 ms) 28: [ RUN ] StringViewTest.CanSearchForFirstOccurenceOfCharactersInCString @@ -63508,7 +63538,7 @@ 28: [ RUN ] StringViewTest.CanSearchForFirstNonEqualToAnyCharacterInCStringInLength 28: [ OK ] StringViewTest.CanSearchForFirstNonEqualToAnyCharacterInCStringInLength (0 ms) 28: [ RUN ] StringViewTest.CanSearchForFirstNonEqualToAnyCharacterInCString -28: [ OK ] StringViewTest.CanSearchForFirstNonEqualToAnyCharacterInCString (1 ms) +28: [ OK ] StringViewTest.CanSearchForFirstNonEqualToAnyCharacterInCString (0 ms) 28: [ RUN ] StringViewTest.CanBackwardsSearchForForstNonFoundCharacterInView 28: [ OK ] StringViewTest.CanBackwardsSearchForForstNonFoundCharacterInView (0 ms) 28: [ RUN ] StringViewTest.CanBackwardsSearchForFirstNonMatchingCharacter @@ -63549,7 +63579,7 @@ 28: [ OK ] StringViewTest.HashOfU16StringViewIsEqualToHashOfString (0 ms) 28: [ RUN ] StringViewTest.HashOfU32StringViewIsEqualToHashOfString 28: [ OK ] StringViewTest.HashOfU32StringViewIsEqualToHashOfString (0 ms) -28: [----------] 80 tests from StringViewTest (1 ms total) +28: [----------] 80 tests from StringViewTest (8 ms total) 28: 28: [----------] 5 tests from StringViewExtensionTest 28: [ RUN ] StringViewExtensionTest.CanConstructViewFromString @@ -63565,9 +63595,9 @@ 28: [----------] 5 tests from StringViewExtensionTest (0 ms total) 28: 28: [----------] Global test environment tear-down -28: [==========] 170 tests from 12 test cases ran. (3 ms total) +28: [==========] 170 tests from 12 test cases ran. (9 ms total) 28: [ PASSED ] 170 tests. -28/54 Test #28: CompatibilityHelpersTests ........... Passed 0.07 sec +28/54 Test #28: CompatibilityHelpersTests ........... Passed 0.04 sec test 29 Start 29: GmxAnaTest @@ -63612,7 +63642,7 @@ 29: Reading frame 0 time 0.000 Last frame 0 time 0.000 29: Selected 2: 'atom3' 29: Selected 3: 'atoms12' -29: [ OK ] MindistTest.mindistWorksWithMultipleAtoms (1 ms) +29: [ OK ] MindistTest.mindistWorksWithMultipleAtoms (7 ms) 29: [ RUN ] MindistTest.mindistDoesNotPickUpContacts 29: Group 0 ( atom1) has 1 elements 29: Group 1 ( atom2) has 1 elements @@ -63636,7 +63666,7 @@ 29: Reading frame 0 time 0.000 Last frame 0 time 0.000 29: Selected 0: 'atom1' 29: Selected 1: 'atom2' -29: [ OK ] MindistTest.mindistPicksUpContacts (0 ms) +29: [ OK ] MindistTest.mindistPicksUpContacts (1 ms) 29: [ RUN ] MindistTest.ngWorks 29: Group 0 ( atom1) has 1 elements 29: Group 1 ( atom2) has 1 elements @@ -63649,7 +63679,7 @@ 29: Selected 0: 'atom1' 29: Selected 1: 'atom2' 29: Selected 2: 'atom3' -29: [ OK ] MindistTest.ngWorks (6 ms) +29: [ OK ] MindistTest.ngWorks (1 ms) 29: [ RUN ] MindistTest.groupWorks 29: Group 0 ( atom1) has 1 elements 29: Group 1 ( atom2) has 1 elements @@ -63673,7 +63703,7 @@ 29: Reading frame 0 time 0.000 Last frame 0 time 0.000 29: Selected 2: 'atom3' 29: Selected 3: 'atoms12' -29: [ OK ] MindistTest.maxDistWorks (0 ms) +29: [ OK ] MindistTest.maxDistWorks (1 ms) 29: [ RUN ] MindistTest.noPbcWorks 29: Group 0 ( atom1) has 1 elements 29: Group 1 ( atom2) has 1 elements @@ -63697,7 +63727,7 @@ 29: Reading frame 0 time 0.000 Last frame 0 time 0.000 29: Selected 3: 'atoms12' 29: Selected 2: 'atom3' -29: [ OK ] MindistTest.resPerTimeWorks (5 ms) +29: [ OK ] MindistTest.resPerTimeWorks (1 ms) 29: [ RUN ] MindistTest.matrixWorks 29: Group 0 ( atom1) has 1 elements 29: Group 1 ( atom2) has 1 elements @@ -63710,7 +63740,7 @@ 29: Selected 5: 'atoms123' 29: Special case: making distance matrix between all atoms in group atoms123 29: [ OK ] MindistTest.matrixWorks (1 ms) -29: [----------] 10 tests from MindistTest (17 ms total) +29: [----------] 10 tests from MindistTest (16 ms total) 29: 29: [----------] 3 tests from MsdTest 29: [ RUN ] MsdTest.threeDimensionalDiffusion @@ -63725,7 +63755,7 @@ 29: Fitting from 1 to 8 ps 29: 29: D[ particles] 4.0000 (+/- 0.0000) 1e-5 cm^2/s -29: [ OK ] MsdTest.threeDimensionalDiffusion (1 ms) +29: [ OK ] MsdTest.threeDimensionalDiffusion (2 ms) 29: [ RUN ] MsdTest.twoDimensionalDiffusion 29: 29: Select a group to calculate mean squared displacement for: @@ -63738,7 +63768,7 @@ 29: Fitting from 1 to 8 ps 29: 29: D[ particles] 6.0000 (+/- 0.0000) 1e-5 cm^2/s -29: [ OK ] MsdTest.twoDimensionalDiffusion (0 ms) +29: [ OK ] MsdTest.twoDimensionalDiffusion (1 ms) 29: [ RUN ] MsdTest.oneDimensionalDiffusion 29: 29: Select a group to calculate mean squared displacement for: @@ -63751,8 +63781,8 @@ 29: Fitting from 1 to 8 ps 29: 29: D[ particles] 8.0000 (+/- 0.0000) 1e-5 cm^2/s -29: [ OK ] MsdTest.oneDimensionalDiffusion (1 ms) -29: [----------] 3 tests from MsdTest (2 ms total) +29: [ OK ] MsdTest.oneDimensionalDiffusion (0 ms) +29: [----------] 3 tests from MsdTest (3 ms total) 29: 29: [----------] 3 tests from MsdMolTest 29: [ RUN ] MsdMolTest.diffMolMassWeighted @@ -63761,7 +63791,7 @@ 29: For a correct single-point energy evaluation with nsteps = 0, use 29: continuation = yes to avoid constraining the input coordinates. 29: -29: Setting the LD random seed to -17057953 +29: Setting the LD random seed to -134273 29: Generated 330891 of the 330891 non-bonded parameter combinations 29: Generating 1-4 interactions: fudge = 0.5 29: Generated 330891 of the 330891 1-4 parameter combinations @@ -63798,14 +63828,14 @@ 29: Fitting from 0.008 to 0.088 ps 29: 29: D[ water] 6.5741 (+/- 0.7753) 1e-5 cm^2/s -29: [ OK ] MsdMolTest.diffMolMassWeighted (1015 ms) +29: [ OK ] MsdMolTest.diffMolMassWeighted (725 ms) 29: [ RUN ] MsdMolTest.diffMolNonMassWeighted 29: 29: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests/Testing/Temporary/MsdMolTest_diffMolNonMassWeighted.mdp]: 29: For a correct single-point energy evaluation with nsteps = 0, use 29: continuation = yes to avoid constraining the input coordinates. 29: -29: Setting the LD random seed to -722075813 +29: Setting the LD random seed to -1409810836 29: Generated 330891 of the 330891 non-bonded parameter combinations 29: Generating 1-4 interactions: fudge = 0.5 29: Generated 330891 of the 330891 1-4 parameter combinations @@ -63842,14 +63872,14 @@ 29: Fitting from 0.008 to 0.088 ps 29: 29: D[ water] 6.5741 (+/- 0.7753) 1e-5 cm^2/s -29: [ OK ] MsdMolTest.diffMolNonMassWeighted (579 ms) +29: [ OK ] MsdMolTest.diffMolNonMassWeighted (751 ms) 29: [ RUN ] MsdMolTest.diffMolSelected 29: 29: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxana/tests/Testing/Temporary/MsdMolTest_diffMolSelected.mdp]: 29: For a correct single-point energy evaluation with nsteps = 0, use 29: continuation = yes to avoid constraining the input coordinates. 29: -29: Setting the LD random seed to 2130181115 +29: Setting the LD random seed to -35824689 29: Generated 330891 of the 330891 non-bonded parameter combinations 29: Generating 1-4 interactions: fudge = 0.5 29: Generated 330891 of the 330891 1-4 parameter combinations @@ -63886,8 +63916,8 @@ 29: Fitting from 0.008 to 0.088 ps 29: 29: D[ mol] 7.8614 (+/- 1.5619) 1e-5 cm^2/s -29: [ OK ] MsdMolTest.diffMolSelected (703 ms) -29: [----------] 3 tests from MsdMolTest (2297 ms total) +29: [ OK ] MsdMolTest.diffMolSelected (682 ms) +29: [----------] 3 tests from MsdMolTest (2159 ms total) 29: 29: [----------] 6 tests from NoFatalErrorWhenWritingFrom/GmxTraj 29: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/0 @@ -63911,7 +63941,7 @@ 29: Group 2 ( SOL) has 6 elements 29: Select a group: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Selected 0: 'System' -29: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/2 (1 ms) +29: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/2 (2 ms) 29: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/3 29: Group 0 ( System) has 6 elements 29: Group 1 ( Water) has 6 elements @@ -63935,12 +63965,12 @@ 29: Select a group: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Selected 0: 'System' 29: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/5 (2 ms) -29: [----------] 6 tests from NoFatalErrorWhenWritingFrom/GmxTraj (8 ms total) +29: [----------] 6 tests from NoFatalErrorWhenWritingFrom/GmxTraj (9 ms total) 29: 29: [----------] Global test environment tear-down -29: [==========] 27 tests from 5 test cases ran. (2324 ms total) +29: [==========] 27 tests from 5 test cases ran. (2187 ms total) 29: [ PASSED ] 27 tests. -29/54 Test #29: GmxAnaTest .......................... Passed 2.36 sec +29/54 Test #29: GmxAnaTest .......................... Passed 2.21 sec test 30 Start 30: GmxPreprocessTests @@ -63950,7 +63980,7 @@ 30: [----------] Global test environment set-up. 30: [----------] 4 tests from GenconfTest 30: [ RUN ] GenconfTest.nbox_Works -30: [ OK ] GenconfTest.nbox_Works (0 ms) +30: [ OK ] GenconfTest.nbox_Works (1 ms) 30: [ RUN ] GenconfTest.nbox_norenumber_Works 30: [ OK ] GenconfTest.nbox_norenumber_Works (1 ms) 30: [ RUN ] GenconfTest.nbox_dist_Works @@ -63969,7 +63999,7 @@ 30: center of geometry: 1.733667, 1.477000, 0.905167 30: center of geometry: 1.733667, 1.477000, 0.905167 30: [ OK ] GenconfTest.nbox_rot_Works (1 ms) -30: [----------] 4 tests from GenconfTest (2 ms total) +30: [----------] 4 tests from GenconfTest (3 ms total) 30: 30: [----------] 2 tests from GenionTest 30: [ RUN ] GenionTest.HighConcentrationIonPlacement @@ -63984,7 +64014,7 @@ 30: For a correct single-point energy evaluation with nsteps = 0, use 30: continuation = yes to avoid constraining the input coordinates. 30: -30: Setting the LD random seed to -408946209 +30: Setting the LD random seed to -1077953025 30: Generated 331705 of the 331705 non-bonded parameter combinations 30: Generating 1-4 interactions: fudge = 0.5 30: Generated 331705 of the 331705 1-4 parameter combinations @@ -64026,7 +64056,7 @@ 30: Will try to add 4 NA ions and 4 CL ions. 30: Select a continuous group of solvent molecules 30: Selected 1: 'Water' -30: [ OK ] GenionTest.HighConcentrationIonPlacement (698 ms) +30: [ OK ] GenionTest.HighConcentrationIonPlacement (729 ms) 30: [ RUN ] GenionTest.NoIonPlacement 30: 30: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GenionTest_NoIonPlacement_input.mdp]: @@ -64039,7 +64069,7 @@ 30: For a correct single-point energy evaluation with nsteps = 0, use 30: continuation = yes to avoid constraining the input coordinates. 30: -30: Setting the LD random seed to -86017 +30: Setting the LD random seed to -623124551 30: Generated 331705 of the 331705 non-bonded parameter combinations 30: Generating 1-4 interactions: fudge = 0.5 30: Generated 331705 of the 331705 1-4 parameter combinations @@ -64062,8 +64092,8 @@ 30: There are: 1 Other residues 30: Analysing residues not classified as Protein/DNA/RNA/Water and splitting into groups... 30: This run will generate roughly 0 Mb of data -30: [ OK ] GenionTest.NoIonPlacement (622 ms) -30: [----------] 2 tests from GenionTest (1320 ms total) +30: [ OK ] GenionTest.NoIonPlacement (686 ms) +30: [----------] 2 tests from GenionTest (1415 ms total) 30: 30: [----------] 1 test from GenRestrTest 30: [ RUN ] GenRestrTest.SimpleRestraintsGenerated @@ -64081,8 +64111,8 @@ 30: Group 9 ( SideChain-H) has 35 elements 30: Select a group: Select group to position restrain 30: Selected 3: 'C-alpha' -30: [ OK ] GenRestrTest.SimpleRestraintsGenerated (4 ms) -30: [----------] 1 test from GenRestrTest (4 ms total) +30: [ OK ] GenRestrTest.SimpleRestraintsGenerated (2 ms) +30: [----------] 1 test from GenRestrTest (2 ms total) 30: 30: [----------] 9 tests from PreprocessingAtomTypesTest 30: [ RUN ] PreprocessingAtomTypesTest.EmptyOnCreate @@ -64157,7 +64187,7 @@ 30: Writing generated configuration to /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesIntoExistingConfiguration_out.gro 30: 30: Output configuration contains 8 atoms in 4 residues -30: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoExistingConfiguration (2 ms) +30: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoExistingConfiguration (1 ms) 30: [ RUN ] InsertMoleculesTest.InsertsMoleculesIntoEmptyBox 30: Initialising inter-atomic distances... 30: @@ -64189,7 +64219,7 @@ 30: Writing generated configuration to /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesIntoEmptyBox_out.gro 30: 30: Output configuration contains 10 atoms in 10 residues -30: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoEmptyBox (2 ms) +30: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoEmptyBox (1 ms) 30: [ RUN ] InsertMoleculesTest.InsertsMoleculesIntoEnlargedBox 30: Reading solute configuration 30: Initialising inter-atomic distances... @@ -64219,7 +64249,7 @@ 30: Writing generated configuration to /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesIntoEnlargedBox_out.gro 30: 30: Output configuration contains 10 atoms in 4 residues -30: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoEnlargedBox (12 ms) +30: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoEnlargedBox (2 ms) 30: [ RUN ] InsertMoleculesTest.InsertsMoleculesWithReplacement 30: Reading solute configuration 30: Initialising inter-atomic distances... @@ -64252,7 +64282,7 @@ 30: Writing generated configuration to /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesWithReplacement_out.gro 30: 30: Output configuration contains 632 atoms in 212 residues -30: [ OK ] InsertMoleculesTest.InsertsMoleculesWithReplacement (10 ms) +30: [ OK ] InsertMoleculesTest.InsertsMoleculesWithReplacement (6 ms) 30: [ RUN ] InsertMoleculesTest.InsertsMoleculesIntoFixedPositions 30: Initialising inter-atomic distances... 30: @@ -64286,7 +64316,7 @@ 30: 30: Output configuration contains 6 atoms in 3 residues 30: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoFixedPositions (2 ms) -30: [----------] 5 tests from InsertMoleculesTest (28 ms total) +30: [----------] 5 tests from InsertMoleculesTest (12 ms total) 30: 30: [----------] 14 tests from GetIrTest 30: [ RUN ] GetIrTest.HandlesDifferentKindsOfMdpLines @@ -64297,7 +64327,7 @@ 30: For a correct single-point energy evaluation with nsteps = 0, use 30: continuation = yes to avoid constraining the input coordinates. 30: -30: [ OK ] GetIrTest.HandlesDifferentKindsOfMdpLines (11 ms) +30: [ OK ] GetIrTest.HandlesDifferentKindsOfMdpLines (2 ms) 30: [ RUN ] GetIrTest.RejectsNonCommentLineWithNoEquals 30: [ OK ] GetIrTest.RejectsNonCommentLineWithNoEquals (10 ms) 30: [ RUN ] GetIrTest.AcceptsKeyWithoutValue @@ -64310,7 +64340,7 @@ 30: [ RUN ] GetIrTest.RejectsValueWithoutKey 30: [ OK ] GetIrTest.RejectsValueWithoutKey (9 ms) 30: [ RUN ] GetIrTest.RejectsEmptyKeyAndEmptyValue -30: [ OK ] GetIrTest.RejectsEmptyKeyAndEmptyValue (13 ms) +30: [ OK ] GetIrTest.RejectsEmptyKeyAndEmptyValue (9 ms) 30: [ RUN ] GetIrTest.AcceptsDefineParametersWithValuesIncludingAssignment 30: 30: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_AcceptsDefineParametersWithValuesIncludingAssignment_input.mdp]: @@ -64324,7 +64354,7 @@ 30: For a correct single-point energy evaluation with nsteps = 0, use 30: continuation = yes to avoid constraining the input coordinates. 30: -30: [ OK ] GetIrTest.AcceptsEmptyLines (4 ms) +30: [ OK ] GetIrTest.AcceptsEmptyLines (2 ms) 30: [ RUN ] GetIrTest.AcceptsElectricField 30: 30: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_AcceptsElectricField_input.mdp]: @@ -64338,14 +64368,14 @@ 30: For a correct single-point energy evaluation with nsteps = 0, use 30: continuation = yes to avoid constraining the input coordinates. 30: -30: [ OK ] GetIrTest.AcceptsElectricFieldPulsed (4 ms) +30: [ OK ] GetIrTest.AcceptsElectricFieldPulsed (2 ms) 30: [ RUN ] GetIrTest.AcceptsElectricFieldOscillating 30: 30: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_AcceptsElectricFieldOscillating_input.mdp]: 30: For a correct single-point energy evaluation with nsteps = 0, use 30: continuation = yes to avoid constraining the input coordinates. 30: -30: [ OK ] GetIrTest.AcceptsElectricFieldOscillating (3 ms) +30: [ OK ] GetIrTest.AcceptsElectricFieldOscillating (2 ms) 30: [ RUN ] GetIrTest.RejectsDuplicateOldAndNewKeys 30: [ OK ] GetIrTest.RejectsDuplicateOldAndNewKeys (6 ms) 30: [ RUN ] GetIrTest.AcceptsImplicitSolventNo @@ -64356,15 +64386,15 @@ 30: 30: [ OK ] GetIrTest.AcceptsImplicitSolventNo (3 ms) 30: [ RUN ] GetIrTest.RejectsImplicitSolventYes -30: [ OK ] GetIrTest.RejectsImplicitSolventYes (10 ms) +30: [ OK ] GetIrTest.RejectsImplicitSolventYes (9 ms) 30: [ RUN ] GetIrTest.AcceptsMimic 30: 30: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_AcceptsMimic_input.mdp]: 30: For a correct single-point energy evaluation with nsteps = 0, use 30: continuation = yes to avoid constraining the input coordinates. 30: -30: [ OK ] GetIrTest.AcceptsMimic (4 ms) -30: [----------] 14 tests from GetIrTest (86 ms total) +30: [ OK ] GetIrTest.AcceptsMimic (3 ms) +30: [----------] 14 tests from GetIrTest (66 ms total) 30: 30: [----------] 5 tests from SolvateTest 30: [ RUN ] SolvateTest.cs_box_Works @@ -64404,7 +64434,7 @@ 30: Density : 1056.36 (g/l) 30: Number of solvent molecules: 47 30: -30: [ OK ] SolvateTest.cs_box_Works (13 ms) +30: [ OK ] SolvateTest.cs_box_Works (8 ms) 30: [ RUN ] SolvateTest.cs_cp_Works 30: Reading solute configuration 30: Reading solvent configuration @@ -64444,7 +64474,7 @@ 30: Density : 974.777 (g/l) 30: Number of solvent molecules: 886 30: -30: [ OK ] SolvateTest.cs_cp_Works (109 ms) +30: [ OK ] SolvateTest.cs_cp_Works (44 ms) 30: [ RUN ] SolvateTest.cs_cp_p_Works 30: Reading solute configuration 30: Reading solvent configuration @@ -64486,7 +64516,7 @@ 30: 30: Processing topology 30: Adding line for 886 solvent molecules with resname (SOL) to topology file (/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_cs_cp_p_Works_spc-and-methanol.top) -30: [ OK ] SolvateTest.cs_cp_p_Works (115 ms) +30: [ OK ] SolvateTest.cs_cp_p_Works (45 ms) 30: [ RUN ] SolvateTest.shell_Works 30: Reading solute configuration 30: Reading solvent configuration @@ -64527,7 +64557,7 @@ 30: Density : 279.3 (g/l) 30: Number of solvent molecules: 252 30: -30: [ OK ] SolvateTest.shell_Works (50 ms) +30: [ OK ] SolvateTest.shell_Works (20 ms) 30: [ RUN ] SolvateTest.update_Topology_Works 30: Reading solute configuration 30: Reading solvent configuration @@ -64571,8 +64601,8 @@ 30: Processing topology 30: Adding line for 1876 solvent molecules with resname (HOH) to topology file (/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_update_Topology_Works_simple.top) 30: Adding line for 2169 solvent molecules with resname (SOL) to topology file (/build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_update_Topology_Works_simple.top) -30: [ OK ] SolvateTest.update_Topology_Works (451 ms) -30: [----------] 5 tests from SolvateTest (738 ms total) +30: [ OK ] SolvateTest.update_Topology_Works (183 ms) +30: [----------] 5 tests from SolvateTest (300 ms total) 30: 30: [----------] 1 test from TopDirTests 30: [ RUN ] TopDirTests.NamesArrayHasCorrectSize @@ -64580,9 +64610,9 @@ 30: [----------] 1 test from TopDirTests (0 ms total) 30: 30: [----------] Global test environment tear-down -30: [==========] 51 tests from 9 test cases ran. (2178 ms total) +30: [==========] 51 tests from 9 test cases ran. (1798 ms total) 30: [ PASSED ] 51 tests. -30/54 Test #30: GmxPreprocessTests .................. Passed 2.21 sec +30/54 Test #30: GmxPreprocessTests .................. Passed 1.82 sec test 31 Start 31: Pdb2gmx1Test @@ -64649,7 +64679,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 31: The Oplsaa force field and the tip3p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/0 (108 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/0 (88 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/1 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -64709,7 +64739,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 31: The Oplsaa force field and the tip3p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/1 (119 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/1 (101 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/2 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -64767,7 +64797,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 31: The Oplsaa force field and the tip3p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/2 (108 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/2 (88 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/3 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -64825,7 +64855,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 31: The Oplsaa force field and the tip3p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/3 (97 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/3 (80 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/4 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -64887,7 +64917,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 31: The Oplsaa force field and the tip3p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/4 (115 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/4 (94 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/5 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -64950,7 +64980,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 31: The Oplsaa force field and the tip3p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/5 (128 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/5 (101 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/6 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -65011,7 +65041,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 31: The Oplsaa force field and the tip3p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/6 (120 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/6 (97 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/7 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -65072,7 +65102,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 31: The Oplsaa force field and the tip3p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/7 (106 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/7 (85 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/8 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -65131,7 +65161,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 31: The Oplsaa force field and the tip4p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/8 (109 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/8 (87 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/9 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -65191,7 +65221,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 31: The Oplsaa force field and the tip4p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/9 (122 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/9 (98 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/10 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -65249,7 +65279,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 31: The Oplsaa force field and the tip4p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/10 (109 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/10 (87 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/11 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -65307,7 +65337,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 31: The Oplsaa force field and the tip4p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/11 (99 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/11 (79 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/12 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -65369,7 +65399,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 31: The Oplsaa force field and the tip4p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/12 (115 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/12 (93 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/13 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -65432,7 +65462,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 31: The Oplsaa force field and the tip4p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/13 (127 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/13 (102 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/14 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -65493,7 +65523,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 31: The Oplsaa force field and the tip4p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/14 (119 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/14 (97 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/15 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -65554,7 +65584,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 31: The Oplsaa force field and the tip4p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/15 (108 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/15 (85 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/16 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -65613,7 +65643,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 31: The Oplsaa force field and the tip5p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/16 (106 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/16 (86 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/17 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -65673,7 +65703,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 31: The Oplsaa force field and the tip5p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/17 (122 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/17 (97 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/18 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -65731,7 +65761,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 31: The Oplsaa force field and the tip5p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/18 (108 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/18 (88 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/19 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -65789,7 +65819,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 31: The Oplsaa force field and the tip5p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/19 (97 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/19 (78 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/20 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -65851,7 +65881,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 31: The Oplsaa force field and the tip5p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/20 (112 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/20 (92 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/21 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -65914,7 +65944,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 31: The Oplsaa force field and the tip5p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/21 (125 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/21 (102 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/22 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -65975,7 +66005,7 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 31: The Oplsaa force field and the tip5p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/22 (120 ms) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/22 (96 ms) 31: [ RUN ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/23 31: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/oplsaa.ff/aminoacids.r2b 31: All occupancies are one @@ -66036,13 +66066,13 @@ 31: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 31: The Oplsaa force field and the tip5p water model are used. 31: --------- ETON ESAELP ------------ -31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/23 (107 ms) -31: [----------] 24 tests from ForOplsaa/Pdb2gmxTest (2706 ms total) +31: [ OK ] ForOplsaa/Pdb2gmxTest.ProducesMatchingTopology/23 (85 ms) +31: [----------] 24 tests from ForOplsaa/Pdb2gmxTest (2188 ms total) 31: 31: [----------] Global test environment tear-down -31: [==========] 24 tests from 1 test case ran. (2706 ms total) +31: [==========] 24 tests from 1 test case ran. (2188 ms total) 31: [ PASSED ] 24 tests. -31/54 Test #31: Pdb2gmx1Test ........................ Passed 2.74 sec +31/54 Test #31: Pdb2gmx1Test ........................ Passed 2.20 sec test 32 Start 32: Pdb2gmx2Test @@ -66124,7 +66154,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 32: The Gromos43a1 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/0 (128 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/0 (50 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/1 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -66199,7 +66229,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 32: The Gromos43a1 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/1 (118 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/1 (58 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/2 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -66272,7 +66302,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 32: The Gromos43a1 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/2 (67 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/2 (49 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/3 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -66345,7 +66375,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 32: The Gromos43a1 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/3 (59 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/3 (44 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/4 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -66422,7 +66452,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 32: The Gromos43a1 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/4 (110 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/4 (49 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/5 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -66500,7 +66530,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 32: The Gromos43a1 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/5 (77 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/5 (60 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/6 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -66576,7 +66606,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 32: The Gromos43a1 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/6 (66 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/6 (52 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/7 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -66652,7 +66682,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 32: The Gromos43a1 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/7 (61 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/7 (47 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/8 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -66726,7 +66756,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 32: The Gromos43a1 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/8 (62 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/8 (47 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/9 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -66801,7 +66831,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 32: The Gromos43a1 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/9 (74 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/9 (57 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/10 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -66874,7 +66904,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 32: The Gromos43a1 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/10 (64 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/10 (48 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/11 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -66947,7 +66977,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 32: The Gromos43a1 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/11 (58 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/11 (45 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/12 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -67024,7 +67054,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 32: The Gromos43a1 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/12 (63 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/12 (49 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/13 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -67102,7 +67132,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 32: The Gromos43a1 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/13 (77 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/13 (59 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/14 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -67178,7 +67208,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 32: The Gromos43a1 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/14 (66 ms) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/14 (51 ms) 32: [ RUN ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/15 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos43a1.ff/aminoacids.r2b 32: All occupancies are one @@ -67254,8 +67284,8 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 32: The Gromos43a1 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/15 (75 ms) -32: [----------] 16 tests from ForGromos43a1/Pdb2gmxTest (1226 ms total) +32: [ OK ] ForGromos43a1/Pdb2gmxTest.ProducesMatchingTopology/15 (47 ms) +32: [----------] 16 tests from ForGromos43a1/Pdb2gmxTest (814 ms total) 32: 32: [----------] 16 tests from ForGromos53a6/Pdb2gmxTest 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/0 @@ -67335,7 +67365,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 32: The Gromos53a6 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/0 (71 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/0 (53 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/1 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -67414,7 +67444,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 32: The Gromos53a6 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/1 (153 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/1 (63 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/2 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -67491,7 +67521,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 32: The Gromos53a6 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/2 (134 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/2 (57 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/3 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -67568,7 +67598,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 32: The Gromos53a6 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/3 (127 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/3 (49 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/4 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -67649,7 +67679,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 32: The Gromos53a6 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/4 (142 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/4 (54 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/5 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -67731,7 +67761,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 32: The Gromos53a6 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/5 (169 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/5 (64 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/6 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -67811,7 +67841,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 32: The Gromos53a6 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/6 (144 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/6 (56 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/7 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -67891,7 +67921,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 32: The Gromos53a6 force field and the spc water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/7 (126 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/7 (51 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/8 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -67969,7 +67999,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 32: The Gromos53a6 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/8 (128 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/8 (53 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/9 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -68048,7 +68078,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 32: The Gromos53a6 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/9 (148 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/9 (62 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/10 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -68125,7 +68155,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 32: The Gromos53a6 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/10 (84 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/10 (54 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/11 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -68202,7 +68232,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 32: The Gromos53a6 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/11 (66 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/11 (49 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/12 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -68283,7 +68313,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 32: The Gromos53a6 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/12 (71 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/12 (54 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/13 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -68365,7 +68395,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 32: The Gromos53a6 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/13 (86 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/13 (65 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/14 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -68445,7 +68475,7 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 32: The Gromos53a6 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/14 (78 ms) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/14 (55 ms) 32: [ RUN ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/15 32: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/gromos53a6.ff/aminoacids.r2b 32: All occupancies are one @@ -68525,13 +68555,13 @@ 32: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 32: The Gromos53a6 force field and the spce water model are used. 32: --------- ETON ESAELP ------------ -32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/15 (69 ms) -32: [----------] 16 tests from ForGromos53a6/Pdb2gmxTest (1796 ms total) +32: [ OK ] ForGromos53a6/Pdb2gmxTest.ProducesMatchingTopology/15 (51 ms) +32: [----------] 16 tests from ForGromos53a6/Pdb2gmxTest (892 ms total) 32: 32: [----------] Global test environment tear-down -32: [==========] 32 tests from 2 test cases ran. (3022 ms total) +32: [==========] 32 tests from 2 test cases ran. (1706 ms total) 32: [ PASSED ] 32 tests. -32/54 Test #32: Pdb2gmx2Test ........................ Passed 3.06 sec +32/54 Test #32: Pdb2gmx2Test ........................ Passed 1.72 sec test 33 Start 33: Pdb2gmx3Test @@ -68607,7 +68637,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 33: The Amber99sb-ildn force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/0 (192 ms) +33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/0 (91 ms) 33: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/1 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/dna.r2b @@ -68676,7 +68706,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 33: The Amber99sb-ildn force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/1 (174 ms) +33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/1 (93 ms) 33: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/2 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/dna.r2b @@ -68743,7 +68773,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 33: The Amber99sb-ildn force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/2 (91 ms) +33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/2 (93 ms) 33: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/3 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/dna.r2b @@ -68810,7 +68840,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 33: The Amber99sb-ildn force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/3 (82 ms) +33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/3 (84 ms) 33: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/4 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/dna.r2b @@ -68881,7 +68911,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 33: The Amber99sb-ildn force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/4 (97 ms) +33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/4 (98 ms) 33: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/5 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/dna.r2b @@ -68953,7 +68983,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 33: The Amber99sb-ildn force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/5 (110 ms) +33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/5 (107 ms) 33: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/6 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/dna.r2b @@ -69023,7 +69053,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment3.pdb. 33: The Amber99sb-ildn force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/6 (105 ms) +33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/6 (83 ms) 33: [ RUN ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/7 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/amber99sb-ildn.ff/dna.r2b @@ -69093,8 +69123,8 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 33: The Amber99sb-ildn force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/7 (92 ms) -33: [----------] 8 tests from ForAmber99sb_ildn/Pdb2gmxTest (943 ms total) +33: [ OK ] ForAmber99sb_ildn/Pdb2gmxTest.ProducesMatchingTopology/7 (73 ms) +33: [----------] 8 tests from ForAmber99sb_ildn/Pdb2gmxTest (723 ms total) 33: 33: [----------] 8 tests from ForCharmm27/Pdb2gmxTest 33: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/0 @@ -69171,7 +69201,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/0 (96 ms) +33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/0 (77 ms) 33: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/1 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -69247,7 +69277,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/1 (105 ms) +33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/1 (99 ms) 33: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/2 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -69395,7 +69425,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/3 (84 ms) +33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/3 (86 ms) 33: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/4 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -69473,7 +69503,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment1.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/4 (104 ms) +33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/4 (105 ms) 33: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/5 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -69552,7 +69582,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment2.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/5 (113 ms) +33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/5 (112 ms) 33: [ RUN ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/6 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -69706,8 +69736,8 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/fragment4.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/7 (96 ms) -33: [----------] 8 tests from ForCharmm27/Pdb2gmxTest (795 ms total) +33: [ OK ] ForCharmm27/Pdb2gmxTest.ProducesMatchingTopology/7 (90 ms) +33: [----------] 8 tests from ForCharmm27/Pdb2gmxTest (767 ms total) 33: 33: [----------] 8 tests from ChainSep/Pdb2gmxTest 33: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/0 @@ -69795,7 +69825,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/0 (105 ms) +33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/0 (104 ms) 33: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/1 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -69930,7 +69960,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/1 (70 ms) +33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/1 (56 ms) 33: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/2 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -70016,7 +70046,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/2 (102 ms) +33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/2 (74 ms) 33: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/3 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -70151,7 +70181,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/3 (72 ms) +33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/3 (49 ms) 33: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/4 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -70241,7 +70271,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/4 (104 ms) +33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/4 (92 ms) 33: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/5 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -70402,7 +70432,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/5 (69 ms) +33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/5 (64 ms) 33: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/6 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -70484,7 +70514,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/6 (100 ms) +33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/6 (93 ms) 33: [ RUN ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/7 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -70592,8 +70622,8 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/chainTer.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/7 (76 ms) -33: [----------] 8 tests from ChainSep/Pdb2gmxTest (698 ms total) +33: [ OK ] ChainSep/Pdb2gmxTest.ProducesMatchingTopology/7 (65 ms) +33: [----------] 8 tests from ChainSep/Pdb2gmxTest (597 ms total) 33: 33: [----------] 4 tests from ChainChanges/Pdb2gmxTest 33: [ RUN ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/0 @@ -70694,7 +70724,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/two-fragments.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/0 (48 ms) +33: [ OK ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/0 (44 ms) 33: [ RUN ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/1 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -70793,7 +70823,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/two-fragments.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/1 (49 ms) +33: [ OK ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/1 (43 ms) 33: [ RUN ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/2 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -70892,7 +70922,7 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/two-fragments.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/2 (48 ms) +33: [ OK ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/2 (37 ms) 33: [ RUN ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/3 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/aminoacids.r2b 33: Opening force field file /build/reproducible-path/gromacs-2020.6/share/top/charmm27.ff/rna.r2b @@ -70991,13 +71021,13 @@ 33: You have successfully generated a topology from: /build/reproducible-path/gromacs-2020.6/src/gromacs/gmxpreprocess/tests/two-fragments.pdb. 33: The Charmm27 force field and the tip3p water model are used. 33: --------- ETON ESAELP ------------ -33: [ OK ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/3 (48 ms) -33: [----------] 4 tests from ChainChanges/Pdb2gmxTest (193 ms total) +33: [ OK ] ChainChanges/Pdb2gmxTest.ProducesMatchingTopology/3 (34 ms) +33: [----------] 4 tests from ChainChanges/Pdb2gmxTest (158 ms total) 33: 33: [----------] Global test environment tear-down -33: [==========] 28 tests from 4 test cases ran. (2629 ms total) +33: [==========] 28 tests from 4 test cases ran. (2245 ms total) 33: [ PASSED ] 28 tests. -33/54 Test #33: Pdb2gmx3Test ........................ Passed 2.67 sec +33/54 Test #33: Pdb2gmx3Test ........................ Passed 2.26 sec test 34 Start 34: CorrelationsTest @@ -71007,45 +71037,45 @@ 34: [----------] Global test environment set-up. 34: [----------] 10 tests from AutocorrTest 34: [ RUN ] AutocorrTest.EacNormal -34: [ OK ] AutocorrTest.EacNormal (116 ms) +34: [ OK ] AutocorrTest.EacNormal (73 ms) 34: [ RUN ] AutocorrTest.EacNoNormalize -34: [ OK ] AutocorrTest.EacNoNormalize (75 ms) +34: [ OK ] AutocorrTest.EacNoNormalize (41 ms) 34: [ RUN ] AutocorrTest.EacCos -34: [ OK ] AutocorrTest.EacCos (139 ms) +34: [ OK ] AutocorrTest.EacCos (79 ms) 34: [ RUN ] AutocorrTest.EacVector -34: [ OK ] AutocorrTest.EacVector (216 ms) +34: [ OK ] AutocorrTest.EacVector (100 ms) 34: [ RUN ] AutocorrTest.EacRcross -34: [ OK ] AutocorrTest.EacRcross (1 ms) +34: [ OK ] AutocorrTest.EacRcross (2 ms) 34: [ RUN ] AutocorrTest.EacP0 -34: [ OK ] AutocorrTest.EacP0 (223 ms) +34: [ OK ] AutocorrTest.EacP0 (115 ms) 34: [ RUN ] AutocorrTest.EacP1 -34: [ OK ] AutocorrTest.EacP1 (221 ms) +34: [ OK ] AutocorrTest.EacP1 (115 ms) 34: [ RUN ] AutocorrTest.EacP2 -34: [ OK ] AutocorrTest.EacP2 (435 ms) +34: [ OK ] AutocorrTest.EacP2 (237 ms) 34: [ RUN ] AutocorrTest.EacP3 34: [ OK ] AutocorrTest.EacP3 (4 ms) 34: [ RUN ] AutocorrTest.EacP4 -34: [ OK ] AutocorrTest.EacP4 (215 ms) -34: [----------] 10 tests from AutocorrTest (1648 ms total) +34: [ OK ] AutocorrTest.EacP4 (108 ms) +34: [----------] 10 tests from AutocorrTest (874 ms total) 34: 34: [----------] 1 test from ManyAutocorrelationTest 34: [ RUN ] ManyAutocorrelationTest.Empty -34: [ OK ] ManyAutocorrelationTest.Empty (0 ms) -34: [----------] 1 test from ManyAutocorrelationTest (0 ms total) +34: [ OK ] ManyAutocorrelationTest.Empty (1 ms) +34: [----------] 1 test from ManyAutocorrelationTest (1 ms total) 34: 34: [----------] 10 tests from ExpfitTest 34: [ RUN ] ExpfitTest.EffnEXP1 34: [ OK ] ExpfitTest.EffnEXP1 (1 ms) 34: [ RUN ] ExpfitTest.EffnEXP2 -34: [ OK ] ExpfitTest.EffnEXP2 (1 ms) +34: [ OK ] ExpfitTest.EffnEXP2 (0 ms) 34: [ RUN ] ExpfitTest.EffnEXPEXP -34: [ OK ] ExpfitTest.EffnEXPEXP (2 ms) +34: [ OK ] ExpfitTest.EffnEXPEXP (9 ms) 34: [ RUN ] ExpfitTest.EffnEXP5 -34: [ OK ] ExpfitTest.EffnEXP5 (16 ms) +34: [ OK ] ExpfitTest.EffnEXP5 (6 ms) 34: [ RUN ] ExpfitTest.EffnEXP7 -34: [ OK ] ExpfitTest.EffnEXP7 (13 ms) +34: [ OK ] ExpfitTest.EffnEXP7 (12 ms) 34: [ RUN ] ExpfitTest.EffnEXP9 -34: [ OK ] ExpfitTest.EffnEXP9 (27 ms) +34: [ OK ] ExpfitTest.EffnEXP9 (18 ms) 34: [ RUN ] ExpfitTest.EffnERF 34: [ OK ] ExpfitTest.EffnERF (3 ms) 34: [ RUN ] ExpfitTest.EffnERREST @@ -71053,13 +71083,13 @@ 34: [ RUN ] ExpfitTest.EffnVAC 34: [ OK ] ExpfitTest.EffnVAC (7 ms) 34: [ RUN ] ExpfitTest.EffnPRES -34: [ OK ] ExpfitTest.EffnPRES (19 ms) -34: [----------] 10 tests from ExpfitTest (90 ms total) +34: [ OK ] ExpfitTest.EffnPRES (18 ms) +34: [----------] 10 tests from ExpfitTest (76 ms total) 34: 34: [----------] Global test environment tear-down -34: [==========] 21 tests from 3 test cases ran. (1755 ms total) +34: [==========] 21 tests from 3 test cases ran. (956 ms total) 34: [ PASSED ] 21 tests. -34/54 Test #34: CorrelationsTest .................... Passed 1.79 sec +34/54 Test #34: CorrelationsTest .................... Passed 0.97 sec test 35 Start 35: AnalysisDataUnitTests @@ -71078,17 +71108,17 @@ 35: 35: [----------] 8 tests from AnalysisDataCommonTest/0, where TypeParam = (anonymous namespace)::SimpleInputData 35: [ RUN ] AnalysisDataCommonTest/0.CallsModuleCorrectly -35: [ OK ] AnalysisDataCommonTest/0.CallsModuleCorrectly (0 ms) +35: [ OK ] AnalysisDataCommonTest/0.CallsModuleCorrectly (1 ms) 35: [ RUN ] AnalysisDataCommonTest/0.CallsParallelModuleCorrectly -35: [ OK ] AnalysisDataCommonTest/0.CallsParallelModuleCorrectly (1 ms) +35: [ OK ] AnalysisDataCommonTest/0.CallsParallelModuleCorrectly (0 ms) 35: [ RUN ] AnalysisDataCommonTest/0.CallsMixedModulesCorrectly -35: [ OK ] AnalysisDataCommonTest/0.CallsMixedModulesCorrectly (0 ms) +35: [ OK ] AnalysisDataCommonTest/0.CallsMixedModulesCorrectly (1 ms) 35: [ RUN ] AnalysisDataCommonTest/0.CallsColumnModuleCorrectly -35: [ OK ] AnalysisDataCommonTest/0.CallsColumnModuleCorrectly (1 ms) +35: [ OK ] AnalysisDataCommonTest/0.CallsColumnModuleCorrectly (0 ms) 35: [ RUN ] AnalysisDataCommonTest/0.CallsModuleCorrectlyWithOutOfOrderFrames -35: [ OK ] AnalysisDataCommonTest/0.CallsModuleCorrectlyWithOutOfOrderFrames (0 ms) +35: [ OK ] AnalysisDataCommonTest/0.CallsModuleCorrectlyWithOutOfOrderFrames (1 ms) 35: [ RUN ] AnalysisDataCommonTest/0.FullStorageWorks -35: [ OK ] AnalysisDataCommonTest/0.FullStorageWorks (1 ms) +35: [ OK ] AnalysisDataCommonTest/0.FullStorageWorks (0 ms) 35: [ RUN ] AnalysisDataCommonTest/0.CanAddModuleAfterStoredData 35: [ OK ] AnalysisDataCommonTest/0.CanAddModuleAfterStoredData (0 ms) 35: [ RUN ] AnalysisDataCommonTest/0.LimitedStorageWorks @@ -71097,7 +71127,7 @@ 35: 35: [----------] 8 tests from AnalysisDataCommonTest/1, where TypeParam = (anonymous namespace)::DataSetsInputData 35: [ RUN ] AnalysisDataCommonTest/1.CallsModuleCorrectly -35: [ OK ] AnalysisDataCommonTest/1.CallsModuleCorrectly (9 ms) +35: [ OK ] AnalysisDataCommonTest/1.CallsModuleCorrectly (1 ms) 35: [ RUN ] AnalysisDataCommonTest/1.CallsParallelModuleCorrectly 35: [ OK ] AnalysisDataCommonTest/1.CallsParallelModuleCorrectly (0 ms) 35: [ RUN ] AnalysisDataCommonTest/1.CallsMixedModulesCorrectly @@ -71112,32 +71142,32 @@ 35: [ OK ] AnalysisDataCommonTest/1.CanAddModuleAfterStoredData (0 ms) 35: [ RUN ] AnalysisDataCommonTest/1.LimitedStorageWorks 35: [ OK ] AnalysisDataCommonTest/1.LimitedStorageWorks (1 ms) -35: [----------] 8 tests from AnalysisDataCommonTest/1 (12 ms total) +35: [----------] 8 tests from AnalysisDataCommonTest/1 (4 ms total) 35: 35: [----------] 8 tests from AnalysisDataCommonTest/2, where TypeParam = (anonymous namespace)::MultipointInputData 35: [ RUN ] AnalysisDataCommonTest/2.CallsModuleCorrectly 35: [ OK ] AnalysisDataCommonTest/2.CallsModuleCorrectly (0 ms) 35: [ RUN ] AnalysisDataCommonTest/2.CallsParallelModuleCorrectly -35: [ OK ] AnalysisDataCommonTest/2.CallsParallelModuleCorrectly (5 ms) +35: [ OK ] AnalysisDataCommonTest/2.CallsParallelModuleCorrectly (1 ms) 35: [ RUN ] AnalysisDataCommonTest/2.CallsMixedModulesCorrectly 35: [ OK ] AnalysisDataCommonTest/2.CallsMixedModulesCorrectly (0 ms) 35: [ RUN ] AnalysisDataCommonTest/2.CallsColumnModuleCorrectly 35: [ OK ] AnalysisDataCommonTest/2.CallsColumnModuleCorrectly (1 ms) 35: [ RUN ] AnalysisDataCommonTest/2.CallsModuleCorrectlyWithOutOfOrderFrames -35: [ OK ] AnalysisDataCommonTest/2.CallsModuleCorrectlyWithOutOfOrderFrames (1 ms) +35: [ OK ] AnalysisDataCommonTest/2.CallsModuleCorrectlyWithOutOfOrderFrames (0 ms) 35: [ RUN ] AnalysisDataCommonTest/2.FullStorageWorks -35: [ OK ] AnalysisDataCommonTest/2.FullStorageWorks (0 ms) +35: [ OK ] AnalysisDataCommonTest/2.FullStorageWorks (1 ms) 35: [ RUN ] AnalysisDataCommonTest/2.CanAddModuleAfterStoredData 35: [ OK ] AnalysisDataCommonTest/2.CanAddModuleAfterStoredData (0 ms) 35: [ RUN ] AnalysisDataCommonTest/2.LimitedStorageWorks -35: [ OK ] AnalysisDataCommonTest/2.LimitedStorageWorks (1 ms) -35: [----------] 8 tests from AnalysisDataCommonTest/2 (8 ms total) +35: [ OK ] AnalysisDataCommonTest/2.LimitedStorageWorks (0 ms) +35: [----------] 8 tests from AnalysisDataCommonTest/2 (3 ms total) 35: 35: [----------] 8 tests from AnalysisDataCommonTest/3, where TypeParam = (anonymous namespace)::MultipointDataSetsInputData 35: [ RUN ] AnalysisDataCommonTest/3.CallsModuleCorrectly -35: [ OK ] AnalysisDataCommonTest/3.CallsModuleCorrectly (4 ms) +35: [ OK ] AnalysisDataCommonTest/3.CallsModuleCorrectly (1 ms) 35: [ RUN ] AnalysisDataCommonTest/3.CallsParallelModuleCorrectly -35: [ OK ] AnalysisDataCommonTest/3.CallsParallelModuleCorrectly (1 ms) +35: [ OK ] AnalysisDataCommonTest/3.CallsParallelModuleCorrectly (0 ms) 35: [ RUN ] AnalysisDataCommonTest/3.CallsMixedModulesCorrectly 35: [ OK ] AnalysisDataCommonTest/3.CallsMixedModulesCorrectly (1 ms) 35: [ RUN ] AnalysisDataCommonTest/3.CallsColumnModuleCorrectly @@ -71147,42 +71177,42 @@ 35: [ RUN ] AnalysisDataCommonTest/3.FullStorageWorks 35: [ OK ] AnalysisDataCommonTest/3.FullStorageWorks (0 ms) 35: [ RUN ] AnalysisDataCommonTest/3.CanAddModuleAfterStoredData -35: [ OK ] AnalysisDataCommonTest/3.CanAddModuleAfterStoredData (1 ms) +35: [ OK ] AnalysisDataCommonTest/3.CanAddModuleAfterStoredData (0 ms) 35: [ RUN ] AnalysisDataCommonTest/3.LimitedStorageWorks -35: [ OK ] AnalysisDataCommonTest/3.LimitedStorageWorks (0 ms) -35: [----------] 8 tests from AnalysisDataCommonTest/3 (8 ms total) +35: [ OK ] AnalysisDataCommonTest/3.LimitedStorageWorks (1 ms) +35: [----------] 8 tests from AnalysisDataCommonTest/3 (4 ms total) 35: 35: [----------] 4 tests from AnalysisArrayDataTest 35: [ RUN ] AnalysisArrayDataTest.CallsModuleCorrectly -35: [ OK ] AnalysisArrayDataTest.CallsModuleCorrectly (5 ms) +35: [ OK ] AnalysisArrayDataTest.CallsModuleCorrectly (0 ms) 35: [ RUN ] AnalysisArrayDataTest.StorageWorks 35: [ OK ] AnalysisArrayDataTest.StorageWorks (0 ms) 35: [ RUN ] AnalysisArrayDataTest.CanSetXAxis 35: [ OK ] AnalysisArrayDataTest.CanSetXAxis (0 ms) 35: [ RUN ] AnalysisArrayDataTest.CanSetXAxisBeforeRowCount 35: [ OK ] AnalysisArrayDataTest.CanSetXAxisBeforeRowCount (0 ms) -35: [----------] 4 tests from AnalysisArrayDataTest (5 ms total) +35: [----------] 4 tests from AnalysisArrayDataTest (0 ms total) 35: 35: [----------] 6 tests from AverageModuleTest 35: [ RUN ] AverageModuleTest.BasicTest 35: [ OK ] AverageModuleTest.BasicTest (1 ms) 35: [ RUN ] AverageModuleTest.HandlesMultipointData -35: [ OK ] AverageModuleTest.HandlesMultipointData (0 ms) +35: [ OK ] AverageModuleTest.HandlesMultipointData (1 ms) 35: [ RUN ] AverageModuleTest.HandlesMultipleDataSets -35: [ OK ] AverageModuleTest.HandlesMultipleDataSets (1 ms) +35: [ OK ] AverageModuleTest.HandlesMultipleDataSets (0 ms) 35: [ RUN ] AverageModuleTest.HandlesDataSetAveraging -35: [ OK ] AverageModuleTest.HandlesDataSetAveraging (5 ms) +35: [ OK ] AverageModuleTest.HandlesDataSetAveraging (1 ms) 35: [ RUN ] AverageModuleTest.CanCustomizeXAxis 35: [ OK ] AverageModuleTest.CanCustomizeXAxis (1 ms) 35: [ RUN ] AverageModuleTest.CanCustomizeNonUniformXAxis -35: [ OK ] AverageModuleTest.CanCustomizeNonUniformXAxis (1 ms) -35: [----------] 6 tests from AverageModuleTest (9 ms total) +35: [ OK ] AverageModuleTest.CanCustomizeNonUniformXAxis (0 ms) +35: [----------] 6 tests from AverageModuleTest (4 ms total) 35: 35: [----------] 2 tests from FrameAverageModuleTest 35: [ RUN ] FrameAverageModuleTest.BasicTest -35: [ OK ] FrameAverageModuleTest.BasicTest (0 ms) +35: [ OK ] FrameAverageModuleTest.BasicTest (1 ms) 35: [ RUN ] FrameAverageModuleTest.HandlesMultipleDataSets -35: [ OK ] FrameAverageModuleTest.HandlesMultipleDataSets (1 ms) +35: [ OK ] FrameAverageModuleTest.HandlesMultipleDataSets (0 ms) 35: [----------] 2 tests from FrameAverageModuleTest (1 ms total) 35: 35: [----------] 7 tests from AnalysisHistogramSettingsTest @@ -71204,10 +71234,10 @@ 35: 35: [----------] 2 tests from SimpleHistogramModuleTest 35: [ RUN ] SimpleHistogramModuleTest.ComputesCorrectly -35: [ OK ] SimpleHistogramModuleTest.ComputesCorrectly (5 ms) +35: [ OK ] SimpleHistogramModuleTest.ComputesCorrectly (1 ms) 35: [ RUN ] SimpleHistogramModuleTest.ComputesCorrectlyWithAll 35: [ OK ] SimpleHistogramModuleTest.ComputesCorrectlyWithAll (1 ms) -35: [----------] 2 tests from SimpleHistogramModuleTest (7 ms total) +35: [----------] 2 tests from SimpleHistogramModuleTest (2 ms total) 35: 35: [----------] 3 tests from WeightedHistogramModuleTest 35: [ RUN ] WeightedHistogramModuleTest.ComputesCorrectly @@ -71215,42 +71245,42 @@ 35: [ RUN ] WeightedHistogramModuleTest.ComputesCorrectlyWithAll 35: [ OK ] WeightedHistogramModuleTest.ComputesCorrectlyWithAll (1 ms) 35: [ RUN ] WeightedHistogramModuleTest.HandlesMultipleDataSets -35: [ OK ] WeightedHistogramModuleTest.HandlesMultipleDataSets (5 ms) -35: [----------] 3 tests from WeightedHistogramModuleTest (7 ms total) +35: [ OK ] WeightedHistogramModuleTest.HandlesMultipleDataSets (1 ms) +35: [----------] 3 tests from WeightedHistogramModuleTest (3 ms total) 35: 35: [----------] 3 tests from BinAverageModuleTest 35: [ RUN ] BinAverageModuleTest.ComputesCorrectly 35: [ OK ] BinAverageModuleTest.ComputesCorrectly (1 ms) 35: [ RUN ] BinAverageModuleTest.ComputesCorrectlyWithAll -35: [ OK ] BinAverageModuleTest.ComputesCorrectlyWithAll (1 ms) +35: [ OK ] BinAverageModuleTest.ComputesCorrectlyWithAll (0 ms) 35: [ RUN ] BinAverageModuleTest.HandlesMultipleDataSets -35: [ OK ] BinAverageModuleTest.HandlesMultipleDataSets (0 ms) +35: [ OK ] BinAverageModuleTest.HandlesMultipleDataSets (1 ms) 35: [----------] 3 tests from BinAverageModuleTest (2 ms total) 35: 35: [----------] 4 tests from AbstractAverageHistogramTest 35: [ RUN ] AbstractAverageHistogramTest.ClonesCorrectly -35: [ OK ] AbstractAverageHistogramTest.ClonesCorrectly (6 ms) +35: [ OK ] AbstractAverageHistogramTest.ClonesCorrectly (1 ms) 35: [ RUN ] AbstractAverageHistogramTest.ComputesCumulativeHistogram 35: [ OK ] AbstractAverageHistogramTest.ComputesCumulativeHistogram (1 ms) 35: [ RUN ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidth 35: [ OK ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidth (1 ms) 35: [ RUN ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidthWithIntegerBins 35: [ OK ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidthWithIntegerBins (1 ms) -35: [----------] 4 tests from AbstractAverageHistogramTest (9 ms total) +35: [----------] 4 tests from AbstractAverageHistogramTest (4 ms total) 35: 35: [----------] 3 tests from LifetimeModuleTest 35: [ RUN ] LifetimeModuleTest.BasicTest -35: [ OK ] LifetimeModuleTest.BasicTest (4 ms) +35: [ OK ] LifetimeModuleTest.BasicTest (0 ms) 35: [ RUN ] LifetimeModuleTest.CumulativeTest 35: [ OK ] LifetimeModuleTest.CumulativeTest (1 ms) 35: [ RUN ] LifetimeModuleTest.HandlesMultipleDataSets -35: [ OK ] LifetimeModuleTest.HandlesMultipleDataSets (1 ms) -35: [----------] 3 tests from LifetimeModuleTest (6 ms total) +35: [ OK ] LifetimeModuleTest.HandlesMultipleDataSets (0 ms) +35: [----------] 3 tests from LifetimeModuleTest (1 ms total) 35: 35: [----------] Global test environment tear-down -35: [==========] 69 tests from 14 test cases ran. (77 ms total) +35: [==========] 69 tests from 14 test cases ran. (31 ms total) 35: [ PASSED ] 69 tests. -35/54 Test #35: AnalysisDataUnitTests ............... Passed 0.12 sec +35/54 Test #35: AnalysisDataUnitTests ............... Passed 0.05 sec test 36 Start 36: CoordinateIOTests @@ -71268,8 +71298,8 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] OutputSelectorDeathTest.RejectsBadSelection (23 ms) -36: [----------] 1 test from OutputSelectorDeathTest (23 ms total) +36: [ OK ] OutputSelectorDeathTest.RejectsBadSelection (7 ms) +36: [----------] 1 test from OutputSelectorDeathTest (7 ms total) 36: 36: [----------] 5 tests from TrajectoryFrameWriterTest 36: [ RUN ] TrajectoryFrameWriterTest.RejectsWrongFiletype @@ -71281,7 +71311,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] TrajectoryFrameWriterTest.RejectsWrongFiletype (4 ms) +36: [ OK ] TrajectoryFrameWriterTest.RejectsWrongFiletype (5 ms) 36: [ RUN ] TrajectoryFrameWriterTest.BuilderFailsWithPdbAndNoAtoms 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -71291,7 +71321,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] TrajectoryFrameWriterTest.BuilderFailsWithPdbAndNoAtoms (12 ms) +36: [ OK ] TrajectoryFrameWriterTest.BuilderFailsWithPdbAndNoAtoms (4 ms) 36: [ RUN ] TrajectoryFrameWriterTest.BuilderFailsWithGroAndNoAtoms 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -71319,10 +71349,10 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] TrajectoryFrameWriterTest.BuilderImplictlyAddsAtoms (17 ms) +36: [ OK ] TrajectoryFrameWriterTest.BuilderImplictlyAddsAtoms (9 ms) 36: [ RUN ] TrajectoryFrameWriterTest.TNGOutputWorks 36: [ OK ] TrajectoryFrameWriterTest.TNGOutputWorks (0 ms) -36: [----------] 5 tests from TrajectoryFrameWriterTest (38 ms total) +36: [----------] 5 tests from TrajectoryFrameWriterTest (23 ms total) 36: 36: [----------] 5 tests from OutputAdapterContainer 36: [ RUN ] OutputAdapterContainer.MakeEmpty @@ -71360,7 +71390,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] SetAtomsTest.RemovesExistingAtoms (13 ms) +36: [ OK ] SetAtomsTest.RemovesExistingAtoms (5 ms) 36: [ RUN ] SetAtomsTest.AddsNewAtoms 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -71380,7 +71410,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] SetAtomsTest.ThrowsOnRequiredAtomsNotAvailable (12 ms) +36: [ OK ] SetAtomsTest.ThrowsOnRequiredAtomsNotAvailable (5 ms) 36: [ RUN ] SetAtomsTest.WillUseOldAtomsWhenNoNewAvailable 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -71390,7 +71420,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] SetAtomsTest.WillUseOldAtomsWhenNoNewAvailable (4 ms) +36: [ OK ] SetAtomsTest.WillUseOldAtomsWhenNoNewAvailable (5 ms) 36: [ RUN ] SetAtomsTest.ThrowsWhenUserAtomReplacementNotPossible 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -71400,8 +71430,8 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] SetAtomsTest.ThrowsWhenUserAtomReplacementNotPossible (13 ms) -36: [----------] 5 tests from SetAtomsTest (46 ms total) +36: [ OK ] SetAtomsTest.ThrowsWhenUserAtomReplacementNotPossible (4 ms) +36: [----------] 5 tests from SetAtomsTest (23 ms total) 36: 36: [----------] 2 tests from SetBothTimeTest 36: [ RUN ] SetBothTimeTest.StartTimeZeroWorks @@ -71432,7 +71462,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/0 (12 ms) +36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/0 (5 ms) 36: [ RUN ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/1 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -71442,7 +71472,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/1 (5 ms) +36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/1 (4 ms) 36: [ RUN ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/2 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -71452,7 +71482,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/2 (12 ms) +36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/2 (4 ms) 36: [ RUN ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/3 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -71472,7 +71502,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/4 (12 ms) +36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/4 (4 ms) 36: [ RUN ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/5 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -71483,7 +71513,7 @@ 36: files if necessary. 36: 36: [ OK ] CoordinateFileFileFormats/TrajectoryFrameWriterTest.WorksWithFormats/5 (5 ms) -36: [----------] 6 tests from CoordinateFileFileFormats/TrajectoryFrameWriterTest (50 ms total) +36: [----------] 6 tests from CoordinateFileFileFormats/TrajectoryFrameWriterTest (28 ms total) 36: 36: [----------] 3 tests from ModuleSupported/SetAtomsSupportedFiles 36: [ RUN ] ModuleSupported/SetAtomsSupportedFiles.Works/0 @@ -71495,7 +71525,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/SetAtomsSupportedFiles.Works/0 (8 ms) +36: [ OK ] ModuleSupported/SetAtomsSupportedFiles.Works/0 (4 ms) 36: [ RUN ] ModuleSupported/SetAtomsSupportedFiles.Works/1 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -71505,7 +71535,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/SetAtomsSupportedFiles.Works/1 (12 ms) +36: [ OK ] ModuleSupported/SetAtomsSupportedFiles.Works/1 (4 ms) 36: [ RUN ] ModuleSupported/SetAtomsSupportedFiles.Works/2 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -71515,17 +71545,17 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/SetAtomsSupportedFiles.Works/2 (4 ms) -36: [----------] 3 tests from ModuleSupported/SetAtomsSupportedFiles (24 ms total) +36: [ OK ] ModuleSupported/SetAtomsSupportedFiles.Works/2 (5 ms) +36: [----------] 3 tests from ModuleSupported/SetAtomsSupportedFiles (13 ms total) 36: 36: [----------] 3 tests from ModuleUnSupported/SetAtomsUnSupportedFiles 36: [ RUN ] ModuleUnSupported/SetAtomsUnSupportedFiles.Works/0 -36: [ OK ] ModuleUnSupported/SetAtomsUnSupportedFiles.Works/0 (1 ms) +36: [ OK ] ModuleUnSupported/SetAtomsUnSupportedFiles.Works/0 (0 ms) 36: [ RUN ] ModuleUnSupported/SetAtomsUnSupportedFiles.Works/1 36: [ OK ] ModuleUnSupported/SetAtomsUnSupportedFiles.Works/1 (0 ms) 36: [ RUN ] ModuleUnSupported/SetAtomsUnSupportedFiles.Works/2 36: [ OK ] ModuleUnSupported/SetAtomsUnSupportedFiles.Works/2 (0 ms) -36: [----------] 3 tests from ModuleUnSupported/SetAtomsUnSupportedFiles (1 ms total) +36: [----------] 3 tests from ModuleUnSupported/SetAtomsUnSupportedFiles (0 ms total) 36: 36: [----------] 4 tests from ModuleSupported/AnyOutputSupportedFiles 36: [ RUN ] ModuleSupported/AnyOutputSupportedFiles.Works/0 @@ -71545,7 +71575,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/AnyOutputSupportedFiles.Works/0 (24 ms) +36: [ OK ] ModuleSupported/AnyOutputSupportedFiles.Works/0 (9 ms) 36: [ RUN ] ModuleSupported/AnyOutputSupportedFiles.Works/1 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -71563,7 +71593,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/AnyOutputSupportedFiles.Works/1 (17 ms) +36: [ OK ] ModuleSupported/AnyOutputSupportedFiles.Works/1 (9 ms) 36: [ RUN ] ModuleSupported/AnyOutputSupportedFiles.Works/2 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -71581,7 +71611,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/AnyOutputSupportedFiles.Works/2 (17 ms) +36: [ OK ] ModuleSupported/AnyOutputSupportedFiles.Works/2 (9 ms) 36: [ RUN ] ModuleSupported/AnyOutputSupportedFiles.Works/3 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -71599,8 +71629,8 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/AnyOutputSupportedFiles.Works/3 (16 ms) -36: [----------] 4 tests from ModuleSupported/AnyOutputSupportedFiles (74 ms total) +36: [ OK ] ModuleSupported/AnyOutputSupportedFiles.Works/3 (9 ms) +36: [----------] 4 tests from ModuleSupported/AnyOutputSupportedFiles (36 ms total) 36: 36: [----------] 3 tests from ModuleSupported/SetVelocitySupportedFiles 36: [ RUN ] ModuleSupported/SetVelocitySupportedFiles.Works/0 @@ -71622,7 +71652,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/SetVelocitySupportedFiles.Works/1 (12 ms) +36: [ OK ] ModuleSupported/SetVelocitySupportedFiles.Works/1 (4 ms) 36: [ RUN ] ModuleSupported/SetVelocitySupportedFiles.Works/2 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -71633,16 +71663,16 @@ 36: files if necessary. 36: 36: [ OK ] ModuleSupported/SetVelocitySupportedFiles.Works/2 (4 ms) -36: [----------] 3 tests from ModuleSupported/SetVelocitySupportedFiles (21 ms total) +36: [----------] 3 tests from ModuleSupported/SetVelocitySupportedFiles (14 ms total) 36: 36: [----------] 3 tests from ModuleUnSupported/SetVelocityUnSupportedFiles 36: [ RUN ] ModuleUnSupported/SetVelocityUnSupportedFiles.Works/0 36: [ OK ] ModuleUnSupported/SetVelocityUnSupportedFiles.Works/0 (0 ms) 36: [ RUN ] ModuleUnSupported/SetVelocityUnSupportedFiles.Works/1 -36: [ OK ] ModuleUnSupported/SetVelocityUnSupportedFiles.Works/1 (1 ms) +36: [ OK ] ModuleUnSupported/SetVelocityUnSupportedFiles.Works/1 (0 ms) 36: [ RUN ] ModuleUnSupported/SetVelocityUnSupportedFiles.Works/2 36: [ OK ] ModuleUnSupported/SetVelocityUnSupportedFiles.Works/2 (0 ms) -36: [----------] 3 tests from ModuleUnSupported/SetVelocityUnSupportedFiles (1 ms total) +36: [----------] 3 tests from ModuleUnSupported/SetVelocityUnSupportedFiles (0 ms total) 36: 36: [----------] 2 tests from ModuleSupported/SetForceSupportedFiles 36: [ RUN ] ModuleSupported/SetForceSupportedFiles.Works/0 @@ -71654,7 +71684,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/SetForceSupportedFiles.Works/0 (12 ms) +36: [ OK ] ModuleSupported/SetForceSupportedFiles.Works/0 (5 ms) 36: [ RUN ] ModuleSupported/SetForceSupportedFiles.Works/1 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -71664,19 +71694,19 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/SetForceSupportedFiles.Works/1 (12 ms) -36: [----------] 2 tests from ModuleSupported/SetForceSupportedFiles (24 ms total) +36: [ OK ] ModuleSupported/SetForceSupportedFiles.Works/1 (4 ms) +36: [----------] 2 tests from ModuleSupported/SetForceSupportedFiles (9 ms total) 36: 36: [----------] 4 tests from ModuleUnSupported/SetForceUnSupportedFiles 36: [ RUN ] ModuleUnSupported/SetForceUnSupportedFiles.Works/0 -36: [ OK ] ModuleUnSupported/SetForceUnSupportedFiles.Works/0 (1 ms) +36: [ OK ] ModuleUnSupported/SetForceUnSupportedFiles.Works/0 (0 ms) 36: [ RUN ] ModuleUnSupported/SetForceUnSupportedFiles.Works/1 36: [ OK ] ModuleUnSupported/SetForceUnSupportedFiles.Works/1 (0 ms) 36: [ RUN ] ModuleUnSupported/SetForceUnSupportedFiles.Works/2 36: [ OK ] ModuleUnSupported/SetForceUnSupportedFiles.Works/2 (0 ms) 36: [ RUN ] ModuleUnSupported/SetForceUnSupportedFiles.Works/3 36: [ OK ] ModuleUnSupported/SetForceUnSupportedFiles.Works/3 (0 ms) -36: [----------] 4 tests from ModuleUnSupported/SetForceUnSupportedFiles (1 ms total) +36: [----------] 4 tests from ModuleUnSupported/SetForceUnSupportedFiles (0 ms total) 36: 36: [----------] 2 tests from ModuleSupported/SetPrecisionSupportedFiles 36: [ RUN ] ModuleSupported/SetPrecisionSupportedFiles.Works/0 @@ -71688,7 +71718,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/SetPrecisionSupportedFiles.Works/0 (4 ms) +36: [ OK ] ModuleSupported/SetPrecisionSupportedFiles.Works/0 (5 ms) 36: [ RUN ] ModuleSupported/SetPrecisionSupportedFiles.Works/1 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -71698,8 +71728,8 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/SetPrecisionSupportedFiles.Works/1 (12 ms) -36: [----------] 2 tests from ModuleSupported/SetPrecisionSupportedFiles (16 ms total) +36: [ OK ] ModuleSupported/SetPrecisionSupportedFiles.Works/1 (4 ms) +36: [----------] 2 tests from ModuleSupported/SetPrecisionSupportedFiles (9 ms total) 36: 36: [----------] 4 tests from ModuleUnSupported/SetPrecisionUnSupportedFiles 36: [ RUN ] ModuleUnSupported/SetPrecisionUnSupportedFiles.Works/0 @@ -71707,10 +71737,10 @@ 36: [ RUN ] ModuleUnSupported/SetPrecisionUnSupportedFiles.Works/1 36: [ OK ] ModuleUnSupported/SetPrecisionUnSupportedFiles.Works/1 (0 ms) 36: [ RUN ] ModuleUnSupported/SetPrecisionUnSupportedFiles.Works/2 -36: [ OK ] ModuleUnSupported/SetPrecisionUnSupportedFiles.Works/2 (1 ms) +36: [ OK ] ModuleUnSupported/SetPrecisionUnSupportedFiles.Works/2 (0 ms) 36: [ RUN ] ModuleUnSupported/SetPrecisionUnSupportedFiles.Works/3 36: [ OK ] ModuleUnSupported/SetPrecisionUnSupportedFiles.Works/3 (0 ms) -36: [----------] 4 tests from ModuleUnSupported/SetPrecisionUnSupportedFiles (1 ms total) +36: [----------] 4 tests from ModuleUnSupported/SetPrecisionUnSupportedFiles (0 ms total) 36: 36: [----------] 4 tests from ModuleSupported/NoOptionalOutput 36: [ RUN ] ModuleSupported/NoOptionalOutput.Works/0 @@ -71722,7 +71752,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/NoOptionalOutput.Works/0 (4 ms) +36: [ OK ] ModuleSupported/NoOptionalOutput.Works/0 (5 ms) 36: [ RUN ] ModuleSupported/NoOptionalOutput.Works/1 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -71732,7 +71762,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/NoOptionalOutput.Works/1 (12 ms) +36: [ OK ] ModuleSupported/NoOptionalOutput.Works/1 (4 ms) 36: [ RUN ] ModuleSupported/NoOptionalOutput.Works/2 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -71742,7 +71772,7 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/NoOptionalOutput.Works/2 (4 ms) +36: [ OK ] ModuleSupported/NoOptionalOutput.Works/2 (5 ms) 36: [ RUN ] ModuleSupported/NoOptionalOutput.Works/3 36: 36: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -71752,13 +71782,13 @@ 36: and radius of the atom type. Please check the output 36: files if necessary. 36: -36: [ OK ] ModuleSupported/NoOptionalOutput.Works/3 (13 ms) -36: [----------] 4 tests from ModuleSupported/NoOptionalOutput (33 ms total) +36: [ OK ] ModuleSupported/NoOptionalOutput.Works/3 (4 ms) +36: [----------] 4 tests from ModuleSupported/NoOptionalOutput (18 ms total) 36: 36: [----------] Global test environment tear-down -36: [==========] 64 tests from 19 test cases ran. (353 ms total) +36: [==========] 64 tests from 19 test cases ran. (180 ms total) 36: [ PASSED ] 64 tests. -36/54 Test #36: CoordinateIOTests ................... Passed 0.40 sec +36/54 Test #36: CoordinateIOTests ................... Passed 0.20 sec test 37 Start 37: TrajectoryAnalysisUnitTests @@ -71775,7 +71805,7 @@ 37: Total number of atoms in clusters = 24 37: cmid: 2, cmax: 4, max_size: 6 37: 16% 33% 50% 66% 83%100%cmid: 6, cmax: 18, max_size: 6 -37: 16% 33% 50% 66% 83%100%[ OK ] ClustsizeTest.NoMolDefaultCutoff (1 ms) +37: 16% 33% 50% 66% 83%100%[ OK ] ClustsizeTest.NoMolDefaultCutoff (2 ms) 37: [ RUN ] ClustsizeTest.NoMolShortCutoff 37: Reading frames from pdb file Reading frame 0 time 0.000 Group 0 ( SOL) has 24 elements 37: There is one group in the index @@ -71784,7 +71814,7 @@ 37: Total number of atoms in clusters = 24 37: cmid: 1, cmax: 6, max_size: 6 37: 16% 33% 50% 66% 83%100%cmid: 6, cmax: 18, max_size: 6 -37: 16% 33% 50% 66% 83%100%[ OK ] ClustsizeTest.NoMolShortCutoff (6 ms) +37: 16% 33% 50% 66% 83%100%[ OK ] ClustsizeTest.NoMolShortCutoff (2 ms) 37: [ RUN ] ClustsizeTest.MolDefaultCutoff 37: Reading frames from pdb file Reading frame 0 time 0.000 Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) 37: Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) @@ -71793,7 +71823,7 @@ 37: Total number of atoms in clusters = 8 37: cmid: 2, cmax: 4, max_size: 2 37: 50%100%cmid: 2, cmax: 6, max_size: 2 -37: 50%100%[ OK ] ClustsizeTest.MolDefaultCutoff (1 ms) +37: 50%100%[ OK ] ClustsizeTest.MolDefaultCutoff (2 ms) 37: [ RUN ] ClustsizeTest.MolShortCutoff 37: Reading frames from pdb file Reading frame 0 time 0.000 Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) 37: Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) @@ -71811,12 +71841,12 @@ 37: Total number of atoms in clusters = 8 37: cmid: 2, cmax: 4, max_size: 2 37: 50%100%cmid: 2, cmax: 6, max_size: 2 -37: 50%100%[ OK ] ClustsizeTest.MolCSize (6 ms) -37: [----------] 5 tests from ClustsizeTest (16 ms total) +37: 50%100%[ OK ] ClustsizeTest.MolCSize (2 ms) +37: [----------] 5 tests from ClustsizeTest (9 ms total) 37: 37: [----------] 4 tests from TrajectoryAnalysisCommandLineRunnerTest 37: [ RUN ] TrajectoryAnalysisCommandLineRunnerTest.WritesHelp -37: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.WritesHelp (0 ms) +37: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.WritesHelp (1 ms) 37: [ RUN ] TrajectoryAnalysisCommandLineRunnerTest.RunsWithSubsetTrajectory 37: Reading frames from gro file 'Test system', 8 atoms. 37: Reading frame 0 time 0.000 @@ -71835,7 +71865,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.RunsWithSubsetTrajectory (8 ms) +37: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.RunsWithSubsetTrajectory (3 ms) 37: [ RUN ] TrajectoryAnalysisCommandLineRunnerTest.DetectsIncorrectTrajectorySubset 37: Reading frames from gro file 'Test system', 8 atoms. 37: Reading frame 0 time 0.000 @@ -71852,10 +71882,10 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.DetectsIncorrectTrajectorySubset (7 ms) +37: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.DetectsIncorrectTrajectorySubset (3 ms) 37: [ RUN ] TrajectoryAnalysisCommandLineRunnerTest.FailsWithTrajectorySubsetWithoutTrajectory -37: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.FailsWithTrajectorySubsetWithoutTrajectory (0 ms) -37: [----------] 4 tests from TrajectoryAnalysisCommandLineRunnerTest (15 ms total) +37: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.FailsWithTrajectorySubsetWithoutTrajectory (1 ms) +37: [----------] 4 tests from TrajectoryAnalysisCommandLineRunnerTest (8 ms total) 37: 37: [----------] 11 tests from AngleModuleTest 37: [ RUN ] AngleModuleTest.ComputesSimpleAngles @@ -71874,7 +71904,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] AngleModuleTest.ComputesSimpleAngles (8 ms) +37: [ OK ] AngleModuleTest.ComputesSimpleAngles (3 ms) 37: [ RUN ] AngleModuleTest.ComputesDihedrals 37: 37: WARNING: If there are molecules in the input trajectory file @@ -71908,7 +71938,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] AngleModuleTest.ComputesVectorPairAngles (7 ms) +37: [ OK ] AngleModuleTest.ComputesVectorPairAngles (4 ms) 37: [ RUN ] AngleModuleTest.ComputesVectorPlanePairAngles 37: 37: WARNING: If there are molecules in the input trajectory file @@ -71925,7 +71955,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] AngleModuleTest.ComputesVectorPlanePairAngles (7 ms) +37: [ OK ] AngleModuleTest.ComputesVectorPlanePairAngles (3 ms) 37: [ RUN ] AngleModuleTest.ComputesPlaneZAxisAngles 37: 37: WARNING: If there are molecules in the input trajectory file @@ -72029,7 +72059,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] AngleModuleTest.HandlesOneVsMultipleVectorAngles (3 ms) +37: [ OK ] AngleModuleTest.HandlesOneVsMultipleVectorAngles (4 ms) 37: [ RUN ] AngleModuleTest.HandlesOneVsMultipleVectorGroupsAngles 37: 37: WARNING: If there are molecules in the input trajectory file @@ -72047,7 +72077,7 @@ 37: files if necessary. 37: 37: [ OK ] AngleModuleTest.HandlesOneVsMultipleVectorGroupsAngles (3 ms) -37: [----------] 11 tests from AngleModuleTest (48 ms total) +37: [----------] 11 tests from AngleModuleTest (37 ms total) 37: 37: [----------] 4 tests from ConvertTrjModuleTest 37: [ RUN ] ConvertTrjModuleTest.WritesNormalOutput @@ -72068,7 +72098,7 @@ 37: Reading frames from pdb file Reading frame 0 time 0.000 '', 24 atoms 37: Reading frame 1 time 0.000 Last frame 1 time 0.000 37: Analyzed 2 frames, last time 0.000 -37: [ OK ] ConvertTrjModuleTest.WorksWithAtomAdding (1 ms) +37: [ OK ] ConvertTrjModuleTest.WorksWithAtomAdding (2 ms) 37: [ RUN ] ConvertTrjModuleTest.WorksWithAtomsAndSelection 37: Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) 37: Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) @@ -72076,7 +72106,7 @@ 37: Reading frame 1 time 0.000 Last frame 1 time 0.000 37: Analyzed 2 frames, last time 0.000 37: [ OK ] ConvertTrjModuleTest.WorksWithAtomsAndSelection (1 ms) -37: [----------] 4 tests from ConvertTrjModuleTest (25 ms total) +37: [----------] 4 tests from ConvertTrjModuleTest (26 ms total) 37: 37: [----------] 3 tests from DistanceModuleTest 37: [ RUN ] DistanceModuleTest.ComputesDistances @@ -72145,8 +72175,8 @@ 37: Number of samples: 3 37: Average distance: 1.72076 nm 37: Standard deviation: 1.24839 nm -37: [ OK ] DistanceModuleTest.HandlesDynamicSelections (3 ms) -37: [----------] 3 tests from DistanceModuleTest (13 ms total) +37: [ OK ] DistanceModuleTest.HandlesDynamicSelections (5 ms) +37: [----------] 3 tests from DistanceModuleTest (14 ms total) 37: 37: [----------] 2 tests from ExtractClusterModuleTest 37: [ RUN ] ExtractClusterModuleTest.WorksWithAllAtoms @@ -72160,7 +72190,7 @@ 37: Analyzed 26 frames, last time 0.050 37: There are 8 clusters containing 26 structures, highest framenr is 25 37: [ OK ] ExtractClusterModuleTest.WorksWithAtomSubset (2 ms) -37: [----------] 2 tests from ExtractClusterModuleTest (4 ms total) +37: [----------] 2 tests from ExtractClusterModuleTest (5 ms total) 37: 37: [----------] 2 tests from FreeVolumeModuleTest 37: [ RUN ] FreeVolumeModuleTest.ComputesFreeVolume @@ -72224,7 +72254,7 @@ 37: Molecular volume Vm assuming homogeneity: 0.2027 +/- 0.0000 nm^3 37: Molecular van der Waals volume assuming homogeneity: 0.1256 +/- 0.0000 nm^3 37: Fractional free volume 0.194 +/- 0.000 -37: [ OK ] FreeVolumeModuleTest.ComputesFreeVolume (112 ms) +37: [ OK ] FreeVolumeModuleTest.ComputesFreeVolume (119 ms) 37: [ RUN ] FreeVolumeModuleTest.ComputesFreeVolumeSelection 37: Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/freevolume.tpr, VERSION 4.5.5 (single precision) 37: Reading file /build/reproducible-path/gromacs-2020.6/src/gromacs/trajectoryanalysis/tests/freevolume.tpr, VERSION 4.5.5 (single precision) @@ -72276,8 +72306,8 @@ 37: Molecular volume Vm assuming homogeneity: 0.2027 +/- 0.0000 nm^3 37: Molecular van der Waals volume assuming homogeneity: 0.1247 +/- 0.0000 nm^3 37: Fractional free volume 0.200 +/- 0.000 -37: [ OK ] FreeVolumeModuleTest.ComputesFreeVolumeSelection (114 ms) -37: [----------] 2 tests from FreeVolumeModuleTest (226 ms total) +37: [ OK ] FreeVolumeModuleTest.ComputesFreeVolumeSelection (102 ms) +37: [----------] 2 tests from FreeVolumeModuleTest (221 ms total) 37: 37: [----------] 9 tests from PairDistanceModuleTest 37: [ RUN ] PairDistanceModuleTest.ComputesAllDistances @@ -72296,7 +72326,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] PairDistanceModuleTest.ComputesAllDistances (3 ms) +37: [ OK ] PairDistanceModuleTest.ComputesAllDistances (2 ms) 37: [ RUN ] PairDistanceModuleTest.ComputesAllDistancesWithCutoff 37: 37: WARNING: If there are molecules in the input trajectory file @@ -72313,7 +72343,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] PairDistanceModuleTest.ComputesAllDistancesWithCutoff (4 ms) +37: [ OK ] PairDistanceModuleTest.ComputesAllDistancesWithCutoff (3 ms) 37: [ RUN ] PairDistanceModuleTest.ComputesMinDistanceWithCutoff 37: 37: WARNING: If there are molecules in the input trajectory file @@ -72347,7 +72377,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] PairDistanceModuleTest.ComputesMaxDistance (4 ms) +37: [ OK ] PairDistanceModuleTest.ComputesMaxDistance (2 ms) 37: [ RUN ] PairDistanceModuleTest.ComputesMaxDistanceWithCutoff 37: 37: WARNING: If there are molecules in the input trajectory file @@ -72381,7 +72411,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] PairDistanceModuleTest.ComputesGroupedMinDistanceWithCutoff (3 ms) +37: [ OK ] PairDistanceModuleTest.ComputesGroupedMinDistanceWithCutoff (2 ms) 37: [ RUN ] PairDistanceModuleTest.ComputesGroupedMaxDistanceWithCutoff 37: 37: WARNING: If there are molecules in the input trajectory file @@ -72398,7 +72428,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] PairDistanceModuleTest.ComputesGroupedMaxDistanceWithCutoff (4 ms) +37: [ OK ] PairDistanceModuleTest.ComputesGroupedMaxDistanceWithCutoff (2 ms) 37: [ RUN ] PairDistanceModuleTest.CoordinateSelectionIsNotOverwritten 37: 37: WARNING: If there are molecules in the input trajectory file @@ -72433,7 +72463,7 @@ 37: files if necessary. 37: 37: [ OK ] PairDistanceModuleTest.CoordinateSelectionIsNotOverwrittenWithExplicitGroup (3 ms) -37: [----------] 9 tests from PairDistanceModuleTest (29 ms total) +37: [----------] 9 tests from PairDistanceModuleTest (22 ms total) 37: 37: [----------] 5 tests from RdfModuleTest 37: [ RUN ] RdfModuleTest.BasicTest @@ -72452,12 +72482,12 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] RdfModuleTest.BasicTest (28 ms) +37: [ OK ] RdfModuleTest.BasicTest (21 ms) 37: [ RUN ] RdfModuleTest.SelectionsSolelyFromIndexFileWork 37: Reading frames from gro file '216H2O,WATJP01,SPC216,SPC-MODEL,300K,BOX(M)=1.86206NM,WFVG,MAR. 1984', 648 atoms. 37: Reading frame 0 time 0.000 Last frame 0 time 0.000 37: Analyzed 1 frames, last time 0.000 -37: [ OK ] RdfModuleTest.SelectionsSolelyFromIndexFileWork (18 ms) +37: [ OK ] RdfModuleTest.SelectionsSolelyFromIndexFileWork (14 ms) 37: [ RUN ] RdfModuleTest.SelectionsFromBothTopologyFileAndIndexFileWork 37: 37: WARNING: If there are molecules in the input trajectory file @@ -72474,7 +72504,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] RdfModuleTest.SelectionsFromBothTopologyFileAndIndexFileWork (29 ms) +37: [ OK ] RdfModuleTest.SelectionsFromBothTopologyFileAndIndexFileWork (24 ms) 37: [ RUN ] RdfModuleTest.CalculatesSurf 37: 37: WARNING: If there are molecules in the input trajectory file @@ -72491,7 +72521,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] RdfModuleTest.CalculatesSurf (17 ms) +37: [ OK ] RdfModuleTest.CalculatesSurf (13 ms) 37: [ RUN ] RdfModuleTest.CalculatesXY 37: 37: WARNING: If there are molecules in the input trajectory file @@ -72508,8 +72538,8 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] RdfModuleTest.CalculatesXY (32 ms) -37: [----------] 5 tests from RdfModuleTest (124 ms total) +37: [ OK ] RdfModuleTest.CalculatesXY (25 ms) +37: [----------] 5 tests from RdfModuleTest (97 ms total) 37: 37: [----------] 5 tests from SasaModuleTest 37: [ RUN ] SasaModuleTest.BasicTest @@ -72556,7 +72586,7 @@ 37: you providing a run input file. 37: 37: Analyzed topology coordinates -37: [ OK ] SasaModuleTest.BasicTest (15 ms) +37: [ OK ] SasaModuleTest.BasicTest (11 ms) 37: [ RUN ] SasaModuleTest.HandlesSelectedResidues 37: 37: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ @@ -72601,7 +72631,7 @@ 37: you providing a run input file. 37: 37: Analyzed topology coordinates -37: [ OK ] SasaModuleTest.HandlesSelectedResidues (9 ms) +37: [ OK ] SasaModuleTest.HandlesSelectedResidues (6 ms) 37: [ RUN ] SasaModuleTest.WritesConnollySurfaceWithSolute 37: 37: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ @@ -72646,7 +72676,7 @@ 37: you providing a run input file. 37: 37: Analyzed topology coordinates -37: [ OK ] SasaModuleTest.WritesConnollySurfaceWithSolute (9 ms) +37: [ OK ] SasaModuleTest.WritesConnollySurfaceWithSolute (6 ms) 37: [ RUN ] SasaModuleTest.HandlesDynamicOutputGroup 37: 37: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ @@ -72691,7 +72721,7 @@ 37: you providing a run input file. 37: 37: Analyzed topology coordinates -37: [ OK ] SasaModuleTest.HandlesDynamicOutputGroup (13 ms) +37: [ OK ] SasaModuleTest.HandlesDynamicOutputGroup (8 ms) 37: [ RUN ] SasaModuleTest.HandlesDynamicCalculationGroup 37: 37: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ @@ -72736,8 +72766,8 @@ 37: you providing a run input file. 37: 37: Analyzed topology coordinates -37: [ OK ] SasaModuleTest.HandlesDynamicCalculationGroup (11 ms) -37: [----------] 5 tests from SasaModuleTest (58 ms total) +37: [ OK ] SasaModuleTest.HandlesDynamicCalculationGroup (7 ms) +37: [----------] 5 tests from SasaModuleTest (40 ms total) 37: 37: [----------] 8 tests from SelectModuleTest 37: [ RUN ] SelectModuleTest.BasicTest @@ -72758,7 +72788,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] SelectModuleTest.BasicTest (5 ms) +37: [ OK ] SelectModuleTest.BasicTest (4 ms) 37: [ RUN ] SelectModuleTest.HandlesPDBOutputWithNonPDBInput 37: Reading frames from gro file 'Test system', 15 atoms. 37: Reading frame 0 time 0.000 @@ -72777,7 +72807,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] SelectModuleTest.HandlesPDBOutputWithNonPDBInput (5 ms) +37: [ OK ] SelectModuleTest.HandlesPDBOutputWithNonPDBInput (4 ms) 37: [ RUN ] SelectModuleTest.HandlesPDBOutputWithPDBInput 37: Reading frames from gro file 'Test system', 15 atoms. 37: Reading frame 0 time 0.000 @@ -72796,7 +72826,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] SelectModuleTest.HandlesPDBOutputWithPDBInput (5 ms) +37: [ OK ] SelectModuleTest.HandlesPDBOutputWithPDBInput (3 ms) 37: [ RUN ] SelectModuleTest.HandlesMaxPDBOutput 37: Reading frames from gro file 'Test system', 15 atoms. 37: Reading frame 0 time 0.000 @@ -72815,7 +72845,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] SelectModuleTest.HandlesMaxPDBOutput (5 ms) +37: [ OK ] SelectModuleTest.HandlesMaxPDBOutput (3 ms) 37: [ RUN ] SelectModuleTest.HandlesSelectedPDBOutput 37: Reading frames from gro file 'Test system', 15 atoms. 37: Reading frame 0 time 0.000 @@ -72834,7 +72864,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] SelectModuleTest.HandlesSelectedPDBOutput (5 ms) +37: [ OK ] SelectModuleTest.HandlesSelectedPDBOutput (3 ms) 37: [ RUN ] SelectModuleTest.NormalizesSizes 37: 37: WARNING: If there are molecules in the input trajectory file @@ -72851,7 +72881,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] SelectModuleTest.NormalizesSizes (3 ms) +37: [ OK ] SelectModuleTest.NormalizesSizes (2 ms) 37: [ RUN ] SelectModuleTest.WritesResidueNumbers 37: 37: WARNING: If there are molecules in the input trajectory file @@ -72868,7 +72898,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] SelectModuleTest.WritesResidueNumbers (3 ms) +37: [ OK ] SelectModuleTest.WritesResidueNumbers (2 ms) 37: [ RUN ] SelectModuleTest.WritesResidueIndices 37: 37: WARNING: If there are molecules in the input trajectory file @@ -72885,14 +72915,14 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] SelectModuleTest.WritesResidueIndices (4 ms) -37: [----------] 8 tests from SelectModuleTest (35 ms total) +37: [ OK ] SelectModuleTest.WritesResidueIndices (2 ms) +37: [----------] 8 tests from SelectModuleTest (24 ms total) 37: 37: [----------] 10 tests from SurfaceAreaTest 37: [ RUN ] SurfaceAreaTest.ComputesSinglePoint -37: [ OK ] SurfaceAreaTest.ComputesSinglePoint (0 ms) +37: [ OK ] SurfaceAreaTest.ComputesSinglePoint (1 ms) 37: [ RUN ] SurfaceAreaTest.ComputesTwoPoints -37: [ OK ] SurfaceAreaTest.ComputesTwoPoints (1 ms) +37: [ OK ] SurfaceAreaTest.ComputesTwoPoints (0 ms) 37: [ RUN ] SurfaceAreaTest.ComputesTwoPointsOfUnequalRadius 37: [ OK ] SurfaceAreaTest.ComputesTwoPointsOfUnequalRadius (1 ms) 37: [ RUN ] SurfaceAreaTest.SurfacePoints12 @@ -72902,14 +72932,14 @@ 37: [ RUN ] SurfaceAreaTest.SurfacePoints42 37: [ OK ] SurfaceAreaTest.SurfacePoints42 (0 ms) 37: [ RUN ] SurfaceAreaTest.SurfacePoints122 -37: [ OK ] SurfaceAreaTest.SurfacePoints122 (2 ms) +37: [ OK ] SurfaceAreaTest.SurfacePoints122 (1 ms) 37: [ RUN ] SurfaceAreaTest.Computes100Points 37: [ OK ] SurfaceAreaTest.Computes100Points (1 ms) 37: [ RUN ] SurfaceAreaTest.Computes100PointsWithRectangularPBC 37: [ OK ] SurfaceAreaTest.Computes100PointsWithRectangularPBC (2 ms) 37: [ RUN ] SurfaceAreaTest.Computes100PointsWithTriclinicPBC -37: [ OK ] SurfaceAreaTest.Computes100PointsWithTriclinicPBC (4 ms) -37: [----------] 10 tests from SurfaceAreaTest (12 ms total) +37: [ OK ] SurfaceAreaTest.Computes100PointsWithTriclinicPBC (2 ms) +37: [----------] 10 tests from SurfaceAreaTest (10 ms total) 37: 37: [----------] 4 tests from TopologyInformation 37: [ RUN ] TopologyInformation.CantWorkWithoutReadingAFile @@ -72923,7 +72953,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] TopologyInformation.WorksWithGroFile (5 ms) +37: [ OK ] TopologyInformation.WorksWithGroFile (3 ms) 37: [ RUN ] TopologyInformation.WorksWithPdbFile 37: 37: WARNING: Masses and atomic (Van der Waals) radii will be guessed @@ -72940,7 +72970,7 @@ 37: For a correct single-point energy evaluation with nsteps = 0, use 37: continuation = yes to avoid constraining the input coordinates. 37: -37: Setting the LD random seed to -1073759265 +37: Setting the LD random seed to -1228417667 37: Generated 330891 of the 330891 non-bonded parameter combinations 37: Generating 1-4 interactions: fudge = 0.5 37: Generated 330891 of the 330891 1-4 parameter combinations @@ -72974,8 +73004,8 @@ 37: There are: 10 Protein residues 37: Analysing Protein... 37: This run will generate roughly 0 Mb of data -37: [ OK ] TopologyInformation.WorksWithTprFromPdbFile (669 ms) -37: [----------] 4 tests from TopologyInformation (678 ms total) +37: [ OK ] TopologyInformation.WorksWithTprFromPdbFile (622 ms) +37: [----------] 4 tests from TopologyInformation (629 ms total) 37: 37: [----------] 4 tests from TrajectoryModuleTest 37: [ RUN ] TrajectoryModuleTest.BasicTest @@ -72996,7 +73026,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] TrajectoryModuleTest.BasicTest (4 ms) +37: [ OK ] TrajectoryModuleTest.BasicTest (3 ms) 37: [ RUN ] TrajectoryModuleTest.PlotsXOnly 37: Reading frames from gro file 'Test system', 15 atoms. 37: Reading frame 0 time 0.000 @@ -73015,7 +73045,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] TrajectoryModuleTest.PlotsXOnly (4 ms) +37: [ OK ] TrajectoryModuleTest.PlotsXOnly (3 ms) 37: [ RUN ] TrajectoryModuleTest.HandlesNoVelocities 37: Reading frames from gro file 'Test system', 15 atoms. 37: Reading frame 0 time 0.000 @@ -73034,7 +73064,7 @@ 37: and radius of the atom type. Please check the output 37: files if necessary. 37: -37: [ OK ] TrajectoryModuleTest.HandlesNoVelocities (3 ms) +37: [ OK ] TrajectoryModuleTest.HandlesNoVelocities (2 ms) 37: [ RUN ] TrajectoryModuleTest.HandlesNoForces 37: Reading frames from gro file 'Test system', 15 atoms. 37: Reading frame 0 time 0.000 @@ -73054,7 +73084,7 @@ 37: files if necessary. 37: 37: [ OK ] TrajectoryModuleTest.HandlesNoForces (3 ms) -37: [----------] 4 tests from TrajectoryModuleTest (14 ms total) +37: [----------] 4 tests from TrajectoryModuleTest (11 ms total) 37: 37: [----------] 5 tests from UnionFinderTest 37: [ RUN ] UnionFinderTest.WorksEmpty @@ -73075,9 +73105,9 @@ 37: [----------] 1 test from MappedUnionFinderTest (0 ms total) 37: 37: [----------] Global test environment tear-down -37: [==========] 82 tests from 16 test cases ran. (1298 ms total) +37: [==========] 82 tests from 16 test cases ran. (1153 ms total) 37: [ PASSED ] 82 tests. -37/54 Test #37: TrajectoryAnalysisUnitTests ......... Passed 1.34 sec +37/54 Test #37: TrajectoryAnalysisUnitTests ......... Passed 1.17 sec test 38 Start 38: EnergyAnalysisUnitTests @@ -73094,8 +73124,8 @@ 38: 38: 38: Wrote 8 lambda values with 101 samples as 808 dH data blocks to /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/energyanalysis/tests/Testing/Temporary/DhdlTest_ExtractDhdl_dhdl.xvg -38: [ OK ] DhdlTest.ExtractDhdl (18 ms) -38: [----------] 1 test from DhdlTest (18 ms total) +38: [ OK ] DhdlTest.ExtractDhdl (7 ms) +38: [----------] 1 test from DhdlTest (7 ms total) 38: 38: [----------] 1 test from OriresTest 38: [ RUN ] OriresTest.ExtractOrires @@ -73106,8 +73136,8 @@ 38: End your selection with 0 38: Selecting all 7 orientation restraints 38: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.002 Reading energy frame 2 time 0.004 Reading energy frame 3 time 0.006 Reading energy frame 4 time 0.008 Reading energy frame 5 time 0.010 Reading energy frame 6 time 0.012 Reading energy frame 7 time 0.014 Reading energy frame 8 time 0.016 Reading energy frame 9 time 0.018 Reading energy frame 10 time 0.020 Last energy frame read 10 time 0.020 -38: [ OK ] OriresTest.ExtractOrires (28 ms) -38: [----------] 1 test from OriresTest (28 ms total) +38: [ OK ] OriresTest.ExtractOrires (9 ms) +38: [----------] 1 test from OriresTest (9 ms total) 38: 38: [----------] 3 tests from EnergyTest 38: [ RUN ] EnergyTest.ExtractEnergy @@ -73197,8 +73227,8 @@ 38: Pressure 5.34371 4.1 605.307 -4.88771 (bar) 38: Box-Z 2.92457 0.0054 0.0151558 0.0234974 (nm) 38: Volume 25.0162 0.14 0.386769 0.598615 (nm^3) -38: [ OK ] EnergyTest.ExtractEnergyMixed (11 ms) -38: [----------] 3 tests from EnergyTest (16 ms total) +38: [ OK ] EnergyTest.ExtractEnergyMixed (3 ms) +38: [----------] 3 tests from EnergyTest (7 ms total) 38: 38: [----------] 2 tests from ViscosityTest 38: [ RUN ] ViscosityTest.EinsteinViscosity @@ -73222,7 +73252,7 @@ 38: Temperature 300.001 0.02 5.8425 -0.0130558 (K) 38: Volume 25.0162 0.14 0.386769 0.598615 (nm^3) 38: Pressure 5.34371 4.1 605.307 -4.88771 (bar) -38: [ OK ] ViscosityTest.EinsteinViscosity (278 ms) +38: [ OK ] ViscosityTest.EinsteinViscosity (109 ms) 38: [ RUN ] ViscosityTest.EinsteinViscosityIntegral 38: Opened /build/reproducible-path/gromacs-2020.6/src/gromacs/energyanalysis/tests/ener.edr as single precision energy file 38: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.200 Reading energy frame 2 time 0.400 Reading energy frame 3 time 0.600 Reading energy frame 4 time 0.800 Reading energy frame 5 time 1.000 Reading energy frame 6 time 1.200 Reading energy frame 7 time 1.400 Reading energy frame 8 time 1.600 Reading energy frame 9 time 1.800 Reading energy frame 10 time 2.000 Reading energy frame 11 time 2.200 Reading energy frame 12 time 2.400 Reading energy frame 13 time 2.600 Reading energy frame 14 time 2.800 Reading energy frame 15 time 3.000 Reading energy frame 16 time 3.200 Reading energy frame 17 time 3.400 Reading energy frame 18 time 3.600 Reading energy frame 19 time 3.800 Reading energy frame 20 time 4.000 Reading energy frame 30 time 6.000 Reading energy frame 40 time 8.000 Reading energy frame 50 time 10.000 Last energy frame read 50 time 10.000 @@ -73244,13 +73274,13 @@ 38: Temperature 300.001 0.02 5.8425 -0.0130558 (K) 38: Volume 25.0162 0.14 0.386769 0.598615 (nm^3) 38: Pressure 5.34371 4.1 605.307 -4.88771 (bar) -38: [ OK ] ViscosityTest.EinsteinViscosityIntegral (260 ms) -38: [----------] 2 tests from ViscosityTest (538 ms total) +38: [ OK ] ViscosityTest.EinsteinViscosityIntegral (106 ms) +38: [----------] 2 tests from ViscosityTest (215 ms total) 38: 38: [----------] Global test environment tear-down -38: [==========] 7 tests from 4 test cases ran. (600 ms total) +38: [==========] 7 tests from 4 test cases ran. (238 ms total) 38: [ PASSED ] 7 tests. -38/54 Test #38: EnergyAnalysisUnitTests ............. Passed 0.65 sec +38/54 Test #38: EnergyAnalysisUnitTests ............. Passed 0.25 sec test 39 Start 39: ToolUnitTests @@ -73264,7 +73294,7 @@ 39: For a correct single-point energy evaluation with nsteps = 0, use 39: continuation = yes to avoid constraining the input coordinates. 39: -39: Setting the LD random seed to -538017953 +39: Setting the LD random seed to -293749763 39: Generated 330891 of the 330891 non-bonded parameter combinations 39: Generating 1-4 interactions: fudge = 0.5 39: Generated 330891 of the 330891 1-4 parameter combinations @@ -73310,7 +73340,7 @@ 39: comm-mode = Linear 39: nstcomm = 100 39: bd-fric = 0 -39: ld-seed = -538017953 +39: ld-seed = -293749763 39: emtol = 10 39: emstep = 0.01 39: niter = 20 @@ -76227,12 +76257,12 @@ 39: Compressed X: 156 (total 156 atoms) 39: Or. Res. Fit: 156 (total 156 atoms) 39: QMMM : 156 (total 156 atoms) -39: [ OK ] DumpTest.WorksWithTpr (10 ms) +39: [ OK ] DumpTest.WorksWithTpr (15 ms) 39: [ RUN ] DumpTest.WorksWithTprAndMdpWriting 39: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tools/tests/Testing/Temporary/DumpTest_lysozyme.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 39: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/tools/tests/Testing/Temporary/DumpTest_lysozyme.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 39: [ OK ] DumpTest.WorksWithTprAndMdpWriting (1 ms) -39: [----------] 2 tests from DumpTest (11 ms total) +39: [----------] 2 tests from DumpTest (16 ms total) 39: 39: [----------] 4 tests from ReportMethodsTest 39: @@ -76240,7 +76270,7 @@ 39: For a correct single-point energy evaluation with nsteps = 0, use 39: continuation = yes to avoid constraining the input coordinates. 39: -39: Setting the LD random seed to 1274982167 +39: Setting the LD random seed to 854522863 39: Generated 330891 of the 330891 non-bonded parameter combinations 39: Generating 1-4 interactions: fudge = 0.5 39: Generated 330891 of the 330891 1-4 parameter combinations @@ -76306,7 +76336,7 @@ 39: Note that major changes are planned in future for trjconv, to improve usability and utility. 39: Select group for output 39: Selected 2: 'SecondWaterMolecule' -39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/0 (13 ms) +39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/0 (4 ms) 39: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/1 39: Will write tng: Trajectory file (tng format) 39: Group 0 ( System) has 6 elements @@ -76319,7 +76349,7 @@ 39: Note that major changes are planned in future for trjconv, to improve usability and utility. 39: Select group for output 39: Selected 2: 'SecondWaterMolecule' -39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/1 (6 ms) +39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/1 (2 ms) 39: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/2 39: Will write tng: Trajectory file (tng format) 39: Group 0 ( System) has 6 elements @@ -76330,7 +76360,7 @@ 39: Note that major changes are planned in future for trjconv, to improve usability and utility. 39: Select group for output 39: Selected 2: 'SecondWaterMolecule' -39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/2 (8 ms) +39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/2 (2 ms) 39: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/3 39: Will write tng: Trajectory file (tng format) 39: Group 0 ( System) has 6 elements @@ -76344,7 +76374,7 @@ 39: Note that major changes are planned in future for trjconv, to improve usability and utility. 39: Select group for output 39: Selected 2: 'SecondWaterMolecule' -39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/3 (6 ms) +39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/3 (2 ms) 39: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/4 39: Will write tng: Trajectory file (tng format) 39: Group 0 ( System) has 6 elements @@ -76358,7 +76388,7 @@ 39: Note that major changes are planned in future for trjconv, to improve usability and utility. 39: Select group for output 39: Selected 2: 'SecondWaterMolecule' -39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/4 (3 ms) +39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/4 (2 ms) 39: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/5 39: Will write tng: Trajectory file (tng format) 39: Group 0 ( System) has 6 elements @@ -76369,8 +76399,8 @@ 39: Note that major changes are planned in future for trjconv, to improve usability and utility. 39: Select group for output 39: Selected 2: 'SecondWaterMolecule' -39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/5 (6 ms) -39: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset (42 ms total) +39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/5 (2 ms) +39: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset (14 ms total) 39: 39: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile 39: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/0 @@ -76407,7 +76437,7 @@ 39: Note that major changes are planned in future for trjconv, to improve usability and utility. 39: Select group for output 39: Selected 2: 'SecondWaterMolecule' -39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/2 (0 ms) +39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/2 (1 ms) 39: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/3 39: Will write trr: Trajectory in portable xdr format 39: Group 0 ( System) has 6 elements @@ -76421,7 +76451,7 @@ 39: Note that major changes are planned in future for trjconv, to improve usability and utility. 39: Select group for output 39: Selected 2: 'SecondWaterMolecule' -39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/3 (1 ms) +39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/3 (0 ms) 39: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/4 39: Will write trr: Trajectory in portable xdr format 39: Group 0 ( System) has 6 elements @@ -76446,13 +76476,13 @@ 39: Note that major changes are planned in future for trjconv, to improve usability and utility. 39: Select group for output 39: Selected 2: 'SecondWaterMolecule' -39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/5 (4 ms) -39: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile (7 ms total) +39: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/5 (0 ms) +39: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile (3 ms total) 39: 39: [----------] Global test environment tear-down -39: [==========] 18 tests from 4 test cases ran. (1892 ms total) +39: [==========] 18 tests from 4 test cases ran. (1596 ms total) 39: [ PASSED ] 18 tests. -39/54 Test #39: ToolUnitTests ....................... Passed 1.93 sec +39/54 Test #39: ToolUnitTests ....................... Passed 1.61 sec test 40 Start 40: FileIOTests @@ -76478,14 +76508,14 @@ 40: 40: [----------] 4 tests from MrcDensityMap 40: [ RUN ] MrcDensityMap.RoundTripIsIdempotent -40: [ OK ] MrcDensityMap.RoundTripIsIdempotent (5 ms) +40: [ OK ] MrcDensityMap.RoundTripIsIdempotent (0 ms) 40: [ RUN ] MrcDensityMap.ThrowsFileIOErrorWhenFileNotPresent -40: [ OK ] MrcDensityMap.ThrowsFileIOErrorWhenFileNotPresent (0 ms) +40: [ OK ] MrcDensityMap.ThrowsFileIOErrorWhenFileNotPresent (1 ms) 40: [ RUN ] MrcDensityMap.ReadsCoordinateTransformationFromFile 40: [ OK ] MrcDensityMap.ReadsCoordinateTransformationFromFile (0 ms) 40: [ RUN ] MrcDensityMap.ReadsDensityDataFromFile -40: [ OK ] MrcDensityMap.ReadsDensityDataFromFile (2 ms) -40: [----------] 4 tests from MrcDensityMap (7 ms total) +40: [ OK ] MrcDensityMap.ReadsDensityDataFromFile (1 ms) +40: [----------] 4 tests from MrcDensityMap (2 ms total) 40: 40: [----------] 8 tests from MrcDensityMapHeaderTest 40: [ RUN ] MrcDensityMapHeaderTest.DataSizeIsZeroForDefaultHeader @@ -76559,33 +76589,33 @@ 40: 40: [----------] 1 test from FileIOXdrSerializerTest 40: [ RUN ] FileIOXdrSerializerTest.SizeIsCorrect -40: [ OK ] FileIOXdrSerializerTest.SizeIsCorrect (1 ms) -40: [----------] 1 test from FileIOXdrSerializerTest (1 ms total) +40: [ OK ] FileIOXdrSerializerTest.SizeIsCorrect (0 ms) +40: [----------] 1 test from FileIOXdrSerializerTest (0 ms total) 40: 40: [----------] 2 tests from TngTest 40: [ RUN ] TngTest.CanOpenTngFile 40: TNG library: Cannot open file spc2-traj.tng. /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/lib/tng_io.c: 890 40: TNG library: Cannot open file spc2-traj.tng. /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/lib/tng_io.c: 890 -40: [ OK ] TngTest.CanOpenTngFile (0 ms) +40: [ OK ] TngTest.CanOpenTngFile (1 ms) 40: [ RUN ] TngTest.CloseBeforeOpenIsNotFatal 40: [ OK ] TngTest.CloseBeforeOpenIsNotFatal (0 ms) -40: [----------] 2 tests from TngTest (0 ms total) +40: [----------] 2 tests from TngTest (1 ms total) 40: 40: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest 40: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 40: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 (0 ms) 40: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 -40: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 (5 ms) +40: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 (1 ms) 40: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 40: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 (1 ms) 40: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 40: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 (0 ms) -40: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest (6 ms total) +40: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest (2 ms total) 40: 40: [----------] Global test environment tear-down -40: [==========] 33 tests from 8 test cases ran. (16 ms total) +40: [==========] 33 tests from 8 test cases ran. (8 ms total) 40: [ PASSED ] 33 tests. -40/54 Test #40: FileIOTests ......................... Passed 0.06 sec +40/54 Test #40: FileIOTests ......................... Passed 0.02 sec test 41 Start 41: SelectionUnitTests @@ -76612,11 +76642,11 @@ 41: [ RUN ] IndexBlockTest.CreatesMoleculeBlocksForComplexTopology 41: [ OK ] IndexBlockTest.CreatesMoleculeBlocksForComplexTopology (0 ms) 41: [ RUN ] IndexBlockTest.CreatesSingleBlock -41: [ OK ] IndexBlockTest.CreatesSingleBlock (4 ms) +41: [ OK ] IndexBlockTest.CreatesSingleBlock (0 ms) 41: [ RUN ] IndexBlockTest.ChecksGroupForFullBlocksPositive 41: [ OK ] IndexBlockTest.ChecksGroupForFullBlocksPositive (0 ms) 41: [ RUN ] IndexBlockTest.ChecksOutOfOrderGroupForFullBlocksPositive -41: [ OK ] IndexBlockTest.ChecksOutOfOrderGroupForFullBlocksPositive (1 ms) +41: [ OK ] IndexBlockTest.ChecksOutOfOrderGroupForFullBlocksPositive (0 ms) 41: [ RUN ] IndexBlockTest.ChecksGroupForFullBlocksNegative 41: [ OK ] IndexBlockTest.ChecksGroupForFullBlocksNegative (0 ms) 41: [ RUN ] IndexBlockTest.ChecksGroupForCompleteElementsTrivial @@ -76629,11 +76659,11 @@ 41: [ OK ] IndexBlockTest.ChecksGroupForCompleteMoleculesPositive (0 ms) 41: [ RUN ] IndexBlockTest.ChecksGroupForCompleteMoleculesNegative 41: [ OK ] IndexBlockTest.ChecksGroupForCompleteMoleculesNegative (0 ms) -41: [----------] 15 tests from IndexBlockTest (6 ms total) +41: [----------] 15 tests from IndexBlockTest (1 ms total) 41: 41: [----------] 11 tests from IndexMapTest 41: [ RUN ] IndexMapTest.InitializesAtomBlock -41: [ OK ] IndexMapTest.InitializesAtomBlock (0 ms) +41: [ OK ] IndexMapTest.InitializesAtomBlock (1 ms) 41: [ RUN ] IndexMapTest.InitializesOrgIdGroupAtom 41: [ OK ] IndexMapTest.InitializesOrgIdGroupAtom (0 ms) 41: [ RUN ] IndexMapTest.InitializesOrgIdGroupSingle @@ -76643,7 +76673,7 @@ 41: [ RUN ] IndexMapTest.InitializesOrgIdGroupMolecule 41: [ OK ] IndexMapTest.InitializesOrgIdGroupMolecule (0 ms) 41: [ RUN ] IndexMapTest.InitializesOrgIdGroupAll -41: [ OK ] IndexMapTest.InitializesOrgIdGroupAll (1 ms) +41: [ OK ] IndexMapTest.InitializesOrgIdGroupAll (0 ms) 41: [ RUN ] IndexMapTest.InitializesMoleculeBlock 41: [ OK ] IndexMapTest.InitializesMoleculeBlock (0 ms) 41: [ RUN ] IndexMapTest.MapsSingleBlock @@ -76653,8 +76683,8 @@ 41: [ RUN ] IndexMapTest.MapsResidueBlocksWithMask 41: [ OK ] IndexMapTest.MapsResidueBlocksWithMask (0 ms) 41: [ RUN ] IndexMapTest.HandlesMultipleRequests -41: [ OK ] IndexMapTest.HandlesMultipleRequests (0 ms) -41: [----------] 11 tests from IndexMapTest (2 ms total) +41: [ OK ] IndexMapTest.HandlesMultipleRequests (1 ms) +41: [----------] 11 tests from IndexMapTest (3 ms total) 41: 41: [----------] 3 tests from IndexGroupsAndNamesTest 41: [ RUN ] IndexGroupsAndNamesTest.containsNames @@ -76662,28 +76692,28 @@ 41: [ RUN ] IndexGroupsAndNamesTest.throwsWhenNameMissing 41: [ OK ] IndexGroupsAndNamesTest.throwsWhenNameMissing (0 ms) 41: [ RUN ] IndexGroupsAndNamesTest.groupIndicesCorrect -41: [ OK ] IndexGroupsAndNamesTest.groupIndicesCorrect (1 ms) -41: [----------] 3 tests from IndexGroupsAndNamesTest (1 ms total) +41: [ OK ] IndexGroupsAndNamesTest.groupIndicesCorrect (0 ms) +41: [----------] 3 tests from IndexGroupsAndNamesTest (0 ms total) 41: 41: [----------] 15 tests from NeighborhoodSearchTest 41: [ RUN ] NeighborhoodSearchTest.SimpleSearch -41: [ OK ] NeighborhoodSearchTest.SimpleSearch (37 ms) +41: [ OK ] NeighborhoodSearchTest.SimpleSearch (15 ms) 41: [ RUN ] NeighborhoodSearchTest.SimpleSearchXY -41: [ OK ] NeighborhoodSearchTest.SimpleSearchXY (34 ms) +41: [ OK ] NeighborhoodSearchTest.SimpleSearchXY (17 ms) 41: [ RUN ] NeighborhoodSearchTest.GridSearchBox -41: [ OK ] NeighborhoodSearchTest.GridSearchBox (7 ms) +41: [ OK ] NeighborhoodSearchTest.GridSearchBox (2 ms) 41: [ RUN ] NeighborhoodSearchTest.GridSearchTriclinic -41: [ OK ] NeighborhoodSearchTest.GridSearchTriclinic (22 ms) +41: [ OK ] NeighborhoodSearchTest.GridSearchTriclinic (9 ms) 41: [ RUN ] NeighborhoodSearchTest.GridSearch2DPBC -41: [ OK ] NeighborhoodSearchTest.GridSearch2DPBC (8 ms) +41: [ OK ] NeighborhoodSearchTest.GridSearch2DPBC (5 ms) 41: [ RUN ] NeighborhoodSearchTest.GridSearchNoPBC 41: [ OK ] NeighborhoodSearchTest.GridSearchNoPBC (2 ms) 41: [ RUN ] NeighborhoodSearchTest.GridSearchXYBox -41: [ OK ] NeighborhoodSearchTest.GridSearchXYBox (8 ms) +41: [ OK ] NeighborhoodSearchTest.GridSearchXYBox (2 ms) 41: [ RUN ] NeighborhoodSearchTest.SimpleSelfPairsSearch 41: [ OK ] NeighborhoodSearchTest.SimpleSelfPairsSearch (0 ms) 41: [ RUN ] NeighborhoodSearchTest.GridSelfPairsSearch -41: [ OK ] NeighborhoodSearchTest.GridSelfPairsSearch (80 ms) +41: [ OK ] NeighborhoodSearchTest.GridSelfPairsSearch (44 ms) 41: [ RUN ] NeighborhoodSearchTest.HandlesConcurrentSearches 41: [ OK ] NeighborhoodSearchTest.HandlesConcurrentSearches (0 ms) 41: [ RUN ] NeighborhoodSearchTest.HandlesNoPBC @@ -76693,57 +76723,57 @@ 41: [ RUN ] NeighborhoodSearchTest.HandlesSkippingPairs 41: [ OK ] NeighborhoodSearchTest.HandlesSkippingPairs (0 ms) 41: [ RUN ] NeighborhoodSearchTest.SimpleSearchExclusions -41: [ OK ] NeighborhoodSearchTest.SimpleSearchExclusions (4 ms) +41: [ OK ] NeighborhoodSearchTest.SimpleSearchExclusions (3 ms) 41: [ RUN ] NeighborhoodSearchTest.GridSearchExclusions 41: [ OK ] NeighborhoodSearchTest.GridSearchExclusions (1 ms) -41: [----------] 15 tests from NeighborhoodSearchTest (204 ms total) +41: [----------] 15 tests from NeighborhoodSearchTest (100 ms total) 41: 41: [----------] 12 tests from PositionCalculationTest 41: [ RUN ] PositionCalculationTest.ComputesAtomPositions -41: [ OK ] PositionCalculationTest.ComputesAtomPositions (1 ms) +41: [ OK ] PositionCalculationTest.ComputesAtomPositions (0 ms) 41: [ RUN ] PositionCalculationTest.ComputesResidueCOGPositions 41: [ OK ] PositionCalculationTest.ComputesResidueCOGPositions (0 ms) 41: [ RUN ] PositionCalculationTest.ComputesResidueCOMPositions 41: [ OK ] PositionCalculationTest.ComputesResidueCOMPositions (0 ms) 41: [ RUN ] PositionCalculationTest.ComputesGroupCOGPositions -41: [ OK ] PositionCalculationTest.ComputesGroupCOGPositions (1 ms) +41: [ OK ] PositionCalculationTest.ComputesGroupCOGPositions (0 ms) 41: [ RUN ] PositionCalculationTest.ComputesGroupCOMPositions 41: [ OK ] PositionCalculationTest.ComputesGroupCOMPositions (0 ms) 41: [ RUN ] PositionCalculationTest.ComputesPositionsWithCompleteWhole -41: [ OK ] PositionCalculationTest.ComputesPositionsWithCompleteWhole (0 ms) +41: [ OK ] PositionCalculationTest.ComputesPositionsWithCompleteWhole (1 ms) 41: [ RUN ] PositionCalculationTest.ComputesPositionsWithCompleteMax 41: [ OK ] PositionCalculationTest.ComputesPositionsWithCompleteMax (0 ms) 41: [ RUN ] PositionCalculationTest.ComputesPositionMask 41: [ OK ] PositionCalculationTest.ComputesPositionMask (0 ms) 41: [ RUN ] PositionCalculationTest.HandlesFramesWithLessAtoms -41: [ OK ] PositionCalculationTest.HandlesFramesWithLessAtoms (1 ms) +41: [ OK ] PositionCalculationTest.HandlesFramesWithLessAtoms (0 ms) 41: [ RUN ] PositionCalculationTest.HandlesFramesWithLessAtoms2 41: [ OK ] PositionCalculationTest.HandlesFramesWithLessAtoms2 (0 ms) 41: [ RUN ] PositionCalculationTest.HandlesIdenticalStaticCalculations -41: [ OK ] PositionCalculationTest.HandlesIdenticalStaticCalculations (0 ms) +41: [ OK ] PositionCalculationTest.HandlesIdenticalStaticCalculations (1 ms) 41: [ RUN ] PositionCalculationTest.HandlesOverlappingStaticCalculations 41: [ OK ] PositionCalculationTest.HandlesOverlappingStaticCalculations (0 ms) -41: [----------] 12 tests from PositionCalculationTest (4 ms total) +41: [----------] 12 tests from PositionCalculationTest (3 ms total) 41: 41: [----------] 29 tests from SelectionCollectionTest 41: [ RUN ] SelectionCollectionTest.HandlesNoSelections 41: [ OK ] SelectionCollectionTest.HandlesNoSelections (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesNoSelectionsWithDefaultPositionType -41: [ OK ] SelectionCollectionTest.HandlesNoSelectionsWithDefaultPositionType (4 ms) +41: [ OK ] SelectionCollectionTest.HandlesNoSelectionsWithDefaultPositionType (1 ms) 41: [ RUN ] SelectionCollectionTest.HandlesVelocityAndForceRequests 41: [ OK ] SelectionCollectionTest.HandlesVelocityAndForceRequests (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesForceRequestForCenterOfGeometry -41: [ OK ] SelectionCollectionTest.HandlesForceRequestForCenterOfGeometry (1 ms) +41: [ OK ] SelectionCollectionTest.HandlesForceRequestForCenterOfGeometry (0 ms) 41: [ RUN ] SelectionCollectionTest.ParsesSelectionsFromFile -41: [ OK ] SelectionCollectionTest.ParsesSelectionsFromFile (0 ms) +41: [ OK ] SelectionCollectionTest.ParsesSelectionsFromFile (1 ms) 41: [ RUN ] SelectionCollectionTest.HandlesAtypicalWhitespace 41: [ OK ] SelectionCollectionTest.HandlesAtypicalWhitespace (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesInvalidRegularExpressions -41: [ OK ] SelectionCollectionTest.HandlesInvalidRegularExpressions (1 ms) +41: [ OK ] SelectionCollectionTest.HandlesInvalidRegularExpressions (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesMissingMethodParamValue -41: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue (0 ms) +41: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue (1 ms) 41: [ RUN ] SelectionCollectionTest.HandlesMissingMethodParamValue2 -41: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue2 (1 ms) +41: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue2 (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesMissingMethodParamValue3 41: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue3 (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser1 @@ -76753,29 +76783,29 @@ 41: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed1 41: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed1 (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed2 -41: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed2 (1 ms) +41: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed2 (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesUnsortedGroupReference -41: [ OK ] SelectionCollectionTest.HandlesUnsortedGroupReference (0 ms) +41: [ OK ] SelectionCollectionTest.HandlesUnsortedGroupReference (1 ms) 41: [ RUN ] SelectionCollectionTest.HandlesUnsortedGroupReferenceDelayed -41: [ OK ] SelectionCollectionTest.HandlesUnsortedGroupReferenceDelayed (1 ms) +41: [ OK ] SelectionCollectionTest.HandlesUnsortedGroupReferenceDelayed (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroup -41: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroup (0 ms) +41: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroup (1 ms) 41: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed 41: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed2 -41: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed2 (1 ms) +41: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed2 (0 ms) 41: [ RUN ] SelectionCollectionTest.RecoversFromMissingMoleculeInfo 41: [ OK ] SelectionCollectionTest.RecoversFromMissingMoleculeInfo (0 ms) 41: [ RUN ] SelectionCollectionTest.RecoversFromMissingAtomTypes -41: [ OK ] SelectionCollectionTest.RecoversFromMissingAtomTypes (0 ms) +41: [ OK ] SelectionCollectionTest.RecoversFromMissingAtomTypes (1 ms) 41: [ RUN ] SelectionCollectionTest.RecoversFromMissingPDBInfo -41: [ OK ] SelectionCollectionTest.RecoversFromMissingPDBInfo (1 ms) +41: [ OK ] SelectionCollectionTest.RecoversFromMissingPDBInfo (0 ms) 41: [ RUN ] SelectionCollectionTest.RecoversFromInvalidPermutation 41: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation (0 ms) 41: [ RUN ] SelectionCollectionTest.RecoversFromInvalidPermutation2 -41: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation2 (0 ms) +41: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation2 (1 ms) 41: [ RUN ] SelectionCollectionTest.RecoversFromInvalidPermutation3 -41: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation3 (1 ms) +41: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation3 (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets 41: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets2 @@ -76784,21 +76814,21 @@ 41: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets3 (0 ms) 41: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets4 41: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets4 (0 ms) -41: [----------] 29 tests from SelectionCollectionTest (14 ms total) +41: [----------] 29 tests from SelectionCollectionTest (9 ms total) 41: 41: [----------] 14 tests from SelectionCollectionInteractiveTest 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesBasicInput -41: [ OK ] SelectionCollectionInteractiveTest.HandlesBasicInput (0 ms) +41: [ OK ] SelectionCollectionInteractiveTest.HandlesBasicInput (1 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesContinuation 41: [ OK ] SelectionCollectionInteractiveTest.HandlesContinuation (0 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInput -41: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInput (0 ms) +41: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInput (1 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInput 41: [ OK ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInput (0 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesStatusWithGroups -41: [ OK ] SelectionCollectionInteractiveTest.HandlesStatusWithGroups (1 ms) +41: [ OK ] SelectionCollectionInteractiveTest.HandlesStatusWithGroups (0 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesStatusWithExistingSelections -41: [ OK ] SelectionCollectionInteractiveTest.HandlesStatusWithExistingSelections (1 ms) +41: [ OK ] SelectionCollectionInteractiveTest.HandlesStatusWithExistingSelections (0 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputStatus 41: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputStatus (0 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInputStatus @@ -76810,30 +76840,30 @@ 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesEmptySelections 41: [ OK ] SelectionCollectionInteractiveTest.HandlesEmptySelections (0 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesMultipleSelectionsOnLine -41: [ OK ] SelectionCollectionInteractiveTest.HandlesMultipleSelectionsOnLine (2 ms) +41: [ OK ] SelectionCollectionInteractiveTest.HandlesMultipleSelectionsOnLine (0 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesNoninteractiveInput -41: [ OK ] SelectionCollectionInteractiveTest.HandlesNoninteractiveInput (0 ms) +41: [ OK ] SelectionCollectionInteractiveTest.HandlesNoninteractiveInput (1 ms) 41: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputNoninteractively 41: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputNoninteractively (0 ms) -41: [----------] 14 tests from SelectionCollectionInteractiveTest (7 ms total) +41: [----------] 14 tests from SelectionCollectionInteractiveTest (6 ms total) 41: 41: [----------] 66 tests from SelectionCollectionDataTest 41: [ RUN ] SelectionCollectionDataTest.HandlesAllNone -41: [ OK ] SelectionCollectionDataTest.HandlesAllNone (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesAllNone (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesAtomnr -41: [ OK ] SelectionCollectionDataTest.HandlesAtomnr (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesAtomnr (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesResnr -41: [ OK ] SelectionCollectionDataTest.HandlesResnr (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesResnr (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesResIndex -41: [ OK ] SelectionCollectionDataTest.HandlesResIndex (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesResIndex (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesMolIndex -41: [ OK ] SelectionCollectionDataTest.HandlesMolIndex (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesMolIndex (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesAtomname 41: [ OK ] SelectionCollectionDataTest.HandlesAtomname (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesPdbAtomname 41: [ OK ] SelectionCollectionDataTest.HandlesPdbAtomname (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesAtomtype -41: [ OK ] SelectionCollectionDataTest.HandlesAtomtype (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesAtomtype (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesChain 41: [ OK ] SelectionCollectionDataTest.HandlesChain (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesMass @@ -76843,17 +76873,17 @@ 41: [ RUN ] SelectionCollectionDataTest.HandlesAltLoc 41: [ OK ] SelectionCollectionDataTest.HandlesAltLoc (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesInsertCode -41: [ OK ] SelectionCollectionDataTest.HandlesInsertCode (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesInsertCode (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesOccupancy -41: [ OK ] SelectionCollectionDataTest.HandlesOccupancy (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesOccupancy (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesBeta -41: [ OK ] SelectionCollectionDataTest.HandlesBeta (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesBeta (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesResname -41: [ OK ] SelectionCollectionDataTest.HandlesResname (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesResname (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesCoordinateKeywords 41: [ OK ] SelectionCollectionDataTest.HandlesCoordinateKeywords (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesSameResidue -41: [ OK ] SelectionCollectionDataTest.HandlesSameResidue (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesSameResidue (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesSameResidueName 41: [ OK ] SelectionCollectionDataTest.HandlesSameResidueName (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesPositionKeywords @@ -76861,23 +76891,23 @@ 41: [ RUN ] SelectionCollectionDataTest.HandlesDistanceKeyword 41: [ OK ] SelectionCollectionDataTest.HandlesDistanceKeyword (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesMinDistanceKeyword -41: [ OK ] SelectionCollectionDataTest.HandlesMinDistanceKeyword (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesMinDistanceKeyword (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesWithinKeyword 41: [ OK ] SelectionCollectionDataTest.HandlesWithinKeyword (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesInSolidAngleKeyword 41: [ OK ] SelectionCollectionDataTest.HandlesInSolidAngleKeyword (4 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesPermuteModifier -41: [ OK ] SelectionCollectionDataTest.HandlesPermuteModifier (2 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesPermuteModifier (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesPlusModifier -41: [ OK ] SelectionCollectionDataTest.HandlesPlusModifier (2 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesPlusModifier (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesMergeModifier -41: [ OK ] SelectionCollectionDataTest.HandlesMergeModifier (2 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesMergeModifier (1 ms) 41: [ RUN ] SelectionCollectionDataTest.ComputesMassesAndCharges -41: [ OK ] SelectionCollectionDataTest.ComputesMassesAndCharges (2 ms) +41: [ OK ] SelectionCollectionDataTest.ComputesMassesAndCharges (1 ms) 41: [ RUN ] SelectionCollectionDataTest.ComputesMassesAndChargesWithoutTopology 41: [ OK ] SelectionCollectionDataTest.ComputesMassesAndChargesWithoutTopology (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesFramesWithAtomSubsets -41: [ OK ] SelectionCollectionDataTest.HandlesFramesWithAtomSubsets (2 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesFramesWithAtomSubsets (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesSelectionNames 41: [ OK ] SelectionCollectionDataTest.HandlesSelectionNames (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesIndexGroupsInSelections @@ -76885,23 +76915,23 @@ 41: [ RUN ] SelectionCollectionDataTest.HandlesIndexGroupsInSelectionsDelayed 41: [ OK ] SelectionCollectionDataTest.HandlesIndexGroupsInSelectionsDelayed (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelections -41: [ OK ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelections (2 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelections (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelectionsDelayed 41: [ OK ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelectionsDelayed (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositions 41: [ OK ] SelectionCollectionDataTest.HandlesConstantPositions (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositionsWithModifiers -41: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionsWithModifiers (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionsWithModifiers (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesWithinConstantPositions 41: [ OK ] SelectionCollectionDataTest.HandlesWithinConstantPositions (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesOverlappingIntegerRanges 41: [ OK ] SelectionCollectionDataTest.HandlesOverlappingIntegerRanges (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesOverlappingRealRanges -41: [ OK ] SelectionCollectionDataTest.HandlesOverlappingRealRanges (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesOverlappingRealRanges (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesForcedStringMatchingMode -41: [ OK ] SelectionCollectionDataTest.HandlesForcedStringMatchingMode (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesForcedStringMatchingMode (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesWildcardMatching -41: [ OK ] SelectionCollectionDataTest.HandlesWildcardMatching (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesWildcardMatching (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesRegexMatching 41: [ OK ] SelectionCollectionDataTest.HandlesRegexMatching (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesBasicBoolean @@ -76915,15 +76945,15 @@ 41: [ RUN ] SelectionCollectionDataTest.HandlesPositionModifiersForKeywords 41: [ OK ] SelectionCollectionDataTest.HandlesPositionModifiersForKeywords (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesPositionModifiersForMethods -41: [ OK ] SelectionCollectionDataTest.HandlesPositionModifiersForMethods (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesPositionModifiersForMethods (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesKeywordOfPositions -41: [ OK ] SelectionCollectionDataTest.HandlesKeywordOfPositions (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesKeywordOfPositions (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesKeywordOfPositionsInArithmetic -41: [ OK ] SelectionCollectionDataTest.HandlesKeywordOfPositionsInArithmetic (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesKeywordOfPositionsInArithmetic (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesNumericComparisons -41: [ OK ] SelectionCollectionDataTest.HandlesNumericComparisons (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesNumericComparisons (2 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesArithmeticExpressions -41: [ OK ] SelectionCollectionDataTest.HandlesArithmeticExpressions (2 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesArithmeticExpressions (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesNumericVariables 41: [ OK ] SelectionCollectionDataTest.HandlesNumericVariables (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesComplexNumericVariables @@ -76933,13 +76963,13 @@ 41: [ RUN ] SelectionCollectionDataTest.HandlesPositionVariableInModifier 41: [ OK ] SelectionCollectionDataTest.HandlesPositionVariableInModifier (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositionInVariable -41: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionInVariable (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionInVariable (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesNumericConstantsInVariables 41: [ OK ] SelectionCollectionDataTest.HandlesNumericConstantsInVariables (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysis 41: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysis (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithVariables -41: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithVariables (0 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithVariables (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithMoreVariables 41: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithMoreVariables (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesUnusedVariables @@ -76947,36 +76977,36 @@ 41: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithStaticEvaluationGroups 41: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithStaticEvaluationGroups (1 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups -41: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups (1 ms) +41: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups (0 ms) 41: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups2 41: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups2 (1 ms) -41: [----------] 66 tests from SelectionCollectionDataTest (63 ms total) +41: [----------] 66 tests from SelectionCollectionDataTest (52 ms total) 41: 41: [----------] 17 tests from SelectionOptionTest 41: [ RUN ] SelectionOptionTest.ParsesSimpleSelection -41: [ OK ] SelectionOptionTest.ParsesSimpleSelection (1 ms) +41: [ OK ] SelectionOptionTest.ParsesSimpleSelection (0 ms) 41: [ RUN ] SelectionOptionTest.HandlesDynamicSelectionWhenStaticRequired 41: [ OK ] SelectionOptionTest.HandlesDynamicSelectionWhenStaticRequired (0 ms) 41: [ RUN ] SelectionOptionTest.HandlesNonAtomicSelectionWhenAtomsRequired -41: [ OK ] SelectionOptionTest.HandlesNonAtomicSelectionWhenAtomsRequired (0 ms) +41: [ OK ] SelectionOptionTest.HandlesNonAtomicSelectionWhenAtomsRequired (1 ms) 41: [ RUN ] SelectionOptionTest.ChecksForSortedAtomsWhenRequired -41: [ OK ] SelectionOptionTest.ChecksForSortedAtomsWhenRequired (1 ms) +41: [ OK ] SelectionOptionTest.ChecksForSortedAtomsWhenRequired (0 ms) 41: [ RUN ] SelectionOptionTest.ChecksEmptySelections 41: [ OK ] SelectionOptionTest.ChecksEmptySelections (0 ms) 41: [ RUN ] SelectionOptionTest.ChecksEmptyDelayedSelections -41: [ OK ] SelectionOptionTest.ChecksEmptyDelayedSelections (0 ms) +41: [ OK ] SelectionOptionTest.ChecksEmptyDelayedSelections (1 ms) 41: [ RUN ] SelectionOptionTest.HandlesTooManySelections 41: [ OK ] SelectionOptionTest.HandlesTooManySelections (0 ms) 41: [ RUN ] SelectionOptionTest.HandlesTooFewSelections -41: [ OK ] SelectionOptionTest.HandlesTooFewSelections (1 ms) +41: [ OK ] SelectionOptionTest.HandlesTooFewSelections (0 ms) 41: [ RUN ] SelectionOptionTest.HandlesDefaultSelectionText 41: [ OK ] SelectionOptionTest.HandlesDefaultSelectionText (0 ms) 41: [ RUN ] SelectionOptionTest.HandlesAdjuster 41: [ OK ] SelectionOptionTest.HandlesAdjuster (0 ms) 41: [ RUN ] SelectionOptionTest.HandlesDynamicWhenStaticRequiredWithAdjuster -41: [ OK ] SelectionOptionTest.HandlesDynamicWhenStaticRequiredWithAdjuster (0 ms) +41: [ OK ] SelectionOptionTest.HandlesDynamicWhenStaticRequiredWithAdjuster (1 ms) 41: [ RUN ] SelectionOptionTest.HandlesTooManySelectionsWithAdjuster -41: [ OK ] SelectionOptionTest.HandlesTooManySelectionsWithAdjuster (1 ms) +41: [ OK ] SelectionOptionTest.HandlesTooManySelectionsWithAdjuster (0 ms) 41: [ RUN ] SelectionOptionTest.HandlesTooFewSelectionsWithAdjuster 41: [ OK ] SelectionOptionTest.HandlesTooFewSelectionsWithAdjuster (0 ms) 41: [ RUN ] SelectionOptionTest.HandlesDelayedRequiredSelection @@ -76987,33 +77017,33 @@ 41: [ OK ] SelectionOptionTest.HandlesDelayedOptionalSelection (0 ms) 41: [ RUN ] SelectionOptionTest.HandlesDelayedSelectionWithAdjuster 41: [ OK ] SelectionOptionTest.HandlesDelayedSelectionWithAdjuster (0 ms) -41: [----------] 17 tests from SelectionOptionTest (5 ms total) +41: [----------] 17 tests from SelectionOptionTest (4 ms total) 41: 41: [----------] 9 tests from SelectionFileOptionTest 41: [ RUN ] SelectionFileOptionTest.HandlesSingleSelectionOptionFromFile -41: [ OK ] SelectionFileOptionTest.HandlesSingleSelectionOptionFromFile (1 ms) +41: [ OK ] SelectionFileOptionTest.HandlesSingleSelectionOptionFromFile (0 ms) 41: [ RUN ] SelectionFileOptionTest.HandlesTwoSeparateSelectionOptions -41: [ OK ] SelectionFileOptionTest.HandlesTwoSeparateSelectionOptions (0 ms) +41: [ OK ] SelectionFileOptionTest.HandlesTwoSeparateSelectionOptions (1 ms) 41: [ RUN ] SelectionFileOptionTest.HandlesTwoSelectionOptionsFromSingleFile 41: [ OK ] SelectionFileOptionTest.HandlesTwoSelectionOptionsFromSingleFile (0 ms) 41: [ RUN ] SelectionFileOptionTest.HandlesRequiredOptionFromFile -41: [ OK ] SelectionFileOptionTest.HandlesRequiredOptionFromFile (1 ms) +41: [ OK ] SelectionFileOptionTest.HandlesRequiredOptionFromFile (0 ms) 41: [ RUN ] SelectionFileOptionTest.HandlesRequiredOptionFromFileWithOtherOptionSet 41: [ OK ] SelectionFileOptionTest.HandlesRequiredOptionFromFileWithOtherOptionSet (0 ms) 41: [ RUN ] SelectionFileOptionTest.HandlesTwoRequiredOptionsFromSingleFile -41: [ OK ] SelectionFileOptionTest.HandlesTwoRequiredOptionsFromSingleFile (0 ms) +41: [ OK ] SelectionFileOptionTest.HandlesTwoRequiredOptionsFromSingleFile (1 ms) 41: [ RUN ] SelectionFileOptionTest.GivesErrorWithNoFile 41: [ OK ] SelectionFileOptionTest.GivesErrorWithNoFile (0 ms) 41: [ RUN ] SelectionFileOptionTest.GivesErrorWithNonExistentFile -41: [ OK ] SelectionFileOptionTest.GivesErrorWithNonExistentFile (1 ms) +41: [ OK ] SelectionFileOptionTest.GivesErrorWithNonExistentFile (0 ms) 41: [ RUN ] SelectionFileOptionTest.GivesErrorWithMultipleFiles 41: [ OK ] SelectionFileOptionTest.GivesErrorWithMultipleFiles (0 ms) -41: [----------] 9 tests from SelectionFileOptionTest (3 ms total) +41: [----------] 9 tests from SelectionFileOptionTest (2 ms total) 41: 41: [----------] Global test environment tear-down -41: [==========] 192 tests from 11 test cases ran. (310 ms total) +41: [==========] 192 tests from 11 test cases ran. (180 ms total) 41: [ PASSED ] 192 tests. -41/54 Test #41: SelectionUnitTests .................. Passed 0.36 sec +41/54 Test #41: SelectionUnitTests .................. Passed 0.20 sec test 42 Start 42: MdrunOutputTests @@ -77028,7 +77058,7 @@ 42: 42: [----------] 3 tests from WithDifferentOutputGroupSettings/MdrunCompressedXOutput 42: [ RUN ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/0 -42: Setting the LD random seed to -559361 +42: Setting the LD random seed to -452101253 42: Generated 3 of the 3 non-bonded parameter combinations 42: Generating 1-4 interactions: fudge = 0.5 42: Generated 3 of the 3 1-4 parameter combinations @@ -77073,9 +77103,9 @@ 42: Writing final coordinates. 42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.005 0.002 195.1 +42: Time: 0.005 0.003 195.8 42: (ns/day) (hour/ns) -42: Performance: 72.131 0.333 +42: Performance: 68.240 0.352 42: Reading frame 0 time 0.000 42: # Atoms 6 42: Reading frame 1 time 0.001 Last frame 1 time 0.001 @@ -77090,9 +77120,9 @@ 42: Forces 0 42: Box 2 0.001 42: Checking file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_0.xtc -42: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/0 (197 ms) +42: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/0 (89 ms) 42: [ RUN ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/1 -42: Setting the LD random seed to 1036516351 +42: Setting the LD random seed to -67399361 42: Generated 3 of the 3 non-bonded parameter combinations 42: Generating 1-4 interactions: fudge = 0.5 42: Generated 3 of the 3 1-4 parameter combinations @@ -77137,9 +77167,9 @@ 42: Writing final coordinates. 42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.002 0.001 191.3 +42: Time: 0.002 0.001 191.5 42: (ns/day) (hour/ns) -42: Performance: 135.904 0.177 +42: Performance: 160.101 0.150 42: Reading frame 0 time 0.000 42: # Atoms 6 42: Reading frame 1 time 0.001 Last frame 1 time 0.001 @@ -77154,9 +77184,9 @@ 42: Forces 0 42: Box 2 0.001 42: Checking file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_1.xtc -42: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/1 (27 ms) +42: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/1 (6 ms) 42: [ RUN ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/2 -42: Setting the LD random seed to -1484794004 +42: Setting the LD random seed to -69215426 42: Generated 3 of the 3 non-bonded parameter combinations 42: Generating 1-4 interactions: fudge = 0.5 42: Generated 3 of the 3 1-4 parameter combinations @@ -77200,13 +77230,10 @@ 42: 42: Writing final coordinates. 42: -42: NOTE: 16 % of the run time was spent in pair search, -42: you might want to increase nstlist (this has no effect on accuracy) -42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.050 0.025 199.4 +42: Time: 0.002 0.001 191.7 42: (ns/day) (hour/ns) -42: Performance: 6.856 3.501 +42: Performance: 177.467 0.135 42: Reading frame 0 time 0.000 42: # Atoms 3 42: Reading frame 1 time 0.001 Last frame 1 time 0.001 @@ -77221,8 +77248,8 @@ 42: Forces 0 42: Box 2 0.001 42: Checking file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_2.xtc -42: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/2 (47 ms) -42: [----------] 3 tests from WithDifferentOutputGroupSettings/MdrunCompressedXOutput (271 ms total) +42: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/2 (6 ms) +42: [----------] 3 tests from WithDifferentOutputGroupSettings/MdrunCompressedXOutput (101 ms total) 42: 42: [----------] 2 tests from Argon12/OutputFiles 42: [ RUN ] Argon12/OutputFiles.FilesArePresent/0 @@ -77272,10 +77299,10 @@ 42: Writing final coordinates. 42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.588 0.294 200.0 +42: Time: 0.003 0.002 194.9 42: (ns/day) (hour/ns) -42: Performance: 4.994 4.806 -42: [ OK ] Argon12/OutputFiles.FilesArePresent/0 (317 ms) +42: Performance: 950.122 0.025 +42: [ OK ] Argon12/OutputFiles.FilesArePresent/0 (6 ms) 42: [ RUN ] Argon12/OutputFiles.FilesArePresent/1 42: 42: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Argon12_OutputFiles_FilesArePresent_1_input.mdp]: @@ -77323,15 +77350,15 @@ 42: Writing final coordinates. 42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.004 0.002 195.2 +42: Time: 0.004 0.002 196.0 42: (ns/day) (hour/ns) -42: Performance: 725.373 0.033 -42: [ OK ] Argon12/OutputFiles.FilesArePresent/1 (28 ms) -42: [----------] 2 tests from Argon12/OutputFiles (345 ms total) +42: Performance: 814.247 0.029 +42: [ OK ] Argon12/OutputFiles.FilesArePresent/1 (7 ms) +42: [----------] 2 tests from Argon12/OutputFiles (13 ms total) 42: 42: [----------] 3 tests from MdrunCanWrite/Trajectories 42: [ RUN ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/0 -42: Setting the LD random seed to -1088701189 +42: Setting the LD random seed to -76310657 42: Generated 8 of the 10 non-bonded parameter combinations 42: Excluding 2 bonded neighbours molecule type 'Methanol' 42: Excluding 2 bonded neighbours molecule type 'SOL' @@ -77371,12 +77398,12 @@ 42: Writing final coordinates. 42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.041 0.020 199.2 +42: Time: 0.014 0.007 198.0 42: (ns/day) (hour/ns) -42: Performance: 29.609 0.811 -42: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/0 (39 ms) +42: Performance: 84.797 0.283 +42: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/0 (15 ms) 42: [ RUN ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/1 -42: Setting the LD random seed to -34670113 +42: Setting the LD random seed to -29446148 42: Generated 8 of the 10 non-bonded parameter combinations 42: Excluding 2 bonded neighbours molecule type 'Methanol' 42: Excluding 2 bonded neighbours molecule type 'SOL' @@ -77416,12 +77443,12 @@ 42: Writing final coordinates. 42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.088 0.044 199.6 +42: Time: 0.012 0.006 197.7 42: (ns/day) (hour/ns) -42: Performance: 13.657 1.757 -42: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/1 (143 ms) +42: Performance: 98.437 0.244 +42: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/1 (14 ms) 42: [ RUN ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/2 -42: Setting the LD random seed to -29630465 +42: Setting the LD random seed to 2116500447 42: Generated 8 of the 10 non-bonded parameter combinations 42: Excluding 2 bonded neighbours molecule type 'Methanol' 42: Excluding 2 bonded neighbours molecule type 'SOL' @@ -77461,15 +77488,15 @@ 42: Writing final coordinates. 42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.006 0.003 194.9 +42: Time: 0.006 0.003 196.1 42: (ns/day) (hour/ns) -42: Performance: 193.215 0.124 -42: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/2 (23 ms) -42: [----------] 3 tests from MdrunCanWrite/Trajectories (205 ms total) +42: Performance: 207.400 0.116 +42: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/2 (11 ms) +42: [----------] 3 tests from MdrunCanWrite/Trajectories (40 ms total) 42: 42: [----------] 3 tests from MdrunCanWrite/NptTrajectories 42: [ RUN ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/0 -42: Setting the LD random seed to -1824538727 +42: Setting the LD random seed to 1992144407 42: Generated 8 of the 10 non-bonded parameter combinations 42: Excluding 2 bonded neighbours molecule type 'Methanol' 42: Excluding 2 bonded neighbours molecule type 'SOL' @@ -77509,12 +77536,12 @@ 42: Writing final coordinates. 42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.003 0.002 190.9 +42: Time: 0.003 0.001 192.4 42: (ns/day) (hour/ns) -42: Performance: 157.400 0.152 -42: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/0 (14 ms) +42: Performance: 177.207 0.135 +42: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/0 (9 ms) 42: [ RUN ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/1 -42: Setting the LD random seed to -262727 +42: Setting the LD random seed to -1208246899 42: Generated 8 of the 10 non-bonded parameter combinations 42: Excluding 2 bonded neighbours molecule type 'Methanol' 42: Excluding 2 bonded neighbours molecule type 'SOL' @@ -77554,12 +77581,12 @@ 42: Writing final coordinates. 42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.003 0.002 190.9 +42: Time: 0.003 0.002 192.8 42: (ns/day) (hour/ns) -42: Performance: 158.780 0.151 -42: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/1 (16 ms) +42: Performance: 169.551 0.142 +42: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/1 (9 ms) 42: [ RUN ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/2 -42: Setting the LD random seed to 1458944363 +42: Setting the LD random seed to -302276615 42: Generated 8 of the 10 non-bonded parameter combinations 42: Excluding 2 bonded neighbours molecule type 'Methanol' 42: Excluding 2 bonded neighbours molecule type 'SOL' @@ -77599,16 +77626,16 @@ 42: Writing final coordinates. 42: 42: Core t (s) Wall t (s) (%) -42: Time: 0.003 0.002 190.7 +42: Time: 0.004 0.002 194.3 42: (ns/day) (hour/ns) -42: Performance: 154.449 0.155 -42: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/2 (16 ms) -42: [----------] 3 tests from MdrunCanWrite/NptTrajectories (48 ms total) +42: Performance: 121.376 0.198 +42: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/2 (10 ms) +42: [----------] 3 tests from MdrunCanWrite/NptTrajectories (28 ms total) 42: 42: [----------] Global test environment tear-down -42: [==========] 12 tests from 5 test cases ran. (872 ms total) +42: [==========] 12 tests from 5 test cases ran. (186 ms total) 42: [ PASSED ] 12 tests. -42/54 Test #42: MdrunOutputTests .................... Passed 0.89 sec +42/54 Test #42: MdrunOutputTests .................... Passed 0.20 sec test 43 Start 43: MdrunModulesTests @@ -77618,7 +77645,7 @@ 43: [----------] Global test environment set-up. 43: [----------] 4 tests from DensityFittingTest 43: [ RUN ] DensityFittingTest.EnergyMinimizationEnergyCorrectInnerProduct -43: Setting the LD random seed to -883589161 +43: Setting the LD random seed to -272007 43: Generated 1 of the 1 non-bonded parameter combinations 43: Excluding 1 bonded neighbours molecule type 'Argon' 43: Number of degrees of freedom in T-Coupling group rest is 33.00 @@ -77652,9 +77679,9 @@ 43: Norm of force = 1.07544474716821e+03 43: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/DensityFittingTest_EnergyMinimizationEnergyCorrectInnerProduct.edr as double precision energy file 43: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Last energy frame read 2 time 2.000 This run will generate roughly 0 Mb of data -43: [ OK ] DensityFittingTest.EnergyMinimizationEnergyCorrectInnerProduct (193 ms) +43: [ OK ] DensityFittingTest.EnergyMinimizationEnergyCorrectInnerProduct (82 ms) 43: [ RUN ] DensityFittingTest.EnergyMinimizationEnergyCorrectForRelativeEntropy -43: Setting the LD random seed to -1434363 +43: Setting the LD random seed to 1993334779 43: Generated 1 of the 1 non-bonded parameter combinations 43: Excluding 1 bonded neighbours molecule type 'Argon' 43: Number of degrees of freedom in T-Coupling group rest is 33.00 @@ -77688,17 +77715,17 @@ 43: Norm of force = 1.25497916295893e+03 43: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/DensityFittingTest_EnergyMinimizationEnergyCorrectForRelativeEntropy.edr as double precision energy file 43: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Last energy frame read 2 time 2.000 This run will generate roughly 0 Mb of data -43: [ OK ] DensityFittingTest.EnergyMinimizationEnergyCorrectForRelativeEntropy (17 ms) +43: [ OK ] DensityFittingTest.EnergyMinimizationEnergyCorrectForRelativeEntropy (6 ms) 43: [ RUN ] DensityFittingTest.GromppErrorWhenEnergyEvaluationFrequencyMismatch 43: 43: [WARNING] /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/src/gtest-death-test.cc:836:: Death tests use fork(), which is unsafe particularly in a threaded context. For this test, Google Test detected 2 threads. -43: [ OK ] DensityFittingTest.GromppErrorWhenEnergyEvaluationFrequencyMismatch (7 ms) +43: [ OK ] DensityFittingTest.GromppErrorWhenEnergyEvaluationFrequencyMismatch (8 ms) 43: [ RUN ] DensityFittingTest.CheckpointWorks 43: 43: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/DensityFittingTest_CheckpointWorks_input.mdp]: 43: Setting nstcalcenergy (100) equal to nstenergy (2) 43: -43: Setting the LD random seed to 1971056547 +43: Setting the LD random seed to -12861494 43: Generated 1 of the 1 non-bonded parameter combinations 43: Excluding 1 bonded neighbours molecule type 'Argon' 43: Number of degrees of freedom in T-Coupling group rest is 33.00 @@ -77735,9 +77762,9 @@ 43: Writing final coordinates. 43: 43: Core t (s) Wall t (s) (%) -43: Time: 0.004 0.002 195.8 +43: Time: 0.005 0.003 195.8 43: (ns/day) (hour/ns) -43: Performance: 115.202 0.208 +43: Performance: 95.148 0.252 43: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 43: log). 43: The current CPU can measure timings more accurately than the code in @@ -77761,12 +77788,12 @@ 43: Writing final coordinates. 43: 43: Core t (s) Wall t (s) (%) -43: Time: 0.002 0.001 188.1 +43: Time: 0.002 0.001 191.2 43: (ns/day) (hour/ns) -43: Performance: 519.329 0.046 +43: Performance: 422.856 0.057 43: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/DensityFittingTest_CheckpointWorks.edr as double precision energy file -43: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.002 Last energy frame read 1 time 0.002 [ OK ] DensityFittingTest.CheckpointWorks (14 ms) -43: [----------] 4 tests from DensityFittingTest (231 ms total) +43: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.002 Last energy frame read 1 time 0.002 [ OK ] DensityFittingTest.CheckpointWorks (12 ms) +43: [----------] 4 tests from DensityFittingTest (108 ms total) 43: 43: [----------] 4 tests from MimicTest 43: [ RUN ] MimicTest.OneQuantumMol @@ -77775,7 +77802,7 @@ 43: For a correct single-point energy evaluation with nsteps = 0, use 43: continuation = yes to avoid constraining the input coordinates. 43: -43: Setting the LD random seed to -1663576097 +43: Setting the LD random seed to -1344521 43: Generated 10 of the 10 non-bonded parameter combinations 43: Generating 1-4 interactions: fudge = 0.5 43: Generated 10 of the 10 1-4 parameter combinations @@ -77814,23 +77841,23 @@ 43: Reading frames from gro file 'Generated by gmx solvate', 12 atoms. 43: Reading frame 0 time 0.000 Last frame 0 time 0.000 43: -43: NOTE: 20 % of the run time was spent in pair search, +43: NOTE: 26 % of the run time was spent in pair search, 43: you might want to increase nstlist (this has no effect on accuracy) 43: 43: Core t (s) Wall t (s) (%) -43: Time: 0.000 0.000 187.7 +43: Time: 0.000 0.000 187.1 43: (ns/day) (hour/ns) -43: Performance: 370.919 0.065 +43: Performance: 339.632 0.071 43: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_OneQuantumMol.edr as double precision energy file 43: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -43: [ OK ] MimicTest.OneQuantumMol (10 ms) +43: [ OK ] MimicTest.OneQuantumMol (5 ms) 43: [ RUN ] MimicTest.AllQuantumMol 43: 43: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_AllQuantumMol_input.mdp]: 43: For a correct single-point energy evaluation with nsteps = 0, use 43: continuation = yes to avoid constraining the input coordinates. 43: -43: Setting the LD random seed to -371069467 +43: Setting the LD random seed to -59651365 43: Generated 10 of the 10 non-bonded parameter combinations 43: Generating 1-4 interactions: fudge = 0.5 43: Generated 10 of the 10 1-4 parameter combinations @@ -77869,23 +77896,23 @@ 43: Reading frames from gro file 'Generated by gmx solvate', 12 atoms. 43: Reading frame 0 time 0.000 Last frame 0 time 0.000 43: -43: NOTE: 20 % of the run time was spent in pair search, +43: NOTE: 23 % of the run time was spent in pair search, 43: you might want to increase nstlist (this has no effect on accuracy) 43: 43: Core t (s) Wall t (s) (%) 43: Time: 0.000 0.000 187.3 43: (ns/day) (hour/ns) -43: Performance: 342.198 0.070 +43: Performance: 396.052 0.061 43: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_AllQuantumMol.edr as double precision energy file 43: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -43: [ OK ] MimicTest.AllQuantumMol (19 ms) +43: [ OK ] MimicTest.AllQuantumMol (5 ms) 43: [ RUN ] MimicTest.TwoQuantumMol 43: 43: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_TwoQuantumMol_input.mdp]: 43: For a correct single-point energy evaluation with nsteps = 0, use 43: continuation = yes to avoid constraining the input coordinates. 43: -43: Setting the LD random seed to -270977073 +43: Setting the LD random seed to 508939253 43: Generated 10 of the 10 non-bonded parameter combinations 43: Generating 1-4 interactions: fudge = 0.5 43: Generated 10 of the 10 1-4 parameter combinations @@ -77924,23 +77951,23 @@ 43: Reading frames from gro file 'Generated by gmx solvate', 12 atoms. 43: Reading frame 0 time 0.000 Last frame 0 time 0.000 43: -43: NOTE: 19 % of the run time was spent in pair search, +43: NOTE: 24 % of the run time was spent in pair search, 43: you might want to increase nstlist (this has no effect on accuracy) 43: 43: Core t (s) Wall t (s) (%) -43: Time: 0.000 0.000 187.7 +43: Time: 0.000 0.000 188.7 43: (ns/day) (hour/ns) -43: Performance: 348.450 0.069 +43: Performance: 373.596 0.064 43: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_TwoQuantumMol.edr as double precision energy file 43: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -43: [ OK ] MimicTest.TwoQuantumMol (16 ms) +43: [ OK ] MimicTest.TwoQuantumMol (5 ms) 43: [ RUN ] MimicTest.BondCuts 43: 43: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_BondCuts_input.mdp]: 43: For a correct single-point energy evaluation with nsteps = 0, use 43: continuation = yes to avoid constraining the input coordinates. 43: -43: Setting the LD random seed to -558438657 +43: Setting the LD random seed to 2147057663 43: Generated 2211 of the 2211 non-bonded parameter combinations 43: Generating 1-4 interactions: fudge = 0.5 43: Generated 2211 of the 2211 1-4 parameter combinations @@ -77979,25 +78006,25 @@ 43: Reading frames from gro file 'Alanine dipeptide in water', 23 atoms. 43: Reading frame 0 time 0.000 Last frame 0 time 0.000 43: -43: NOTE: 17 % of the run time was spent in pair search, +43: NOTE: 15 % of the run time was spent in pair search, 43: you might want to increase nstlist (this has no effect on accuracy) 43: 43: Core t (s) Wall t (s) (%) -43: Time: 0.001 0.000 191.5 +43: Time: 0.001 0.001 192.1 43: (ns/day) (hour/ns) -43: Performance: 183.302 0.131 +43: Performance: 124.190 0.193 43: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_BondCuts.edr as double precision energy file 43: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 300.368 K 43: Calculated rlist for 1x1 atom pair-list as 1.034 nm, buffer size 0.034 nm 43: Set rlist, assuming 4x4 atom pair-list, to 1.025 nm, buffer size 0.025 nm 43: Note that mdrun will redetermine rlist based on the actual pair-list setup 43: This run will generate roughly 0 Mb of data -43: [ OK ] MimicTest.BondCuts (45 ms) -43: [----------] 4 tests from MimicTest (90 ms total) +43: [ OK ] MimicTest.BondCuts (25 ms) +43: [----------] 4 tests from MimicTest (41 ms total) 43: 43: [----------] 2 tests from WithIntegrator/ImdTest 43: [ RUN ] WithIntegrator/ImdTest.ImdCanRun/0 -43: Setting the LD random seed to -1075316941 +43: Setting the LD random seed to 2124737974 43: Generated 20503 of the 20503 non-bonded parameter combinations 43: Generating 1-4 interactions: fudge = 1 43: Generated 17396 of the 20503 1-4 parameter combinations @@ -78039,7 +78066,7 @@ 43: IMD: Pulling from IMD remote is enabled (-imdpull). 43: IMD: Setting port for connection requests to 0. 43: IMD: Setting up incoming socket. -43: IMD: Listening for IMD connection on port 57381. +43: IMD: Listening for IMD connection on port 60907. 43: IMD: -imdwait not set, starting simulation. 43: starting mdrun 'Glycine' 43: 2 steps, 0.0 ps. @@ -78052,17 +78079,17 @@ 43: Writing final coordinates. 43: 43: Core t (s) Wall t (s) (%) -43: Time: 0.002 0.001 188.5 +43: Time: 0.003 0.001 190.6 43: (ns/day) (hour/ns) -43: Performance: 445.194 0.054 -43: [ OK ] WithIntegrator/ImdTest.ImdCanRun/0 (305 ms) +43: Performance: 348.338 0.069 +43: [ OK ] WithIntegrator/ImdTest.ImdCanRun/0 (164 ms) 43: [ RUN ] WithIntegrator/ImdTest.ImdCanRun/1 43: 43: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithIntegrator_ImdTest_ImdCanRun_1_input.mdp]: 43: Setting tcoupl from 'V-rescale' to 'no'. Temperature coupling does not 43: apply to steep. 43: -43: Setting the LD random seed to -558047362 +43: Setting the LD random seed to -42057867 43: Generated 20503 of the 20503 non-bonded parameter combinations 43: Generating 1-4 interactions: fudge = 1 43: Generated 17396 of the 20503 1-4 parameter combinations @@ -78095,7 +78122,7 @@ 43: IMD: Pulling from IMD remote is enabled (-imdpull). 43: IMD: Setting port for connection requests to 0. 43: IMD: Setting up incoming socket. -43: IMD: Listening for IMD connection on port 33099. +43: IMD: Listening for IMD connection on port 54975. 43: IMD: -imdwait not set, starting simulation. 43: 43: Steepest Descents: @@ -78112,13 +78139,13 @@ 43: Maximum force = 1.77948604657896e+04 on atom 9 43: Norm of force = 7.87328617833980e+03 43: This run will generate roughly 0 Mb of data -43: [ OK ] WithIntegrator/ImdTest.ImdCanRun/1 (300 ms) -43: [----------] 2 tests from WithIntegrator/ImdTest (605 ms total) +43: [ OK ] WithIntegrator/ImdTest.ImdCanRun/1 (152 ms) +43: [----------] 2 tests from WithIntegrator/ImdTest (317 ms total) 43: 43: [----------] Global test environment tear-down -43: [==========] 10 tests from 3 test cases ran. (926 ms total) +43: [==========] 10 tests from 3 test cases ran. (466 ms total) 43: [ PASSED ] 10 tests. -43/54 Test #43: MdrunModulesTests ................... Passed 0.97 sec +43/54 Test #43: MdrunModulesTests ................... Passed 0.48 sec test 44 Start 44: MdrunIOTests @@ -78133,7 +78160,7 @@ 44: For a correct single-point energy evaluation with nsteps = 0, use 44: continuation = yes to avoid constraining the input coordinates. 44: -44: Setting the LD random seed to -152028161 +44: Setting the LD random seed to -550668321 44: Generated 8 of the 10 non-bonded parameter combinations 44: Excluding 2 bonded neighbours molecule type 'Methanol' 44: Excluding 2 bonded neighbours molecule type 'SOL' @@ -78156,14 +78183,14 @@ 44: Set rlist, assuming 4x4 atom pair-list, to 1.056 nm, buffer size 0.056 nm 44: Note that mdrun will redetermine rlist based on the actual pair-list setup 44: This run will generate roughly 0 Mb of data -44: [ OK ] GromppTest.EmptyMdpFileWorks (12 ms) +44: [ OK ] GromppTest.EmptyMdpFileWorks (5 ms) 44: [ RUN ] GromppTest.SimulatedAnnealingWorks 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/GromppTest_SimulatedAnnealingWorks_input.mdp]: 44: For a correct single-point energy evaluation with nsteps = 0, use 44: continuation = yes to avoid constraining the input coordinates. 44: -44: Setting the LD random seed to -720212386 +44: Setting the LD random seed to -939569185 44: Generated 8 of the 10 non-bonded parameter combinations 44: Excluding 2 bonded neighbours molecule type 'Methanol' 44: Excluding 2 bonded neighbours molecule type 'SOL' @@ -78192,14 +78219,14 @@ 44: Set rlist, assuming 4x4 atom pair-list, to 1.056 nm, buffer size 0.056 nm 44: Note that mdrun will redetermine rlist based on the actual pair-list setup 44: This run will generate roughly 0 Mb of data -44: [ OK ] GromppTest.SimulatedAnnealingWorks (4 ms) +44: [ OK ] GromppTest.SimulatedAnnealingWorks (5 ms) 44: [ RUN ] GromppTest.SimulatedAnnealingWorksWithMultipleGroups 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/GromppTest_SimulatedAnnealingWorksWithMultipleGroups_input.mdp]: 44: For a correct single-point energy evaluation with nsteps = 0, use 44: continuation = yes to avoid constraining the input coordinates. 44: -44: Setting the LD random seed to 1859826047 +44: Setting the LD random seed to -1653129837 44: Generated 8 of the 10 non-bonded parameter combinations 44: Excluding 2 bonded neighbours molecule type 'Methanol' 44: Excluding 2 bonded neighbours molecule type 'SOL' @@ -78234,12 +78261,12 @@ 44: Set rlist, assuming 4x4 atom pair-list, to 1.056 nm, buffer size 0.056 nm 44: Note that mdrun will redetermine rlist based on the actual pair-list setup 44: This run will generate roughly 0 Mb of data -44: [ OK ] GromppTest.SimulatedAnnealingWorksWithMultipleGroups (12 ms) -44: [----------] 3 tests from GromppTest (28 ms total) +44: [ OK ] GromppTest.SimulatedAnnealingWorksWithMultipleGroups (4 ms) +44: [----------] 3 tests from GromppTest (14 ms total) 44: 44: [----------] 6 tests from MdrunTerminationTest 44: [ RUN ] MdrunTerminationTest.CheckpointRestartAppendsByDefault -44: Setting the LD random seed to -1435422783 +44: Setting the LD random seed to -134482193 44: Generated 3 of the 3 non-bonded parameter combinations 44: Generating 1-4 interactions: fudge = 0.5 44: Generated 3 of the 3 1-4 parameter combinations @@ -78280,9 +78307,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.006 0.003 194.9 +44: Time: 0.006 0.003 195.8 44: (ns/day) (hour/ns) -44: Performance: 87.916 0.273 +44: Performance: 89.390 0.268 44: Reading toplogy and stuff from /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartAppendsByDefault.tpr 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartAppendsByDefault.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Setting nsteps to 4 @@ -78309,12 +78336,12 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 188.2 +44: Time: 0.002 0.001 189.7 44: (ns/day) (hour/ns) -44: Performance: 266.789 0.090 -44: [ OK ] MdrunTerminationTest.CheckpointRestartAppendsByDefault (205 ms) +44: Performance: 264.324 0.091 +44: [ OK ] MdrunTerminationTest.CheckpointRestartAppendsByDefault (88 ms) 44: [ RUN ] MdrunTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts -44: Setting the LD random seed to -269568286 +44: Setting the LD random seed to -1082394658 44: Generated 3 of the 3 non-bonded parameter combinations 44: Generating 1-4 interactions: fudge = 0.5 44: Generated 3 of the 3 1-4 parameter combinations @@ -78347,20 +78374,20 @@ 44: starting mdrun 'spc2' 44: 100 steps, 0.1 ps. 44: -44: Step 0: Run time exceeded 0.000 hours, will terminate the run within 2 steps +44: Step 2: Run time exceeded 0.000 hours, will terminate the run within 2 steps 44: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 298 K 44: Calculated rlist for 1x1 atom pair-list as 1.026 nm, buffer size 0.026 nm 44: Set rlist, assuming 4x4 atom pair-list, to 1.024 nm, buffer size 0.024 nm 44: Note that mdrun will redetermine rlist based on the actual pair-list setup 44: This run will generate roughly 0 Mb of data 44: -44: NOTE: 36 % of the run time was spent in pair search, +44: NOTE: 13 % of the run time was spent in pair search, 44: you might want to increase nstlist (this has no effect on accuracy) 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.066 0.033 199.6 +44: Time: 0.002 0.001 192.1 44: (ns/day) (hour/ns) -44: Performance: 5.194 4.621 +44: Performance: 279.351 0.086 44: Reading toplogy and stuff from /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_WritesCheckpointAfterMaxhTerminationAndThenRestarts.tpr 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_WritesCheckpointAfterMaxhTerminationAndThenRestarts.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Setting nsteps to 102 @@ -78382,17 +78409,17 @@ 44: Using 2 OpenMP threads 44: 44: starting mdrun 'spc2' -44: 102 steps, 0.1 ps (continuing from step 1, 0.0 ps). +44: 102 steps, 0.1 ps (continuing from step 3, 0.0 ps). 44: 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.024 0.012 199.0 +44: Time: 0.007 0.004 197.1 44: (ns/day) (hour/ns) -44: Performance: 737.722 0.033 -44: [ OK ] MdrunTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts (71 ms) +44: Performance: 2381.154 0.010 +44: [ OK ] MdrunTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts (13 ms) 44: [ RUN ] MdrunTerminationTest.CheckpointRestartWithNoAppendWorksAndCannotLaterAppend -44: Setting the LD random seed to -33686530 +44: Setting the LD random seed to -1480602384 44: Generated 3 of the 3 non-bonded parameter combinations 44: Generating 1-4 interactions: fudge = 0.5 44: Generated 3 of the 3 1-4 parameter combinations @@ -78433,9 +78460,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 188.6 +44: Time: 0.002 0.001 189.6 44: (ns/day) (hour/ns) -44: Performance: 221.328 0.108 +44: Performance: 223.558 0.107 44: Reading toplogy and stuff from /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWithNoAppendWorksAndCannotLaterAppend.tpr 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWithNoAppendWorksAndCannotLaterAppend.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Setting nsteps to 4 @@ -78462,10 +78489,13 @@ 44: 44: Writing final coordinates. 44: +44: NOTE: 18 % of the run time was spent in pair search, +44: you might want to increase nstlist (this has no effect on accuracy) +44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 195.1 +44: Time: 0.002 0.001 196.5 44: (ns/day) (hour/ns) -44: Performance: 274.675 0.087 +44: Performance: 221.508 0.108 44: Reading toplogy and stuff from /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWithNoAppendWorksAndCannotLaterAppend.tpr 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWithNoAppendWorksAndCannotLaterAppend.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Setting nsteps to 6 @@ -78492,10 +78522,13 @@ 44: 44: Writing final coordinates. 44: +44: NOTE: 16 % of the run time was spent in pair search, +44: you might want to increase nstlist (this has no effect on accuracy) +44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 194.4 +44: Time: 0.002 0.001 196.3 44: (ns/day) (hour/ns) -44: Performance: 228.828 0.105 +44: Performance: 225.553 0.106 44: Reading toplogy and stuff from /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWithNoAppendWorksAndCannotLaterAppend.tpr 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWithNoAppendWorksAndCannotLaterAppend.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Setting nsteps to 8 @@ -78523,9 +78556,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 194.3 +44: Time: 0.002 0.001 196.5 44: (ns/day) (hour/ns) -44: Performance: 257.134 0.093 +44: Performance: 236.391 0.102 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -78545,16 +78578,16 @@ 44: starting mdrun 'spc2' 44: 8 steps, 0.0 ps (continuing from step 8, 0.0 ps). 44: -44: NOTE: 26 % of the run time was spent in pair search, +44: NOTE: 29 % of the run time was spent in pair search, 44: you might want to increase nstlist (this has no effect on accuracy) 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.000 0.000 178.4 +44: Time: 0.000 0.000 182.6 44: (ns/day) (hour/ns) -44: Performance: 632.440 0.038 -44: [ OK ] MdrunTerminationTest.CheckpointRestartWithNoAppendWorksAndCannotLaterAppend (95 ms) +44: Performance: 533.708 0.045 +44: [ OK ] MdrunTerminationTest.CheckpointRestartWithNoAppendWorksAndCannotLaterAppend (20 ms) 44: [ RUN ] MdrunTerminationTest.CheckpointRestartWorksEvenWithMissingCheckpointFile -44: Setting the LD random seed to -1075318959 +44: Setting the LD random seed to -23186434 44: Generated 3 of the 3 non-bonded parameter combinations 44: Generating 1-4 interactions: fudge = 0.5 44: Generated 3 of the 3 1-4 parameter combinations @@ -78595,9 +78628,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 187.9 +44: Time: 0.002 0.001 191.3 44: (ns/day) (hour/ns) -44: Performance: 254.665 0.094 +44: Performance: 226.398 0.106 44: Reading toplogy and stuff from /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWorksEvenWithMissingCheckpointFile.tpr 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWorksEvenWithMissingCheckpointFile.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Setting nsteps to 4 @@ -78625,12 +78658,12 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 189.2 +44: Time: 0.002 0.001 192.3 44: (ns/day) (hour/ns) -44: Performance: 373.750 0.064 -44: [ OK ] MdrunTerminationTest.CheckpointRestartWorksEvenWithMissingCheckpointFile (41 ms) +44: Performance: 380.900 0.063 +44: [ OK ] MdrunTerminationTest.CheckpointRestartWorksEvenWithMissingCheckpointFile (10 ms) 44: [ RUN ] MdrunTerminationTest.CheckpointRestartWorksEvenWithAppendAndMissingCheckpointFile -44: Setting the LD random seed to -33604169 +44: Setting the LD random seed to -2030191635 44: Generated 3 of the 3 non-bonded parameter combinations 44: Generating 1-4 interactions: fudge = 0.5 44: Generated 3 of the 3 1-4 parameter combinations @@ -78671,17 +78704,17 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 187.6 +44: Time: 0.002 0.001 192.2 44: (ns/day) (hour/ns) -44: Performance: 234.758 0.102 +44: Performance: 207.791 0.116 44: Reading toplogy and stuff from /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWorksEvenWithAppendAndMissingCheckpointFile.tpr 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWorksEvenWithAppendAndMissingCheckpointFile.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Setting nsteps to 4 44: Writing statusfile with starting step 0 and length 4 steps... 44: time 0.000 and length 0.004 ps -44: [ OK ] MdrunTerminationTest.CheckpointRestartWorksEvenWithAppendAndMissingCheckpointFile (17 ms) +44: [ OK ] MdrunTerminationTest.CheckpointRestartWorksEvenWithAppendAndMissingCheckpointFile (7 ms) 44: [ RUN ] MdrunTerminationTest.RunWithNoAppendCreatesPartFiles -44: Setting the LD random seed to -1653342217 +44: Setting the LD random seed to -941694981 44: Generated 3 of the 3 non-bonded parameter combinations 44: Generating 1-4 interactions: fudge = 0.5 44: Generated 3 of the 3 1-4 parameter combinations @@ -78722,9 +78755,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 188.4 +44: Time: 0.002 0.001 191.4 44: (ns/day) (hour/ns) -44: Performance: 264.839 0.091 +44: Performance: 218.569 0.110 44: Reading toplogy and stuff from /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_RunWithNoAppendCreatesPartFiles.tpr 44: Reading file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_RunWithNoAppendCreatesPartFiles.tpr, VERSION 2020.6-Debian-2020.6-2 (double precision) 44: Setting nsteps to 4 @@ -78752,11 +78785,11 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 194.5 +44: Time: 0.002 0.001 195.9 44: (ns/day) (hour/ns) -44: Performance: 245.077 0.098 -44: [ OK ] MdrunTerminationTest.RunWithNoAppendCreatesPartFiles (31 ms) -44: [----------] 6 tests from MdrunTerminationTest (461 ms total) +44: Performance: 250.038 0.096 +44: [ OK ] MdrunTerminationTest.RunWithNoAppendCreatesPartFiles (11 ms) +44: [----------] 6 tests from MdrunTerminationTest (151 ms total) 44: 44: [----------] 12 tests from NormalIntegrators/MdrunNoAppendContinuationIsExact 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/0 @@ -78831,9 +78864,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.028 0.014 199.0 +44: Time: 0.004 0.002 193.4 44: (ns/day) (hour/ns) -44: Performance: 103.430 0.232 +44: Performance: 761.696 0.032 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -78855,9 +78888,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.027 0.014 199.0 +44: Time: 0.003 0.002 194.2 44: (ns/day) (hour/ns) -44: Performance: 57.350 0.418 +44: Performance: 449.489 0.053 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -78879,13 +78912,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.025 0.013 198.9 +44: Time: 0.003 0.001 193.9 44: (ns/day) (hour/ns) -44: Performance: 61.169 0.392 +44: Performance: 528.948 0.045 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_0_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_0_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_0_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (63 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (19 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/1 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_1_input.mdp]: @@ -78958,9 +78991,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.028 0.014 199.1 +44: Time: 0.004 0.002 195.9 44: (ns/day) (hour/ns) -44: Performance: 104.950 0.229 +44: Performance: 721.888 0.033 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -78982,9 +79015,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.011 0.006 198.6 +44: Time: 0.003 0.002 195.8 44: (ns/day) (hour/ns) -44: Performance: 136.196 0.176 +44: Performance: 513.782 0.047 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -79006,13 +79039,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.002 195.7 +44: Time: 0.004 0.002 197.4 44: (ns/day) (hour/ns) -44: Performance: 463.741 0.052 +44: Performance: 437.432 0.055 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_1_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_1_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_1_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (50 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (19 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/2 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_2_input.mdp]: @@ -79076,9 +79109,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.002 193.5 +44: Time: 0.004 0.002 192.5 44: (ns/day) (hour/ns) -44: Performance: 943.574 0.025 +44: Performance: 799.869 0.030 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -79101,9 +79134,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.001 190.7 +44: Time: 0.003 0.001 193.7 44: (ns/day) (hour/ns) -44: Performance: 557.806 0.043 +44: Performance: 569.295 0.042 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -79126,13 +79159,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 191.7 +44: Time: 0.003 0.001 193.9 44: (ns/day) (hour/ns) -44: Performance: 647.378 0.037 +44: Performance: 543.854 0.044 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_2_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_2_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_2_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (44 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (17 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/3 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_3_input.mdp]: @@ -79196,9 +79229,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.002 193.2 +44: Time: 0.003 0.002 195.0 44: (ns/day) (hour/ns) -44: Performance: 845.306 0.028 +44: Performance: 854.333 0.028 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -79221,9 +79254,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 191.7 +44: Time: 0.003 0.001 194.2 44: (ns/day) (hour/ns) -44: Performance: 666.835 0.036 +44: Performance: 529.893 0.045 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -79246,13 +79279,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.001 192.5 +44: Time: 0.003 0.001 193.4 44: (ns/day) (hour/ns) -44: Performance: 557.520 0.043 +44: Performance: 572.091 0.042 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_3_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_3_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_3_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (35 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (17 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/4 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_4_input.mdp]: @@ -79341,9 +79374,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.028 0.014 199.0 +44: Time: 0.004 0.002 195.3 44: (ns/day) (hour/ns) -44: Performance: 106.071 0.226 +44: Performance: 718.520 0.033 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -79365,9 +79398,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.025 0.013 199.0 +44: Time: 0.003 0.001 193.0 44: (ns/day) (hour/ns) -44: Performance: 61.598 0.390 +44: Performance: 575.625 0.042 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -79389,13 +79422,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.001 192.0 +44: Time: 0.003 0.001 193.9 44: (ns/day) (hour/ns) -44: Performance: 596.578 0.040 +44: Performance: 575.625 0.042 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_4_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_4_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_4_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/4 (59 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/4 (18 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/5 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_5_input.mdp]: @@ -79484,9 +79517,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.004 0.002 197.3 +44: Time: 0.004 0.002 196.6 44: (ns/day) (hour/ns) -44: Performance: 701.582 0.034 +44: Performance: 659.875 0.036 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -79508,9 +79541,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.002 196.0 +44: Time: 0.003 0.002 196.7 44: (ns/day) (hour/ns) -44: Performance: 503.627 0.048 +44: Performance: 503.783 0.048 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -79532,13 +79565,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.027 0.014 199.4 +44: Time: 0.003 0.002 196.5 44: (ns/day) (hour/ns) -44: Performance: 57.062 0.421 +44: Performance: 494.540 0.049 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_5_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_5_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_5_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/5 (54 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/5 (19 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/6 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_6_input.mdp]: @@ -79618,9 +79651,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.004 0.002 192.2 +44: Time: 0.004 0.002 192.6 44: (ns/day) (hour/ns) -44: Performance: 781.900 0.031 +44: Performance: 734.804 0.033 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -79643,9 +79676,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.001 191.0 +44: Time: 0.003 0.001 193.0 44: (ns/day) (hour/ns) -44: Performance: 555.999 0.043 +44: Performance: 585.756 0.041 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -79668,13 +79701,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.001 190.9 +44: Time: 0.003 0.002 192.6 44: (ns/day) (hour/ns) -44: Performance: 542.858 0.044 +44: Performance: 515.651 0.047 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_6_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_6_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_6_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/6 (64 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/6 (19 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/7 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_7_input.mdp]: @@ -79754,9 +79787,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.004 0.002 192.6 +44: Time: 0.004 0.002 195.2 44: (ns/day) (hour/ns) -44: Performance: 778.344 0.031 +44: Performance: 708.114 0.034 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -79779,9 +79812,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.001 190.3 +44: Time: 0.003 0.001 193.2 44: (ns/day) (hour/ns) -44: Performance: 520.922 0.046 +44: Performance: 557.329 0.043 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -79804,13 +79837,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.001 191.5 +44: Time: 0.003 0.001 192.9 44: (ns/day) (hour/ns) -44: Performance: 560.972 0.043 +44: Performance: 534.320 0.045 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_7_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_7_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_7_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/7 (56 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/7 (18 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/8 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_8_input.mdp]: @@ -79933,9 +79966,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.033 0.017 198.8 +44: Time: 0.009 0.004 196.3 44: (ns/day) (hour/ns) -44: Performance: 88.983 0.270 +44: Performance: 328.460 0.073 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -79957,9 +79990,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.006 0.003 193.2 +44: Time: 0.005 0.003 194.1 44: (ns/day) (hour/ns) -44: Performance: 253.280 0.095 +44: Performance: 288.118 0.083 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -79981,13 +80014,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.030 0.015 198.2 +44: Time: 0.005 0.003 187.0 44: (ns/day) (hour/ns) -44: Performance: 51.689 0.464 +44: Performance: 281.697 0.085 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_8_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_8_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_8_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/8 (180 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/8 (62 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/9 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_9_input.mdp]: @@ -80110,9 +80143,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.034 0.017 198.9 +44: Time: 0.009 0.005 196.4 44: (ns/day) (hour/ns) -44: Performance: 87.015 0.276 +44: Performance: 309.438 0.078 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -80134,9 +80167,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.029 0.014 198.4 +44: Time: 0.006 0.003 194.2 44: (ns/day) (hour/ns) -44: Performance: 53.938 0.445 +44: Performance: 273.845 0.088 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -80158,13 +80191,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.044 0.022 199.0 +44: Time: 0.006 0.003 194.9 44: (ns/day) (hour/ns) -44: Performance: 35.010 0.686 +44: Performance: 267.818 0.090 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_9_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_9_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_9_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/9 (183 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/9 (64 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/10 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_10_input.mdp]: @@ -80278,9 +80311,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.055 0.028 199.2 +44: Time: 0.009 0.005 193.2 44: (ns/day) (hour/ns) -44: Performance: 53.172 0.451 +44: Performance: 324.669 0.074 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -80303,9 +80336,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.005 0.002 193.3 +44: Time: 0.005 0.003 186.5 44: (ns/day) (hour/ns) -44: Performance: 327.459 0.073 +44: Performance: 280.269 0.086 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -80328,13 +80361,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.005 0.002 193.7 +44: Time: 0.007 0.003 195.1 44: (ns/day) (hour/ns) -44: Performance: 317.173 0.076 +44: Performance: 224.019 0.107 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_10_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_10_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_10_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/10 (331 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/10 (94 ms) 44: [ RUN ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/11 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_11_input.mdp]: @@ -80448,9 +80481,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.026 0.013 198.6 +44: Time: 0.011 0.005 196.8 44: (ns/day) (hour/ns) -44: Performance: 113.388 0.212 +44: Performance: 274.965 0.087 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -80473,9 +80506,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.006 0.003 194.6 +44: Time: 0.007 0.004 195.4 44: (ns/day) (hour/ns) -44: Performance: 261.296 0.092 +44: Performance: 209.392 0.115 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -80498,14 +80531,14 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.038 0.019 199.0 +44: Time: 0.007 0.004 196.0 44: (ns/day) (hour/ns) -44: Performance: 40.582 0.591 +44: Performance: 214.023 0.112 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_11_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_11_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegrators_MdrunNoAppendContinuationIsExact_WithinTolerances_11_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/11 (219 ms) -44: [----------] 12 tests from NormalIntegrators/MdrunNoAppendContinuationIsExact (1338 ms total) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegrators/MdrunNoAppendContinuationIsExact.WithinTolerances/11 (90 ms) +44: [----------] 12 tests from NormalIntegrators/MdrunNoAppendContinuationIsExact (457 ms total) 44: 44: [----------] 4 tests from NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact 44: [ RUN ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/0 @@ -80602,9 +80635,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.034 0.017 198.4 +44: Time: 0.008 0.004 196.0 44: (ns/day) (hour/ns) -44: Performance: 85.402 0.281 +44: Performance: 349.062 0.069 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -80626,9 +80659,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.022 0.011 198.1 +44: Time: 0.005 0.003 194.1 44: (ns/day) (hour/ns) -44: Performance: 71.599 0.335 +44: Performance: 298.071 0.081 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -80650,13 +80683,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.005 0.003 192.3 +44: Time: 0.005 0.003 194.0 44: (ns/day) (hour/ns) -44: Performance: 295.612 0.081 +44: Performance: 285.445 0.084 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_0_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_0_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_0_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (168 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (59 ms) 44: [ RUN ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/1 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_1_input.mdp]: @@ -80751,9 +80784,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.031 0.015 199.3 +44: Time: 0.009 0.005 197.9 44: (ns/day) (hour/ns) -44: Performance: 95.525 0.251 +44: Performance: 311.503 0.077 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -80775,9 +80808,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.005 0.003 196.9 +44: Time: 0.006 0.003 197.0 44: (ns/day) (hour/ns) -44: Performance: 281.018 0.085 +44: Performance: 274.144 0.088 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -80798,17 +80831,14 @@ 44: 44: Writing final coordinates. 44: -44: NOTE: 53 % of the run time was spent in pair search, -44: you might want to increase nstlist (this has no effect on accuracy) -44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.045 0.023 199.5 +44: Time: 0.006 0.003 197.2 44: (ns/day) (hour/ns) -44: Performance: 34.185 0.702 +44: Performance: 264.046 0.091 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_1_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_1_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_1_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (178 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (59 ms) 44: [ RUN ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/2 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_2_input.mdp]: @@ -80894,9 +80924,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.025 0.012 198.2 +44: Time: 0.009 0.004 195.8 44: (ns/day) (hour/ns) -44: Performance: 118.843 0.202 +44: Performance: 337.789 0.071 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -80919,9 +80949,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.013 0.007 197.3 +44: Time: 0.005 0.003 193.9 44: (ns/day) (hour/ns) -44: Performance: 119.115 0.201 +44: Performance: 279.644 0.086 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -80944,13 +80974,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.013 0.007 197.1 +44: Time: 0.005 0.003 193.8 44: (ns/day) (hour/ns) -44: Performance: 118.608 0.202 +44: Performance: 287.204 0.084 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_2_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_2_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_2_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (201 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (95 ms) 44: [ RUN ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/3 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_3_input.mdp]: @@ -81036,9 +81066,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.017 0.009 197.6 +44: Time: 0.009 0.005 196.3 44: (ns/day) (hour/ns) -44: Performance: 172.016 0.140 +44: Performance: 306.208 0.078 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -81061,9 +81091,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.005 0.002 193.1 +44: Time: 0.006 0.003 194.1 44: (ns/day) (hour/ns) -44: Performance: 314.633 0.076 +44: Performance: 270.551 0.089 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -81086,14 +81116,14 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.029 0.015 198.8 +44: Time: 0.006 0.003 193.7 44: (ns/day) (hour/ns) -44: Performance: 52.555 0.457 +44: Performance: 255.283 0.094 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_3_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_3_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalIntegratorsWithFEP_MdrunNoAppendContinuationIsExact_WithinTolerances_3_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (193 ms) -44: [----------] 4 tests from NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact (740 ms total) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (82 ms) +44: [----------] 4 tests from NormalIntegratorsWithFEP/MdrunNoAppendContinuationIsExact (295 ms total) 44: 44: [----------] 6 tests from NVT/MdrunNoAppendContinuationIsExact 44: [ RUN ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/0 @@ -81169,9 +81199,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.002 192.5 +44: Time: 0.003 0.002 194.2 44: (ns/day) (hour/ns) -44: Performance: 957.655 0.025 +44: Performance: 901.858 0.027 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -81194,9 +81224,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 192.0 +44: Time: 0.002 0.001 193.2 44: (ns/day) (hour/ns) -44: Performance: 633.668 0.038 +44: Performance: 651.516 0.037 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -81219,13 +81249,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 191.2 +44: Time: 0.002 0.001 192.9 44: (ns/day) (hour/ns) -44: Performance: 749.940 0.032 +44: Performance: 666.563 0.036 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_0_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_0_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_0_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (41 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (16 ms) 44: [ RUN ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/1 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_1_input.mdp]: @@ -81289,9 +81319,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.002 193.4 +44: Time: 0.003 0.002 194.2 44: (ns/day) (hour/ns) -44: Performance: 886.416 0.027 +44: Performance: 919.492 0.026 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -81314,9 +81344,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.001 192.3 +44: Time: 0.002 0.001 193.0 44: (ns/day) (hour/ns) -44: Performance: 547.322 0.044 +44: Performance: 675.117 0.036 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -81338,17 +81368,14 @@ 44: 44: Writing final coordinates. 44: -44: NOTE: 86 % of the run time was spent in pair search, -44: you might want to increase nstlist (this has no effect on accuracy) -44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.019 0.009 198.4 +44: Time: 0.002 0.001 193.3 44: (ns/day) (hour/ns) -44: Performance: 82.195 0.292 +44: Performance: 654.786 0.037 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_1_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_1_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_1_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (42 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (16 ms) 44: [ RUN ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/2 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_2_input.mdp]: @@ -81420,9 +81447,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.002 192.6 +44: Time: 0.003 0.002 194.2 44: (ns/day) (hour/ns) -44: Performance: 848.333 0.028 +44: Performance: 887.438 0.027 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -81445,9 +81472,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 191.2 +44: Time: 0.002 0.001 192.9 44: (ns/day) (hour/ns) -44: Performance: 667.518 0.036 +44: Performance: 684.468 0.035 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -81470,13 +81497,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.025 0.013 198.7 +44: Time: 0.002 0.001 193.2 44: (ns/day) (hour/ns) -44: Performance: 61.377 0.391 +44: Performance: 672.611 0.036 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_2_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_2_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_2_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (62 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (16 ms) 44: [ RUN ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/3 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_3_input.mdp]: @@ -81550,9 +81577,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.002 193.5 +44: Time: 0.003 0.002 194.9 44: (ns/day) (hour/ns) -44: Performance: 973.699 0.025 +44: Performance: 891.677 0.027 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -81575,9 +81602,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.001 192.7 +44: Time: 0.002 0.001 192.7 44: (ns/day) (hour/ns) -44: Performance: 524.187 0.046 +44: Performance: 707.328 0.034 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -81600,13 +81627,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.018 0.009 198.9 +44: Time: 0.002 0.001 192.4 44: (ns/day) (hour/ns) -44: Performance: 84.057 0.286 +44: Performance: 657.559 0.036 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_3_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_3_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_3_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (65 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (16 ms) 44: [ RUN ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/4 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_4_input.mdp]: @@ -81670,9 +81697,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.028 0.014 199.4 +44: Time: 0.006 0.003 197.5 44: (ns/day) (hour/ns) -44: Performance: 105.437 0.228 +44: Performance: 478.158 0.050 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -81695,9 +81722,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.002 196.8 +44: Time: 0.003 0.001 196.3 44: (ns/day) (hour/ns) -44: Performance: 467.597 0.051 +44: Performance: 556.758 0.043 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -81720,13 +81747,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.019 0.009 198.8 +44: Time: 0.003 0.001 196.7 44: (ns/day) (hour/ns) -44: Performance: 81.863 0.293 +44: Performance: 580.750 0.041 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_4_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_4_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_4_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/4 (47 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/4 (18 ms) 44: [ RUN ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/5 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_5_input.mdp]: @@ -81790,9 +81817,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.019 0.010 198.3 +44: Time: 0.004 0.002 195.6 44: (ns/day) (hour/ns) -44: Performance: 151.010 0.159 +44: Performance: 672.480 0.036 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -81815,9 +81842,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 192.7 +44: Time: 0.003 0.001 193.2 44: (ns/day) (hour/ns) -44: Performance: 625.406 0.038 +44: Performance: 518.602 0.046 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -81840,14 +81867,14 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.001 192.8 +44: Time: 0.003 0.001 193.6 44: (ns/day) (hour/ns) -44: Performance: 558.283 0.043 +44: Performance: 574.915 0.042 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_5_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_5_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NVT_MdrunNoAppendContinuationIsExact_WithinTolerances_5_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/5 (42 ms) -44: [----------] 6 tests from NVT/MdrunNoAppendContinuationIsExact (300 ms total) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NVT/MdrunNoAppendContinuationIsExact.WithinTolerances/5 (18 ms) +44: [----------] 6 tests from NVT/MdrunNoAppendContinuationIsExact (100 ms total) 44: 44: [----------] 4 tests from NPH/MdrunNoAppendContinuationIsExact 44: [ RUN ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/0 @@ -81922,9 +81949,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.002 193.2 +44: Time: 0.004 0.002 194.3 44: (ns/day) (hour/ns) -44: Performance: 865.738 0.028 +44: Performance: 784.889 0.031 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -81946,9 +81973,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.019 0.009 198.7 +44: Time: 0.002 0.001 192.1 44: (ns/day) (hour/ns) -44: Performance: 83.282 0.288 +44: Performance: 618.996 0.039 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -81970,13 +81997,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.026 0.013 198.8 +44: Time: 0.003 0.002 193.9 44: (ns/day) (hour/ns) -44: Performance: 59.404 0.404 +44: Performance: 500.843 0.048 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_0_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_0_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_0_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (53 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (17 ms) 44: [ RUN ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/1 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_1_input.mdp]: @@ -82049,9 +82076,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.002 193.1 +44: Time: 0.003 0.002 193.6 44: (ns/day) (hour/ns) -44: Performance: 955.575 0.025 +44: Performance: 840.348 0.029 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -82073,9 +82100,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 190.5 +44: Time: 0.002 0.001 191.6 44: (ns/day) (hour/ns) -44: Performance: 662.635 0.036 +44: Performance: 638.132 0.038 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -82097,13 +82124,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 190.8 +44: Time: 0.002 0.001 191.8 44: (ns/day) (hour/ns) -44: Performance: 593.754 0.040 +44: Performance: 636.761 0.038 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_1_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_1_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_1_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (35 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (17 ms) 44: [ RUN ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/2 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_2_input.mdp]: @@ -82176,9 +82203,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.002 193.2 +44: Time: 0.003 0.002 194.5 44: (ns/day) (hour/ns) -44: Performance: 881.218 0.027 +44: Performance: 836.696 0.029 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -82200,9 +82227,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.027 0.013 199.0 +44: Time: 0.002 0.001 192.3 44: (ns/day) (hour/ns) -44: Performance: 57.615 0.417 +44: Performance: 645.456 0.037 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -82224,13 +82251,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.043 0.022 199.2 +44: Time: 0.002 0.001 191.8 44: (ns/day) (hour/ns) -44: Performance: 35.995 0.667 +44: Performance: 645.712 0.037 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_2_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_2_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_2_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (58 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (16 ms) 44: [ RUN ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/3 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_3_input.mdp]: @@ -82303,9 +82330,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.004 0.002 196.7 +44: Time: 0.004 0.002 197.1 44: (ns/day) (hour/ns) -44: Performance: 776.774 0.031 +44: Performance: 751.567 0.032 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -82327,9 +82354,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.027 0.014 199.5 +44: Time: 0.002 0.001 196.5 44: (ns/day) (hour/ns) -44: Performance: 56.613 0.424 +44: Performance: 613.293 0.039 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -82351,14 +82378,14 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.028 0.014 199.4 +44: Time: 0.003 0.001 196.6 44: (ns/day) (hour/ns) -44: Performance: 55.961 0.429 +44: Performance: 584.182 0.041 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_3_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_3_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPH_MdrunNoAppendContinuationIsExact_WithinTolerances_3_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (57 ms) -44: [----------] 4 tests from NPH/MdrunNoAppendContinuationIsExact (203 ms total) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPH/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (16 ms) +44: [----------] 4 tests from NPH/MdrunNoAppendContinuationIsExact (66 ms total) 44: 44: [----------] 12 tests from NPT/MdrunNoAppendContinuationIsExact 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/0 @@ -82434,9 +82461,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.002 192.7 +44: Time: 0.003 0.002 194.3 44: (ns/day) (hour/ns) -44: Performance: 977.717 0.025 +44: Performance: 849.269 0.028 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -82459,9 +82486,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.027 0.013 199.1 +44: Time: 0.002 0.001 191.9 44: (ns/day) (hour/ns) -44: Performance: 58.180 0.413 +44: Performance: 713.518 0.034 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -82484,13 +82511,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 189.9 +44: Time: 0.002 0.001 192.2 44: (ns/day) (hour/ns) -44: Performance: 669.161 0.036 +44: Performance: 678.629 0.035 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_0_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_0_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_0_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (46 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (16 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/1 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_1_input.mdp]: @@ -82564,9 +82591,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.002 191.4 +44: Time: 0.003 0.002 193.8 44: (ns/day) (hour/ns) -44: Performance: 967.582 0.025 +44: Performance: 964.250 0.025 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -82589,9 +82616,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.027 0.014 198.8 +44: Time: 0.002 0.001 191.8 44: (ns/day) (hour/ns) -44: Performance: 57.198 0.420 +44: Performance: 714.769 0.034 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -82614,13 +82641,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.026 0.013 198.8 +44: Time: 0.002 0.001 192.1 44: (ns/day) (hour/ns) -44: Performance: 60.615 0.396 +44: Performance: 693.197 0.035 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_1_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_1_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_1_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (56 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/1 (16 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/2 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_2_input.mdp]: @@ -82684,9 +82711,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.002 192.8 +44: Time: 0.003 0.002 194.1 44: (ns/day) (hour/ns) -44: Performance: 886.927 0.027 +44: Performance: 941.843 0.025 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -82709,9 +82736,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 191.0 +44: Time: 0.002 0.001 191.6 44: (ns/day) (hour/ns) -44: Performance: 615.608 0.039 +44: Performance: 721.250 0.033 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -82734,13 +82761,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.025 0.013 199.0 +44: Time: 0.003 0.001 193.9 44: (ns/day) (hour/ns) -44: Performance: 61.262 0.392 +44: Performance: 530.237 0.045 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_2_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_2_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_2_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (48 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/2 (15 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/3 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_3_input.mdp]: @@ -82804,9 +82831,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.002 193.0 +44: Time: 0.003 0.002 194.1 44: (ns/day) (hour/ns) -44: Performance: 974.469 0.025 +44: Performance: 964.250 0.025 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -82829,9 +82856,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.001 192.0 +44: Time: 0.002 0.001 191.8 44: (ns/day) (hour/ns) -44: Performance: 530.151 0.045 +44: Performance: 719.976 0.033 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -82854,13 +82881,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.027 0.014 199.0 +44: Time: 0.002 0.001 192.2 44: (ns/day) (hour/ns) -44: Performance: 57.120 0.420 +44: Performance: 691.580 0.035 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_3_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_3_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_3_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (50 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/3 (15 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/4 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_4_input.mdp]: @@ -82945,13 +82972,10 @@ 44: 44: Writing final coordinates. 44: -44: NOTE: 58 % of the run time was spent in pair search, -44: you might want to increase nstlist (this has no effect on accuracy) -44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.028 0.014 198.9 +44: Time: 0.003 0.002 194.2 44: (ns/day) (hour/ns) -44: Performance: 104.674 0.229 +44: Performance: 921.693 0.026 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -82974,9 +82998,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.002 190.9 +44: Time: 0.002 0.001 191.8 44: (ns/day) (hour/ns) -44: Performance: 478.014 0.050 +44: Performance: 718.074 0.033 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -82999,13 +83023,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.027 0.014 199.0 +44: Time: 0.002 0.001 191.6 44: (ns/day) (hour/ns) -44: Performance: 57.128 0.420 +44: Performance: 705.950 0.034 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_4_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_4_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_4_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/4 (64 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/4 (15 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/5 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_5_input.mdp]: @@ -83077,9 +83101,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.004 0.002 192.8 +44: Time: 0.003 0.002 193.5 44: (ns/day) (hour/ns) -44: Performance: 795.531 0.030 +44: Performance: 954.983 0.025 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -83101,13 +83125,10 @@ 44: 44: Writing final coordinates. 44: -44: NOTE: 89 % of the run time was spent in pair search, -44: you might want to increase nstlist (this has no effect on accuracy) -44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.027 0.014 199.0 +44: Time: 0.002 0.001 192.3 44: (ns/day) (hour/ns) -44: Performance: 57.076 0.420 +44: Performance: 678.347 0.035 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -83130,13 +83151,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.027 0.014 198.9 +44: Time: 0.002 0.001 191.8 44: (ns/day) (hour/ns) -44: Performance: 57.056 0.421 +44: Performance: 673.723 0.036 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_5_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_5_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_5_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/5 (64 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/5 (15 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/6 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_6_input.mdp]: @@ -83209,13 +83230,10 @@ 44: 44: Writing final coordinates. 44: -44: NOTE: 86 % of the run time was spent in pair search, -44: you might want to increase nstlist (this has no effect on accuracy) -44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.028 0.014 199.1 +44: Time: 0.004 0.002 194.4 44: (ns/day) (hour/ns) -44: Performance: 104.479 0.230 +44: Performance: 744.033 0.032 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -83238,9 +83256,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.002 191.7 +44: Time: 0.003 0.001 193.2 44: (ns/day) (hour/ns) -44: Performance: 517.697 0.046 +44: Performance: 547.506 0.044 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -83263,13 +83281,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.027 0.014 199.0 +44: Time: 0.002 0.001 192.8 44: (ns/day) (hour/ns) -44: Performance: 57.286 0.419 +44: Performance: 618.527 0.039 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_6_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_6_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_6_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/6 (63 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/6 (20 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/7 44: [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/7 (0 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/8 @@ -83335,9 +83353,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.028 0.014 198.9 +44: Time: 0.003 0.002 194.3 44: (ns/day) (hour/ns) -44: Performance: 104.569 0.230 +44: Performance: 847.633 0.028 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -83360,9 +83378,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.027 0.014 198.8 +44: Time: 0.002 0.001 192.1 44: (ns/day) (hour/ns) -44: Performance: 56.670 0.424 +44: Performance: 627.934 0.038 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -83385,13 +83403,13 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.027 0.014 199.1 +44: Time: 0.002 0.001 192.8 44: (ns/day) (hour/ns) -44: Performance: 57.051 0.421 +44: Performance: 630.605 0.038 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_8_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_8_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_8_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/8 (65 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/8 (16 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/9 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_9_input.mdp]: @@ -83455,9 +83473,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.028 0.014 199.5 +44: Time: 0.004 0.002 197.0 44: (ns/day) (hour/ns) -44: Performance: 105.214 0.228 +44: Performance: 786.794 0.031 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -83480,9 +83498,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.026 0.013 199.3 +44: Time: 0.003 0.001 195.8 44: (ns/day) (hour/ns) -44: Performance: 58.699 0.409 +44: Performance: 585.021 0.041 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -83505,18 +83523,18 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.001 196.7 +44: Time: 0.003 0.001 196.5 44: (ns/day) (hour/ns) -44: Performance: 567.117 0.042 +44: Performance: 583.555 0.041 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_9_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_9_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NPT_MdrunNoAppendContinuationIsExact_WithinTolerances_9_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/9 (54 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/9 (17 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/10 44: [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/10 (0 ms) 44: [ RUN ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/11 44: [ OK ] NPT/MdrunNoAppendContinuationIsExact.WithinTolerances/11 (0 ms) -44: [----------] 12 tests from NPT/MdrunNoAppendContinuationIsExact (510 ms total) +44: [----------] 12 tests from NPT/MdrunNoAppendContinuationIsExact (146 ms total) 44: 44: [----------] 1 test from MTTK/MdrunNoAppendContinuationIsExact 44: [ RUN ] MTTK/MdrunNoAppendContinuationIsExact.WithinTolerances/0 @@ -83582,9 +83600,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.004 0.002 193.5 +44: Time: 0.004 0.002 195.1 44: (ns/day) (hour/ns) -44: Performance: 743.225 0.032 +44: Performance: 737.089 0.033 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -83607,9 +83625,9 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.002 192.7 +44: Time: 0.003 0.002 192.4 44: (ns/day) (hour/ns) -44: Performance: 472.817 0.051 +44: Performance: 514.187 0.047 44: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 44: log). 44: The current CPU can measure timings more accurately than the code in @@ -83632,18 +83650,18 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.003 0.002 192.5 +44: Time: 0.003 0.001 190.4 44: (ns/day) (hour/ns) -44: Performance: 465.462 0.052 +44: Performance: 552.701 0.043 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MTTK_MdrunNoAppendContinuationIsExact_WithinTolerances_0_secondpart.part0002.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MTTK_MdrunNoAppendContinuationIsExact_WithinTolerances_0_firstpart.edr as double precision energy file 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MTTK_MdrunNoAppendContinuationIsExact_WithinTolerances_0_full.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] MTTK/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (66 ms) -44: [----------] 1 test from MTTK/MdrunNoAppendContinuationIsExact (66 ms total) +44: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Last energy frame read 2 time 0.008 Reading energy frame 0 time 0.008 Reading energy frame 1 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 2 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 2 time 0.016 [ OK ] MTTK/MdrunNoAppendContinuationIsExact.WithinTolerances/0 (16 ms) +44: [----------] 1 test from MTTK/MdrunNoAppendContinuationIsExact (16 ms total) 44: 44: [----------] 3 tests from Checking/InitialConstraintsTest 44: [ RUN ] Checking/InitialConstraintsTest.Works/0 -44: Setting the LD random seed to -1649150087 +44: Setting the LD random seed to -4292711 44: Generated 8 of the 10 non-bonded parameter combinations 44: Excluding 2 bonded neighbours molecule type 'Methanol' 44: Excluding 2 bonded neighbours molecule type 'SOL' @@ -83688,17 +83706,14 @@ 44: 44: Writing final coordinates. 44: -44: NOTE: 77 % of the run time was spent in pair search, -44: you might want to increase nstlist (this has no effect on accuracy) -44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.008 0.004 196.7 +44: Time: 0.004 0.002 193.7 44: (ns/day) (hour/ns) -44: Performance: 41.575 0.577 +44: Performance: 94.029 0.255 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_0_spc-and-methanol.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/0 (19 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/0 (8 ms) 44: [ RUN ] Checking/InitialConstraintsTest.Works/1 -44: Setting the LD random seed to 1833949149 +44: Setting the LD random seed to -1610621185 44: Generated 8 of the 10 non-bonded parameter combinations 44: Excluding 2 bonded neighbours molecule type 'Methanol' 44: Excluding 2 bonded neighbours molecule type 'SOL' @@ -83744,18 +83759,18 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.026 0.013 199.2 +44: Time: 0.002 0.001 194.1 44: (ns/day) (hour/ns) -44: Performance: 13.071 1.836 +44: Performance: 146.894 0.163 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_1_spc-and-methanol.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/1 (23 ms) +44: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/1 (7 ms) 44: [ RUN ] Checking/InitialConstraintsTest.Works/2 44: 44: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2_input.mdp]: 44: Integrator method md-vv-avek is implemented primarily for validation 44: purposes; for molecular dynamics, you should probably be using md or md-vv 44: -44: Setting the LD random seed to -277611189 +44: Setting the LD random seed to -10628097 44: Generated 8 of the 10 non-bonded parameter combinations 44: Excluding 2 bonded neighbours molecule type 'Methanol' 44: Excluding 2 bonded neighbours molecule type 'SOL' @@ -83801,17 +83816,17 @@ 44: Writing final coordinates. 44: 44: Core t (s) Wall t (s) (%) -44: Time: 0.002 0.001 187.8 +44: Time: 0.002 0.001 190.1 44: (ns/day) (hour/ns) -44: Performance: 171.342 0.140 +44: Performance: 149.593 0.160 44: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2_spc-and-methanol.edr as double precision energy file -44: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/2 (17 ms) -44: [----------] 3 tests from Checking/InitialConstraintsTest (59 ms total) +44: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/2 (7 ms) +44: [----------] 3 tests from Checking/InitialConstraintsTest (22 ms total) 44: 44: [----------] Global test environment tear-down -44: [==========] 51 tests from 9 test cases ran. (3706 ms total) +44: [==========] 51 tests from 9 test cases ran. (1267 ms total) 44: [ PASSED ] 51 tests. -44/54 Test #44: MdrunIOTests ........................ Passed 3.77 sec +44/54 Test #44: MdrunIOTests ........................ Passed 1.29 sec test 45 Start 45: MdrunTests @@ -83826,7 +83841,7 @@ 45: The Berendsen thermostat does not generate the correct kinetic energy 45: distribution. You might want to consider using the V-rescale thermostat. 45: -45: Setting the LD random seed to -402817052 +45: Setting the LD random seed to -558333953 45: Generated 2145 of the 2145 non-bonded parameter combinations 45: Generating 1-4 interactions: fudge = 0.5 45: Generated 2145 of the 2145 1-4 parameter combinations @@ -83879,11 +83894,11 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.128 0.064 199.7 +45: Time: 0.037 0.019 199.2 45: (ns/day) (hour/ns) -45: Performance: 542.820 0.044 -45: [ OK ] DispersionCorrectionTest.DispersionCorrectionCanRun (335 ms) -45: [----------] 1 test from DispersionCorrectionTest (335 ms total) +45: Performance: 1852.256 0.013 +45: [ OK ] DispersionCorrectionTest.DispersionCorrectionCanRun (121 ms) +45: [----------] 1 test from DispersionCorrectionTest (121 ms total) 45: 45: [----------] 1 test from OriresTest 45: [ RUN ] OriresTest.OriresCanRun @@ -83892,7 +83907,7 @@ 45: The Berendsen thermostat does not generate the correct kinetic energy 45: distribution. You might want to consider using the V-rescale thermostat. 45: -45: Setting the LD random seed to -85115393 +45: Setting the LD random seed to -808456738 45: Generated 2145 of the 2145 non-bonded parameter combinations 45: Generating 1-4 interactions: fudge = 0.5 45: Generated 2145 of the 2145 1-4 parameter combinations @@ -83938,15 +83953,15 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.019 0.009 198.0 +45: Time: 0.011 0.006 197.1 45: (ns/day) (hour/ns) -45: Performance: 201.078 0.119 -45: [ OK ] OriresTest.OriresCanRun (555 ms) -45: [----------] 1 test from OriresTest (555 ms total) +45: Performance: 342.772 0.070 +45: [ OK ] OriresTest.OriresCanRun (253 ms) +45: [----------] 1 test from OriresTest (253 ms total) 45: 45: [----------] 3 tests from PmeTest 45: [ RUN ] PmeTest.ReproducesEnergies -45: Setting the LD random seed to -286265422 +45: Setting the LD random seed to -1351132298 45: Generated 8 of the 10 non-bonded parameter combinations 45: Excluding 2 bonded neighbours molecule type 'Methanol' 45: Excluding 2 bonded neighbours molecule type 'SOL' @@ -83994,9 +84009,9 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.112 0.056 199.7 +45: Time: 0.031 0.015 199.0 45: (ns/day) (hour/ns) -45: Performance: 32.494 0.739 +45: Performance: 117.321 0.205 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeAuto.edr as double precision energy file 45: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 45: log). @@ -84019,9 +84034,9 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.065 0.032 199.5 +45: Time: 0.029 0.015 198.9 45: (ns/day) (hour/ns) -45: Performance: 56.050 0.428 +45: Performance: 123.321 0.195 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeOnCpu.edr as double precision energy file 45: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 45: log). @@ -84044,18 +84059,18 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.064 0.032 199.5 +45: Time: 0.029 0.015 199.0 45: (ns/day) (hour/ns) -45: Performance: 56.645 0.424 +45: Performance: 122.996 0.195 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeOnCpuTune.edr as double precision energy file -45: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 [ OK ] PmeTest.ReproducesEnergies (468 ms) +45: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 [ OK ] PmeTest.ReproducesEnergies (201 ms) 45: [ RUN ] PmeTest.ScalesTheBox 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBox_input.mdp]: 45: For a correct single-point energy evaluation with nsteps = 0, use 45: continuation = yes to avoid constraining the input coordinates. 45: -45: Setting the LD random seed to -1493205521 +45: Setting the LD random seed to -2298721 45: Generated 8 of the 10 non-bonded parameter combinations 45: Excluding 2 bonded neighbours molecule type 'Methanol' 45: Excluding 2 bonded neighbours molecule type 'SOL' @@ -84094,9 +84109,9 @@ 45: 0 steps, 0.0 ps. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.002 0.001 186.3 +45: Time: 0.002 0.001 188.7 45: (ns/day) (hour/ns) -45: Performance: 89.104 0.269 +45: Performance: 81.988 0.293 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBox_spc-and-methanol_PmeOnCpu.edr as double precision energy file 45: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 1046.79 K 45: Calculated rlist for 1x1 atom pair-list as 1.000 nm, buffer size 0.000 nm @@ -84105,14 +84120,14 @@ 45: Calculating fourier grid dimensions for X Y Z 45: Using a fourier grid of 28x28x28, spacing 0.107 0.107 0.107 45: This run will generate roughly 0 Mb of data -45: [ OK ] PmeTest.ScalesTheBox (36 ms) +45: [ OK ] PmeTest.ScalesTheBox (12 ms) 45: [ RUN ] PmeTest.ScalesTheBoxWithWalls 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBoxWithWalls_input.mdp]: 45: For a correct single-point energy evaluation with nsteps = 0, use 45: continuation = yes to avoid constraining the input coordinates. 45: -45: Setting the LD random seed to 2139090109 +45: Setting the LD random seed to -272919110 45: Generated 8 of the 10 non-bonded parameter combinations 45: Excluding 2 bonded neighbours molecule type 'Methanol' 45: Excluding 2 bonded neighbours molecule type 'SOL' @@ -84152,9 +84167,9 @@ 45: 0 steps, 0.0 ps. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.006 0.003 193.5 +45: Time: 0.007 0.004 193.5 45: (ns/day) (hour/ns) -45: Performance: 26.398 0.909 +45: Performance: 22.996 1.044 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBoxWithWalls_spc-and-methanol_PmeOnCpu.edr as double precision energy file 45: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 966.268 K 45: Calculated rlist for 1x1 atom pair-list as 1.000 nm, buffer size 0.000 nm @@ -84163,8 +84178,8 @@ 45: Calculating fourier grid dimensions for X Y Z 45: Using a fourier grid of 28x28x128, spacing 0.107 0.107 0.118 45: This run will generate roughly 0 Mb of data -45: [ OK ] PmeTest.ScalesTheBoxWithWalls (749 ms) -45: [----------] 3 tests from PmeTest (1253 ms total) +45: [ OK ] PmeTest.ScalesTheBoxWithWalls (472 ms) +45: [----------] 3 tests from PmeTest (685 ms total) 45: 45: [----------] 1 test from CompelTest 45: [ RUN ] CompelTest.SwapCanRun @@ -84173,7 +84188,7 @@ 45: The Berendsen thermostat does not generate the correct kinetic energy 45: distribution. You might want to consider using the V-rescale thermostat. 45: -45: Setting the LD random seed to -536921365 +45: Setting the LD random seed to -485097545 45: Generated 330891 of the 330891 non-bonded parameter combinations 45: Generating 1-4 interactions: fudge = 0.5 45: Generated 330891 of the 330891 1-4 parameter combinations @@ -84243,9 +84258,9 @@ 45: you might want to increase nstlist (this has no effect on accuracy) 45: 45: Core t (s) Wall t (s) (%) -45: Time: 1.137 0.568 200.0 +45: Time: 0.441 0.221 199.9 45: (ns/day) (hour/ns) -45: Performance: 2.280 10.527 +45: Performance: 5.875 4.085 45: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 45: log). 45: The current CPU can measure timings more accurately than the code in @@ -84272,15 +84287,15 @@ 45: 45: Writing final coordinates. 45: -45: NOTE: 24 % of the run time was spent in pair search, +45: NOTE: 23 % of the run time was spent in pair search, 45: you might want to increase nstlist (this has no effect on accuracy) 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.818 0.409 199.9 +45: Time: 0.320 0.160 199.8 45: (ns/day) (hour/ns) -45: Performance: 3.167 7.579 -45: [ OK ] CompelTest.SwapCanRun (2029 ms) -45: [----------] 1 test from CompelTest (2029 ms total) +45: Performance: 8.093 2.966 +45: [ OK ] CompelTest.SwapCanRun (1319 ms) +45: [----------] 1 test from CompelTest (1319 ms total) 45: 45: [----------] 6 tests from BondedInteractionsTest 45: [ RUN ] BondedInteractionsTest.NormalBondWorks @@ -84289,7 +84304,7 @@ 45: For a correct single-point energy evaluation with nsteps = 0, use 45: continuation = yes to avoid constraining the input coordinates. 45: -45: Setting the LD random seed to -234918473 +45: Setting the LD random seed to -606339090 45: Generated 3 of the 3 non-bonded parameter combinations 45: Excluding 3 bonded neighbours molecule type 'butane' 45: @@ -84329,22 +84344,22 @@ 45: Reading frames from gro file 'A single butane', 4 atoms. 45: Reading frame 0 time 0.000 Last frame 0 time 0.000 45: -45: NOTE: 18 % of the run time was spent in pair search, +45: NOTE: 22 % of the run time was spent in pair search, 45: you might want to increase nstlist (this has no effect on accuracy) 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.001 0.000 186.5 +45: Time: 0.001 0.000 188.5 45: (ns/day) (hour/ns) -45: Performance: 252.008 0.095 +45: Performance: 260.711 0.092 45: This run will generate roughly 0 Mb of data -45: [ OK ] BondedInteractionsTest.NormalBondWorks (47 ms) +45: [ OK ] BondedInteractionsTest.NormalBondWorks (6 ms) 45: [ RUN ] BondedInteractionsTest.TabulatedBondWorks 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedBondWorks_input.mdp]: 45: For a correct single-point energy evaluation with nsteps = 0, use 45: continuation = yes to avoid constraining the input coordinates. 45: -45: Setting the LD random seed to 1605877165 +45: Setting the LD random seed to 1870528511 45: Generated 3 of the 3 non-bonded parameter combinations 45: Excluding 3 bonded neighbours molecule type 'butane' 45: @@ -84388,18 +84403,18 @@ 45: you might want to increase nstlist (this has no effect on accuracy) 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.001 0.000 186.4 +45: Time: 0.001 0.000 187.1 45: (ns/day) (hour/ns) -45: Performance: 283.337 0.085 +45: Performance: 299.000 0.080 45: This run will generate roughly 0 Mb of data -45: [ OK ] BondedInteractionsTest.TabulatedBondWorks (16 ms) +45: [ OK ] BondedInteractionsTest.TabulatedBondWorks (7 ms) 45: [ RUN ] BondedInteractionsTest.NormalAngleWorks 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalAngleWorks_input.mdp]: 45: For a correct single-point energy evaluation with nsteps = 0, use 45: continuation = yes to avoid constraining the input coordinates. 45: -45: Setting the LD random seed to -1694507015 +45: Setting the LD random seed to -340133682 45: Generated 3 of the 3 non-bonded parameter combinations 45: Excluding 3 bonded neighbours molecule type 'butane' 45: @@ -84439,22 +84454,22 @@ 45: Reading frames from gro file 'A single butane', 4 atoms. 45: Reading frame 0 time 0.000 Last frame 0 time 0.000 45: -45: NOTE: 20 % of the run time was spent in pair search, +45: NOTE: 28 % of the run time was spent in pair search, 45: you might want to increase nstlist (this has no effect on accuracy) 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.000 0.000 185.4 +45: Time: 0.001 0.000 187.0 45: (ns/day) (hour/ns) -45: Performance: 334.615 0.072 +45: Performance: 247.533 0.097 45: This run will generate roughly 0 Mb of data -45: [ OK ] BondedInteractionsTest.NormalAngleWorks (7 ms) +45: [ OK ] BondedInteractionsTest.NormalAngleWorks (6 ms) 45: [ RUN ] BondedInteractionsTest.TabulatedAngleWorks 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedAngleWorks_input.mdp]: 45: For a correct single-point energy evaluation with nsteps = 0, use 45: continuation = yes to avoid constraining the input coordinates. 45: -45: Setting the LD random seed to -352387083 +45: Setting the LD random seed to -1678000697 45: Generated 3 of the 3 non-bonded parameter combinations 45: Excluding 3 bonded neighbours molecule type 'butane' 45: @@ -84494,22 +84509,22 @@ 45: Reading frames from gro file 'A single butane', 4 atoms. 45: Reading frame 0 time 0.000 Last frame 0 time 0.000 45: -45: NOTE: 20 % of the run time was spent in pair search, +45: NOTE: 21 % of the run time was spent in pair search, 45: you might want to increase nstlist (this has no effect on accuracy) 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.001 0.000 186.5 +45: Time: 0.001 0.000 175.3 45: (ns/day) (hour/ns) -45: Performance: 314.300 0.076 +45: Performance: 262.220 0.092 45: This run will generate roughly 0 Mb of data -45: [ OK ] BondedInteractionsTest.TabulatedAngleWorks (12 ms) +45: [ OK ] BondedInteractionsTest.TabulatedAngleWorks (7 ms) 45: [ RUN ] BondedInteractionsTest.NormalDihedralWorks 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalDihedralWorks_input.mdp]: 45: For a correct single-point energy evaluation with nsteps = 0, use 45: continuation = yes to avoid constraining the input coordinates. 45: -45: Setting the LD random seed to 1288962038 +45: Setting the LD random seed to -8781833 45: Generated 3 of the 3 non-bonded parameter combinations 45: Excluding 3 bonded neighbours molecule type 'butane' 45: @@ -84549,22 +84564,22 @@ 45: Reading frames from gro file 'A single butane', 4 atoms. 45: Reading frame 0 time 0.000 Last frame 0 time 0.000 45: -45: NOTE: 19 % of the run time was spent in pair search, +45: NOTE: 24 % of the run time was spent in pair search, 45: you might want to increase nstlist (this has no effect on accuracy) 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.001 0.000 184.9 +45: Time: 0.001 0.000 188.6 45: (ns/day) (hour/ns) -45: Performance: 296.553 0.081 +45: Performance: 284.003 0.085 45: This run will generate roughly 0 Mb of data -45: [ OK ] BondedInteractionsTest.NormalDihedralWorks (14 ms) +45: [ OK ] BondedInteractionsTest.NormalDihedralWorks (5 ms) 45: [ RUN ] BondedInteractionsTest.TabulatedDihedralWorks 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedDihedralWorks_input.mdp]: 45: For a correct single-point energy evaluation with nsteps = 0, use 45: continuation = yes to avoid constraining the input coordinates. 45: -45: Setting the LD random seed to -942735925 +45: Setting the LD random seed to -537155129 45: Generated 3 of the 3 non-bonded parameter combinations 45: Excluding 3 bonded neighbours molecule type 'butane' 45: @@ -84604,16 +84619,16 @@ 45: Reading frames from gro file 'A single butane', 4 atoms. 45: Reading frame 0 time 0.000 Last frame 0 time 0.000 45: -45: NOTE: 23 % of the run time was spent in pair search, +45: NOTE: 18 % of the run time was spent in pair search, 45: you might want to increase nstlist (this has no effect on accuracy) 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.001 0.000 187.1 +45: Time: 0.000 0.000 186.8 45: (ns/day) (hour/ns) -45: Performance: 315.120 0.076 +45: Performance: 351.833 0.068 45: This run will generate roughly 0 Mb of data -45: [ OK ] BondedInteractionsTest.TabulatedDihedralWorks (15 ms) -45: [----------] 6 tests from BondedInteractionsTest (111 ms total) +45: [ OK ] BondedInteractionsTest.TabulatedDihedralWorks (7 ms) +45: [----------] 6 tests from BondedInteractionsTest (38 ms total) 45: 45: [----------] 4 tests from SimulatorsAreEquivalentDefaultModular/SimulatorComparisonTest 45: [ RUN ] SimulatorsAreEquivalentDefaultModular/SimulatorComparisonTest.WithinTolerances/0 @@ -84663,9 +84678,9 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.019 0.010 199.1 +45: Time: 0.004 0.002 195.4 45: (ns/day) (hour/ns) -45: Performance: 151.199 0.159 +45: Performance: 794.300 0.030 45: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 45: log). 45: The current CPU can measure timings more accurately than the code in @@ -84687,15 +84702,15 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.007 0.004 197.2 +45: Time: 0.003 0.002 194.8 45: (ns/day) (hour/ns) -45: Performance: 389.788 0.062 +45: Performance: 903.578 0.027 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultModular_SimulatorComparisonTest_WithinTolerances_0_sim2.edr as double precision energy file 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultModular_SimulatorComparisonTest_WithinTolerances_0_sim1.edr as double precision energy file 45: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 trr version: GMX_trn_file (double precision) 45: 45: -45: [ OK ] SimulatorsAreEquivalentDefaultModular/SimulatorComparisonTest.WithinTolerances/0 (26 ms) +45: [ OK ] SimulatorsAreEquivalentDefaultModular/SimulatorComparisonTest.WithinTolerances/0 (12 ms) 45: [ RUN ] SimulatorsAreEquivalentDefaultModular/SimulatorComparisonTest.WithinTolerances/1 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultModular_SimulatorComparisonTest_WithinTolerances_1_input.mdp]: @@ -84739,9 +84754,9 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.003 0.002 196.7 +45: Time: 0.004 0.002 197.2 45: (ns/day) (hour/ns) -45: Performance: 949.829 0.025 +45: Performance: 803.102 0.030 45: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 45: log). 45: The current CPU can measure timings more accurately than the code in @@ -84764,14 +84779,14 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.003 0.002 192.9 +45: Time: 0.003 0.002 194.4 45: (ns/day) (hour/ns) -45: Performance: 916.891 0.026 +45: Performance: 918.806 0.026 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultModular_SimulatorComparisonTest_WithinTolerances_1_sim2.edr as double precision energy file 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultModular_SimulatorComparisonTest_WithinTolerances_1_sim1.edr as double precision energy file 45: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 45: -45: [ OK ] SimulatorsAreEquivalentDefaultModular/SimulatorComparisonTest.WithinTolerances/1 (27 ms) +45: [ OK ] SimulatorsAreEquivalentDefaultModular/SimulatorComparisonTest.WithinTolerances/1 (13 ms) 45: [ RUN ] SimulatorsAreEquivalentDefaultModular/SimulatorComparisonTest.WithinTolerances/2 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultModular_SimulatorComparisonTest_WithinTolerances_2_input.mdp]: @@ -84827,9 +84842,9 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.004 0.002 197.2 +45: Time: 0.005 0.002 197.1 45: (ns/day) (hour/ns) -45: Performance: 737.796 0.033 +45: Performance: 620.902 0.039 45: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 45: log). 45: The current CPU can measure timings more accurately than the code in @@ -84851,14 +84866,14 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.004 0.002 194.0 +45: Time: 0.004 0.002 195.4 45: (ns/day) (hour/ns) -45: Performance: 733.579 0.033 +45: Performance: 681.256 0.035 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultModular_SimulatorComparisonTest_WithinTolerances_2_sim2.edr as double precision energy file 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultModular_SimulatorComparisonTest_WithinTolerances_2_sim1.edr as double precision energy file 45: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 45: -45: [ OK ] SimulatorsAreEquivalentDefaultModular/SimulatorComparisonTest.WithinTolerances/2 (657 ms) +45: [ OK ] SimulatorsAreEquivalentDefaultModular/SimulatorComparisonTest.WithinTolerances/2 (716 ms) 45: [ RUN ] SimulatorsAreEquivalentDefaultModular/SimulatorComparisonTest.WithinTolerances/3 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultModular_SimulatorComparisonTest_WithinTolerances_3_input.mdp]: @@ -84910,9 +84925,9 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.004 0.002 196.6 +45: Time: 0.004 0.002 197.2 45: (ns/day) (hour/ns) -45: Performance: 719.864 0.033 +45: Performance: 694.778 0.035 45: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 45: log). 45: The current CPU can measure timings more accurately than the code in @@ -84935,15 +84950,15 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.008 0.004 196.5 +45: Time: 0.007 0.003 196.7 45: (ns/day) (hour/ns) -45: Performance: 340.045 0.071 +45: Performance: 444.167 0.054 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultModular_SimulatorComparisonTest_WithinTolerances_3_sim2.edr as double precision energy file 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultModular_SimulatorComparisonTest_WithinTolerances_3_sim1.edr as double precision energy file 45: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 45: -45: [ OK ] SimulatorsAreEquivalentDefaultModular/SimulatorComparisonTest.WithinTolerances/3 (832 ms) -45: [----------] 4 tests from SimulatorsAreEquivalentDefaultModular/SimulatorComparisonTest (1542 ms total) +45: [ OK ] SimulatorsAreEquivalentDefaultModular/SimulatorComparisonTest.WithinTolerances/3 (716 ms) +45: [----------] 4 tests from SimulatorsAreEquivalentDefaultModular/SimulatorComparisonTest (1457 ms total) 45: 45: [----------] 8 tests from SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest 45: [ RUN ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/0 @@ -84993,9 +85008,9 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.003 0.001 192.6 +45: Time: 0.003 0.001 194.2 45: (ns/day) (hour/ns) -45: Performance: 1062.171 0.023 +45: Performance: 990.608 0.024 45: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 45: log). 45: The current CPU can measure timings more accurately than the code in @@ -85017,14 +85032,14 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.010 0.005 198.9 +45: Time: 0.003 0.001 197.2 45: (ns/day) (hour/ns) -45: Performance: 287.905 0.083 +45: Performance: 989.813 0.024 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_0_sim2.edr as double precision energy file 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_0_sim1.edr as double precision energy file 45: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 45: -45: [ OK ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/0 (23 ms) +45: [ OK ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/0 (13 ms) 45: [ RUN ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/1 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_1_input.mdp]: @@ -85072,9 +85087,9 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.003 0.002 192.0 +45: Time: 0.005 0.003 196.3 45: (ns/day) (hour/ns) -45: Performance: 934.698 0.026 +45: Performance: 558.328 0.043 45: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 45: log). 45: The current CPU can measure timings more accurately than the code in @@ -85096,14 +85111,14 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.008 0.004 198.6 +45: Time: 0.004 0.002 197.8 45: (ns/day) (hour/ns) -45: Performance: 364.360 0.066 +45: Performance: 705.277 0.034 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_1_sim2.edr as double precision energy file 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_1_sim1.edr as double precision energy file 45: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 45: -45: [ OK ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/1 (21 ms) +45: [ OK ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/1 (13 ms) 45: [ RUN ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/2 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_2_input.mdp]: @@ -85147,9 +85162,9 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.003 0.002 192.1 +45: Time: 0.003 0.001 193.4 45: (ns/day) (hour/ns) -45: Performance: 939.831 0.026 +45: Performance: 1024.205 0.023 45: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 45: log). 45: The current CPU can measure timings more accurately than the code in @@ -85172,14 +85187,14 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.003 0.002 196.7 +45: Time: 0.003 0.002 197.3 45: (ns/day) (hour/ns) -45: Performance: 963.798 0.025 +45: Performance: 914.713 0.026 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_2_sim2.edr as double precision energy file 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_2_sim1.edr as double precision energy file 45: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 45: -45: [ OK ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/2 (16 ms) +45: [ OK ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/2 (12 ms) 45: [ RUN ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/3 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_3_input.mdp]: @@ -85222,10 +85237,13 @@ 45: 45: Writing final coordinates. 45: +45: NOTE: 15 % of the run time was spent in pair search, +45: you might want to increase nstlist (this has no effect on accuracy) +45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.003 0.001 191.5 +45: Time: 0.003 0.002 193.9 45: (ns/day) (hour/ns) -45: Performance: 1061.622 0.023 +45: Performance: 847.399 0.028 45: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 45: log). 45: The current CPU can measure timings more accurately than the code in @@ -85248,14 +85266,14 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.004 0.002 195.9 +45: Time: 0.003 0.002 196.9 45: (ns/day) (hour/ns) -45: Performance: 821.632 0.029 +45: Performance: 877.203 0.027 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_3_sim2.edr as double precision energy file 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_3_sim1.edr as double precision energy file 45: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 45: -45: [ OK ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/3 (17 ms) +45: [ OK ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/3 (12 ms) 45: [ RUN ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/4 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_4_input.mdp]: @@ -85311,9 +85329,9 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.003 0.002 192.8 +45: Time: 0.004 0.002 194.6 45: (ns/day) (hour/ns) -45: Performance: 894.655 0.027 +45: Performance: 808.265 0.030 45: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 45: log). 45: The current CPU can measure timings more accurately than the code in @@ -85335,14 +85353,14 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.003 0.002 197.4 +45: Time: 0.004 0.002 197.0 45: (ns/day) (hour/ns) -45: Performance: 882.733 0.027 +45: Performance: 812.958 0.030 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_4_sim2.edr as double precision energy file 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_4_sim1.edr as double precision energy file 45: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 45: -45: [ OK ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/4 (858 ms) +45: [ OK ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/4 (719 ms) 45: [ RUN ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/5 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_5_input.mdp]: @@ -85398,9 +85416,9 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.003 0.002 192.9 +45: Time: 0.004 0.002 194.5 45: (ns/day) (hour/ns) -45: Performance: 886.672 0.027 +45: Performance: 757.947 0.032 45: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 45: log). 45: The current CPU can measure timings more accurately than the code in @@ -85422,14 +85440,14 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.005 0.002 197.0 +45: Time: 0.004 0.002 197.3 45: (ns/day) (hour/ns) -45: Performance: 603.861 0.040 +45: Performance: 683.675 0.035 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_5_sim2.edr as double precision energy file 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_5_sim1.edr as double precision energy file 45: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 45: -45: [ OK ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/5 (1032 ms) +45: [ OK ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/5 (691 ms) 45: [ RUN ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/6 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_6_input.mdp]: @@ -85481,9 +85499,9 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.020 0.010 198.8 +45: Time: 0.004 0.002 191.2 45: (ns/day) (hour/ns) -45: Performance: 149.627 0.160 +45: Performance: 785.890 0.031 45: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 45: log). 45: The current CPU can measure timings more accurately than the code in @@ -85506,14 +85524,14 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.020 0.010 199.2 +45: Time: 0.003 0.002 197.2 45: (ns/day) (hour/ns) -45: Performance: 144.710 0.166 +45: Performance: 849.386 0.028 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_6_sim2.edr as double precision energy file 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_6_sim1.edr as double precision energy file 45: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 45: -45: [ OK ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/6 (1340 ms) +45: [ OK ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/6 (690 ms) 45: [ RUN ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/7 45: 45: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_7_input.mdp]: @@ -85565,9 +85583,9 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.003 0.002 191.7 +45: Time: 0.004 0.002 193.6 45: (ns/day) (hour/ns) -45: Performance: 825.485 0.029 +45: Performance: 774.820 0.031 45: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 45: log). 45: The current CPU can measure timings more accurately than the code in @@ -85590,20 +85608,20 @@ 45: Writing final coordinates. 45: 45: Core t (s) Wall t (s) (%) -45: Time: 0.004 0.002 196.5 +45: Time: 0.004 0.002 197.2 45: (ns/day) (hour/ns) -45: Performance: 659.169 0.036 +45: Performance: 793.686 0.030 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_7_sim2.edr as double precision energy file 45: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/SimulatorsAreEquivalentDefaultLegacy_SimulatorComparisonTest_WithinTolerances_7_sim1.edr as double precision energy file 45: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 45: -45: [ OK ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/7 (1353 ms) -45: [----------] 8 tests from SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest (4660 ms total) +45: [ OK ] SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest.WithinTolerances/7 (695 ms) +45: [----------] 8 tests from SimulatorsAreEquivalentDefaultLegacy/SimulatorComparisonTest (2845 ms total) 45: 45: [----------] Global test environment tear-down -45: [==========] 24 tests from 7 test cases ran. (10485 ms total) +45: [==========] 24 tests from 7 test cases ran. (6718 ms total) 45: [ PASSED ] 24 tests. -45/54 Test #45: MdrunTests .......................... Passed 10.54 sec +45/54 Test #45: MdrunTests .......................... Passed 6.74 sec test 46 Start 46: MdrunNonIntegratorTests @@ -85623,9 +85641,9 @@ 46: 46: Coulomb LJ comb. SIMD Mcycles Mcycles/it. pairs/cycle 46: total useful -46: Ewald all geom. 4xM 107.810 107.8099 0.0098 0.0058 -46: [ OK ] NonbondedBenchTest.BasicEndToEndTest (105 ms) -46: [----------] 1 test from NonbondedBenchTest (105 ms total) +46: Ewald all geom. 4xM 40.485 40.4846 0.0262 0.0156 +46: [ OK ] NonbondedBenchTest.BasicEndToEndTest (49 ms) +46: [----------] 1 test from NonbondedBenchTest (49 ms total) 46: 46: [----------] 6 tests from MinimizersWorkWithConstraints/EnergyMinimizationTest 46: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/0 @@ -85683,7 +85701,7 @@ 46: Norm of force = 8.77219865482122e+01 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_0_minimize.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/0 (1520 ms) +46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/0 (721 ms) 46: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_1_input.mdp]: @@ -85742,7 +85760,7 @@ 46: Norm of force = 1.84530029253846e+02 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_1_minimize.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 (1424 ms) +46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 (702 ms) 46: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_2_input.mdp]: @@ -85799,7 +85817,7 @@ 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_2_minimize.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 turning H bonds into constraints... 46: This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 (497 ms) +46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 (145 ms) 46: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_3_input.mdp]: @@ -85863,7 +85881,7 @@ 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_3_minimize.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 turning H bonds into constraints... 46: This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 (352 ms) +46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 (142 ms) 46: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_4_input.mdp]: @@ -85930,7 +85948,7 @@ 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_4_minimize.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 3.000 Last energy frame read 2 time 3.000 turning all bonds into constraints... 46: This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 (52 ms) +46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 (22 ms) 46: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_5_input.mdp]: @@ -86004,8 +86022,8 @@ 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_5_minimize.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 turning all bonds into constraints... 46: This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 (48 ms) -46: [----------] 6 tests from MinimizersWorkWithConstraints/EnergyMinimizationTest (3893 ms total) +46: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 (22 ms) +46: [----------] 6 tests from MinimizersWorkWithConstraints/EnergyMinimizationTest (1754 ms total) 46: 46: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest 46: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 @@ -86052,7 +86070,7 @@ 46: Norm of force = 1.63839399694378e+00 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_0_minimize.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 (20 ms) +46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 (6 ms) 46: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/1 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_1_input.mdp]: @@ -86100,7 +86118,7 @@ 46: Norm of force = 1.05251679559130e+00 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_1_minimize.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Last energy frame read 1 time 0.000 This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/1 (23 ms) +46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/1 (6 ms) 46: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/2 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_2_input.mdp]: @@ -86158,7 +86176,7 @@ 46: Norm of force = 1.05251679559130e+00 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_2_minimize.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Last energy frame read 1 time 0.000 This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/2 (20 ms) +46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/2 (6 ms) 46: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_3_input.mdp]: @@ -86214,7 +86232,7 @@ 46: Norm of force = 4.62274878665467e+03 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_3_minimize.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 (373 ms) +46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 (147 ms) 46: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_4_input.mdp]: @@ -86273,7 +86291,7 @@ 46: Norm of force = 3.61390332564874e+03 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_4_minimize.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 (480 ms) +46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 (143 ms) 46: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_5_input.mdp]: @@ -86342,8 +86360,8 @@ 46: Norm of force = 6.06436286976271e+03 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_5_minimize.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 This run will generate roughly 0 Mb of data -46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 (384 ms) -46: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest (1300 ms total) +46: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 (142 ms) +46: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest (450 ms total) 46: 46: [----------] 5 tests from NormalModesWorks/NormalModesTest 46: [ RUN ] NormalModesWorks/NormalModesTest.WithinTolerances/0 @@ -86409,7 +86427,7 @@ 46: Full matrix storage format, nrow=18, ncols=18 46: Writing eigenfrequencies - negative eigenvalues will be set to zero. 46: Cannot compute entropy when -first = 7 -46: [ OK ] NormalModesWorks/NormalModesTest.WithinTolerances/0 (58 ms) +46: [ OK ] NormalModesWorks/NormalModesTest.WithinTolerances/0 (9 ms) 46: [ RUN ] NormalModesWorks/NormalModesTest.WithinTolerances/1 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalModesWorks_NormalModesTest_WithinTolerances_1_input.mdp]: @@ -86482,7 +86500,7 @@ 46: Full matrix storage format, nrow=768, ncols=768 46: Writing eigenfrequencies - negative eigenvalues will be set to zero. 46: Cannot compute entropy when -first = 7 -46: [ OK ] NormalModesWorks/NormalModesTest.WithinTolerances/1 (6328 ms) +46: [ OK ] NormalModesWorks/NormalModesTest.WithinTolerances/1 (1969 ms) 46: [ RUN ] NormalModesWorks/NormalModesTest.WithinTolerances/2 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalModesWorks_NormalModesTest_WithinTolerances_2_input.mdp]: @@ -86546,7 +86564,7 @@ 46: Full matrix storage format, nrow=18, ncols=18 46: Writing eigenfrequencies - negative eigenvalues will be set to zero. 46: Cannot compute entropy when -first = 7 -46: [ OK ] NormalModesWorks/NormalModesTest.WithinTolerances/2 (956 ms) +46: [ OK ] NormalModesWorks/NormalModesTest.WithinTolerances/2 (799 ms) 46: [ RUN ] NormalModesWorks/NormalModesTest.WithinTolerances/3 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalModesWorks_NormalModesTest_WithinTolerances_3_input.mdp]: @@ -86612,7 +86630,7 @@ 46: Full matrix storage format, nrow=9, ncols=9 46: Writing eigenfrequencies - negative eigenvalues will be set to zero. 46: Cannot compute entropy when -first = 7 -46: [ OK ] NormalModesWorks/NormalModesTest.WithinTolerances/3 (596 ms) +46: [ OK ] NormalModesWorks/NormalModesTest.WithinTolerances/3 (782 ms) 46: [ RUN ] NormalModesWorks/NormalModesTest.WithinTolerances/4 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalModesWorks_NormalModesTest_WithinTolerances_4_input.mdp]: @@ -86678,8 +86696,8 @@ 46: Full matrix storage format, nrow=18, ncols=18 46: Writing eigenfrequencies - negative eigenvalues will be set to zero. 46: Cannot compute entropy when -first = 7 -46: [ OK ] NormalModesWorks/NormalModesTest.WithinTolerances/4 (11 ms) -46: [----------] 5 tests from NormalModesWorks/NormalModesTest (7949 ms total) +46: [ OK ] NormalModesWorks/NormalModesTest.WithinTolerances/4 (9 ms) +46: [----------] 5 tests from NormalModesWorks/NormalModesTest (3568 ms total) 46: 46: [----------] 12 tests from NormalMdrunIsReproduced/MdrunRerunTest 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/0 @@ -86729,9 +86747,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.001 193.3 +46: Time: 0.003 0.002 194.7 46: (ns/day) (hour/ns) -46: Performance: 1088.829 0.022 +46: Performance: 832.063 0.029 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -86752,18 +86770,18 @@ 46: trr version: GMX_trn_file (double precision) 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 22 % of the run time was spent in pair search, +46: NOTE: 27 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 194.5 +46: Time: 0.002 0.001 196.6 46: (ns/day) (hour/ns) -46: Performance: 2311.667 0.010 +46: Performance: 1858.960 0.013 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_0_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_0_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/0 (23 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/0 (12 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/1 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_1_input.mdp]: @@ -86811,9 +86829,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.004 0.002 197.6 +46: Time: 0.004 0.002 197.7 46: (ns/day) (hour/ns) -46: Performance: 649.578 0.037 +46: Performance: 763.963 0.031 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -86837,14 +86855,14 @@ 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 194.9 +46: Time: 0.001 0.001 196.1 46: (ns/day) (hour/ns) -46: Performance: 2827.257 0.008 +46: Performance: 2122.147 0.011 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_1_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_1_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/1 (22 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/1 (12 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/2 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_2_input.mdp]: @@ -86888,9 +86906,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.001 192.5 +46: Time: 0.003 0.002 194.9 46: (ns/day) (hour/ns) -46: Performance: 1030.372 0.023 +46: Performance: 870.263 0.028 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -86911,15 +86929,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: +46: NOTE: 20 % of the run time was spent in pair search, +46: you might want to increase nstlist (this has no effect on accuracy) +46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.020 0.010 199.6 +46: Time: 0.002 0.001 196.1 46: (ns/day) (hour/ns) -46: Performance: 149.482 0.161 +46: Performance: 1917.396 0.013 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_2_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_2_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/2 (27 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/2 (11 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/3 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_3_input.mdp]: @@ -86963,9 +86984,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.004 0.002 194.7 +46: Time: 0.004 0.002 195.3 46: (ns/day) (hour/ns) -46: Performance: 663.285 0.036 +46: Performance: 790.326 0.030 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -86986,18 +87007,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 21 % of the run time was spent in pair search, +46: NOTE: 23 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 195.0 +46: Time: 0.002 0.001 196.4 46: (ns/day) (hour/ns) -46: Performance: 2584.142 0.009 +46: Performance: 1821.045 0.013 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_3_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_3_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/3 (25 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/3 (12 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/4 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_4_input.mdp]: @@ -87053,9 +87074,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 193.7 +46: Time: 0.004 0.002 194.7 46: (ns/day) (hour/ns) -46: Performance: 898.963 0.027 +46: Performance: 757.481 0.032 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -87075,18 +87096,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 22 % of the run time was spent in pair search, +46: NOTE: 26 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 194.9 +46: Time: 0.002 0.001 196.0 46: (ns/day) (hour/ns) -46: Performance: 2437.908 0.010 +46: Performance: 1630.649 0.015 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_4_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_4_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/4 (589 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/4 (748 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/5 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_5_input.mdp]: @@ -87142,9 +87163,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.004 0.002 197.4 +46: Time: 0.005 0.002 197.5 46: (ns/day) (hour/ns) -46: Performance: 730.361 0.033 +46: Performance: 609.598 0.039 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -87164,18 +87185,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 22 % of the run time was spent in pair search, +46: NOTE: 26 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 195.1 +46: Time: 0.002 0.001 193.8 46: (ns/day) (hour/ns) -46: Performance: 2472.148 0.010 +46: Performance: 1813.540 0.013 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_5_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_5_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/5 (591 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/5 (1329 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/6 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_6_input.mdp]: @@ -87227,9 +87248,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 193.2 +46: Time: 0.004 0.002 194.1 46: (ns/day) (hour/ns) -46: Performance: 917.984 0.026 +46: Performance: 752.761 0.032 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -87250,18 +87271,15 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 25 % of the run time was spent in pair search, -46: you might want to increase nstlist (this has no effect on accuracy) -46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.001 0.001 194.8 +46: Time: 0.010 0.005 198.6 46: (ns/day) (hour/ns) -46: Performance: 2041.960 0.012 +46: Performance: 303.972 0.079 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_6_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_6_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/6 (600 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/6 (1572 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/7 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_7_input.mdp]: @@ -87313,9 +87331,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 193.4 +46: Time: 0.004 0.002 194.5 46: (ns/day) (hour/ns) -46: Performance: 811.566 0.030 +46: Performance: 752.393 0.032 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -87336,18 +87354,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 25 % of the run time was spent in pair search, +46: NOTE: 26 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 194.5 +46: Time: 0.002 0.001 194.0 46: (ns/day) (hour/ns) -46: Performance: 1864.586 0.013 +46: Performance: 1826.985 0.013 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_7_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_7_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/7 (1043 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/7 (1628 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/8 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_8_input.mdp]: @@ -87420,9 +87438,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.062 0.031 199.2 +46: Time: 0.030 0.015 198.4 46: (ns/day) (hour/ns) -46: Performance: 46.895 0.512 +46: Performance: 96.661 0.248 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -87442,18 +87460,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 15 % of the run time was spent in pair search, +46: NOTE: 16 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.001 195.0 +46: Time: 0.003 0.001 194.7 46: (ns/day) (hour/ns) -46: Performance: 1041.873 0.023 +46: Performance: 1064.373 0.023 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_8_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_8_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/8 (99 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/8 (85 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/9 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_9_input.mdp]: @@ -87526,9 +87544,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.046 0.023 198.9 +46: Time: 0.033 0.017 199.0 46: (ns/day) (hour/ns) -46: Performance: 62.996 0.381 +46: Performance: 87.630 0.274 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -87548,18 +87566,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 18 % of the run time was spent in pair search, +46: NOTE: 16 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.001 194.7 +46: Time: 0.003 0.001 195.1 46: (ns/day) (hour/ns) -46: Performance: 1072.527 0.022 +46: Performance: 1144.454 0.021 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_9_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_9_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/9 (97 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/9 (87 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/10 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_10_input.mdp]: @@ -87628,9 +87646,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.007 0.004 173.1 +46: Time: 0.015 0.008 197.7 46: (ns/day) (hour/ns) -46: Performance: 381.792 0.063 +46: Performance: 193.918 0.124 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -87655,14 +87673,14 @@ 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.002 0.001 192.7 +46: Time: 0.003 0.001 195.5 46: (ns/day) (hour/ns) -46: Performance: 1150.867 0.021 +46: Performance: 1088.636 0.022 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_10_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_10_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/10 (72 ms) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/10 (96 ms) 46: [ RUN ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/11 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_11_input.mdp]: @@ -87730,13 +87748,10 @@ 46: 46: Writing final coordinates. 46: -46: NOTE: 40 % of the run time was spent in pair search, -46: you might want to increase nstlist (this has no effect on accuracy) -46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.041 0.020 199.0 +46: Time: 0.026 0.013 198.4 46: (ns/day) (hour/ns) -46: Performance: 71.740 0.335 +46: Performance: 112.582 0.213 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -87757,16 +87772,19 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: +46: NOTE: 18 % of the run time was spent in pair search, +46: you might want to increase nstlist (this has no effect on accuracy) +46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.019 0.009 199.2 +46: Time: 0.003 0.001 195.1 46: (ns/day) (hour/ns) -46: Performance: 157.246 0.153 +46: Performance: 1066.216 0.023 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_11_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NormalMdrunIsReproduced_MdrunRerunTest_WithinTolerances_11_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/11 (82 ms) -46: [----------] 12 tests from NormalMdrunIsReproduced/MdrunRerunTest (3274 ms total) +46: [ OK ] NormalMdrunIsReproduced/MdrunRerunTest.WithinTolerances/11 (62 ms) +46: [----------] 12 tests from NormalMdrunIsReproduced/MdrunRerunTest (5654 ms total) 46: 46: [----------] 33 tests from MdrunIsReproduced/MdrunRerunFreeEnergyTest 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/0 @@ -87827,9 +87845,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.024 0.012 198.3 +46: Time: 0.017 0.009 197.9 46: (ns/day) (hour/ns) -46: Performance: 120.486 0.199 +46: Performance: 171.911 0.140 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -87849,18 +87867,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 15 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 194.7 +46: Time: 0.003 0.002 194.6 46: (ns/day) (hour/ns) -46: Performance: 966.065 0.025 +46: Performance: 944.442 0.025 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_0_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_0_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/0 (50 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/0 (42 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/1 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_1_input.mdp]: @@ -87919,9 +87937,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.046 0.023 198.5 +46: Time: 0.022 0.011 197.8 46: (ns/day) (hour/ns) -46: Performance: 63.195 0.380 +46: Performance: 133.222 0.180 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -87941,18 +87959,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 15 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.001 194.4 +46: Time: 0.003 0.002 195.1 46: (ns/day) (hour/ns) -46: Performance: 984.278 0.024 +46: Performance: 935.407 0.026 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_1_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_1_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/1 (93 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/1 (56 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/2 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_2_input.mdp]: @@ -88011,9 +88029,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.024 0.012 198.3 +46: Time: 0.021 0.011 197.9 46: (ns/day) (hour/ns) -46: Performance: 118.884 0.202 +46: Performance: 137.849 0.174 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -88037,14 +88055,14 @@ 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 195.2 +46: Time: 0.003 0.001 194.2 46: (ns/day) (hour/ns) -46: Performance: 905.171 0.027 +46: Performance: 1019.459 0.024 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_2_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_2_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/2 (72 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/2 (49 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/3 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_3_input.mdp]: @@ -88103,9 +88121,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.047 0.024 198.5 +46: Time: 0.008 0.004 195.1 46: (ns/day) (hour/ns) -46: Performance: 61.761 0.389 +46: Performance: 358.695 0.067 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -88125,18 +88143,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 15 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 194.7 +46: Time: 0.003 0.002 194.6 46: (ns/day) (hour/ns) -46: Performance: 976.322 0.025 +46: Performance: 953.800 0.025 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_3_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_3_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/3 (112 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/3 (39 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/4 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_4_input.mdp]: @@ -88195,9 +88213,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.118 0.059 199.5 +46: Time: 0.016 0.008 197.3 46: (ns/day) (hour/ns) -46: Performance: 24.802 0.968 +46: Performance: 184.615 0.130 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -88217,18 +88235,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 16 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 195.0 +46: Time: 0.003 0.002 194.7 46: (ns/day) (hour/ns) -46: Performance: 936.688 0.026 +46: Performance: 926.684 0.026 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_4_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_4_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/4 (143 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/4 (60 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/5 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_5_input.mdp]: @@ -88287,9 +88305,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.047 0.023 198.9 +46: Time: 0.014 0.007 197.2 46: (ns/day) (hour/ns) -46: Performance: 62.666 0.383 +46: Performance: 202.564 0.118 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -88313,14 +88331,14 @@ 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.001 194.9 +46: Time: 0.003 0.002 195.3 46: (ns/day) (hour/ns) -46: Performance: 987.433 0.024 +46: Performance: 955.724 0.025 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_5_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_5_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/5 (124 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/5 (48 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/6 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_6_input.mdp]: @@ -88379,9 +88397,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.031 0.015 198.5 +46: Time: 0.015 0.008 197.4 46: (ns/day) (hour/ns) -46: Performance: 94.837 0.253 +46: Performance: 187.806 0.128 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -88405,14 +88423,14 @@ 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 193.9 +46: Time: 0.003 0.002 194.6 46: (ns/day) (hour/ns) -46: Performance: 921.004 0.026 +46: Performance: 817.597 0.029 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_6_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_6_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/6 (96 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/6 (48 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/7 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_7_input.mdp]: @@ -88471,9 +88489,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.016 0.008 197.3 +46: Time: 0.014 0.007 197.1 46: (ns/day) (hour/ns) -46: Performance: 179.051 0.134 +46: Performance: 205.278 0.117 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -88493,18 +88511,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 15 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 195.0 +46: Time: 0.003 0.002 194.7 46: (ns/day) (hour/ns) -46: Performance: 904.374 0.027 +46: Performance: 890.131 0.027 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_7_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_7_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/7 (88 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/7 (44 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/8 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_8_input.mdp]: @@ -88563,9 +88581,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.016 0.008 197.5 +46: Time: 0.016 0.008 197.7 46: (ns/day) (hour/ns) -46: Performance: 180.245 0.133 +46: Performance: 177.064 0.136 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -88585,18 +88603,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 13 % of the run time was spent in pair search, +46: NOTE: 14 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 194.9 +46: Time: 0.003 0.002 194.5 46: (ns/day) (hour/ns) -46: Performance: 948.221 0.025 +46: Performance: 872.111 0.028 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_8_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_8_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/8 (85 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/8 (51 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/9 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_9_input.mdp]: @@ -88655,9 +88673,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.030 0.015 198.4 +46: Time: 0.021 0.011 197.6 46: (ns/day) (hour/ns) -46: Performance: 95.852 0.250 +46: Performance: 136.774 0.175 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -88681,14 +88699,14 @@ 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 195.2 +46: Time: 0.003 0.002 195.1 46: (ns/day) (hour/ns) -46: Performance: 941.843 0.025 +46: Performance: 864.766 0.028 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_9_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_9_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/9 (91 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/9 (45 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/10 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_10_input.mdp]: @@ -88747,9 +88765,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.030 0.015 197.9 +46: Time: 0.008 0.004 195.8 46: (ns/day) (hour/ns) -46: Performance: 96.764 0.248 +46: Performance: 343.323 0.070 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -88769,18 +88787,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 15 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 195.3 +46: Time: 0.003 0.002 194.8 46: (ns/day) (hour/ns) -46: Performance: 929.200 0.026 +46: Performance: 973.545 0.025 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_10_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_10_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/10 (96 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/10 (44 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/11 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_11_input.mdp]: @@ -88839,9 +88857,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.024 0.012 199.2 +46: Time: 0.018 0.009 198.7 46: (ns/day) (hour/ns) -46: Performance: 123.399 0.194 +46: Performance: 158.623 0.151 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -88861,18 +88879,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 13 % of the run time was spent in pair search, +46: NOTE: 14 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.001 195.1 +46: Time: 0.003 0.002 193.8 46: (ns/day) (hour/ns) -46: Performance: 995.089 0.024 +46: Performance: 947.638 0.025 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_11_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_11_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/11 (83 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/11 (48 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/12 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_12_input.mdp]: @@ -88931,9 +88949,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.031 0.016 199.3 +46: Time: 0.015 0.008 198.2 46: (ns/day) (hour/ns) -46: Performance: 94.501 0.254 +46: Performance: 187.943 0.128 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -88953,18 +88971,15 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, -46: you might want to increase nstlist (this has no effect on accuracy) -46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 195.0 +46: Time: 0.019 0.010 198.7 46: (ns/day) (hour/ns) -46: Performance: 842.993 0.028 +46: Performance: 152.222 0.158 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_12_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_12_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/12 (91 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/12 (53 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/13 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_13_input.mdp]: @@ -89023,9 +89038,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.029 0.015 199.3 +46: Time: 0.010 0.005 197.9 46: (ns/day) (hour/ns) -46: Performance: 100.162 0.240 +46: Performance: 303.343 0.079 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -89045,18 +89060,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 13 % of the run time was spent in pair search, +46: NOTE: 14 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 195.3 +46: Time: 0.003 0.002 194.3 46: (ns/day) (hour/ns) -46: Performance: 904.905 0.027 +46: Performance: 932.575 0.026 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_13_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_13_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/13 (100 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/13 (42 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/14 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_14_input.mdp]: @@ -89115,9 +89130,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.026 0.013 199.3 +46: Time: 0.017 0.009 198.5 46: (ns/day) (hour/ns) -46: Performance: 112.393 0.214 +46: Performance: 170.290 0.141 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -89137,18 +89152,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 15 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.001 195.0 +46: Time: 0.003 0.002 195.2 46: (ns/day) (hour/ns) -46: Performance: 992.843 0.024 +46: Performance: 933.141 0.026 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_14_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_14_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/14 (96 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/14 (48 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/15 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_15_input.mdp]: @@ -89206,13 +89221,10 @@ 46: 46: Writing final coordinates. 46: -46: NOTE: 42 % of the run time was spent in pair search, -46: you might want to increase nstlist (this has no effect on accuracy) -46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.137 0.069 199.8 +46: Time: 0.017 0.009 198.5 46: (ns/day) (hour/ns) -46: Performance: 21.412 1.121 +46: Performance: 170.639 0.141 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -89232,18 +89244,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 54 % of the run time was spent in pair search, +46: NOTE: 71 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.115 0.058 199.8 +46: Time: 0.012 0.006 198.3 46: (ns/day) (hour/ns) -46: Performance: 25.543 0.940 +46: Performance: 249.831 0.096 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_15_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_15_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/15 (224 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/15 (49 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/16 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_16_input.mdp]: @@ -89302,9 +89314,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.022 0.011 199.1 +46: Time: 0.018 0.009 198.8 46: (ns/day) (hour/ns) -46: Performance: 135.133 0.178 +46: Performance: 159.514 0.150 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -89324,18 +89336,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 15 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) 46: Time: 0.003 0.001 194.8 46: (ns/day) (hour/ns) -46: Performance: 989.018 0.024 +46: Performance: 989.495 0.024 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_16_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_16_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/16 (106 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/16 (43 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/17 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_17_input.mdp]: @@ -89394,9 +89406,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.024 0.012 199.1 +46: Time: 0.016 0.008 198.6 46: (ns/day) (hour/ns) -46: Performance: 124.035 0.193 +46: Performance: 188.047 0.128 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -89416,18 +89428,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 15 % of the run time was spent in pair search, +46: NOTE: 14 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 193.6 +46: Time: 0.003 0.002 195.3 46: (ns/day) (hour/ns) -46: Performance: 923.212 0.026 +46: Performance: 844.495 0.028 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_17_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_17_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/17 (60 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/17 (48 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/18 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_18_input.mdp]: @@ -89486,9 +89498,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.024 0.012 199.1 +46: Time: 0.016 0.008 198.5 46: (ns/day) (hour/ns) -46: Performance: 124.233 0.193 +46: Performance: 187.394 0.128 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -89508,18 +89520,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 13 % of the run time was spent in pair search, +46: NOTE: 16 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 195.0 +46: Time: 0.003 0.002 194.9 46: (ns/day) (hour/ns) -46: Performance: 908.508 0.026 +46: Performance: 912.410 0.026 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_18_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_18_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/18 (62 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/18 (48 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/19 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_19_input.mdp]: @@ -89578,9 +89590,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.014 0.007 198.3 +46: Time: 0.016 0.008 198.1 46: (ns/day) (hour/ns) -46: Performance: 213.376 0.112 +46: Performance: 177.518 0.135 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -89600,18 +89612,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 16 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 195.4 +46: Time: 0.003 0.002 195.1 46: (ns/day) (hour/ns) -46: Performance: 858.739 0.028 +46: Performance: 903.976 0.027 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_19_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_19_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/19 (49 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/19 (48 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/20 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_20_input.mdp]: @@ -89670,9 +89682,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.017 0.009 198.8 +46: Time: 0.016 0.008 198.5 46: (ns/day) (hour/ns) -46: Performance: 171.920 0.140 +46: Performance: 184.748 0.130 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -89692,18 +89704,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 15 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 195.1 +46: Time: 0.003 0.001 194.0 46: (ns/day) (hour/ns) -46: Performance: 965.459 0.025 +46: Performance: 1005.975 0.024 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_20_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_20_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/20 (54 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/20 (48 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/21 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_21_input.mdp]: @@ -89762,9 +89774,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.015 0.007 198.7 +46: Time: 0.015 0.008 198.5 46: (ns/day) (hour/ns) -46: Performance: 199.870 0.120 +46: Performance: 190.849 0.126 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -89784,15 +89796,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: +46: NOTE: 14 % of the run time was spent in pair search, +46: you might want to increase nstlist (this has no effect on accuracy) +46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.011 0.006 198.4 +46: Time: 0.003 0.002 194.6 46: (ns/day) (hour/ns) -46: Performance: 260.998 0.092 +46: Performance: 959.295 0.025 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_21_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_21_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/21 (56 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/21 (48 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/22 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_22_input.mdp]: @@ -89846,10 +89861,13 @@ 46: 46: Writing final coordinates. 46: +46: NOTE: 33 % of the run time was spent in pair search, +46: you might want to increase nstlist (this has no effect on accuracy) +46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.021 0.011 197.6 +46: Time: 0.025 0.013 198.3 46: (ns/day) (hour/ns) -46: Performance: 135.314 0.177 +46: Performance: 114.522 0.210 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -89870,15 +89888,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: +46: NOTE: 72 % of the run time was spent in pair search, +46: you might want to increase nstlist (this has no effect on accuracy) +46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.011 0.006 198.4 +46: Time: 0.012 0.006 197.0 46: (ns/day) (hour/ns) -46: Performance: 265.097 0.091 +46: Performance: 245.168 0.098 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_22_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_22_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/22 (73 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/22 (75 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/23 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_23_input.mdp]: @@ -89932,10 +89953,13 @@ 46: 46: Writing final coordinates. 46: +46: NOTE: 33 % of the run time was spent in pair search, +46: you might want to increase nstlist (this has no effect on accuracy) +46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.017 0.009 197.6 +46: Time: 0.025 0.013 198.4 46: (ns/day) (hour/ns) -46: Performance: 168.400 0.143 +46: Performance: 115.278 0.208 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -89962,12 +89986,12 @@ 46: Core t (s) Wall t (s) (%) 46: Time: 0.003 0.002 195.0 46: (ns/day) (hour/ns) -46: Performance: 948.367 0.025 +46: Performance: 906.103 0.026 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_23_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_23_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/23 (69 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/23 (68 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/24 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_24_input.mdp]: @@ -90021,10 +90045,13 @@ 46: 46: Writing final coordinates. 46: +46: NOTE: 45 % of the run time was spent in pair search, +46: you might want to increase nstlist (this has no effect on accuracy) +46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.090 0.045 199.5 +46: Time: 0.018 0.009 197.7 46: (ns/day) (hour/ns) -46: Performance: 32.678 0.734 +46: Performance: 157.455 0.152 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -90045,18 +90072,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, +46: NOTE: 22 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 194.7 +46: Time: 0.004 0.002 195.3 46: (ns/day) (hour/ns) -46: Performance: 883.746 0.027 +46: Performance: 818.466 0.029 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_24_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_24_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/24 (160 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/24 (63 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/25 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_25_input.mdp]: @@ -90111,9 +90138,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.088 0.044 199.4 +46: Time: 0.025 0.013 198.6 46: (ns/day) (hour/ns) -46: Performance: 33.147 0.724 +46: Performance: 114.558 0.210 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -90134,18 +90161,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 13 % of the run time was spent in pair search, +46: NOTE: 18 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.004 0.002 194.4 +46: Time: 0.003 0.002 194.5 46: (ns/day) (hour/ns) -46: Performance: 759.255 0.032 +46: Performance: 908.374 0.026 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_25_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_25_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/25 (155 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/25 (66 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/26 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_26_input.mdp]: @@ -90200,9 +90227,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.025 0.013 198.1 +46: Time: 0.024 0.012 198.1 46: (ns/day) (hour/ns) -46: Performance: 115.688 0.207 +46: Performance: 119.763 0.200 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -90223,18 +90250,15 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 14 % of the run time was spent in pair search, -46: you might want to increase nstlist (this has no effect on accuracy) -46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 194.7 +46: Time: 0.012 0.006 198.3 46: (ns/day) (hour/ns) -46: Performance: 917.164 0.026 +46: Performance: 250.166 0.096 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_26_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_26_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/26 (118 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/26 (70 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/27 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_27_input.mdp]: @@ -90289,9 +90313,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.047 0.023 198.9 +46: Time: 0.017 0.009 197.3 46: (ns/day) (hour/ns) -46: Performance: 62.680 0.383 +46: Performance: 170.149 0.141 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -90316,14 +90340,14 @@ 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 194.9 +46: Time: 0.003 0.002 195.3 46: (ns/day) (hour/ns) -46: Performance: 852.206 0.028 +46: Performance: 830.941 0.029 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_27_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_27_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/27 (151 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/27 (66 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/28 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_28_input.mdp]: @@ -90378,9 +90402,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.090 0.045 199.5 +46: Time: 0.025 0.013 198.3 46: (ns/day) (hour/ns) -46: Performance: 32.535 0.738 +46: Performance: 114.597 0.209 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -90401,18 +90425,15 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 13 % of the run time was spent in pair search, -46: you might want to increase nstlist (this has no effect on accuracy) -46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 194.8 +46: Time: 0.011 0.006 198.4 46: (ns/day) (hour/ns) -46: Performance: 877.828 0.027 +46: Performance: 257.184 0.093 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_28_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_28_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/28 (152 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/28 (70 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/29 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_29_input.mdp]: @@ -90467,9 +90488,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.058 0.029 199.2 +46: Time: 0.016 0.008 197.6 46: (ns/day) (hour/ns) -46: Performance: 50.652 0.474 +46: Performance: 176.866 0.136 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -90490,18 +90511,18 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 18 % of the run time was spent in pair search, +46: NOTE: 15 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 195.3 +46: Time: 0.003 0.002 195.2 46: (ns/day) (hour/ns) -46: Performance: 954.539 0.025 +46: Performance: 912.951 0.026 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_29_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_29_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/29 (133 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/29 (66 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/30 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_30_input.mdp]: @@ -90556,9 +90577,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.048 0.024 199.0 +46: Time: 0.025 0.012 198.1 46: (ns/day) (hour/ns) -46: Performance: 60.971 0.394 +46: Performance: 117.893 0.204 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -90579,18 +90600,15 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 13 % of the run time was spent in pair search, -46: you might want to increase nstlist (this has no effect on accuracy) -46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 190.7 +46: Time: 0.012 0.006 198.1 46: (ns/day) (hour/ns) -46: Performance: 882.227 0.027 +46: Performance: 246.730 0.097 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_30_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_30_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/30 (192 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/30 (74 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/31 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_31_input.mdp]: @@ -90645,9 +90663,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.103 0.051 199.5 +46: Time: 0.024 0.012 198.1 46: (ns/day) (hour/ns) -46: Performance: 28.558 0.840 +46: Performance: 118.967 0.202 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -90672,14 +90690,14 @@ 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.003 0.002 194.9 +46: Time: 0.004 0.002 195.0 46: (ns/day) (hour/ns) -46: Performance: 829.151 0.029 +46: Performance: 776.872 0.031 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_31_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_31_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/31 (192 ms) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/31 (68 ms) 46: [ RUN ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/32 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_32_input.mdp]: @@ -90734,9 +90752,9 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.032 0.016 198.2 +46: Time: 0.014 0.007 197.0 46: (ns/day) (hour/ns) -46: Performance: 89.924 0.267 +46: Performance: 199.812 0.120 46: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 46: log). 46: The current CPU can measure timings more accurately than the code in @@ -90757,19 +90775,19 @@ 46: 46: Reading frame 0 time 0.000 Reading frame 1 time 0.004 Reading frame 2 time 0.008 Reading frame 3 time 0.012 Reading frame 4 time 0.016 Last frame 4 time 0.016 46: -46: NOTE: 38 % of the run time was spent in pair search, +46: NOTE: 15 % of the run time was spent in pair search, 46: you might want to increase nstlist (this has no effect on accuracy) 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.044 0.022 199.4 +46: Time: 0.003 0.002 194.1 46: (ns/day) (hour/ns) -46: Performance: 67.200 0.357 +46: Performance: 961.091 0.025 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_32_sim2.edr as double precision energy file 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunIsReproduced_MdrunRerunFreeEnergyTest_WithinTolerances_32_sim1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 Last energy frame read 4 time 0.016 46: -46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/32 (150 ms) -46: [----------] 33 tests from MdrunIsReproduced/MdrunRerunFreeEnergyTest (3577 ms total) +46: [ OK ] MdrunIsReproduced/MdrunRerunFreeEnergyTest.WithinTolerances/32 (61 ms) +46: [----------] 33 tests from MdrunIsReproduced/MdrunRerunFreeEnergyTest (1797 ms total) 46: 46: [----------] 2 tests from Angles1/SimpleMdrunTest 46: [ RUN ] Angles1/SimpleMdrunTest.WithinTolerances/0 @@ -90824,12 +90842,12 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.030 0.015 198.9 +46: Time: 0.021 0.011 198.5 46: (ns/day) (hour/ns) -46: Performance: 287.574 0.083 +46: Performance: 407.644 0.059 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Angles1_SimpleMdrunTest_WithinTolerances_0.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 5 time 0.020 Reading energy frame 6 time 0.024 Reading energy frame 7 time 0.028 Reading energy frame 8 time 0.032 Reading energy frame 9 time 0.036 Reading energy frame 10 time 0.040 Reading energy frame 11 time 0.044 Reading energy frame 12 time 0.048 Reading energy frame 13 time 0.050 Last energy frame read 13 time 0.050 -46: [ OK ] Angles1/SimpleMdrunTest.WithinTolerances/0 (33 ms) +46: [ OK ] Angles1/SimpleMdrunTest.WithinTolerances/0 (19 ms) 46: [ RUN ] Angles1/SimpleMdrunTest.WithinTolerances/1 46: 46: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Angles1_SimpleMdrunTest_WithinTolerances_1_input.mdp]: @@ -90882,18 +90900,18 @@ 46: Writing final coordinates. 46: 46: Core t (s) Wall t (s) (%) -46: Time: 0.023 0.012 199.2 +46: Time: 0.023 0.012 199.4 46: (ns/day) (hour/ns) -46: Performance: 373.770 0.064 +46: Performance: 376.311 0.064 46: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Angles1_SimpleMdrunTest_WithinTolerances_1.edr as double precision energy file 46: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 5 time 0.020 Reading energy frame 6 time 0.024 Reading energy frame 7 time 0.028 Reading energy frame 8 time 0.032 Reading energy frame 9 time 0.036 Reading energy frame 10 time 0.040 Reading energy frame 11 time 0.044 Reading energy frame 12 time 0.048 Reading energy frame 13 time 0.050 Last energy frame read 13 time 0.050 -46: [ OK ] Angles1/SimpleMdrunTest.WithinTolerances/1 (31 ms) -46: [----------] 2 tests from Angles1/SimpleMdrunTest (64 ms total) +46: [ OK ] Angles1/SimpleMdrunTest.WithinTolerances/1 (20 ms) +46: [----------] 2 tests from Angles1/SimpleMdrunTest (39 ms total) 46: 46: [----------] Global test environment tear-down -46: [==========] 65 tests from 7 test cases ran. (20162 ms total) +46: [==========] 65 tests from 7 test cases ran. (13312 ms total) 46: [ PASSED ] 65 tests. -46/54 Test #46: MdrunNonIntegratorTests ............. Passed 20.27 sec +46/54 Test #46: MdrunNonIntegratorTests ............. Passed 13.40 sec test 47 Start 47: MdrunTpiTests @@ -90934,7 +90952,7 @@ 47: There are: 1 Other residues 47: Analysing residues not classified as Protein/DNA/RNA/Water and splitting into groups... 47: This run will generate roughly 0 Mb of data -47: [ OK ] Simple/TpiTest.ReproducesOutput/0 (1826 ms) +47: [ OK ] Simple/TpiTest.ReproducesOutput/0 (1308 ms) 47: [ RUN ] Simple/TpiTest.ReproducesOutput/1 47: Ignoring obsolete mdp entry 'ns_type' 47: Generated 331705 of the 331705 non-bonded parameter combinations @@ -90967,13 +90985,13 @@ 47: There are: 1 Other residues 47: Analysing residues not classified as Protein/DNA/RNA/Water and splitting into groups... 47: This run will generate roughly 0 Mb of data -47: [ OK ] Simple/TpiTest.ReproducesOutput/1 (1528 ms) -47: [----------] 2 tests from Simple/TpiTest (3354 ms total) +47: [ OK ] Simple/TpiTest.ReproducesOutput/1 (1013 ms) +47: [----------] 2 tests from Simple/TpiTest (2321 ms total) 47: 47: [----------] Global test environment tear-down -47: [==========] 2 tests from 1 test case ran. (3354 ms total) +47: [==========] 2 tests from 1 test case ran. (2321 ms total) 47: [ PASSED ] 2 tests. -47/54 Test #47: MdrunTpiTests ....................... Passed 3.41 sec +47/54 Test #47: MdrunTpiTests ....................... Passed 2.37 sec test 48 Start 48: MdrunMpiTests @@ -90988,7 +91006,7 @@ 48: For a correct single-point energy evaluation with nsteps = 0, use 48: continuation = yes to avoid constraining the input coordinates. 48: -48: Setting the LD random seed to -268582945 +48: Setting the LD random seed to 664795573 48: Generated 3 of the 3 non-bonded parameter combinations 48: Generating 1-4 interactions: fudge = 0.5 48: Generated 3 of the 3 1-4 parameter combinations @@ -91027,16 +91045,20 @@ 48: starting mdrun 'spc2' 48: 0 steps, 0.0 ps. 48: -48: NOTE: 39 % of the run time was spent communicating energies, +48: NOTE: 18 % of the run time was spent in domain decomposition, +48: 7 % of the run time was spent in pair search, +48: you might want to increase nstlist (this has no effect on accuracy) +48: +48: NOTE: 15 % of the run time was spent communicating energies, 48: you might want to increase some nst* mdp options 48: 48: Core t (s) Wall t (s) (%) -48: Time: 0.183 0.066 278.7 +48: Time: 0.808 0.208 388.6 48: (ns/day) (hour/ns) -48: Performance: 1.316 18.243 +48: Performance: 0.416 57.756 48: This run will generate roughly 0 Mb of data -48: [ OK ] DomainDecompositionSpecialCasesTest.AnEmptyDomainWorks (391 ms) -48: [----------] 1 test from DomainDecompositionSpecialCasesTest (391 ms total) +48: [ OK ] DomainDecompositionSpecialCasesTest.AnEmptyDomainWorks (781 ms) +48: [----------] 1 test from DomainDecompositionSpecialCasesTest (781 ms total) 48: 48: [----------] 4 tests from MimicTest 48: [ RUN ] MimicTest.OneQuantumMol @@ -91045,7 +91067,7 @@ 48: For a correct single-point energy evaluation with nsteps = 0, use 48: continuation = yes to avoid constraining the input coordinates. 48: -48: Setting the LD random seed to -153362977 +48: Setting the LD random seed to 1987507638 48: Generated 10 of the 10 non-bonded parameter combinations 48: Generating 1-4 interactions: fudge = 0.5 48: Generated 10 of the 10 1-4 parameter combinations @@ -91086,27 +91108,24 @@ 48: Reading frames from gro file 'Generated by gmx solvate', 12 atoms. 48: Reading frame 0 time 0.000 Last frame 0 time 0.000 48: -48: NOTE: 53 % of the run time was spent in domain decomposition, -48: 10 % of the run time was spent in pair search, +48: NOTE: 79 % of the run time was spent in domain decomposition, +48: 0 % of the run time was spent in pair search, 48: you might want to increase nstlist (this has no effect on accuracy) 48: -48: NOTE: 8 % of the run time was spent communicating energies, -48: you might want to increase some nst* mdp options -48: 48: Core t (s) Wall t (s) (%) -48: Time: 1.197 0.299 399.9 +48: Time: 0.129 0.032 399.4 48: (ns/day) (hour/ns) -48: Performance: 0.289 83.148 +48: Performance: 2.668 8.995 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_OneQuantumMol.edr as double precision energy file 48: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -48: [ OK ] MimicTest.OneQuantumMol (620 ms) +48: [ OK ] MimicTest.OneQuantumMol (118 ms) 48: [ RUN ] MimicTest.AllQuantumMol 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_AllQuantumMol_input.mdp]: 48: For a correct single-point energy evaluation with nsteps = 0, use 48: continuation = yes to avoid constraining the input coordinates. 48: -48: Setting the LD random seed to -1961361541 +48: Setting the LD random seed to -1344295464 48: Generated 10 of the 10 non-bonded parameter combinations 48: Generating 1-4 interactions: fudge = 0.5 48: Generated 10 of the 10 1-4 parameter combinations @@ -91147,24 +91166,24 @@ 48: Reading frames from gro file 'Generated by gmx solvate', 12 atoms. 48: Reading frame 0 time 0.000 Last frame 0 time 0.000 48: -48: NOTE: 72 % of the run time was spent in domain decomposition, -48: 15 % of the run time was spent in pair search, +48: NOTE: 97 % of the run time was spent in domain decomposition, +48: 1 % of the run time was spent in pair search, 48: you might want to increase nstlist (this has no effect on accuracy) 48: 48: Core t (s) Wall t (s) (%) -48: Time: 0.500 0.125 399.8 +48: Time: 0.065 0.016 399.2 48: (ns/day) (hour/ns) -48: Performance: 0.692 34.702 +48: Performance: 5.275 4.550 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_AllQuantumMol.edr as double precision energy file 48: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -48: [ OK ] MimicTest.AllQuantumMol (352 ms) +48: [ OK ] MimicTest.AllQuantumMol (88 ms) 48: [ RUN ] MimicTest.TwoQuantumMol 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_TwoQuantumMol_input.mdp]: 48: For a correct single-point energy evaluation with nsteps = 0, use 48: continuation = yes to avoid constraining the input coordinates. 48: -48: Setting the LD random seed to -276455463 +48: Setting the LD random seed to -1076537381 48: Generated 10 of the 10 non-bonded parameter combinations 48: Generating 1-4 interactions: fudge = 0.5 48: Generated 10 of the 10 1-4 parameter combinations @@ -91205,24 +91224,24 @@ 48: Reading frames from gro file 'Generated by gmx solvate', 12 atoms. 48: Reading frame 0 time 0.000 Last frame 0 time 0.000 48: -48: NOTE: 95 % of the run time was spent in domain decomposition, -48: 0 % of the run time was spent in pair search, +48: NOTE: 24 % of the run time was spent in domain decomposition, +48: 16 % of the run time was spent in pair search, 48: you might want to increase nstlist (this has no effect on accuracy) 48: 48: Core t (s) Wall t (s) (%) -48: Time: 0.498 0.124 399.9 +48: Time: 0.002 0.001 382.0 48: (ns/day) (hour/ns) -48: Performance: 0.694 34.569 +48: Performance: 165.436 0.145 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_TwoQuantumMol.edr as double precision energy file 48: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -48: [ OK ] MimicTest.TwoQuantumMol (325 ms) +48: [ OK ] MimicTest.TwoQuantumMol (32 ms) 48: [ RUN ] MimicTest.BondCuts 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_BondCuts_input.mdp]: 48: For a correct single-point energy evaluation with nsteps = 0, use 48: continuation = yes to avoid constraining the input coordinates. 48: -48: Setting the LD random seed to -67306771 +48: Setting the LD random seed to -139626785 48: Generated 2211 of the 2211 non-bonded parameter combinations 48: Generating 1-4 interactions: fudge = 0.5 48: Generated 2211 of the 2211 1-4 parameter combinations @@ -91263,21 +91282,25 @@ 48: Reading frames from gro file 'Alanine dipeptide in water', 23 atoms. 48: Reading frame 0 time 0.000 Last frame 0 time 0.000 48: -48: NOTE: 19 % of the run time was spent communicating energies, +48: NOTE: 10 % of the run time was spent in domain decomposition, +48: 32 % of the run time was spent in pair search, +48: you might want to increase nstlist (this has no effect on accuracy) +48: +48: NOTE: 11 % of the run time was spent communicating energies, 48: you might want to increase some nst* mdp options 48: 48: Core t (s) Wall t (s) (%) -48: Time: 0.042 0.011 398.6 +48: Time: 0.143 0.036 399.6 48: (ns/day) (hour/ns) -48: Performance: 8.202 2.926 +48: Performance: 2.422 9.907 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MimicTest_BondCuts.edr as double precision energy file 48: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 300.368 K 48: Calculated rlist for 1x1 atom pair-list as 1.034 nm, buffer size 0.034 nm 48: Set rlist, assuming 4x4 atom pair-list, to 1.025 nm, buffer size 0.025 nm 48: Note that mdrun will redetermine rlist based on the actual pair-list setup 48: This run will generate roughly 0 Mb of data -48: [ OK ] MimicTest.BondCuts (147 ms) -48: [----------] 4 tests from MimicTest (1444 ms total) +48: [ OK ] MimicTest.BondCuts (198 ms) +48: [----------] 4 tests from MimicTest (436 ms total) 48: 48: [----------] 1 test from MultiSimTerminationTest 48: [ RUN ] MultiSimTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts @@ -91286,7 +91309,7 @@ 48: 48: [----------] 3 tests from PmeTest 48: [ RUN ] PmeTest.ReproducesEnergies -48: Setting the LD random seed to -824988161 +48: Setting the LD random seed to -341324930 48: Generated 8 of the 10 non-bonded parameter combinations 48: Excluding 2 bonded neighbours molecule type 'Methanol' 48: Excluding 2 bonded neighbours molecule type 'SOL' @@ -91336,14 +91359,10 @@ 48: 48: Writing final coordinates. 48: -48: NOTE: 10 % of the run time was spent in domain decomposition, -48: 4 % of the run time was spent in pair search, -48: you might want to increase nstlist (this has no effect on accuracy) -48: 48: Core t (s) Wall t (s) (%) -48: Time: 2.321 0.580 400.0 +48: Time: 0.176 0.044 398.5 48: (ns/day) (hour/ns) -48: Performance: 3.126 7.677 +48: Performance: 41.063 0.584 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeAuto.edr as double precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 48: log). @@ -91369,9 +91388,9 @@ 48: Writing final coordinates. 48: 48: Core t (s) Wall t (s) (%) -48: Time: 1.944 0.486 399.9 +48: Time: 0.147 0.037 399.2 48: (ns/day) (hour/ns) -48: Performance: 3.733 6.429 +48: Performance: 49.363 0.486 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeOnCpu.edr as double precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 48: log). @@ -91397,18 +91416,18 @@ 48: Writing final coordinates. 48: 48: Core t (s) Wall t (s) (%) -48: Time: 5.950 1.488 400.0 +48: Time: 0.720 0.180 399.8 48: (ns/day) (hour/ns) -48: Performance: 1.220 19.678 +48: Performance: 10.069 2.383 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeOnCpuTune.edr as double precision energy file -48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 [ OK ] PmeTest.ReproducesEnergies (3624 ms) +48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Last energy frame read 20 time 0.020 [ OK ] PmeTest.ReproducesEnergies (669 ms) 48: [ RUN ] PmeTest.ScalesTheBox 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBox_input.mdp]: 48: For a correct single-point energy evaluation with nsteps = 0, use 48: continuation = yes to avoid constraining the input coordinates. 48: -48: Setting the LD random seed to 600505279 +48: Setting the LD random seed to -546312577 48: Generated 8 of the 10 non-bonded parameter combinations 48: Excluding 2 bonded neighbours molecule type 'Methanol' 48: Excluding 2 bonded neighbours molecule type 'SOL' @@ -91449,14 +91468,10 @@ 48: starting mdrun 'spc-and-methanol' 48: 0 steps, 0.0 ps. 48: -48: NOTE: 23 % of the run time was spent in domain decomposition, -48: 30 % of the run time was spent in pair search, -48: you might want to increase nstlist (this has no effect on accuracy) -48: 48: Core t (s) Wall t (s) (%) -48: Time: 0.105 0.026 398.7 +48: Time: 0.004 0.001 351.1 48: (ns/day) (hour/ns) -48: Performance: 3.291 7.292 +48: Performance: 67.704 0.354 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBox_spc-and-methanol_PmeOnCpu.edr as double precision energy file 48: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 1046.79 K 48: Calculated rlist for 1x1 atom pair-list as 1.000 nm, buffer size 0.000 nm @@ -91465,14 +91480,14 @@ 48: Calculating fourier grid dimensions for X Y Z 48: Using a fourier grid of 28x28x28, spacing 0.107 0.107 0.107 48: This run will generate roughly 0 Mb of data -48: [ OK ] PmeTest.ScalesTheBox (176 ms) +48: [ OK ] PmeTest.ScalesTheBox (67 ms) 48: [ RUN ] PmeTest.ScalesTheBoxWithWalls 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBoxWithWalls_input.mdp]: 48: For a correct single-point energy evaluation with nsteps = 0, use 48: continuation = yes to avoid constraining the input coordinates. 48: -48: Setting the LD random seed to -1073762306 +48: Setting the LD random seed to 972748494 48: Generated 8 of the 10 non-bonded parameter combinations 48: Excluding 2 bonded neighbours molecule type 'Methanol' 48: Excluding 2 bonded neighbours molecule type 'SOL' @@ -91514,14 +91529,14 @@ 48: starting mdrun 'spc-and-methanol' 48: 0 steps, 0.0 ps. 48: -48: NOTE: 14 % of the run time was spent in domain decomposition, -48: 14 % of the run time was spent in pair search, +48: NOTE: 17 % of the run time was spent in domain decomposition, +48: 5 % of the run time was spent in pair search, 48: you might want to increase nstlist (this has no effect on accuracy) 48: 48: Core t (s) Wall t (s) (%) -48: Time: 0.096 0.028 342.3 +48: Time: 0.640 0.174 368.1 48: (ns/day) (hour/ns) -48: Performance: 3.072 7.812 +48: Performance: 0.497 48.313 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ScalesTheBoxWithWalls_spc-and-methanol_PmeOnCpu.edr as double precision energy file 48: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 966.268 K 48: Calculated rlist for 1x1 atom pair-list as 1.000 nm, buffer size 0.000 nm @@ -91530,8 +91545,8 @@ 48: Calculating fourier grid dimensions for X Y Z 48: Using a fourier grid of 28x28x128, spacing 0.107 0.107 0.118 48: This run will generate roughly 0 Mb of data -48: [ OK ] PmeTest.ScalesTheBoxWithWalls (1468 ms) -48: [----------] 3 tests from PmeTest (5268 ms total) +48: [ OK ] PmeTest.ScalesTheBoxWithWalls (1245 ms) +48: [----------] 3 tests from PmeTest (1981 ms total) 48: 48: [----------] 1 test from ReplicaExchangeTerminationTest 48: [ RUN ] ReplicaExchangeTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts @@ -91596,7 +91611,7 @@ 48: Norm of force = 8.77219865482122e+01 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_0_minimize.edr as double precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/0 (1730 ms) +48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/0 (1111 ms) 48: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_1_input.mdp]: @@ -91657,7 +91672,7 @@ 48: Norm of force = 1.84530029253833e+02 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_1_minimize.edr as double precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 (1062 ms) +48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/1 (730 ms) 48: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_2_input.mdp]: @@ -91716,7 +91731,7 @@ 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_2_minimize.edr as double precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 turning H bonds into constraints... 48: This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 (1292 ms) +48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/2 (180 ms) 48: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_3_input.mdp]: @@ -91782,7 +91797,7 @@ 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_3_minimize.edr as double precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 turning H bonds into constraints... 48: This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 (1952 ms) +48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/3 (183 ms) 48: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_4_input.mdp]: @@ -91851,7 +91866,7 @@ 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_4_minimize.edr as double precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 3.000 Last energy frame read 2 time 3.000 turning all bonds into constraints... 48: This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 (212 ms) +48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/4 (28 ms) 48: [ RUN ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_5_input.mdp]: @@ -91927,8 +91942,8 @@ 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWorkWithConstraints_EnergyMinimizationTest_WithinTolerances_5_minimize.edr as double precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 turning all bonds into constraints... 48: This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 (1027 ms) -48: [----------] 6 tests from MinimizersWorkWithConstraints/EnergyMinimizationTest (7275 ms total) +48: [ OK ] MinimizersWorkWithConstraints/EnergyMinimizationTest.WithinTolerances/5 (29 ms) +48: [----------] 6 tests from MinimizersWorkWithConstraints/EnergyMinimizationTest (2261 ms total) 48: 48: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest 48: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 @@ -91977,7 +91992,7 @@ 48: Norm of force = 1.63839399694378e+00 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_0_minimize.edr as double precision energy file 48: Reading energy frame 0 time 0.000 Last energy frame read 0 time 0.000 This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 (1165 ms) +48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/0 (8 ms) 48: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/1 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_1_input.mdp]: @@ -92027,7 +92042,7 @@ 48: Norm of force = 1.05251679559130e+00 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_1_minimize.edr as double precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Last energy frame read 1 time 0.000 This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/1 (76 ms) +48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/1 (9 ms) 48: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/2 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_2_input.mdp]: @@ -92052,7 +92067,7 @@ 48: 48: There was 1 warning 48: This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/2 (6 ms) +48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/2 (4 ms) 48: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_3_input.mdp]: @@ -92110,7 +92125,7 @@ 48: Norm of force = 4.62274878665467e+03 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_3_minimize.edr as double precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 1.000 Reading energy frame 2 time 2.000 Reading energy frame 3 time 3.000 Reading energy frame 4 time 4.000 Last energy frame read 4 time 4.000 This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 (1314 ms) +48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/3 (179 ms) 48: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_4_input.mdp]: @@ -92171,7 +92186,7 @@ 48: Norm of force = 3.61390332564874e+03 48: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_4_minimize.edr as double precision energy file 48: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.000 Reading energy frame 2 time 4.000 Last energy frame read 2 time 4.000 This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 (885 ms) +48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/4 (494 ms) 48: [ RUN ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 48: 48: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MinimizersWork_EnergyMinimizationTest_WithinTolerances_5_input.mdp]: @@ -92204,16 +92219,16 @@ 48: 48: There was 1 warning 48: This run will generate roughly 0 Mb of data -48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 (346 ms) -48: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest (3792 ms total) +48: [ OK ] MinimizersWork/EnergyMinimizationTest.WithinTolerances/5 (217 ms) +48: [----------] 6 tests from MinimizersWork/EnergyMinimizationTest (912 ms total) 48: 48: [----------] Global test environment tear-down -48: [==========] 22 tests from 7 test cases ran. (18170 ms total) +48: [==========] 22 tests from 7 test cases ran. (6371 ms total) 48: [ PASSED ] 22 tests. 48: 48: YOU HAVE 4 DISABLED TESTS 48: -48/54 Test #48: MdrunMpiTests ....................... Passed 18.24 sec +48/54 Test #48: MdrunMpiTests ....................... Passed 6.40 sec test 49 Start 49: MdrunMpiCoordinationTestsOneRank @@ -92269,9 +92284,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.003 0.003 97.8 +49: Time: 0.011 0.011 99.5 49: (ns/day) (hour/ns) -49: Performance: 473.273 0.051 +49: Performance: 128.705 0.186 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -92318,9 +92333,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.010 0.010 99.3 +49: Time: 0.001 0.001 96.8 49: (ns/day) (hour/ns) -49: Performance: 146.873 0.163 +49: Performance: 1051.655 0.023 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -92369,9 +92384,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.002 0.002 96.6 +49: Time: 0.001 0.002 97.1 49: (ns/day) (hour/ns) -49: Performance: 781.702 0.031 +49: Performance: 966.823 0.025 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -92420,9 +92435,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.5 +49: Time: 0.001 0.001 97.3 49: (ns/day) (hour/ns) -49: Performance: 994.928 0.024 +49: Performance: 980.830 0.024 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 49: @@ -92471,9 +92486,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.7 +49: Time: 0.006 0.006 99.0 49: (ns/day) (hour/ns) -49: Performance: 1015.594 0.024 +49: Performance: 259.492 0.092 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 49: @@ -92522,13 +92537,13 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.002 96.2 +49: Time: 0.001 0.001 96.7 49: (ns/day) (hour/ns) -49: Performance: 958.251 0.025 +49: Performance: 1044.877 0.023 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file -49: [ OK ] BasicPropagators/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (305 ms) -49: [----------] 1 test from BasicPropagators/PeriodicActionsTest (305 ms total) +49: [ OK ] BasicPropagators/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (228 ms) +49: [----------] 1 test from BasicPropagators/PeriodicActionsTest (228 ms total) 49: 49: [----------] 18 tests from PropagatorsWithCoupling/PeriodicActionsTest 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 @@ -92578,9 +92593,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.8 +49: Time: 0.001 0.001 96.8 49: (ns/day) (hour/ns) -49: Performance: 1131.007 0.021 +49: Performance: 1165.234 0.021 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -92627,9 +92642,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.3 +49: Time: 0.006 0.006 99.0 49: (ns/day) (hour/ns) -49: Performance: 1095.022 0.022 +49: Performance: 263.645 0.091 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -92678,9 +92693,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.3 +49: Time: 0.010 0.010 99.3 49: (ns/day) (hour/ns) -49: Performance: 1071.780 0.022 +49: Performance: 151.054 0.159 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -92729,9 +92744,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.002 96.6 +49: Time: 0.001 0.001 97.1 49: (ns/day) (hour/ns) -49: Performance: 963.496 0.025 +49: Performance: 1105.634 0.022 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 49: @@ -92780,9 +92795,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.002 0.002 96.3 +49: Time: 0.001 0.001 97.0 49: (ns/day) (hour/ns) -49: Performance: 925.431 0.026 +49: Performance: 1072.527 0.022 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 49: @@ -92831,12 +92846,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.8 +49: Time: 0.002 0.002 96.8 49: (ns/day) (hour/ns) -49: Performance: 1083.848 0.022 +49: Performance: 905.038 0.027 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (94 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (90 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_input.mdp]: @@ -92884,9 +92899,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.0 +49: Time: 0.006 0.006 98.9 49: (ns/day) (hour/ns) -49: Performance: 1067.324 0.022 +49: Performance: 260.424 0.092 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -92933,9 +92948,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.2 +49: Time: 0.001 0.001 96.6 49: (ns/day) (hour/ns) -49: Performance: 1087.292 0.022 +49: Performance: 1207.723 0.020 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -92984,9 +92999,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.0 +49: Time: 0.001 0.001 96.7 49: (ns/day) (hour/ns) -49: Performance: 993.804 0.024 +49: Performance: 1168.550 0.021 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -93035,9 +93050,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.002 96.3 +49: Time: 0.001 0.001 97.0 49: (ns/day) (hour/ns) -49: Performance: 948.367 0.025 +49: Performance: 1086.524 0.022 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file 49: @@ -93086,9 +93101,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.010 0.010 99.3 +49: Time: 0.001 0.001 96.8 49: (ns/day) (hour/ns) -49: Performance: 151.459 0.158 +49: Performance: 1127.901 0.021 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file 49: @@ -93137,12 +93152,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.010 0.010 99.2 +49: Time: 0.001 0.001 96.7 49: (ns/day) (hour/ns) -49: Performance: 152.260 0.158 +49: Performance: 1094.438 0.022 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 (100 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 (49 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_input.mdp]: @@ -93190,9 +93205,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.7 +49: Time: 0.001 0.001 96.8 49: (ns/day) (hour/ns) -49: Performance: 1031.925 0.023 +49: Performance: 1053.453 0.023 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -93239,9 +93254,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.0 +49: Time: 0.001 0.001 96.7 49: (ns/day) (hour/ns) -49: Performance: 1047.186 0.023 +49: Performance: 1149.579 0.021 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -93290,9 +93305,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.0 +49: Time: 0.001 0.001 96.7 49: (ns/day) (hour/ns) -49: Performance: 1094.438 0.022 +49: Performance: 1081.375 0.022 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -93341,9 +93356,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.002 0.002 96.5 +49: Time: 0.001 0.001 96.9 49: (ns/day) (hour/ns) -49: Performance: 931.588 0.026 +49: Performance: 1101.483 0.022 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file 49: @@ -93392,9 +93407,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.8 +49: Time: 0.002 0.002 98.2 49: (ns/day) (hour/ns) -49: Performance: 995.571 0.024 +49: Performance: 590.774 0.041 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file 49: @@ -93443,12 +93458,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.0 +49: Time: 0.003 0.003 97.5 49: (ns/day) (hour/ns) -49: Performance: 1058.339 0.023 +49: Performance: 500.373 0.048 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 (92 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 (47 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_input.mdp]: @@ -93492,9 +93507,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.4 +49: Time: 0.002 0.002 98.0 49: (ns/day) (hour/ns) -49: Performance: 1157.136 0.021 +49: Performance: 654.895 0.037 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -93537,9 +93552,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.002 96.0 +49: Time: 0.001 0.001 96.9 49: (ns/day) (hour/ns) -49: Performance: 951.002 0.025 +49: Performance: 1232.119 0.019 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -93584,9 +93599,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.2 +49: Time: 0.001 0.001 97.0 49: (ns/day) (hour/ns) -49: Performance: 1076.650 0.022 +49: Performance: 1187.241 0.020 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -93631,9 +93646,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.002 0.002 96.7 +49: Time: 0.001 0.001 97.0 49: (ns/day) (hour/ns) -49: Performance: 915.665 0.026 +49: Performance: 1145.092 0.021 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file 49: @@ -93678,9 +93693,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.2 +49: Time: 0.001 0.001 97.0 49: (ns/day) (hour/ns) -49: Performance: 1007.786 0.024 +49: Performance: 1088.444 0.022 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file 49: @@ -93725,12 +93740,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.002 0.002 96.3 +49: Time: 0.001 0.001 97.1 49: (ns/day) (hour/ns) -49: Performance: 897.653 0.027 +49: Performance: 1017.271 0.024 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 (96 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 (45 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_input.mdp]: @@ -93774,9 +93789,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 94.4 +49: Time: 0.003 0.003 98.5 49: (ns/day) (hour/ns) -49: Performance: 1038.711 0.023 +49: Performance: 510.448 0.047 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -93819,9 +93834,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.1 +49: Time: 0.006 0.006 98.8 49: (ns/day) (hour/ns) -49: Performance: 1056.524 0.023 +49: Performance: 263.071 0.091 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -93866,9 +93881,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.1 +49: Time: 0.004 0.004 98.8 49: (ns/day) (hour/ns) -49: Performance: 1025.228 0.023 +49: Performance: 336.259 0.071 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -93913,9 +93928,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.002 0.002 96.4 +49: Time: 0.001 0.001 96.8 49: (ns/day) (hour/ns) -49: Performance: 878.955 0.027 +49: Performance: 1178.159 0.020 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file 49: @@ -93960,9 +93975,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.002 0.002 96.4 +49: Time: 0.001 0.001 96.5 49: (ns/day) (hour/ns) -49: Performance: 942.996 0.025 +49: Performance: 1228.433 0.020 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file 49: @@ -94007,12 +94022,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.7 +49: Time: 0.001 0.001 96.7 49: (ns/day) (hour/ns) -49: Performance: 994.767 0.024 +49: Performance: 1204.417 0.020 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 (96 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 (54 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_input.mdp]: @@ -94056,9 +94071,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.010 0.010 99.2 +49: Time: 0.001 0.001 96.4 49: (ns/day) (hour/ns) -49: Performance: 150.178 0.160 +49: Performance: 1287.750 0.019 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -94101,9 +94116,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.010 0.010 99.2 +49: Time: 0.001 0.001 96.6 49: (ns/day) (hour/ns) -49: Performance: 151.728 0.158 +49: Performance: 1207.486 0.020 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -94148,9 +94163,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.010 0.010 99.3 +49: Time: 0.004 0.004 98.8 49: (ns/day) (hour/ns) -49: Performance: 145.820 0.165 +49: Performance: 396.894 0.060 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -94195,9 +94210,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.006 0.006 98.8 +49: Time: 0.001 0.001 96.8 49: (ns/day) (hour/ns) -49: Performance: 253.533 0.095 +49: Performance: 1059.067 0.023 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file 49: @@ -94242,9 +94257,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.006 0.006 98.8 +49: Time: 0.001 0.001 96.5 49: (ns/day) (hour/ns) -49: Performance: 256.062 0.094 +49: Performance: 1306.318 0.018 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file 49: @@ -94289,12 +94304,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.002 0.002 95.8 +49: Time: 0.001 0.001 95.6 49: (ns/day) (hour/ns) -49: Performance: 888.462 0.027 +49: Performance: 1249.107 0.019 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 (98 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 (53 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_input.mdp]: @@ -94342,9 +94357,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.8 +49: Time: 0.002 0.002 98.3 49: (ns/day) (hour/ns) -49: Performance: 1099.517 0.022 +49: Performance: 647.393 0.037 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -94391,9 +94406,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.1 +49: Time: 0.001 0.001 96.6 49: (ns/day) (hour/ns) -49: Performance: 1053.994 0.023 +49: Performance: 1356.063 0.018 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -94442,9 +94457,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.7 +49: Time: 0.001 0.001 96.7 49: (ns/day) (hour/ns) -49: Performance: 1002.538 0.024 +49: Performance: 1287.750 0.019 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -94493,9 +94508,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.2 +49: Time: 0.001 0.001 96.7 49: (ns/day) (hour/ns) -49: Performance: 1083.086 0.022 +49: Performance: 1351.600 0.018 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file 49: @@ -94544,9 +94559,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.1 +49: Time: 0.001 0.001 96.7 49: (ns/day) (hour/ns) -49: Performance: 1065.478 0.023 +49: Performance: 1257.264 0.019 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file 49: @@ -94595,12 +94610,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.002 96.2 +49: Time: 0.001 0.001 96.7 49: (ns/day) (hour/ns) -49: Performance: 947.784 0.025 +49: Performance: 1306.041 0.018 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 (95 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 (42 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_input.mdp]: @@ -94655,9 +94670,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.5 +49: Time: 0.001 0.001 96.4 49: (ns/day) (hour/ns) -49: Performance: 1015.594 0.024 +49: Performance: 1314.120 0.018 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -94711,9 +94726,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.2 +49: Time: 0.003 0.003 98.3 49: (ns/day) (hour/ns) -49: Performance: 1024.887 0.023 +49: Performance: 539.409 0.044 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -94769,9 +94784,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.1 +49: Time: 0.002 0.002 98.2 49: (ns/day) (hour/ns) -49: Performance: 986.642 0.024 +49: Performance: 597.420 0.040 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -94827,9 +94842,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.5 +49: Time: 0.001 0.001 96.5 49: (ns/day) (hour/ns) -49: Performance: 1046.830 0.023 +49: Performance: 1281.321 0.019 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file 49: @@ -94885,9 +94900,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.8 +49: Time: 0.001 0.001 96.6 49: (ns/day) (hour/ns) -49: Performance: 1014.256 0.024 +49: Performance: 1238.559 0.019 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file 49: @@ -94943,12 +94958,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.002 95.6 +49: Time: 0.001 0.001 96.9 49: (ns/day) (hour/ns) -49: Performance: 974.623 0.025 +49: Performance: 1083.277 0.022 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 (110 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 (42 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/8 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_input.mdp]: @@ -94996,9 +95011,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.6 +49: Time: 0.001 0.001 96.6 49: (ns/day) (hour/ns) -49: Performance: 1048.969 0.023 +49: Performance: 1214.389 0.020 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -95045,9 +95060,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.0 +49: Time: 0.001 0.001 96.5 49: (ns/day) (hour/ns) -49: Performance: 1043.108 0.023 +49: Performance: 1217.509 0.020 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -95096,9 +95111,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.1 +49: Time: 0.002 0.002 97.2 49: (ns/day) (hour/ns) -49: Performance: 1051.834 0.023 +49: Performance: 945.166 0.025 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -95147,9 +95162,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.2 +49: Time: 0.001 0.001 96.5 49: (ns/day) (hour/ns) -49: Performance: 1083.658 0.022 +49: Performance: 1185.185 0.020 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as double precision energy file 49: @@ -95198,9 +95213,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.5 +49: Time: 0.001 0.001 96.7 49: (ns/day) (hour/ns) -49: Performance: 1036.090 0.023 +49: Performance: 1156.268 0.021 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as double precision energy file 49: @@ -95249,12 +95264,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.1 +49: Time: 0.001 0.001 96.6 49: (ns/day) (hour/ns) -49: Performance: 1060.343 0.023 +49: Performance: 1203.241 0.020 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as double precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/8 (92 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/8 (45 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/9 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_input.mdp]: @@ -95298,9 +95313,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.006 26.2 +49: Time: 0.003 0.003 98.6 49: (ns/day) (hour/ns) -49: Performance: 261.275 0.092 +49: Performance: 497.906 0.048 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -95343,9 +95358,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.3 +49: Time: 0.002 0.002 98.3 49: (ns/day) (hour/ns) -49: Performance: 999.772 0.024 +49: Performance: 594.824 0.040 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -95390,9 +95405,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.3 +49: Time: 0.001 0.001 96.9 49: (ns/day) (hour/ns) -49: Performance: 992.843 0.024 +49: Performance: 1272.324 0.019 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -95437,9 +95452,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.2 +49: Time: 0.001 0.001 97.0 49: (ns/day) (hour/ns) -49: Performance: 986.484 0.024 +49: Performance: 1144.454 0.021 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as double precision energy file 49: @@ -95484,9 +95499,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.0 +49: Time: 0.001 0.001 96.8 49: (ns/day) (hour/ns) -49: Performance: 1077.027 0.022 +49: Performance: 1309.650 0.018 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as double precision energy file 49: @@ -95531,12 +95546,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.5 +49: Time: 0.001 0.001 97.0 49: (ns/day) (hour/ns) -49: Performance: 1041.344 0.023 +49: Performance: 1158.224 0.021 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as double precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/9 (100 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/9 (43 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/10 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_input.mdp]: @@ -95580,9 +95595,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.4 +49: Time: 0.001 0.001 96.7 49: (ns/day) (hour/ns) -49: Performance: 1090.371 0.022 +49: Performance: 1213.671 0.020 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -95625,9 +95640,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.0 +49: Time: 0.001 0.001 96.9 49: (ns/day) (hour/ns) -49: Performance: 1005.975 0.024 +49: Performance: 1151.513 0.021 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -95672,9 +95687,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.4 +49: Time: 0.001 0.001 96.6 49: (ns/day) (hour/ns) -49: Performance: 1017.271 0.024 +49: Performance: 1226.965 0.020 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -95719,9 +95734,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.002 95.8 +49: Time: 0.001 0.001 96.7 49: (ns/day) (hour/ns) -49: Performance: 962.292 0.025 +49: Performance: 1210.333 0.020 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as double precision energy file 49: @@ -95766,9 +95781,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.8 +49: Time: 0.003 0.003 98.5 49: (ns/day) (hour/ns) -49: Performance: 1030.372 0.023 +49: Performance: 534.125 0.045 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as double precision energy file 49: @@ -95813,12 +95828,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.1 +49: Time: 0.001 0.001 96.6 49: (ns/day) (hour/ns) -49: Performance: 1100.696 0.022 +49: Performance: 1245.571 0.019 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as double precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/10 (101 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/10 (43 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/11 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_input.mdp]: @@ -95862,9 +95877,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.006 24.7 +49: Time: 0.001 0.001 95.9 49: (ns/day) (hour/ns) -49: Performance: 265.669 0.090 +49: Performance: 1231.872 0.019 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -95907,9 +95922,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.006 0.006 98.5 +49: Time: 0.001 0.001 96.8 49: (ns/day) (hour/ns) -49: Performance: 260.987 0.092 +49: Performance: 1144.241 0.021 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -95954,9 +95969,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.002 95.8 +49: Time: 0.001 0.001 96.9 49: (ns/day) (hour/ns) -49: Performance: 947.638 0.025 +49: Performance: 1152.590 0.021 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -96001,9 +96016,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.002 96.0 +49: Time: 0.001 0.001 96.8 49: (ns/day) (hour/ns) -49: Performance: 947.638 0.025 +49: Performance: 1136.851 0.021 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as double precision energy file 49: @@ -96048,9 +96063,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.3 +49: Time: 0.001 0.001 96.7 49: (ns/day) (hour/ns) -49: Performance: 1023.865 0.023 +49: Performance: 1204.653 0.020 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as double precision energy file 49: @@ -96095,12 +96110,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.006 0.006 98.9 +49: Time: 0.001 0.001 95.8 49: (ns/day) (hour/ns) -49: Performance: 253.418 0.095 +49: Performance: 1143.816 0.021 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as double precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/11 (101 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/11 (43 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/12 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_input.mdp]: @@ -96148,9 +96163,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.006 0.006 99.1 +49: Time: 0.001 0.001 97.6 49: (ns/day) (hour/ns) -49: Performance: 248.091 0.097 +49: Performance: 1126.045 0.021 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -96197,9 +96212,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.006 0.006 99.3 +49: Time: 0.003 0.003 99.2 49: (ns/day) (hour/ns) -49: Performance: 249.467 0.096 +49: Performance: 540.925 0.044 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -96248,9 +96263,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.006 0.006 99.4 +49: Time: 0.003 0.003 99.1 49: (ns/day) (hour/ns) -49: Performance: 252.514 0.095 +49: Performance: 565.659 0.042 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -96299,9 +96314,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.002 0.002 98.4 +49: Time: 0.001 0.001 98.7 49: (ns/day) (hour/ns) -49: Performance: 922.383 0.026 +49: Performance: 1126.457 0.021 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as double precision energy file 49: @@ -96350,9 +96365,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.002 0.002 98.6 +49: Time: 0.001 0.001 98.6 49: (ns/day) (hour/ns) -49: Performance: 855.400 0.028 +49: Performance: 1040.465 0.023 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as double precision energy file 49: @@ -96401,12 +96416,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.002 0.002 98.4 +49: Time: 0.001 0.001 98.6 49: (ns/day) (hour/ns) -49: Performance: 881.975 0.027 +49: Performance: 1003.191 0.024 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as double precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/12 (97 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/12 (43 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/13 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_input.mdp]: @@ -96454,9 +96469,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.002 95.5 +49: Time: 0.001 0.001 96.6 49: (ns/day) (hour/ns) -49: Performance: 971.243 0.025 +49: Performance: 1191.143 0.020 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -96503,9 +96518,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.1 +49: Time: 0.001 0.001 94.9 49: (ns/day) (hour/ns) -49: Performance: 1008.776 0.024 +49: Performance: 1094.438 0.022 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -96554,9 +96569,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.2 +49: Time: 0.001 0.001 96.8 49: (ns/day) (hour/ns) -49: Performance: 1012.423 0.024 +49: Performance: 1102.666 0.022 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -96605,9 +96620,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.1 +49: Time: 0.001 0.001 96.8 49: (ns/day) (hour/ns) -49: Performance: 1043.108 0.023 +49: Performance: 1023.524 0.023 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as double precision energy file 49: @@ -96656,9 +96671,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.002 0.002 95.6 +49: Time: 0.001 0.001 96.9 49: (ns/day) (hour/ns) -49: Performance: 907.571 0.026 +49: Performance: 1023.184 0.023 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as double precision energy file 49: @@ -96707,12 +96722,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.8 +49: Time: 0.001 0.001 96.8 49: (ns/day) (hour/ns) -49: Performance: 1007.951 0.024 +49: Performance: 1122.148 0.021 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as double precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/13 (96 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/13 (46 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/14 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_input.mdp]: @@ -96756,9 +96771,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 98.1 +49: Time: 0.002 0.002 98.5 49: (ns/day) (hour/ns) -49: Performance: 993.164 0.024 +49: Performance: 956.614 0.025 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -96801,9 +96816,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.002 0.002 98.0 +49: Time: 0.001 0.001 98.6 49: (ns/day) (hour/ns) -49: Performance: 859.698 0.028 +49: Performance: 1094.438 0.022 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -96847,10 +96862,13 @@ 49: 49: Writing final coordinates. 49: +49: NOTE: 52 % of the run time was spent in pair search, +49: you might want to increase nstlist (this has no effect on accuracy) +49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.002 0.002 98.4 +49: Time: 0.003 0.003 99.2 49: (ns/day) (hour/ns) -49: Performance: 879.833 0.027 +49: Performance: 472.837 0.051 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -96894,10 +96912,13 @@ 49: 49: Writing final coordinates. 49: +49: NOTE: 29 % of the run time was spent in pair search, +49: you might want to increase nstlist (this has no effect on accuracy) +49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.002 0.002 98.5 +49: Time: 0.003 0.003 99.2 49: (ns/day) (hour/ns) -49: Performance: 897.915 0.027 +49: Performance: 524.038 0.046 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as double precision energy file 49: @@ -96942,9 +96963,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.002 0.002 98.5 +49: Time: 0.003 0.003 99.2 49: (ns/day) (hour/ns) -49: Performance: 937.828 0.026 +49: Performance: 544.992 0.044 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as double precision energy file 49: @@ -96989,12 +97010,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 98.5 +49: Time: 0.001 0.001 98.7 49: (ns/day) (hour/ns) -49: Performance: 1010.265 0.024 +49: Performance: 1122.557 0.021 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as double precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/14 (97 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/14 (43 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/15 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_input.mdp]: @@ -97038,9 +97059,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.1 +49: Time: 0.001 0.001 96.5 49: (ns/day) (hour/ns) -49: Performance: 1066.954 0.022 +49: Performance: 1202.536 0.020 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -97083,9 +97104,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.002 0.002 96.6 +49: Time: 0.001 0.001 96.7 49: (ns/day) (hour/ns) -49: Performance: 900.803 0.027 +49: Performance: 1155.617 0.021 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -97130,9 +97151,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.002 0.002 95.7 +49: Time: 0.001 0.001 96.7 49: (ns/day) (hour/ns) -49: Performance: 905.171 0.027 +49: Performance: 1134.548 0.021 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -97177,9 +97198,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.002 0.002 96.0 +49: Time: 0.001 0.001 96.7 49: (ns/day) (hour/ns) -49: Performance: 887.055 0.027 +49: Performance: 1224.283 0.020 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as double precision energy file 49: @@ -97224,9 +97245,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.006 0.006 98.8 +49: Time: 0.001 0.001 96.4 49: (ns/day) (hour/ns) -49: Performance: 261.153 0.092 +49: Performance: 1175.013 0.020 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as double precision energy file 49: @@ -97271,12 +97292,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.006 0.006 98.6 +49: Time: 0.001 0.001 96.6 49: (ns/day) (hour/ns) -49: Performance: 247.971 0.097 +49: Performance: 1259.320 0.019 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as double precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/15 (102 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/15 (42 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/16 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_input.mdp]: @@ -97320,9 +97341,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.006 0.006 98.8 +49: Time: 0.003 0.003 98.5 49: (ns/day) (hour/ns) -49: Performance: 248.141 0.097 +49: Performance: 539.032 0.045 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -97365,9 +97386,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.006 0.006 98.9 +49: Time: 0.001 0.001 97.1 49: (ns/day) (hour/ns) -49: Performance: 245.628 0.098 +49: Performance: 1190.223 0.020 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -97412,9 +97433,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.002 0.002 96.5 +49: Time: 0.001 0.001 97.2 49: (ns/day) (hour/ns) -49: Performance: 904.772 0.027 +49: Performance: 1102.074 0.022 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -97459,9 +97480,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.002 0.002 96.4 +49: Time: 0.001 0.001 97.2 49: (ns/day) (hour/ns) -49: Performance: 905.570 0.027 +49: Performance: 1099.713 0.022 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as double precision energy file 49: @@ -97506,9 +97527,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.002 0.002 93.4 +49: Time: 0.001 0.001 97.2 49: (ns/day) (hour/ns) -49: Performance: 799.247 0.030 +49: Performance: 1090.371 0.022 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as double precision energy file 49: @@ -97553,12 +97574,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.002 0.002 96.5 +49: Time: 0.001 0.002 97.5 49: (ns/day) (hour/ns) -49: Performance: 869.649 0.028 +49: Performance: 958.251 0.025 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as double precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/16 (103 ms) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/16 (42 ms) 49: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/17 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_input.mdp]: @@ -97602,9 +97623,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.006 0.006 98.7 +49: Time: 0.001 0.001 97.2 49: (ns/day) (hour/ns) -49: Performance: 244.575 0.098 +49: Performance: 1014.925 0.024 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -97647,9 +97668,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.006 0.006 98.8 +49: Time: 0.001 0.001 97.3 49: (ns/day) (hour/ns) -49: Performance: 243.021 0.099 +49: Performance: 1005.811 0.024 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -97694,9 +97715,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.006 0.006 99.0 +49: Time: 0.002 0.002 97.4 49: (ns/day) (hour/ns) -49: Performance: 237.769 0.101 +49: Performance: 922.935 0.026 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -97741,9 +97762,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.002 0.002 96.8 +49: Time: 0.003 0.003 98.5 49: (ns/day) (hour/ns) -49: Performance: 763.678 0.031 +49: Performance: 499.926 0.048 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as double precision energy file 49: @@ -97788,9 +97809,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.002 0.002 95.8 +49: Time: 0.003 0.003 98.4 49: (ns/day) (hour/ns) -49: Performance: 788.203 0.030 +49: Performance: 548.632 0.044 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as double precision energy file 49: @@ -97835,13 +97856,13 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.006 0.006 98.8 +49: Time: 0.001 0.001 97.2 49: (ns/day) (hour/ns) -49: Performance: 248.211 0.097 +49: Performance: 989.018 0.024 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as double precision energy file -49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/17 (108 ms) -49: [----------] 18 tests from PropagatorsWithCoupling/PeriodicActionsTest (1778 ms total) +49: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/17 (44 ms) +49: [----------] 18 tests from PropagatorsWithCoupling/PeriodicActionsTest (857 ms total) 49: 49: [----------] 8 tests from PropagatorsWithConstraints/PeriodicActionsTest 49: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 @@ -97899,9 +97920,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.2 +49: Time: 0.002 0.002 96.5 49: (ns/day) (hour/ns) -49: Performance: 1013.589 0.024 +49: Performance: 908.106 0.026 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -97956,9 +97977,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.002 0.002 96.1 +49: Time: 0.006 0.006 98.6 49: (ns/day) (hour/ns) -49: Performance: 876.329 0.027 +49: Performance: 248.121 0.097 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -98015,9 +98036,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.010 0.010 99.4 +49: Time: 0.002 0.002 96.8 49: (ns/day) (hour/ns) -49: Performance: 151.832 0.158 +49: Performance: 934.131 0.026 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -98074,9 +98095,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.010 0.010 99.3 +49: Time: 0.001 0.001 96.7 49: (ns/day) (hour/ns) -49: Performance: 148.659 0.161 +49: Performance: 992.204 0.024 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 49: @@ -98133,9 +98154,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.010 0.010 99.3 +49: Time: 0.001 0.001 97.0 49: (ns/day) (hour/ns) -49: Performance: 149.319 0.161 +49: Performance: 1031.752 0.023 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 49: @@ -98192,12 +98213,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.1 +49: Time: 0.001 0.001 96.9 49: (ns/day) (hour/ns) -49: Performance: 1048.433 0.023 +49: Performance: 1062.538 0.023 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file -49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (8714 ms) +49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (5155 ms) 49: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_input.mdp]: @@ -98253,9 +98274,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.7 +49: Time: 0.001 0.001 96.3 49: (ns/day) (hour/ns) -49: Performance: 1068.620 0.022 +49: Performance: 979.427 0.025 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -98310,9 +98331,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.002 0.002 97.1 +49: Time: 0.001 0.001 96.6 49: (ns/day) (hour/ns) -49: Performance: 664.860 0.036 +49: Performance: 1046.652 0.023 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -98369,9 +98390,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.010 0.010 99.3 +49: Time: 0.001 0.001 96.7 49: (ns/day) (hour/ns) -49: Performance: 147.091 0.163 +49: Performance: 1034.177 0.023 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -98428,9 +98449,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.9 +49: Time: 0.003 0.003 97.8 49: (ns/day) (hour/ns) -49: Performance: 1049.326 0.023 +49: Performance: 485.201 0.049 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file 49: @@ -98487,9 +98508,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.010 0.010 99.2 +49: Time: 0.002 0.002 96.6 49: (ns/day) (hour/ns) -49: Performance: 150.479 0.159 +49: Performance: 934.131 0.026 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file 49: @@ -98546,12 +98567,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.0 +49: Time: 0.001 0.002 96.7 49: (ns/day) (hour/ns) -49: Performance: 1037.486 0.023 +49: Performance: 973.853 0.025 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file -49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 (7817 ms) +49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 (5431 ms) 49: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_input.mdp]: @@ -98603,9 +98624,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.003 0.003 98.0 +49: Time: 0.001 0.001 96.8 49: (ns/day) (hour/ns) -49: Performance: 436.241 0.055 +49: Performance: 1046.830 0.023 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -98656,9 +98677,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.1 +49: Time: 0.003 0.003 98.4 49: (ns/day) (hour/ns) -49: Performance: 1134.130 0.021 +49: Performance: 464.635 0.052 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -98711,9 +98732,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.002 96.1 +49: Time: 0.003 0.003 98.4 49: (ns/day) (hour/ns) -49: Performance: 947.784 0.025 +49: Performance: 444.487 0.054 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -98766,9 +98787,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.002 0.002 96.1 +49: Time: 0.001 0.001 96.6 49: (ns/day) (hour/ns) -49: Performance: 899.619 0.027 +49: Performance: 1054.174 0.023 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file 49: @@ -98821,9 +98842,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.003 0.003 98.4 +49: Time: 0.002 0.002 96.5 49: (ns/day) (hour/ns) -49: Performance: 452.353 0.053 +49: Performance: 912.816 0.026 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file 49: @@ -98876,12 +98897,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.003 0.003 98.3 +49: Time: 0.001 0.001 96.8 49: (ns/day) (hour/ns) -49: Performance: 460.571 0.052 +49: Performance: 1007.951 0.024 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file -49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 (6160 ms) +49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 (4212 ms) 49: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_input.mdp]: @@ -98933,9 +98954,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.9 +49: Time: 0.002 0.002 96.7 49: (ns/day) (hour/ns) -49: Performance: 1045.231 0.023 +49: Performance: 933.282 0.026 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -98986,9 +99007,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.8 +49: Time: 0.002 0.002 96.2 49: (ns/day) (hour/ns) -49: Performance: 1064.925 0.023 +49: Performance: 670.577 0.036 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -99041,9 +99062,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 96.2 +49: Time: 0.002 0.002 95.4 49: (ns/day) (hour/ns) -49: Performance: 1017.943 0.024 +49: Performance: 752.945 0.032 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -99098,7 +99119,7 @@ 49: Core t (s) Wall t (s) (%) 49: Time: 0.002 0.002 95.8 49: (ns/day) (hour/ns) -49: Performance: 899.751 0.027 +49: Performance: 736.297 0.033 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file 49: @@ -99151,9 +99172,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.006 0.006 98.7 +49: Time: 0.007 0.007 98.7 49: (ns/day) (hour/ns) -49: Performance: 254.949 0.094 +49: Performance: 220.226 0.109 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file 49: @@ -99206,12 +99227,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.002 0.002 95.5 +49: Time: 0.004 0.005 98.0 49: (ns/day) (hour/ns) -49: Performance: 918.532 0.026 +49: Performance: 320.931 0.075 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file -49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 (6723 ms) +49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 (7404 ms) 49: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_input.mdp]: @@ -99263,9 +99284,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.002 95.8 +49: Time: 0.010 0.010 99.2 49: (ns/day) (hour/ns) -49: Performance: 966.823 0.025 +49: Performance: 144.439 0.166 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -99318,7 +99339,7 @@ 49: Core t (s) Wall t (s) (%) 49: Time: 0.002 0.002 95.9 49: (ns/day) (hour/ns) -49: Performance: 791.850 0.030 +49: Performance: 832.513 0.029 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -99370,13 +99391,10 @@ 49: 49: Writing final coordinates. 49: -49: NOTE: 84 % of the run time was spent in pair search, -49: you might want to increase nstlist (this has no effect on accuracy) -49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.010 0.010 99.2 +49: Time: 0.002 0.002 96.4 49: (ns/day) (hour/ns) -49: Performance: 152.324 0.158 +49: Performance: 802.265 0.030 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -99429,9 +99447,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.013 0.013 99.3 +49: Time: 0.014 0.014 99.4 49: (ns/day) (hour/ns) -49: Performance: 116.501 0.206 +49: Performance: 103.606 0.232 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file 49: @@ -99484,9 +99502,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.004 0.004 98.5 +49: Time: 0.002 0.002 96.0 49: (ns/day) (hour/ns) -49: Performance: 399.805 0.060 +49: Performance: 799.973 0.030 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file 49: @@ -99539,12 +99557,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.002 0.002 97.0 +49: Time: 0.002 0.002 96.1 49: (ns/day) (hour/ns) -49: Performance: 823.609 0.029 +49: Performance: 795.018 0.030 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file -49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 (7777 ms) +49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 (10145 ms) 49: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_input.mdp]: @@ -99596,9 +99614,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.001 95.7 +49: Time: 0.014 0.014 99.4 49: (ns/day) (hour/ns) -49: Performance: 1010.762 0.024 +49: Performance: 103.820 0.231 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -99649,9 +99667,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.001 0.002 96.1 +49: Time: 0.002 0.002 97.0 49: (ns/day) (hour/ns) -49: Performance: 948.075 0.025 +49: Performance: 849.737 0.028 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -99704,9 +99722,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.010 0.010 99.2 +49: Time: 0.002 0.002 96.9 49: (ns/day) (hour/ns) -49: Performance: 145.986 0.164 +49: Performance: 925.431 0.026 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -99759,9 +99777,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.010 0.010 99.2 +49: Time: 0.006 0.006 99.0 49: (ns/day) (hour/ns) -49: Performance: 147.432 0.163 +49: Performance: 246.246 0.097 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file 49: @@ -99814,9 +99832,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.002 0.002 96.0 +49: Time: 0.002 0.002 96.9 49: (ns/day) (hour/ns) -49: Performance: 873.100 0.027 +49: Performance: 910.388 0.026 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file 49: @@ -99869,12 +99887,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.002 0.002 96.5 +49: Time: 0.002 0.002 96.8 49: (ns/day) (hour/ns) -49: Performance: 813.817 0.029 +49: Performance: 873.348 0.027 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file -49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 (8198 ms) +49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 (12327 ms) 49: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_input.mdp]: @@ -99930,9 +99948,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.010 0.010 99.6 +49: Time: 0.002 0.002 98.7 49: (ns/day) (hour/ns) -49: Performance: 144.829 0.166 +49: Performance: 828.037 0.029 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -99987,9 +100005,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.002 0.002 98.8 +49: Time: 0.004 0.004 99.0 49: (ns/day) (hour/ns) -49: Performance: 916.210 0.026 +49: Performance: 328.863 0.073 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -100046,9 +100064,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.006 0.006 99.5 +49: Time: 0.010 0.010 99.6 49: (ns/day) (hour/ns) -49: Performance: 243.704 0.098 +49: Performance: 140.920 0.170 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -100107,7 +100125,7 @@ 49: Core t (s) Wall t (s) (%) 49: Time: 0.002 0.002 98.4 49: (ns/day) (hour/ns) -49: Performance: 831.951 0.029 +49: Performance: 796.663 0.030 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file 49: @@ -100164,9 +100182,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.014 0.014 99.8 +49: Time: 0.010 0.010 99.6 49: (ns/day) (hour/ns) -49: Performance: 104.956 0.229 +49: Performance: 140.265 0.171 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file 49: @@ -100223,12 +100241,12 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.002 0.002 98.4 +49: Time: 0.015 0.015 99.7 49: (ns/day) (hour/ns) -49: Performance: 771.328 0.031 +49: Performance: 100.470 0.239 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file -49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 (8000 ms) +49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 (10546 ms) 49: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_input.mdp]: @@ -100280,9 +100298,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.002 0.002 98.8 +49: Time: 0.002 0.002 98.4 49: (ns/day) (hour/ns) -49: Performance: 629.017 0.038 +49: Performance: 870.878 0.028 49: 49: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_input.mdp]: 49: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -100333,9 +100351,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.010 0.010 99.5 +49: Time: 0.015 0.015 99.7 49: (ns/day) (hour/ns) -49: Performance: 145.986 0.164 +49: Performance: 101.010 0.238 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -100388,9 +100406,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.002 0.002 98.4 +49: Time: 0.002 0.002 98.6 49: (ns/day) (hour/ns) -49: Performance: 864.402 0.028 +49: Performance: 782.298 0.031 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file 49: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -100443,9 +100461,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.010 0.010 99.7 +49: Time: 0.002 0.002 98.3 49: (ns/day) (hour/ns) -49: Performance: 148.362 0.162 +49: Performance: 620.340 0.039 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file 49: @@ -100498,9 +100516,9 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.002 0.002 98.6 +49: Time: 0.011 0.011 99.6 49: (ns/day) (hour/ns) -49: Performance: 804.360 0.030 +49: Performance: 137.363 0.175 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file 49: @@ -100553,18 +100571,18 @@ 49: Writing final coordinates. 49: 49: Core t (s) Wall t (s) (%) -49: Time: 0.014 0.014 99.7 +49: Time: 0.002 0.002 98.3 49: (ns/day) (hour/ns) -49: Performance: 102.173 0.235 +49: Performance: 651.915 0.037 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 49: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file -49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 (9387 ms) -49: [----------] 8 tests from PropagatorsWithConstraints/PeriodicActionsTest (62777 ms total) +49: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 (12166 ms) +49: [----------] 8 tests from PropagatorsWithConstraints/PeriodicActionsTest (67386 ms total) 49: 49: [----------] Global test environment tear-down -49: [==========] 27 tests from 3 test cases ran. (64860 ms total) +49: [==========] 27 tests from 3 test cases ran. (68471 ms total) 49: [ PASSED ] 27 tests. -49/54 Test #49: MdrunMpiCoordinationTestsOneRank .... Passed 64.93 sec +49/54 Test #49: MdrunMpiCoordinationTestsOneRank .... Passed 68.50 sec test 50 Start 50: MdrunMpiCoordinationTestsTwoRanks @@ -100623,29 +100641,19 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was turned on during the run due to measured imbalance. -50: Average load imbalance: 93.0%. -50: The balanceable part of the MD step is 26%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 24.1%. -50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % -50: -50: NOTE: 24.1 % of the available CPU time was lost due to load imbalance -50: in the domain decomposition. -50: You can consider manually changing the decomposition (option -dd); -50: e.g. by using fewer domains along the box dimension in which there is -50: considerable inhomogeneity in the simulated system. +50: DLB was off during the run due to low measured imbalance. +50: Average load imbalance: 2.5%. +50: The balanceable part of the MD step is 46%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.2%. 50: -50: NOTE: 28 % of the run time was spent in domain decomposition, -50: 0 % of the run time was spent in pair search, -50: you might want to increase nstlist (this has no effect on accuracy) 50: -50: NOTE: 12 % of the run time was spent communicating energies, +50: NOTE: 77 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.394 0.223 176.7 +50: Time: 0.058 0.035 165.7 50: (ns/day) (hour/ns) -50: Performance: 6.593 3.640 +50: Performance: 41.888 0.573 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -100695,20 +100703,19 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was turned on during the run due to measured imbalance. -50: Average load imbalance: 5.5%. -50: The balanceable part of the MD step is 49%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 2.7%. -50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % +50: DLB was off during the run due to low measured imbalance. +50: Average load imbalance: 2.8%. +50: The balanceable part of the MD step is 45%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.3%. 50: 50: 50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 193.0 +50: Time: 0.004 0.002 193.1 50: (ns/day) (hour/ns) -50: Performance: 688.527 0.035 +50: Performance: 791.443 0.030 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -100761,18 +100768,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 4.0%. -50: The balanceable part of the MD step is 46%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.8%. +50: Average load imbalance: 2.4%. +50: The balanceable part of the MD step is 47%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.1%. 50: 50: -50: NOTE: 29 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 190.8 +50: Time: 0.004 0.002 193.0 50: (ns/day) (hour/ns) -50: Performance: 786.693 0.031 +50: Performance: 754.743 0.032 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -100825,18 +100832,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.0%. -50: The balanceable part of the MD step is 49%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.0%. +50: Average load imbalance: 4.0%. +50: The balanceable part of the MD step is 46%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.8%. 50: 50: 50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 191.8 +50: Time: 0.004 0.002 193.9 50: (ns/day) (hour/ns) -50: Performance: 754.512 0.032 +50: Performance: 750.697 0.032 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 50: @@ -100889,18 +100896,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.7%. -50: The balanceable part of the MD step is 47%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.8%. +50: Average load imbalance: 1.9%. +50: The balanceable part of the MD step is 48%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.9%. 50: 50: -50: NOTE: 30 % of the run time was spent communicating energies, +50: NOTE: 32 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 191.0 +50: Time: 0.004 0.002 193.6 50: (ns/day) (hour/ns) -50: Performance: 752.761 0.032 +50: Performance: 747.056 0.032 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 50: @@ -100953,22 +100960,22 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 0.8%. -50: The balanceable part of the MD step is 49%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.4%. +50: Average load imbalance: 2.3%. +50: The balanceable part of the MD step is 46%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.0%. 50: 50: -50: NOTE: 30 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 191.6 +50: Time: 0.004 0.002 193.6 50: (ns/day) (hour/ns) -50: Performance: 815.919 0.029 +50: Performance: 761.319 0.032 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BasicPropagators_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file -50: [ OK ] BasicPropagators/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (902 ms) -50: [----------] 1 test from BasicPropagators/PeriodicActionsTest (902 ms total) +50: [ OK ] BasicPropagators/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (780 ms) +50: [----------] 1 test from BasicPropagators/PeriodicActionsTest (780 ms total) 50: 50: [----------] 18 tests from PropagatorsWithCoupling/PeriodicActionsTest 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 @@ -101021,19 +101028,20 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.3%. -50: The balanceable part of the MD step is 50%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.7%. +50: DLB was turned on during the run due to measured imbalance. +50: Average load imbalance: 5.2%. +50: The balanceable part of the MD step is 47%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 2.4%. +50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % 50: 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 191.0 +50: Time: 0.004 0.002 193.3 50: (ns/day) (hour/ns) -50: Performance: 751.292 0.032 +50: Performance: 769.737 0.031 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -101084,18 +101092,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.6%. -50: The balanceable part of the MD step is 49%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.2%. +50: Average load imbalance: 4.3%. +50: The balanceable part of the MD step is 45%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 2.0%. 50: 50: -50: NOTE: 28 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 192.6 +50: Time: 0.004 0.002 193.5 50: (ns/day) (hour/ns) -50: Performance: 859.098 0.028 +50: Performance: 768.681 0.031 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -101148,18 +101156,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.1%. -50: The balanceable part of the MD step is 48%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.0%. +50: Average load imbalance: 0.6%. +50: The balanceable part of the MD step is 46%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.3%. 50: 50: 50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 191.1 +50: Time: 0.004 0.002 193.3 50: (ns/day) (hour/ns) -50: Performance: 803.416 0.030 +50: Performance: 802.788 0.030 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -101212,18 +101220,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.9%. -50: The balanceable part of the MD step is 49%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.4%. +50: Average load imbalance: 2.6%. +50: The balanceable part of the MD step is 44%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.1%. 50: 50: -50: NOTE: 28 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 192.0 +50: Time: 0.004 0.002 193.6 50: (ns/day) (hour/ns) -50: Performance: 885.143 0.027 +50: Performance: 733.579 0.033 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 50: @@ -101276,18 +101284,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 3.8%. -50: The balanceable part of the MD step is 49%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.9%. +50: Average load imbalance: 1.9%. +50: The balanceable part of the MD step is 46%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.9%. 50: 50: -50: NOTE: 29 % of the run time was spent communicating energies, +50: NOTE: 32 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 192.2 +50: Time: 0.004 0.002 193.2 50: (ns/day) (hour/ns) -50: Performance: 890.066 0.027 +50: Performance: 681.670 0.035 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 50: @@ -101339,23 +101347,22 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was turned on during the run due to measured imbalance. -50: Average load imbalance: 4.4%. -50: The balanceable part of the MD step is 49%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 2.2%. -50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % +50: DLB was off during the run due to low measured imbalance. +50: Average load imbalance: 1.9%. +50: The balanceable part of the MD step is 46%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.9%. 50: 50: -50: NOTE: 29 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 192.3 +50: Time: 0.004 0.002 193.0 50: (ns/day) (hour/ns) -50: Performance: 914.510 0.026 +50: Performance: 786.492 0.031 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (244 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (752 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_input.mdp]: @@ -101407,18 +101414,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 4.1%. -50: The balanceable part of the MD step is 47%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.9%. +50: Average load imbalance: 4.4%. +50: The balanceable part of the MD step is 45%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 2.0%. 50: 50: 50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 190.1 +50: Time: 0.004 0.002 193.0 50: (ns/day) (hour/ns) -50: Performance: 819.337 0.029 +50: Performance: 723.074 0.033 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -101469,18 +101476,15 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.7%. -50: The balanceable part of the MD step is 49%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.9%. -50: +50: Average load imbalance: 1.4%. +50: The balanceable part of the MD step is 47%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.7%. 50: -50: NOTE: 30 % of the run time was spent communicating energies, -50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 190.8 +50: Time: 0.093 0.046 199.6 50: (ns/day) (hour/ns) -50: Performance: 805.148 0.030 +50: Performance: 31.646 0.758 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -101533,18 +101537,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.5%. -50: The balanceable part of the MD step is 49%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.2%. +50: Average load imbalance: 1.1%. +50: The balanceable part of the MD step is 46%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.5%. 50: 50: -50: NOTE: 30 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 190.0 +50: Time: 0.004 0.002 191.9 50: (ns/day) (hour/ns) -50: Performance: 897.065 0.027 +50: Performance: 780.761 0.031 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -101596,19 +101600,20 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.4%. -50: The balanceable part of the MD step is 47%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.7%. +50: DLB was turned on during the run due to measured imbalance. +50: Average load imbalance: 4.5%. +50: The balanceable part of the MD step is 49%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 2.2%. +50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % 50: 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 190.8 +50: Time: 0.004 0.002 193.2 50: (ns/day) (hour/ns) -50: Performance: 748.781 0.032 +50: Performance: 762.214 0.031 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file 50: @@ -101661,18 +101666,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 3.7%. -50: The balanceable part of the MD step is 48%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.8%. +50: Average load imbalance: 3.3%. +50: The balanceable part of the MD step is 46%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.5%. 50: 50: -50: NOTE: 28 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 192.1 +50: Time: 0.004 0.002 191.3 50: (ns/day) (hour/ns) -50: Performance: 650.950 0.037 +50: Performance: 752.899 0.032 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file 50: @@ -101725,21 +101730,21 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 4.1%. -50: The balanceable part of the MD step is 47%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.9%. +50: Average load imbalance: 1.9%. +50: The balanceable part of the MD step is 46%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.9%. 50: 50: -50: NOTE: 29 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 191.8 +50: Time: 0.004 0.002 190.5 50: (ns/day) (hour/ns) -50: Performance: 861.863 0.028 +50: Performance: 729.669 0.033 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 (308 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 (744 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_input.mdp]: @@ -101790,19 +101795,20 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.0%. -50: The balanceable part of the MD step is 48%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.0%. +50: DLB was turned on during the run due to measured imbalance. +50: Average load imbalance: 9.6%. +50: The balanceable part of the MD step is 47%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 4.5%. +50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % 50: 50: -50: NOTE: 30 % of the run time was spent communicating energies, +50: NOTE: 28 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 190.2 +50: Time: 0.005 0.002 190.7 50: (ns/day) (hour/ns) -50: Performance: 763.300 0.031 +50: Performance: 603.861 0.040 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -101852,19 +101858,20 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.0%. -50: The balanceable part of the MD step is 49%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.0%. +50: DLB was turned on during the run due to measured imbalance. +50: Average load imbalance: 4.5%. +50: The balanceable part of the MD step is 48%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 2.2%. +50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % 50: 50: -50: NOTE: 28 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 191.6 +50: Time: 0.004 0.002 190.9 50: (ns/day) (hour/ns) -50: Performance: 834.995 0.029 +50: Performance: 672.077 0.036 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -101917,18 +101924,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.0%. -50: The balanceable part of the MD step is 50%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.0%. +50: Average load imbalance: 2.3%. +50: The balanceable part of the MD step is 47%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.1%. 50: 50: -50: NOTE: 92 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.043 0.029 145.9 +50: Time: 0.004 0.002 189.9 50: (ns/day) (hour/ns) -50: Performance: 50.112 0.479 +50: Performance: 693.839 0.035 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -101981,18 +101988,19 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.1%. -50: The balanceable part of the MD step is 5%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.1%. +50: Average load imbalance: 7.8%. +50: The balanceable part of the MD step is 0%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.0%. 50: 50: -50: NOTE: 5 % of the run time was spent communicating energies, -50: you might want to increase some nst* mdp options +50: NOTE: 53 % of the run time was spent in domain decomposition, +50: 0 % of the run time was spent in pair search, +50: you might want to increase nstlist (this has no effect on accuracy) 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.020 0.010 198.4 +50: Time: 0.212 0.106 199.8 50: (ns/day) (hour/ns) -50: Performance: 145.949 0.164 +50: Performance: 13.822 1.736 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file 50: @@ -102045,18 +102053,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.7%. -50: The balanceable part of the MD step is 49%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.3%. +50: Average load imbalance: 4.2%. +50: The balanceable part of the MD step is 46%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 2.0%. 50: 50: -50: NOTE: 29 % of the run time was spent communicating energies, +50: NOTE: 74 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 191.0 +50: Time: 0.044 0.022 198.5 50: (ns/day) (hour/ns) -50: Performance: 752.163 0.032 +50: Performance: 66.789 0.359 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file 50: @@ -102109,21 +102117,21 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.6%. -50: The balanceable part of the MD step is 49%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.3%. +50: Average load imbalance: 2.3%. +50: The balanceable part of the MD step is 48%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.1%. 50: 50: 50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 190.4 +50: Time: 0.004 0.002 191.9 50: (ns/day) (hour/ns) -50: Performance: 838.233 0.029 +50: Performance: 714.728 0.034 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 (404 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 (1472 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_input.mdp]: @@ -102168,13 +102176,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 33 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 191.2 +50: Time: 0.004 0.002 191.5 50: (ns/day) (hour/ns) -50: Performance: 835.278 0.029 +50: Performance: 764.010 0.031 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -102218,13 +102226,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 32 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 191.5 +50: Time: 0.005 0.002 191.3 50: (ns/day) (hour/ns) -50: Performance: 850.617 0.028 +50: Performance: 610.322 0.039 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -102274,9 +102282,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 192.5 +50: Time: 0.004 0.002 191.8 50: (ns/day) (hour/ns) -50: Performance: 857.424 0.028 +50: Performance: 731.619 0.033 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -102322,13 +102330,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 36 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 191.4 +50: Time: 0.005 0.003 192.4 50: (ns/day) (hour/ns) -50: Performance: 788.758 0.030 +50: Performance: 543.262 0.044 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file 50: @@ -102374,13 +102382,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 32 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 191.1 +50: Time: 0.004 0.002 190.8 50: (ns/day) (hour/ns) -50: Performance: 932.364 0.026 +50: Performance: 716.723 0.033 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file 50: @@ -102426,16 +102434,16 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 32 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 190.8 +50: Time: 0.004 0.002 190.6 50: (ns/day) (hour/ns) -50: Performance: 897.392 0.027 +50: Performance: 706.814 0.034 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 (407 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 (924 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_input.mdp]: @@ -102480,13 +102488,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 190.4 +50: Time: 0.004 0.002 187.5 50: (ns/day) (hour/ns) -50: Performance: 986.563 0.024 +50: Performance: 676.617 0.035 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -102530,13 +102538,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 32 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 190.2 +50: Time: 0.004 0.002 189.2 50: (ns/day) (hour/ns) -50: Performance: 894.980 0.027 +50: Performance: 682.728 0.035 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -102582,10 +102590,13 @@ 50: 50: Writing final coordinates. 50: +50: NOTE: 32 % of the run time was spent communicating energies, +50: you might want to increase some nst* mdp options +50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.028 0.014 198.6 +50: Time: 0.004 0.002 190.7 50: (ns/day) (hour/ns) -50: Performance: 104.050 0.231 +50: Performance: 654.755 0.037 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -102635,9 +102646,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 190.4 +50: Time: 0.004 0.002 189.7 50: (ns/day) (hour/ns) -50: Performance: 903.578 0.027 +50: Performance: 659.698 0.036 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file 50: @@ -102683,13 +102694,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 33 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 189.7 +50: Time: 0.004 0.002 188.9 50: (ns/day) (hour/ns) -50: Performance: 852.088 0.028 +50: Performance: 706.126 0.034 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file 50: @@ -102735,16 +102746,16 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 33 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 190.8 +50: Time: 0.004 0.002 189.2 50: (ns/day) (hour/ns) -50: Performance: 958.623 0.025 +50: Performance: 671.674 0.036 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 (369 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 (764 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_input.mdp]: @@ -102789,13 +102800,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 30 % of the run time was spent communicating energies, +50: NOTE: 32 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 191.0 +50: Time: 0.004 0.002 189.3 50: (ns/day) (hour/ns) -50: Performance: 881.218 0.027 +50: Performance: 691.852 0.035 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -102839,13 +102850,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 29 % of the run time was spent communicating energies, +50: NOTE: 32 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 191.1 +50: Time: 0.004 0.002 190.3 50: (ns/day) (hour/ns) -50: Performance: 928.639 0.026 +50: Performance: 703.947 0.034 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -102891,13 +102902,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 34 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 186.7 +50: Time: 0.005 0.002 190.2 50: (ns/day) (hour/ns) -50: Performance: 837.208 0.029 +50: Performance: 588.011 0.041 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -102943,13 +102954,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 30 % of the run time was spent communicating energies, +50: NOTE: 32 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 190.8 +50: Time: 0.007 0.022 32.4 50: (ns/day) (hour/ns) -50: Performance: 849.854 0.028 +50: Performance: 67.748 0.354 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file 50: @@ -102995,13 +103006,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 32 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 190.4 +50: Time: 0.004 0.002 192.8 50: (ns/day) (hour/ns) -50: Performance: 834.373 0.029 +50: Performance: 792.156 0.030 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file 50: @@ -103047,16 +103058,16 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 30 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 190.7 +50: Time: 0.004 0.002 193.0 50: (ns/day) (hour/ns) -50: Performance: 965.989 0.025 +50: Performance: 787.548 0.030 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 (400 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 (468 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_input.mdp]: @@ -103109,9 +103120,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 191.2 +50: Time: 0.003 0.002 193.3 50: (ns/day) (hour/ns) -50: Performance: 985.853 0.024 +50: Performance: 825.208 0.029 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -103159,13 +103170,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 34 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 190.5 +50: Time: 0.003 0.002 193.5 50: (ns/day) (hour/ns) -50: Performance: 893.811 0.027 +50: Performance: 821.632 0.029 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -103215,13 +103226,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 191.7 +50: Time: 0.004 0.002 193.7 50: (ns/day) (hour/ns) -50: Performance: 923.005 0.026 +50: Performance: 765.196 0.031 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -103271,13 +103282,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 30 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 191.0 +50: Time: 0.004 0.002 193.8 50: (ns/day) (hour/ns) -50: Performance: 875.457 0.027 +50: Performance: 754.420 0.032 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file 50: @@ -103327,13 +103338,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 33 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 191.3 +50: Time: 0.003 0.002 193.2 50: (ns/day) (hour/ns) -50: Performance: 972.623 0.025 +50: Performance: 832.738 0.029 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file 50: @@ -103383,16 +103394,16 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 30 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 191.2 +50: Time: 0.004 0.002 193.3 50: (ns/day) (hour/ns) -50: Performance: 887.630 0.027 +50: Performance: 792.054 0.030 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 (388 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 (456 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_input.mdp]: @@ -103448,13 +103459,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 32 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 190.3 +50: Time: 0.003 0.002 192.2 50: (ns/day) (hour/ns) -50: Performance: 935.124 0.026 +50: Performance: 861.320 0.028 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -103509,13 +103520,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 30 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.001 187.7 +50: Time: 0.004 0.002 192.4 50: (ns/day) (hour/ns) -50: Performance: 1006.962 0.024 +50: Performance: 783.840 0.031 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -103572,13 +103583,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 33 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 190.1 +50: Time: 0.004 0.002 192.9 50: (ns/day) (hour/ns) -50: Performance: 845.829 0.028 +50: Performance: 761.931 0.031 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -103635,13 +103646,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 30 % of the run time was spent communicating energies, +50: NOTE: 76 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 190.8 +50: Time: 0.038 0.023 165.1 50: (ns/day) (hour/ns) -50: Performance: 946.255 0.025 +50: Performance: 63.245 0.379 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file 50: @@ -103702,9 +103713,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 190.5 +50: Time: 0.004 0.002 192.8 50: (ns/day) (hour/ns) -50: Performance: 876.828 0.027 +50: Performance: 778.393 0.031 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file 50: @@ -103761,16 +103772,16 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 32 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 190.2 +50: Time: 0.004 0.002 192.9 50: (ns/day) (hour/ns) -50: Performance: 823.389 0.029 +50: Performance: 757.202 0.032 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 (340 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 (896 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/8 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_input.mdp]: @@ -103819,13 +103830,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 30 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 189.4 +50: Time: 0.004 0.002 192.9 50: (ns/day) (hour/ns) -50: Performance: 787.800 0.030 +50: Performance: 762.120 0.031 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -103873,13 +103884,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 29 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 189.6 +50: Time: 0.004 0.002 193.5 50: (ns/day) (hour/ns) -50: Performance: 843.570 0.028 +50: Performance: 751.704 0.032 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -103929,13 +103940,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 92 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 189.4 +50: Time: 0.036 0.034 107.4 50: (ns/day) (hour/ns) -50: Performance: 854.096 0.028 +50: Performance: 43.538 0.551 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -103985,14 +103996,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 85 % of the run time was spent in domain decomposition, -50: 0 % of the run time was spent in pair search, -50: you might want to increase nstlist (this has no effect on accuracy) +50: NOTE: 32 % of the run time was spent communicating energies, +50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.026 0.013 198.3 +50: Time: 0.004 0.002 192.2 50: (ns/day) (hour/ns) -50: Performance: 113.229 0.212 +50: Performance: 748.508 0.032 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as double precision energy file 50: @@ -104046,9 +104056,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 190.2 +50: Time: 0.004 0.002 193.0 50: (ns/day) (hour/ns) -50: Performance: 887.566 0.027 +50: Performance: 798.884 0.030 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as double precision energy file 50: @@ -104098,16 +104108,16 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 32 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 189.8 +50: Time: 0.004 0.002 192.9 50: (ns/day) (hour/ns) -50: Performance: 940.764 0.026 +50: Performance: 798.988 0.030 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_8.edr as double precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/8 (1052 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/8 (460 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/9 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_input.mdp]: @@ -104152,13 +104162,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 190.7 +50: Time: 0.003 0.002 193.5 50: (ns/day) (hour/ns) -50: Performance: 841.899 0.029 +50: Performance: 828.872 0.029 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -104202,13 +104212,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 32 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 190.8 +50: Time: 0.004 0.002 193.4 50: (ns/day) (hour/ns) -50: Performance: 965.535 0.025 +50: Performance: 745.474 0.032 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -104258,9 +104268,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 191.1 +50: Time: 0.004 0.002 191.6 50: (ns/day) (hour/ns) -50: Performance: 910.119 0.026 +50: Performance: 796.405 0.030 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -104306,13 +104316,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 32 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 188.8 +50: Time: 0.003 0.002 193.4 50: (ns/day) (hour/ns) -50: Performance: 846.642 0.028 +50: Performance: 842.359 0.028 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as double precision energy file 50: @@ -104358,13 +104368,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 33 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 192.0 +50: Time: 0.003 0.002 193.1 50: (ns/day) (hour/ns) -50: Performance: 919.903 0.026 +50: Performance: 851.616 0.028 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as double precision energy file 50: @@ -104410,16 +104420,16 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 33 % of the run time was spent communicating energies, +50: NOTE: 32 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 191.2 +50: Time: 0.004 0.002 193.3 50: (ns/day) (hour/ns) -50: Performance: 769.257 0.031 +50: Performance: 810.071 0.030 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_9.edr as double precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/9 (608 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/9 (408 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/10 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_input.mdp]: @@ -104464,13 +104474,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 32 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 190.5 +50: Time: 0.004 0.002 193.2 50: (ns/day) (hour/ns) -50: Performance: 854.037 0.028 +50: Performance: 773.410 0.031 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -104514,13 +104524,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 29 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 189.1 +50: Time: 0.004 0.002 193.1 50: (ns/day) (hour/ns) -50: Performance: 914.510 0.026 +50: Performance: 792.869 0.030 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -104566,13 +104576,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 30 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 190.9 +50: Time: 0.004 0.002 193.0 50: (ns/day) (hour/ns) -50: Performance: 793.124 0.030 +50: Performance: 787.548 0.030 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -104618,13 +104628,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 32 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 191.2 +50: Time: 0.004 0.002 193.0 50: (ns/day) (hour/ns) -50: Performance: 920.385 0.026 +50: Performance: 791.850 0.030 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as double precision energy file 50: @@ -104670,13 +104680,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 29 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 191.3 +50: Time: 0.004 0.002 192.9 50: (ns/day) (hour/ns) -50: Performance: 850.441 0.028 +50: Performance: 805.517 0.030 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as double precision energy file 50: @@ -104722,16 +104732,16 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 29 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 188.5 +50: Time: 0.004 0.002 192.7 50: (ns/day) (hour/ns) -50: Performance: 891.225 0.027 +50: Performance: 767.054 0.031 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_10.edr as double precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/10 (360 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/10 (440 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/11 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_input.mdp]: @@ -104776,13 +104786,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 30 % of the run time was spent communicating energies, +50: NOTE: 32 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 190.9 +50: Time: 0.004 0.002 193.1 50: (ns/day) (hour/ns) -50: Performance: 790.681 0.030 +50: Performance: 786.542 0.031 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -104826,13 +104836,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 32 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 191.5 +50: Time: 0.003 0.002 192.5 50: (ns/day) (hour/ns) -50: Performance: 819.664 0.029 +50: Performance: 823.334 0.029 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -104882,9 +104892,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 190.9 +50: Time: 0.004 0.002 192.8 50: (ns/day) (hour/ns) -50: Performance: 935.407 0.026 +50: Performance: 792.359 0.030 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -104930,13 +104940,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 191.8 +50: Time: 0.004 0.002 193.1 50: (ns/day) (hour/ns) -50: Performance: 787.649 0.030 +50: Performance: 795.018 0.030 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as double precision energy file 50: @@ -104986,9 +104996,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 190.5 +50: Time: 0.004 0.002 192.9 50: (ns/day) (hour/ns) -50: Performance: 850.734 0.028 +50: Performance: 797.178 0.030 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as double precision energy file 50: @@ -105034,16 +105044,16 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 30 % of the run time was spent communicating energies, +50: NOTE: 32 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 184.4 +50: Time: 0.004 0.002 192.3 50: (ns/day) (hour/ns) -50: Performance: 859.518 0.028 +50: Performance: 799.817 0.030 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_11.edr as double precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/11 (340 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/11 (376 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/12 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_input.mdp]: @@ -105095,15 +105105,15 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 3.0%. -50: The balanceable part of the MD step is 58%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.7%. +50: Average load imbalance: 0.4%. +50: The balanceable part of the MD step is 54%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.2%. 50: 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.005 0.003 190.9 +50: Time: 0.005 0.003 193.4 50: (ns/day) (hour/ns) -50: Performance: 558.987 0.043 +50: Performance: 576.538 0.042 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -105154,15 +105164,15 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.1%. -50: The balanceable part of the MD step is 58%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.2%. +50: Average load imbalance: 1.9%. +50: The balanceable part of the MD step is 53%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.0%. 50: 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 191.2 +50: Time: 0.005 0.002 193.5 50: (ns/day) (hour/ns) -50: Performance: 648.177 0.037 +50: Performance: 588.264 0.041 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -105215,15 +105225,15 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.0%. -50: The balanceable part of the MD step is 58%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.2%. +50: Average load imbalance: 1.2%. +50: The balanceable part of the MD step is 50%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.6%. 50: 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.005 0.002 192.0 +50: Time: 0.005 0.002 193.1 50: (ns/day) (hour/ns) -50: Performance: 600.301 0.040 +50: Performance: 613.086 0.039 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -105276,15 +105286,15 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.4%. -50: The balanceable part of the MD step is 58%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.4%. +50: Average load imbalance: 1.3%. +50: The balanceable part of the MD step is 59%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.8%. 50: 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.005 0.002 191.0 +50: Time: 0.005 0.002 193.2 50: (ns/day) (hour/ns) -50: Performance: 614.554 0.039 +50: Performance: 622.534 0.039 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as double precision energy file 50: @@ -105336,17 +105346,16 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was turned on during the run due to measured imbalance. -50: Average load imbalance: 4.1%. +50: DLB was off during the run due to low measured imbalance. +50: Average load imbalance: 2.9%. 50: The balanceable part of the MD step is 56%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 2.3%. -50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % +50: Part of the total run time spent waiting due to load imbalance: 1.7%. 50: 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.005 0.002 191.2 +50: Time: 0.004 0.002 192.9 50: (ns/day) (hour/ns) -50: Performance: 592.564 0.041 +50: Performance: 645.765 0.037 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as double precision energy file 50: @@ -105398,23 +105407,20 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.7%. -50: The balanceable part of the MD step is 50%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.3%. -50: +50: DLB was turned on during the run due to measured imbalance. +50: Average load imbalance: 4.3%. +50: The balanceable part of the MD step is 55%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 2.4%. +50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % 50: -50: NOTE: 70 % of the run time was spent in domain decomposition, -50: 1 % of the run time was spent in pair search, -50: you might want to increase nstlist (this has no effect on accuracy) 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.027 0.014 198.4 +50: Time: 0.005 0.003 192.1 50: (ns/day) (hour/ns) -50: Performance: 107.855 0.223 +50: Performance: 533.223 0.045 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_12.edr as double precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/12 (372 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/12 (392 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/13 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_input.mdp]: @@ -105465,19 +105471,20 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.5%. -50: The balanceable part of the MD step is 53%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.3%. +50: DLB was turned on during the run due to measured imbalance. +50: Average load imbalance: 4.4%. +50: The balanceable part of the MD step is 51%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 2.2%. +50: Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % 50: 50: 50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 191.1 +50: Time: 0.004 0.002 193.9 50: (ns/day) (hour/ns) -50: Performance: 754.143 0.032 +50: Performance: 686.302 0.035 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -105528,18 +105535,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 0.7%. -50: The balanceable part of the MD step is 50%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.4%. +50: Average load imbalance: 3.0%. +50: The balanceable part of the MD step is 51%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.5%. 50: 50: 50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 191.2 +50: Time: 0.004 0.002 193.1 50: (ns/day) (hour/ns) -50: Performance: 763.158 0.031 +50: Performance: 700.585 0.034 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -105592,18 +105599,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.3%. +50: Average load imbalance: 1.7%. 50: The balanceable part of the MD step is 53%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.2%. +50: Part of the total run time spent waiting due to load imbalance: 0.9%. 50: 50: -50: NOTE: 30 % of the run time was spent communicating energies, +50: NOTE: 32 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 189.9 +50: Time: 0.004 0.002 193.1 50: (ns/day) (hour/ns) -50: Performance: 676.802 0.035 +50: Performance: 720.579 0.033 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -105656,18 +105663,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 0.9%. -50: The balanceable part of the MD step is 51%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.4%. +50: Average load imbalance: 1.6%. +50: The balanceable part of the MD step is 52%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 0.8%. 50: 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 33 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 192.2 +50: Time: 0.004 0.002 193.4 50: (ns/day) (hour/ns) -50: Performance: 647.768 0.037 +50: Performance: 712.084 0.034 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as double precision energy file 50: @@ -105720,18 +105727,18 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.8%. -50: The balanceable part of the MD step is 54%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.9%. +50: Average load imbalance: 2.3%. +50: The balanceable part of the MD step is 53%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.2%. 50: 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 33 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 191.0 +50: Time: 0.004 0.002 193.3 50: (ns/day) (hour/ns) -50: Performance: 709.419 0.034 +50: Performance: 715.101 0.034 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as double precision energy file 50: @@ -105784,21 +105791,21 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.7%. -50: The balanceable part of the MD step is 53%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.9%. +50: Average load imbalance: 2.1%. +50: The balanceable part of the MD step is 50%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.0%. 50: 50: -50: NOTE: 31 % of the run time was spent communicating energies, +50: NOTE: 33 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 191.5 +50: Time: 0.004 0.002 193.2 50: (ns/day) (hour/ns) -50: Performance: 772.053 0.031 +50: Performance: 693.917 0.035 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_13.edr as double precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/13 (288 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/13 (320 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/14 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_input.mdp]: @@ -105844,9 +105851,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 190.7 +50: Time: 0.005 0.002 192.7 50: (ns/day) (hour/ns) -50: Performance: 690.533 0.035 +50: Performance: 626.522 0.038 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -105891,9 +105898,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.005 0.002 190.8 +50: Time: 0.004 0.002 192.5 50: (ns/day) (hour/ns) -50: Performance: 615.936 0.039 +50: Performance: 682.501 0.035 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -105940,9 +105947,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.005 0.002 190.4 +50: Time: 0.004 0.002 192.8 50: (ns/day) (hour/ns) -50: Performance: 617.758 0.039 +50: Performance: 668.939 0.036 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -105989,9 +105996,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 190.7 +50: Time: 0.004 0.002 190.5 50: (ns/day) (hour/ns) -50: Performance: 767.675 0.031 +50: Performance: 669.921 0.036 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as double precision energy file 50: @@ -106038,9 +106045,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 190.1 +50: Time: 0.004 0.002 192.0 50: (ns/day) (hour/ns) -50: Performance: 626.427 0.038 +50: Performance: 681.256 0.035 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as double precision energy file 50: @@ -106086,13 +106093,16 @@ 50: 50: Writing final coordinates. 50: +50: NOTE: 26 % of the run time was spent communicating energies, +50: you might want to increase some nst* mdp options +50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.005 0.002 191.6 +50: Time: 2.212 1.130 195.8 50: (ns/day) (hour/ns) -50: Performance: 619.622 0.039 +50: Performance: 1.300 18.464 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_14.edr as double precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/14 (324 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/14 (2044 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/15 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_input.mdp]: @@ -106137,13 +106147,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 34 % of the run time was spent communicating energies, +50: NOTE: 32 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 191.0 +50: Time: 0.004 0.002 193.1 50: (ns/day) (hour/ns) -50: Performance: 767.293 0.031 +50: Performance: 737.840 0.033 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -106187,13 +106197,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 82 % of the run time was spent communicating energies, +50: NOTE: 33 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.036 0.018 199.0 +50: Time: 0.004 0.002 193.3 50: (ns/day) (hour/ns) -50: Performance: 81.989 0.293 +50: Performance: 769.305 0.031 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -106239,13 +106249,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 32 % of the run time was spent communicating energies, +50: NOTE: 34 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 191.7 +50: Time: 0.004 0.002 193.1 50: (ns/day) (hour/ns) -50: Performance: 852.147 0.028 +50: Performance: 785.439 0.031 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -106291,13 +106301,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 10 % of the run time was spent communicating energies, +50: NOTE: 33 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.017 0.008 197.6 +50: Time: 0.004 0.002 193.6 50: (ns/day) (hour/ns) -50: Performance: 173.440 0.138 +50: Performance: 748.599 0.032 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as double precision energy file 50: @@ -106343,13 +106353,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 32 % of the run time was spent communicating energies, +50: NOTE: 33 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 190.6 +50: Time: 0.004 0.002 193.0 50: (ns/day) (hour/ns) -50: Performance: 782.944 0.031 +50: Performance: 751.796 0.032 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as double precision energy file 50: @@ -106399,12 +106409,12 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 191.2 +50: Time: 0.004 0.002 194.1 50: (ns/day) (hour/ns) -50: Performance: 730.794 0.033 +50: Performance: 706.207 0.034 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_15.edr as double precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/15 (372 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/15 (456 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/16 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_input.mdp]: @@ -106453,9 +106463,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 192.0 +50: Time: 0.004 0.002 194.3 50: (ns/day) (hour/ns) -50: Performance: 739.656 0.032 +50: Performance: 705.479 0.034 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -106499,13 +106509,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 32 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 191.8 +50: Time: 0.004 0.002 193.8 50: (ns/day) (hour/ns) -50: Performance: 703.585 0.034 +50: Performance: 693.448 0.035 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -106555,9 +106565,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 191.4 +50: Time: 0.004 0.002 194.0 50: (ns/day) (hour/ns) -50: Performance: 683.334 0.035 +50: Performance: 686.876 0.035 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -106607,9 +106617,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 192.3 +50: Time: 0.004 0.002 193.9 50: (ns/day) (hour/ns) -50: Performance: 827.036 0.029 +50: Performance: 708.807 0.034 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as double precision energy file 50: @@ -106655,13 +106665,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 91 % of the run time was spent communicating energies, +50: NOTE: 31 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.036 0.018 198.2 +50: Time: 0.004 0.002 194.3 50: (ns/day) (hour/ns) -50: Performance: 80.687 0.297 +50: Performance: 677.845 0.035 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as double precision energy file 50: @@ -106711,12 +106721,12 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 192.4 +50: Time: 0.004 0.002 194.0 50: (ns/day) (hour/ns) -50: Performance: 661.327 0.036 +50: Performance: 687.183 0.035 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_16.edr as double precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/16 (320 ms) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/16 (672 ms) 50: [ RUN ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/17 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_input.mdp]: @@ -106761,13 +106771,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 28 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.005 0.002 192.6 +50: Time: 0.005 0.002 194.2 50: (ns/day) (hour/ns) -50: Performance: 628.279 0.038 +50: Performance: 616.769 0.039 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -106811,13 +106821,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 28 % of the run time was spent communicating energies, +50: NOTE: 29 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 191.8 +50: Time: 0.004 0.002 193.6 50: (ns/day) (hour/ns) -50: Performance: 626.108 0.038 +50: Performance: 636.096 0.038 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -106867,9 +106877,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 192.1 +50: Time: 0.005 0.002 193.5 50: (ns/day) (hour/ns) -50: Performance: 648.484 0.037 +50: Performance: 624.047 0.038 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -106919,9 +106929,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.005 0.002 191.5 +50: Time: 0.005 0.003 194.5 50: (ns/day) (hour/ns) -50: Performance: 595.773 0.040 +50: Performance: 569.082 0.042 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as double precision energy file 50: @@ -106967,13 +106977,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 91 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.037 0.019 198.4 +50: Time: 0.005 0.003 191.9 50: (ns/day) (hour/ns) -50: Performance: 78.911 0.304 +50: Performance: 567.587 0.042 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as double precision energy file 50: @@ -107019,17 +107029,17 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 28 % of the run time was spent communicating energies, +50: NOTE: 91 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.005 0.002 192.0 +50: Time: 0.044 0.022 198.4 50: (ns/day) (hour/ns) -50: Performance: 614.799 0.039 +50: Performance: 66.882 0.359 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithCoupling_PeriodicActionsTest_PeriodicActionsAgreeWithReference_17.edr as double precision energy file -50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/17 (348 ms) -50: [----------] 18 tests from PropagatorsWithCoupling/PeriodicActionsTest (7244 ms total) +50: [ OK ] PropagatorsWithCoupling/PeriodicActionsTest.PeriodicActionsAgreeWithReference/17 (697 ms) +50: [----------] 18 tests from PropagatorsWithCoupling/PeriodicActionsTest (12741 ms total) 50: 50: [----------] 8 tests from PropagatorsWithConstraints/PeriodicActionsTest 50: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 @@ -107091,18 +107101,18 @@ 50: 50: Dynamic load balancing report: 50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 5.2%. -50: The balanceable part of the MD step is 49%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 2.6%. +50: Average load imbalance: 4.5%. +50: The balanceable part of the MD step is 45%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 2.0%. 50: 50: -50: NOTE: 29 % of the run time was spent communicating energies, +50: NOTE: 28 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 191.8 +50: Time: 0.004 0.002 192.5 50: (ns/day) (hour/ns) -50: Performance: 831.557 0.029 +50: Performance: 637.149 0.038 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -107160,23 +107170,19 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 0.1%. -50: The balanceable part of the MD step is 37%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.0%. -50: +50: DLB got disabled because it was unsuitable to use. +50: Average load imbalance: 4.0%. +50: The balanceable part of the MD step is 50%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 2.0%. 50: -50: NOTE: 18 % of the run time was spent in domain decomposition, -50: 0 % of the run time was spent in pair search, -50: you might want to increase nstlist (this has no effect on accuracy) 50: -50: NOTE: 12 % of the run time was spent communicating energies, +50: NOTE: 29 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 1.520 0.776 195.9 +50: Time: 0.004 0.002 191.3 50: (ns/day) (hour/ns) -50: Performance: 1.893 12.676 +50: Performance: 688.604 0.035 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -107237,18 +107243,18 @@ 50: 50: Dynamic load balancing report: 50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 6.1%. -50: The balanceable part of the MD step is 48%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 2.9%. +50: Average load imbalance: 4.1%. +50: The balanceable part of the MD step is 52%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 2.1%. 50: 50: -50: NOTE: 30 % of the run time was spent communicating energies, +50: NOTE: 29 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 191.9 +50: Time: 0.005 0.002 191.8 50: (ns/day) (hour/ns) -50: Performance: 726.656 0.033 +50: Performance: 606.030 0.040 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -107309,18 +107315,18 @@ 50: 50: Dynamic load balancing report: 50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 7.6%. -50: The balanceable part of the MD step is 51%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 3.9%. +50: Average load imbalance: 4.7%. +50: The balanceable part of the MD step is 49%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 2.3%. 50: 50: -50: NOTE: 27 % of the run time was spent communicating energies, +50: NOTE: 28 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 192.4 +50: Time: 0.004 0.002 192.2 50: (ns/day) (hour/ns) -50: Performance: 678.891 0.035 +50: Performance: 650.985 0.037 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 50: @@ -107381,18 +107387,18 @@ 50: 50: Dynamic load balancing report: 50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 7.3%. -50: The balanceable part of the MD step is 50%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 3.6%. +50: Average load imbalance: 5.1%. +50: The balanceable part of the MD step is 47%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 2.4%. 50: 50: -50: NOTE: 27 % of the run time was spent communicating energies, +50: NOTE: 29 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 191.9 +50: Time: 0.004 0.002 192.1 50: (ns/day) (hour/ns) -50: Performance: 695.876 0.034 +50: Performance: 644.245 0.037 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file 50: @@ -107453,21 +107459,21 @@ 50: 50: Dynamic load balancing report: 50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 4.9%. -50: The balanceable part of the MD step is 50%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 2.4%. +50: Average load imbalance: 6.2%. +50: The balanceable part of the MD step is 47%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 2.9%. 50: 50: -50: NOTE: 28 % of the run time was spent communicating energies, +50: NOTE: 29 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 190.2 +50: Time: 0.004 0.002 191.4 50: (ns/day) (hour/ns) -50: Performance: 730.101 0.033 +50: Performance: 690.340 0.035 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_0.edr as double precision energy file -50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (10552 ms) +50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/0 (13535 ms) 50: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_input.mdp]: @@ -107526,19 +107532,19 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 8.3%. +50: DLB was off during the run due to low measured imbalance. +50: Average load imbalance: 2.5%. 50: The balanceable part of the MD step is 49%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 4.0%. +50: Part of the total run time spent waiting due to load imbalance: 1.2%. 50: 50: -50: NOTE: 77 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.055 0.035 155.1 +50: Time: 0.004 0.002 190.6 50: (ns/day) (hour/ns) -50: Performance: 41.748 0.575 +50: Performance: 643.404 0.037 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -107596,19 +107602,19 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 4.2%. -50: The balanceable part of the MD step is 53%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 2.2%. +50: DLB was off during the run due to low measured imbalance. +50: Average load imbalance: 2.6%. +50: The balanceable part of the MD step is 51%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.3%. 50: 50: -50: NOTE: 30 % of the run time was spent communicating energies, +50: NOTE: 28 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 191.5 +50: Time: 0.004 0.002 191.4 50: (ns/day) (hour/ns) -50: Performance: 831.838 0.029 +50: Performance: 693.292 0.035 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -107669,18 +107675,18 @@ 50: 50: Dynamic load balancing report: 50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 4.3%. -50: The balanceable part of the MD step is 53%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 2.3%. +50: Average load imbalance: 8.0%. +50: The balanceable part of the MD step is 48%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 3.8%. 50: 50: -50: NOTE: 29 % of the run time was spent communicating energies, +50: NOTE: 28 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 191.3 +50: Time: 0.004 0.002 192.9 50: (ns/day) (hour/ns) -50: Performance: 831.445 0.029 +50: Performance: 686.150 0.035 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -107741,18 +107747,18 @@ 50: 50: Dynamic load balancing report: 50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 5.9%. -50: The balanceable part of the MD step is 50%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 2.9%. +50: Average load imbalance: 6.9%. +50: The balanceable part of the MD step is 46%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 3.2%. 50: 50: -50: NOTE: 47 % of the run time was spent communicating energies, +50: NOTE: 29 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.037 0.018 199.0 +50: Time: 0.004 0.002 191.8 50: (ns/day) (hour/ns) -50: Performance: 79.712 0.301 +50: Performance: 711.385 0.034 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file 50: @@ -107813,18 +107819,18 @@ 50: 50: Dynamic load balancing report: 50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 7.1%. -50: The balanceable part of the MD step is 50%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 3.5%. +50: Average load imbalance: 6.4%. +50: The balanceable part of the MD step is 49%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 3.2%. 50: 50: -50: NOTE: 27 % of the run time was spent communicating energies, +50: NOTE: 30 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 191.0 +50: Time: 0.004 0.002 192.8 50: (ns/day) (hour/ns) -50: Performance: 758.460 0.032 +50: Performance: 723.287 0.033 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file 50: @@ -107885,21 +107891,21 @@ 50: 50: Dynamic load balancing report: 50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 9.3%. -50: The balanceable part of the MD step is 50%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 4.6%. +50: Average load imbalance: 6.9%. +50: The balanceable part of the MD step is 48%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 3.3%. 50: 50: -50: NOTE: 26 % of the run time was spent communicating energies, +50: NOTE: 29 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 192.6 +50: Time: 0.004 0.002 192.9 50: (ns/day) (hour/ns) -50: Performance: 723.626 0.033 +50: Performance: 754.697 0.032 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_1.edr as double precision energy file -50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 (8216 ms) +50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/1 (10267 ms) 50: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_input.mdp]: @@ -107956,9 +107962,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 192.3 +50: Time: 0.004 0.002 193.9 50: (ns/day) (hour/ns) -50: Performance: 713.569 0.034 +50: Performance: 666.262 0.036 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -108010,10 +108016,13 @@ 50: 50: Writing final coordinates. 50: +50: NOTE: 6 % of the run time was spent communicating energies, +50: you might want to increase some nst* mdp options +50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 190.9 +50: Time: 0.004 0.002 193.6 50: (ns/day) (hour/ns) -50: Performance: 688.719 0.035 +50: Performance: 688.681 0.035 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -108067,13 +108076,10 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 5 % of the run time was spent communicating energies, -50: you might want to increase some nst* mdp options -50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 191.8 +50: Time: 0.004 0.002 193.9 50: (ns/day) (hour/ns) -50: Performance: 724.776 0.033 +50: Performance: 679.715 0.035 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -108127,13 +108133,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 30 % of the run time was spent communicating energies, +50: NOTE: 5 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 2.087 1.043 200.0 +50: Time: 0.004 0.002 193.5 50: (ns/day) (hour/ns) -50: Performance: 1.408 17.050 +50: Performance: 709.133 0.034 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file 50: @@ -108187,10 +108193,13 @@ 50: 50: Writing final coordinates. 50: +50: NOTE: 6 % of the run time was spent communicating energies, +50: you might want to increase some nst* mdp options +50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 192.1 +50: Time: 0.005 0.002 192.3 50: (ns/day) (hour/ns) -50: Performance: 756.365 0.032 +50: Performance: 610.443 0.039 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file 50: @@ -108244,16 +108253,17 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 5 % of the run time was spent communicating energies, -50: you might want to increase some nst* mdp options +50: NOTE: 83 % of the run time was spent in domain decomposition, +50: 1 % of the run time was spent in pair search, +50: you might want to increase nstlist (this has no effect on accuracy) 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 192.4 +50: Time: 0.029 0.015 198.6 50: (ns/day) (hour/ns) -50: Performance: 695.837 0.034 +50: Performance: 99.658 0.241 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_2.edr as double precision energy file -50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 (9245 ms) +50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/2 (8373 ms) 50: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_input.mdp]: @@ -108307,9 +108317,9 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 190.5 +50: Time: 0.062 0.031 198.9 50: (ns/day) (hour/ns) -50: Performance: 733.404 0.033 +50: Performance: 47.062 0.510 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -108361,10 +108371,13 @@ 50: 50: Writing final coordinates. 50: +50: NOTE: 5 % of the run time was spent communicating energies, +50: you might want to increase some nst* mdp options +50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.006 0.003 194.4 +50: Time: 0.004 0.002 194.1 50: (ns/day) (hour/ns) -50: Performance: 461.692 0.052 +50: Performance: 651.329 0.037 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -108418,10 +108431,13 @@ 50: 50: Writing final coordinates. 50: +50: NOTE: 6 % of the run time was spent communicating energies, +50: you might want to increase some nst* mdp options +50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 191.5 +50: Time: 0.004 0.002 193.4 50: (ns/day) (hour/ns) -50: Performance: 701.542 0.034 +50: Performance: 678.966 0.035 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -108475,10 +108491,13 @@ 50: 50: Writing final coordinates. 50: +50: NOTE: 6 % of the run time was spent communicating energies, +50: you might want to increase some nst* mdp options +50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.003 0.002 191.7 +50: Time: 0.005 0.002 193.7 50: (ns/day) (hour/ns) -50: Performance: 818.792 0.029 +50: Performance: 630.853 0.038 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file 50: @@ -108532,13 +108551,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 5 % of the run time was spent communicating energies, +50: NOTE: 32 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 192.1 +50: Time: 1.788 0.926 193.1 50: (ns/day) (hour/ns) -50: Performance: 650.366 0.037 +50: Performance: 1.587 15.126 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file 50: @@ -108592,13 +108611,16 @@ 50: 50: Writing final coordinates. 50: +50: NOTE: 6 % of the run time was spent communicating energies, +50: you might want to increase some nst* mdp options +50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.005 0.002 192.3 +50: Time: 0.004 0.002 193.1 50: (ns/day) (hour/ns) -50: Performance: 625.187 0.038 +50: Performance: 705.115 0.034 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_3.edr as double precision energy file -50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 (9056 ms) +50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/3 (8765 ms) 50: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_input.mdp]: @@ -108651,13 +108673,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 6 % of the run time was spent communicating energies, +50: NOTE: 5 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 193.0 +50: Time: 0.004 0.002 194.0 50: (ns/day) (hour/ns) -50: Performance: 644.245 0.037 +50: Performance: 688.604 0.035 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -108709,10 +108731,13 @@ 50: 50: Writing final coordinates. 50: +50: NOTE: 28 % of the run time was spent communicating energies, +50: you might want to increase some nst* mdp options +50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.005 0.002 192.5 +50: Time: 2.108 1.086 194.1 50: (ns/day) (hour/ns) -50: Performance: 620.028 0.039 +50: Performance: 1.353 17.741 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -108766,10 +108791,13 @@ 50: 50: Writing final coordinates. 50: +50: NOTE: 6 % of the run time was spent communicating energies, +50: you might want to increase some nst* mdp options +50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 191.5 +50: Time: 0.005 0.002 194.1 50: (ns/day) (hour/ns) -50: Performance: 719.317 0.033 +50: Performance: 599.659 0.040 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -108827,9 +108855,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 192.9 +50: Time: 0.004 0.002 194.2 50: (ns/day) (hour/ns) -50: Performance: 778.246 0.031 +50: Performance: 667.779 0.036 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file 50: @@ -108883,13 +108911,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 6 % of the run time was spent communicating energies, +50: NOTE: 5 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 193.9 +50: Time: 0.005 0.002 192.2 50: (ns/day) (hour/ns) -50: Performance: 687.221 0.035 +50: Performance: 610.383 0.039 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file 50: @@ -108944,12 +108972,12 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 193.6 +50: Time: 0.004 0.002 192.6 50: (ns/day) (hour/ns) -50: Performance: 699.908 0.034 +50: Performance: 747.690 0.032 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_4.edr as double precision energy file -50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 (8359 ms) +50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/4 (8031 ms) 50: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_input.mdp]: @@ -109002,13 +109030,10 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 6 % of the run time was spent communicating energies, -50: you might want to increase some nst* mdp options -50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 192.9 +50: Time: 0.005 0.003 191.1 50: (ns/day) (hour/ns) -50: Performance: 708.848 0.034 +50: Performance: 577.781 0.042 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -109060,13 +109085,10 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 27 % of the run time was spent communicating energies, -50: you might want to increase some nst* mdp options -50: 50: Core t (s) Wall t (s) (%) -50: Time: 2.015 1.024 196.9 +50: Time: 0.007 0.004 195.7 50: (ns/day) (hour/ns) -50: Performance: 1.435 16.725 +50: Performance: 388.681 0.062 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -109120,13 +109142,10 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 28 % of the run time was spent communicating energies, -50: you might want to increase some nst* mdp options -50: 50: Core t (s) Wall t (s) (%) -50: Time: 2.092 1.078 194.1 +50: Time: 0.004 0.002 193.8 50: (ns/day) (hour/ns) -50: Performance: 1.363 17.611 +50: Performance: 658.746 0.036 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -109180,10 +109199,13 @@ 50: 50: Writing final coordinates. 50: +50: NOTE: 5 % of the run time was spent communicating energies, +50: you might want to increase some nst* mdp options +50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 192.0 +50: Time: 0.005 0.002 194.7 50: (ns/day) (hour/ns) -50: Performance: 706.814 0.034 +50: Performance: 620.465 0.039 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file 50: @@ -109241,9 +109263,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 192.8 +50: Time: 0.005 0.002 191.5 50: (ns/day) (hour/ns) -50: Performance: 661.718 0.036 +50: Performance: 591.143 0.041 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file 50: @@ -109298,12 +109320,12 @@ 50: Writing final coordinates. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 192.7 +50: Time: 0.004 0.002 191.5 50: (ns/day) (hour/ns) -50: Performance: 730.707 0.033 +50: Performance: 755.252 0.032 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_5.edr as double precision energy file -50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 (9268 ms) +50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/5 (7466 ms) 50: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_input.mdp]: @@ -109362,25 +109384,16 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 86.8%. -50: The balanceable part of the MD step is 9%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 7.4%. -50: -50: NOTE: 7.4 % of the available CPU time was lost due to load imbalance -50: in the domain decomposition. -50: You might want to use dynamic load balancing (option -dlb.) -50: You can also consider manually changing the decomposition (option -dd); -50: e.g. by using fewer domains along the box dimension in which there is -50: considerable inhomogeneity in the simulated system. +50: DLB was off during the run due to low measured imbalance. +50: Average load imbalance: 3.4%. +50: The balanceable part of the MD step is 57%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.9%. 50: -50: NOTE: 56 % of the run time was spent communicating energies, -50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.099 0.050 199.5 +50: Time: 0.014 0.007 196.6 50: (ns/day) (hour/ns) -50: Performance: 29.510 0.813 +50: Performance: 204.552 0.117 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -109439,18 +109452,21 @@ 50: 50: Dynamic load balancing report: 50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 8.6%. -50: The balanceable part of the MD step is 55%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 4.7%. -50: +50: Average load imbalance: 10.5%. +50: The balanceable part of the MD step is 57%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 6.0%. 50: -50: NOTE: 78 % of the run time was spent communicating energies, -50: you might want to increase some nst* mdp options +50: NOTE: 6.0 % of the available CPU time was lost due to load imbalance +50: in the domain decomposition. +50: You might want to use dynamic load balancing (option -dlb.) +50: You can also consider manually changing the decomposition (option -dd); +50: e.g. by using fewer domains along the box dimension in which there is +50: considerable inhomogeneity in the simulated system. 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.021 0.010 197.5 +50: Time: 0.006 0.003 191.1 50: (ns/day) (hour/ns) -50: Performance: 140.579 0.171 +50: Performance: 472.438 0.051 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -109510,16 +109526,16 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 5.4%. -50: The balanceable part of the MD step is 58%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 3.1%. +50: DLB was off during the run due to low measured imbalance. +50: Average load imbalance: 2.3%. +50: The balanceable part of the MD step is 61%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.4%. 50: 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.004 0.002 191.7 +50: Time: 0.006 0.003 192.3 50: (ns/day) (hour/ns) -50: Performance: 663.071 0.036 +50: Performance: 501.085 0.048 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -109579,16 +109595,16 @@ 50: 50: 50: Dynamic load balancing report: -50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 2.4%. -50: The balanceable part of the MD step is 58%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 1.4%. +50: DLB got disabled because it was unsuitable to use. +50: Average load imbalance: 5.7%. +50: The balanceable part of the MD step is 60%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 3.4%. 50: 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.005 0.002 191.8 +50: Time: 0.006 0.003 190.0 50: (ns/day) (hour/ns) -50: Performance: 603.566 0.040 +50: Performance: 430.059 0.056 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file 50: @@ -109649,15 +109665,15 @@ 50: 50: Dynamic load balancing report: 50: DLB was off during the run due to low measured imbalance. -50: Average load imbalance: 1.1%. -50: The balanceable part of the MD step is 58%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 0.6%. +50: Average load imbalance: 2.3%. +50: The balanceable part of the MD step is 63%, load imbalance is computed from this. +50: Part of the total run time spent waiting due to load imbalance: 1.4%. 50: 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.005 0.002 190.9 +50: Time: 0.006 0.003 190.8 50: (ns/day) (hour/ns) -50: Performance: 607.733 0.039 +50: Performance: 457.459 0.052 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file 50: @@ -109718,18 +109734,22 @@ 50: 50: Dynamic load balancing report: 50: DLB got disabled because it was unsuitable to use. -50: Average load imbalance: 5.8%. +50: Average load imbalance: 6.7%. 50: The balanceable part of the MD step is 56%, load imbalance is computed from this. -50: Part of the total run time spent waiting due to load imbalance: 3.2%. +50: Part of the total run time spent waiting due to load imbalance: 3.8%. +50: 50: +50: NOTE: 10 % of the run time was spent in domain decomposition, +50: 3 % of the run time was spent in pair search, +50: you might want to increase nstlist (this has no effect on accuracy) 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.005 0.002 191.0 +50: Time: 0.006 0.003 193.2 50: (ns/day) (hour/ns) -50: Performance: 596.033 0.040 +50: Performance: 481.466 0.050 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_6.edr as double precision energy file -50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 (5395 ms) +50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/6 (4817 ms) 50: [ RUN ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_input.mdp]: @@ -109782,13 +109802,10 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 5 % of the run time was spent communicating energies, -50: you might want to increase some nst* mdp options -50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.006 0.003 191.3 +50: Time: 0.005 0.002 191.8 50: (ns/day) (hour/ns) -50: Performance: 491.138 0.049 +50: Performance: 602.120 0.040 50: 50: NOTE 1 [file /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_input.mdp]: 50: With Verlet lists the optimal nstlist is >= 10, with GPUs >= 20. Note @@ -109840,13 +109857,13 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 7 % of the run time was spent communicating energies, +50: NOTE: 6 % of the run time was spent communicating energies, 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.005 0.003 192.3 +50: Time: 0.006 0.003 189.8 50: (ns/day) (hour/ns) -50: Performance: 567.587 0.042 +50: Performance: 468.397 0.051 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -109904,9 +109921,9 @@ 50: you might want to increase some nst* mdp options 50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.006 0.003 192.5 +50: Time: 0.006 0.003 191.7 50: (ns/day) (hour/ns) -50: Performance: 507.045 0.047 +50: Performance: 488.026 0.049 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file 50: Reading energy frame 0 time 0.000 Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.004 Reading energy frame 1 time 0.004 Reading energy frame 2 time 0.008 Reading energy frame 2 time 0.008 Reading energy frame 3 time 0.012 Reading energy frame 3 time 0.012 Reading energy frame 4 time 0.016 Reading energy frame 4 time 0.016 Last energy frame read 4 time 0.016 @@ -109960,13 +109977,10 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 6 % of the run time was spent communicating energies, -50: you might want to increase some nst* mdp options -50: 50: Core t (s) Wall t (s) (%) -50: Time: 0.005 0.003 191.8 +50: Time: 0.005 0.003 188.6 50: (ns/day) (hour/ns) -50: Performance: 538.843 0.045 +50: Performance: 586.221 0.041 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file 50: @@ -110020,13 +110034,10 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 34 % of the run time was spent communicating energies, -50: you might want to increase some nst* mdp options -50: 50: Core t (s) Wall t (s) (%) -50: Time: 4.401 2.216 198.6 +50: Time: 0.005 0.002 191.2 50: (ns/day) (hour/ns) -50: Performance: 0.663 36.209 +50: Performance: 611.534 0.039 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file 50: @@ -110080,22 +110091,19 @@ 50: 50: Writing final coordinates. 50: -50: NOTE: 36 % of the run time was spent communicating energies, -50: you might want to increase some nst* mdp options -50: 50: Core t (s) Wall t (s) (%) -50: Time: 5.216 2.626 198.6 +50: Time: 0.005 0.003 192.2 50: (ns/day) (hour/ns) -50: Performance: 0.559 42.908 +50: Performance: 563.332 0.043 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7_reference.edr as double precision energy file 50: Opened /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PropagatorsWithConstraints_PeriodicActionsTest_PeriodicActionsAgreeWithReference_7.edr as double precision energy file -50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 (10962 ms) -50: [----------] 8 tests from PropagatorsWithConstraints/PeriodicActionsTest (71054 ms total) +50: [ OK ] PropagatorsWithConstraints/PeriodicActionsTest.PeriodicActionsAgreeWithReference/7 (3939 ms) +50: [----------] 8 tests from PropagatorsWithConstraints/PeriodicActionsTest (65195 ms total) 50: 50: [----------] Global test environment tear-down -50: [==========] 27 tests from 3 test cases ran. (79200 ms total) +50: [==========] 27 tests from 3 test cases ran. (78725 ms total) 50: [ PASSED ] 27 tests. -50/54 Test #50: MdrunMpiCoordinationTestsTwoRanks ... Passed 79.26 sec +50/54 Test #50: MdrunMpiCoordinationTestsTwoRanks ... Passed 78.78 sec test 51 Start 51: GmxapiExternalInterfaceTests @@ -110105,7 +110113,7 @@ 51: [----------] Global test environment set-up. 51: [----------] 8 tests from GmxApiTest 51: [ RUN ] GmxApiTest.ApiRunnerRestrainedMD -51: Setting the LD random seed to -1779223585 +51: Setting the LD random seed to -13189377 51: Generated 331705 of the 331705 non-bonded parameter combinations 51: Generating 1-4 interactions: fudge = 0.5 51: Generated 331705 of the 331705 1-4 parameter combinations @@ -110154,12 +110162,12 @@ 51: Writing final coordinates. 51: 51: Core t (s) Wall t (s) (%) -51: Time: 0.003 0.002 189.8 +51: Time: 0.003 0.002 192.2 51: (ns/day) (hour/ns) -51: Performance: 323.487 0.074 -51: [ OK ] GmxApiTest.ApiRunnerRestrainedMD (865 ms) +51: Performance: 318.728 0.075 +51: [ OK ] GmxApiTest.ApiRunnerRestrainedMD (646 ms) 51: [ RUN ] GmxApiTest.SystemConstruction -51: Setting the LD random seed to -162271780 +51: Setting the LD random seed to -1369517057 51: Generated 331705 of the 331705 non-bonded parameter combinations 51: Generating 1-4 interactions: fudge = 0.5 51: Generated 331705 of the 331705 1-4 parameter combinations @@ -110186,13 +110194,13 @@ 51: Set rlist, assuming 4x4 atom pair-list, to 1.041 nm, buffer size 0.041 nm 51: Note that mdrun will redetermine rlist based on the actual pair-list setup 51: This run will generate roughly 0 Mb of data -51: [ OK ] GmxApiTest.SystemConstruction (1193 ms) +51: [ OK ] GmxApiTest.SystemConstruction (703 ms) 51: [ RUN ] GmxApiTest.SaneVersionComparisons 51: [ OK ] GmxApiTest.SaneVersionComparisons (0 ms) 51: [ RUN ] GmxApiTest.VersionNamed0_1_Features 51: [ OK ] GmxApiTest.VersionNamed0_1_Features (0 ms) 51: [ RUN ] GmxApiTest.RunnerBasicMD -51: Setting the LD random seed to -1376263 +51: Setting the LD random seed to 1056546618 51: Generated 331705 of the 331705 non-bonded parameter combinations 51: Generating 1-4 interactions: fudge = 0.5 51: Generated 331705 of the 331705 1-4 parameter combinations @@ -110240,13 +110248,16 @@ 51: 51: Writing final coordinates. 51: +51: NOTE: 13 % of the run time was spent in pair search, +51: you might want to increase nstlist (this has no effect on accuracy) +51: 51: Core t (s) Wall t (s) (%) -51: Time: 0.006 0.003 194.6 +51: Time: 0.003 0.002 193.0 51: (ns/day) (hour/ns) -51: Performance: 178.150 0.135 -51: [ OK ] GmxApiTest.RunnerBasicMD (951 ms) +51: Performance: 298.184 0.080 +51: [ OK ] GmxApiTest.RunnerBasicMD (719 ms) 51: [ RUN ] GmxApiTest.RunnerReinitialize -51: Setting the LD random seed to -581964035 +51: Setting the LD random seed to -2051840858 51: Generated 331705 of the 331705 non-bonded parameter combinations 51: Generating 1-4 interactions: fudge = 0.5 51: Generated 331705 of the 331705 1-4 parameter combinations @@ -110299,9 +110310,9 @@ 51: Writing final coordinates. 51: 51: Core t (s) Wall t (s) (%) -51: Time: 0.021 0.010 198.4 +51: Time: 0.004 0.002 194.4 51: (ns/day) (hour/ns) -51: Performance: 342.439 0.070 +51: Performance: 1687.316 0.014 51: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 51: log). 51: The current CPU can measure timings more accurately than the code in @@ -110324,12 +110335,12 @@ 51: Writing final coordinates. 51: 51: Core t (s) Wall t (s) (%) -51: Time: 0.020 0.010 198.1 +51: Time: 0.004 0.002 194.6 51: (ns/day) (hour/ns) -51: Performance: 351.967 0.068 -51: [ OK ] GmxApiTest.RunnerReinitialize (994 ms) +51: Performance: 1927.579 0.012 +51: [ OK ] GmxApiTest.RunnerReinitialize (722 ms) 51: [ RUN ] GmxApiTest.RunnerContinuedMD -51: Setting the LD random seed to 1738251418 +51: Setting the LD random seed to 532657694 51: Generated 331705 of the 331705 non-bonded parameter combinations 51: Generating 1-4 interactions: fudge = 0.5 51: Generated 331705 of the 331705 1-4 parameter combinations @@ -110378,9 +110389,9 @@ 51: Writing final coordinates. 51: 51: Core t (s) Wall t (s) (%) -51: Time: 0.043 0.021 199.0 +51: Time: 0.004 0.002 194.0 51: (ns/day) (hour/ns) -51: Performance: 86.405 0.278 +51: Performance: 966.205 0.025 51: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 51: log). 51: The current CPU can measure timings more accurately than the code in @@ -110404,16 +110415,13 @@ 51: 51: Writing final coordinates. 51: -51: NOTE: 80 % of the run time was spent in pair search, -51: you might want to increase nstlist (this has no effect on accuracy) -51: 51: Core t (s) Wall t (s) (%) -51: Time: 0.020 0.010 198.5 +51: Time: 0.004 0.002 194.2 51: (ns/day) (hour/ns) -51: Performance: 345.504 0.069 -51: [ OK ] GmxApiTest.RunnerContinuedMD (1194 ms) +51: Performance: 1670.063 0.014 +51: [ OK ] GmxApiTest.RunnerContinuedMD (716 ms) 51: [ RUN ] GmxApiTest.ApiRunnerStopSignalClient -51: Setting the LD random seed to -1052675 +51: Setting the LD random seed to -62917126 51: Generated 331705 of the 331705 non-bonded parameter combinations 51: Generating 1-4 interactions: fudge = 0.5 51: Generated 331705 of the 331705 1-4 parameter combinations @@ -110462,9 +110470,9 @@ 51: Writing final coordinates. 51: 51: Core t (s) Wall t (s) (%) -51: Time: 0.002 0.001 189.3 +51: Time: 0.003 0.001 192.2 51: (ns/day) (hour/ns) -51: Performance: 287.953 0.083 +51: Performance: 231.796 0.104 51: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 51: log). 51: The current CPU can measure timings more accurately than the code in @@ -110487,21 +110495,21 @@ 51: 2 steps, 0.0 ps. 51: 51: Core t (s) Wall t (s) (%) -51: Time: 0.002 0.001 187.8 +51: Time: 0.002 0.001 189.5 51: (ns/day) (hour/ns) -51: Performance: 324.376 0.074 -51: [ OK ] GmxApiTest.ApiRunnerStopSignalClient (1005 ms) -51: [----------] 8 tests from GmxApiTest (6202 ms total) +51: Performance: 354.781 0.068 +51: [ OK ] GmxApiTest.ApiRunnerStopSignalClient (719 ms) +51: [----------] 8 tests from GmxApiTest (4225 ms total) 51: 51: [----------] 1 test from GmxApiBasicTest 51: [ RUN ] GmxApiBasicTest.Status 51: [ OK ] GmxApiBasicTest.Status (0 ms) -51: [----------] 1 test from GmxApiBasicTest (3 ms total) +51: [----------] 1 test from GmxApiBasicTest (0 ms total) 51: 51: [----------] Global test environment tear-down -51: [==========] 9 tests from 2 test cases ran. (6205 ms total) +51: [==========] 9 tests from 2 test cases ran. (4225 ms total) 51: [ PASSED ] 9 tests. -51/54 Test #51: GmxapiExternalInterfaceTests ........ Passed 6.24 sec +51/54 Test #51: GmxapiExternalInterfaceTests ........ Passed 4.25 sec test 52 Start 52: GmxapiMpiTests @@ -110511,7 +110519,7 @@ 52: [----------] Global test environment set-up. 52: [----------] 8 tests from GmxApiTest 52: [ RUN ] GmxApiTest.ApiRunnerRestrainedMD -52: Setting the LD random seed to 1060417507 +52: Setting the LD random seed to -100835649 52: Generated 331705 of the 331705 non-bonded parameter combinations 52: Generating 1-4 interactions: fudge = 0.5 52: Generated 331705 of the 331705 1-4 parameter combinations @@ -110560,12 +110568,12 @@ 52: Writing final coordinates. 52: 52: Core t (s) Wall t (s) (%) -52: Time: 0.002 0.001 190.3 +52: Time: 0.003 0.002 192.4 52: (ns/day) (hour/ns) -52: Performance: 387.122 0.062 -52: [ OK ] GmxApiTest.ApiRunnerRestrainedMD (846 ms) +52: Performance: 302.992 0.079 +52: [ OK ] GmxApiTest.ApiRunnerRestrainedMD (773 ms) 52: [ RUN ] GmxApiTest.SystemConstruction -52: Setting the LD random seed to 2075912171 +52: Setting the LD random seed to -1149378625 52: Generated 331705 of the 331705 non-bonded parameter combinations 52: Generating 1-4 interactions: fudge = 0.5 52: Generated 331705 of the 331705 1-4 parameter combinations @@ -110592,13 +110600,13 @@ 52: Set rlist, assuming 4x4 atom pair-list, to 1.041 nm, buffer size 0.041 nm 52: Note that mdrun will redetermine rlist based on the actual pair-list setup 52: This run will generate roughly 0 Mb of data -52: [ OK ] GmxApiTest.SystemConstruction (939 ms) +52: [ OK ] GmxApiTest.SystemConstruction (671 ms) 52: [ RUN ] GmxApiTest.SaneVersionComparisons 52: [ OK ] GmxApiTest.SaneVersionComparisons (0 ms) 52: [ RUN ] GmxApiTest.VersionNamed0_1_Features 52: [ OK ] GmxApiTest.VersionNamed0_1_Features (0 ms) 52: [ RUN ] GmxApiTest.RunnerBasicMD -52: Setting the LD random seed to -151265417 +52: Setting the LD random seed to -86585857 52: Generated 331705 of the 331705 non-bonded parameter combinations 52: Generating 1-4 interactions: fudge = 0.5 52: Generated 331705 of the 331705 1-4 parameter combinations @@ -110647,12 +110655,12 @@ 52: Writing final coordinates. 52: 52: Core t (s) Wall t (s) (%) -52: Time: 0.002 0.001 190.1 +52: Time: 0.003 0.002 191.0 52: (ns/day) (hour/ns) -52: Performance: 399.956 0.060 -52: [ OK ] GmxApiTest.RunnerBasicMD (1097 ms) +52: Performance: 312.950 0.077 +52: [ OK ] GmxApiTest.RunnerBasicMD (668 ms) 52: [ RUN ] GmxApiTest.RunnerReinitialize -52: Setting the LD random seed to -7348241 +52: Setting the LD random seed to -805306406 52: Generated 331705 of the 331705 non-bonded parameter combinations 52: Generating 1-4 interactions: fudge = 0.5 52: Generated 331705 of the 331705 1-4 parameter combinations @@ -110705,9 +110713,9 @@ 52: Writing final coordinates. 52: 52: Core t (s) Wall t (s) (%) -52: Time: 0.004 0.002 193.6 +52: Time: 0.164 0.082 199.7 52: (ns/day) (hour/ns) -52: Performance: 1767.158 0.014 +52: Performance: 43.090 0.557 52: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 52: log). 52: The current CPU can measure timings more accurately than the code in @@ -110730,12 +110738,12 @@ 52: Writing final coordinates. 52: 52: Core t (s) Wall t (s) (%) -52: Time: 0.004 0.002 192.5 +52: Time: 0.157 0.079 199.7 52: (ns/day) (hour/ns) -52: Performance: 1828.012 0.013 -52: [ OK ] GmxApiTest.RunnerReinitialize (1217 ms) +52: Performance: 45.123 0.532 +52: [ OK ] GmxApiTest.RunnerReinitialize (1363 ms) 52: [ RUN ] GmxApiTest.RunnerContinuedMD -52: Setting the LD random seed to -1201143937 +52: Setting the LD random seed to -138676225 52: Generated 331705 of the 331705 non-bonded parameter combinations 52: Generating 1-4 interactions: fudge = 0.5 52: Generated 331705 of the 331705 1-4 parameter combinations @@ -110784,9 +110792,9 @@ 52: Writing final coordinates. 52: 52: Core t (s) Wall t (s) (%) -52: Time: 0.003 0.002 192.0 +52: Time: 0.004 0.002 191.8 52: (ns/day) (hour/ns) -52: Performance: 1219.561 0.020 +52: Performance: 802.068 0.030 52: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 52: log). 52: The current CPU can measure timings more accurately than the code in @@ -110811,12 +110819,12 @@ 52: Writing final coordinates. 52: 52: Core t (s) Wall t (s) (%) -52: Time: 0.028 0.014 199.0 +52: Time: 0.038 0.019 199.1 52: (ns/day) (hour/ns) -52: Performance: 248.771 0.096 -52: [ OK ] GmxApiTest.RunnerContinuedMD (1086 ms) +52: Performance: 186.405 0.129 +52: [ OK ] GmxApiTest.RunnerContinuedMD (3722 ms) 52: [ RUN ] GmxApiTest.ApiRunnerStopSignalClient -52: Setting the LD random seed to -604504961 +52: Setting the LD random seed to -612515842 52: Generated 331705 of the 331705 non-bonded parameter combinations 52: Generating 1-4 interactions: fudge = 0.5 52: Generated 331705 of the 331705 1-4 parameter combinations @@ -110865,9 +110873,9 @@ 52: Writing final coordinates. 52: 52: Core t (s) Wall t (s) (%) -52: Time: 0.002 0.001 189.7 +52: Time: 0.003 0.002 189.2 52: (ns/day) (hour/ns) -52: Performance: 263.363 0.091 +52: Performance: 205.573 0.117 52: Compiled SIMD: SSE4.1, but for this host/run AVX_256 might be better (see 52: log). 52: The current CPU can measure timings more accurately than the code in @@ -110890,11 +110898,11 @@ 52: 2 steps, 0.0 ps. 52: 52: Core t (s) Wall t (s) (%) -52: Time: 0.002 0.001 188.6 +52: Time: 0.003 0.002 189.3 52: (ns/day) (hour/ns) -52: Performance: 298.771 0.080 -52: [ OK ] GmxApiTest.ApiRunnerStopSignalClient (1277 ms) -52: [----------] 8 tests from GmxApiTest (6462 ms total) +52: Performance: 208.296 0.115 +52: [ OK ] GmxApiTest.ApiRunnerStopSignalClient (3436 ms) +52: [----------] 8 tests from GmxApiTest (10633 ms total) 52: 52: [----------] 1 test from GmxApiBasicTest 52: [ RUN ] GmxApiBasicTest.Status @@ -110902,9 +110910,9 @@ 52: [----------] 1 test from GmxApiBasicTest (0 ms total) 52: 52: [----------] Global test environment tear-down -52: [==========] 9 tests from 2 test cases ran. (6462 ms total) +52: [==========] 9 tests from 2 test cases ran. (10633 ms total) 52: [ PASSED ] 9 tests. -52/54 Test #52: GmxapiMpiTests ...................... Passed 6.51 sec +52/54 Test #52: GmxapiMpiTests ...................... Passed 10.68 sec test 53 Start 53: GmxapiInternalInterfaceTests @@ -110914,7 +110922,7 @@ 53: [----------] Global test environment set-up. 53: [----------] 2 tests from GmxApiTest 53: [ RUN ] GmxApiTest.BuildApiWorkflowImpl -53: Setting the LD random seed to -2088784135 +53: Setting the LD random seed to -222463793 53: Generated 331705 of the 331705 non-bonded parameter combinations 53: Generating 1-4 interactions: fudge = 0.5 53: Generated 331705 of the 331705 1-4 parameter combinations @@ -110941,9 +110949,9 @@ 53: Set rlist, assuming 4x4 atom pair-list, to 1.041 nm, buffer size 0.041 nm 53: Note that mdrun will redetermine rlist based on the actual pair-list setup 53: This run will generate roughly 0 Mb of data -53: [ OK ] GmxApiTest.BuildApiWorkflowImpl (1085 ms) +53: [ OK ] GmxApiTest.BuildApiWorkflowImpl (3103 ms) 53: [ RUN ] GmxApiTest.CreateApiWorkflow -53: Setting the LD random seed to 938470101 +53: Setting the LD random seed to -212248325 53: Generated 331705 of the 331705 non-bonded parameter combinations 53: Generating 1-4 interactions: fudge = 0.5 53: Generated 331705 of the 331705 1-4 parameter combinations @@ -110970,13 +110978,13 @@ 53: Set rlist, assuming 4x4 atom pair-list, to 1.041 nm, buffer size 0.041 nm 53: Note that mdrun will redetermine rlist based on the actual pair-list setup 53: This run will generate roughly 0 Mb of data -53: [ OK ] GmxApiTest.CreateApiWorkflow (621 ms) -53: [----------] 2 tests from GmxApiTest (1707 ms total) +53: [ OK ] GmxApiTest.CreateApiWorkflow (3143 ms) +53: [----------] 2 tests from GmxApiTest (6246 ms total) 53: 53: [----------] Global test environment tear-down -53: [==========] 2 tests from 1 test case ran. (1707 ms total) +53: [==========] 2 tests from 1 test case ran. (6246 ms total) 53: [ PASSED ] 2 tests. -53/54 Test #53: GmxapiInternalInterfaceTests ........ Passed 1.75 sec +53/54 Test #53: GmxapiInternalInterfaceTests ........ Passed 6.34 sec test 54 Start 54: GmxapiInternalsMpiTests @@ -110986,7 +110994,7 @@ 54: [----------] Global test environment set-up. 54: [----------] 2 tests from GmxApiTest 54: [ RUN ] GmxApiTest.BuildApiWorkflowImpl -54: Setting the LD random seed to -295081217 +54: Setting the LD random seed to -554504335 54: Generated 331705 of the 331705 non-bonded parameter combinations 54: Generating 1-4 interactions: fudge = 0.5 54: Generated 331705 of the 331705 1-4 parameter combinations @@ -111013,9 +111021,9 @@ 54: Set rlist, assuming 4x4 atom pair-list, to 1.041 nm, buffer size 0.041 nm 54: Note that mdrun will redetermine rlist based on the actual pair-list setup 54: This run will generate roughly 0 Mb of data -54: [ OK ] GmxApiTest.BuildApiWorkflowImpl (709 ms) +54: [ OK ] GmxApiTest.BuildApiWorkflowImpl (3314 ms) 54: [ RUN ] GmxApiTest.CreateApiWorkflow -54: Setting the LD random seed to 930796918 +54: Setting the LD random seed to -402723329 54: Generated 331705 of the 331705 non-bonded parameter combinations 54: Generating 1-4 interactions: fudge = 0.5 54: Generated 331705 of the 331705 1-4 parameter combinations @@ -111042,27 +111050,27 @@ 54: Set rlist, assuming 4x4 atom pair-list, to 1.041 nm, buffer size 0.041 nm 54: Note that mdrun will redetermine rlist based on the actual pair-list setup 54: This run will generate roughly 0 Mb of data -54: [ OK ] GmxApiTest.CreateApiWorkflow (657 ms) -54: [----------] 2 tests from GmxApiTest (1366 ms total) +54: [ OK ] GmxApiTest.CreateApiWorkflow (2923 ms) +54: [----------] 2 tests from GmxApiTest (6250 ms total) 54: 54: [----------] Global test environment tear-down -54: [==========] 2 tests from 1 test case ran. (1367 ms total) +54: [==========] 2 tests from 1 test case ran. (6250 ms total) 54: [ PASSED ] 2 tests. -54/54 Test #54: GmxapiInternalsMpiTests ............. Passed 1.39 sec +54/54 Test #54: GmxapiInternalsMpiTests ............. Passed 6.33 sec 100% tests passed, 0 tests failed out of 54 Label Time Summary: -GTest = 242.89 sec*proc (54 tests) -IntegrationTest = 76.34 sec*proc (12 tests) -MpiTest = 171.48 sec*proc (8 tests) -SlowTest = 144.19 sec*proc (2 tests) -UnitTest = 22.36 sec*proc (40 tests) +GTest = 224.54 sec*proc (54 tests) +IntegrationTest = 60.71 sec*proc (12 tests) +MpiTest = 171.84 sec*proc (8 tests) +SlowTest = 147.28 sec*proc (2 tests) +UnitTest = 16.55 sec*proc (40 tests) -Total Test time (real) = 242.97 sec +Total Test time (real) = 224.64 sec touch build-basic dh_testdir -/usr/bin/make -j16 -C build/mpich +/usr/bin/make -j15 -C build/mpich make[1]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' /usr/bin/cmake -S/build/reproducible-path/gromacs-2020.6 -B/build/reproducible-path/gromacs-2020.6/build/mpich --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/gromacs-2020.6/build/mpich/CMakeFiles /build/reproducible-path/gromacs-2020.6/build/mpich//CMakeFiles/progress.marks @@ -111070,93 +111078,110 @@ make[2]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/programs /build/reproducible-path/gromacs-2020.6/build/mpich/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= Scanning dependencies of target scanner -Scanning dependencies of target release-version-info -Scanning dependencies of target lmfit_objlib -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +Scanning dependencies of target release-version-info +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/programs /build/reproducible-path/gromacs-2020.6/build/mpich/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/parser.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/parser.cpp /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build +Scanning dependencies of target lmfit_objlib +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/parser.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/parser.cpp make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/mpich/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/mpich/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/scanner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/scanner.cpp -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build -Scanning dependencies of target modularsimulator -Scanning dependencies of target linearalgebra Scanning dependencies of target thread_mpi make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -std=c++14 -o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/lmfit/lmmin.cpp -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/errhandler.cpp +Scanning dependencies of target linearalgebra +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/tmpi_malloc.cpp make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build +Scanning dependencies of target mdrun_objlib +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/atomic.cpp Scanning dependencies of target tng_io_obj make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/linearalgebra && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/eigensolver.cpp -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -Scanning dependencies of target mdrun_objlib +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/lock.cpp /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/linearalgebra && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/gmx_arpack.cpp make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/errhandler.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/linearalgebra && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/gmx_arpack.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/pthreads.cpp make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/linearalgebra && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/matrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/matrix.cpp -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/programs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/mdrun.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/linearalgebra && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/matrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/matrix.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwlzh.c +Scanning dependencies of target modularsimulator make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/tmpi_malloc.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/linearalgebra && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/nrjac.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/nrjac.cpp -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/atomic.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwt.c +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/checkpointhelper.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/linearalgebra && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/sparsematrix.cpp -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/programs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/mdrun.cpp [ 0%] Built target release-version-info -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem 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CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/pthreads.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/system_error.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/system_error.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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-Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/nonbonded_bench.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/compositesimulatorelement.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/computeglobalselement.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/constraintelement.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/domdechelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/domdechelper.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/linearalgebra && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/nrjac.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/nrjac.cpp +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +[ 1%] Built target thread_mpi +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/energyelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/energyelement.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/linearalgebra && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include 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/build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/forceelement.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/freeenergyperturbationelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/freeenergyperturbationelement.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwt.c +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/modularsimulator.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/parrinellorahmanbarostat.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/pmeloadbalancehelper.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/propagator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/propagator.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/coder.c -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/dict.c +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/shellfcelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/shellfcelement.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/signallers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/signallers.cpp make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/statepropagatordata.cpp +[ 2%] Built target mdrun_objlib +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/topologyholder.cpp +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +[ 2%] Built target lmfit_objlib +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/trajectoryelement.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/vrescalethermostat.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/vrescalethermostat.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/dict.c cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/fixpoint.c cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/huffman.c -[ 1%] Built target thread_mpi -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/computeglobalselement.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/constraintelement.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/huffmem.c -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/domdechelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/domdechelper.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/lz77.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/lz77.c cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/merge_sort.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/merge_sort.c cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/mtf.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/mtf.c @@ -111169,23 +111194,6 @@ cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc3.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/xtc3.c cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/lib/tng_io.c cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/lib/md5.c -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/energyelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/energyelement.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/forceelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/forceelement.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/freeenergyperturbationelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/freeenergyperturbationelement.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/modularsimulator.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/parrinellorahmanbarostat.cpp -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/pmeloadbalancehelper.cpp -[ 2%] Built target mdrun_objlib -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/propagator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/propagator.cpp -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 2%] Built target lmfit_objlib -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/shellfcelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/shellfcelement.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/signallers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/signallers.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/statepropagatordata.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/topologyholder.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/trajectoryelement.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/vrescalethermostat.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/vrescalethermostat.cpp make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' [ 2%] Built target scanner make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' @@ -111598,11 +111606,11 @@ cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/nsgrid.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/perf_est.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/qm_gamess.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/qm_gaussian.cpp /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/forcerec.cpp: In function 'void __static_initialization_and_destruction_0(int, int)': /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/forcerec.cpp:103:16: warning: ignoring return value of 'char* getenv(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 103 | (getenv("GMX_GPU_PME_PP_COMMS") != nullptr) && GMX_THREAD_MPI && (GMX_GPU == GMX_GPU_CUDA); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/qm_gaussian.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/qm_mopac.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/qm_orca.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/qmmm.cpp @@ -111656,16 +111664,16 @@ cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_redistribute.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_solve.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_spline_work.cpp +/build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_only.cpp: In function 'void __static_initialization_and_destruction_0(int, int)': +/build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_only.cpp:104:16: warning: ignoring return value of 'char* getenv(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 104 | (getenv("GMX_GPU_PME_PP_COMMS") != nullptr) && GMX_THREAD_MPI && (GMX_GPU == GMX_GPU_CUDA); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_spread.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_gpu_program.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_pp_comm_gpu_impl.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_coordinate_receiver_gpu_impl.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_force_sender_gpu_impl.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_gpu_program_impl.cpp -/build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_only.cpp: In function 'void __static_initialization_and_destruction_0(int, int)': -/build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_only.cpp:104:16: warning: ignoring return value of 'char* getenv(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 104 | (getenv("GMX_GPU_PME_PP_COMMS") != nullptr) && GMX_THREAD_MPI && (GMX_GPU == GMX_GPU_CUDA); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fft/calcgrid.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/fft.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fft/fft.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fft/fft5d.cpp @@ -111807,123 +111815,123 @@ make[2]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/gromacs-2020.6/build/mpich/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -/usr/bin/make -j16 -C build/mpich-dp +/usr/bin/make -j15 -C build/mpich-dp make[1]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' /usr/bin/cmake -S/build/reproducible-path/gromacs-2020.6 -B/build/reproducible-path/gromacs-2020.6/build/mpich-dp --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/gromacs-2020.6/build/mpich-dp/CMakeFiles /build/reproducible-path/gromacs-2020.6/build/mpich-dp//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend -/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend -Scanning dependencies of target scanner -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend +Scanning dependencies of target scanner cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= -Scanning dependencies of target lmfit_objlib +Scanning dependencies of target release-version-info make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/selection && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/parser.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/parser.cpp -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build -Scanning dependencies of target release-version-info +/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build Scanning dependencies of target thread_mpi -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -std=c++14 -o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/lmfit/lmmin.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/selection && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/parser.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/parser.cpp make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +Scanning dependencies of target lmfit_objlib +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/mpich-dp/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/mpich-dp/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/selection && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/scanner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/scanner.cpp make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/programs /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -std=c++14 -o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/lmfit/lmmin.cpp make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend +Scanning dependencies of target linearalgebra +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +Scanning dependencies of target tng_io_obj cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/errhandler.cpp +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/programs /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/tmpi_malloc.cpp -cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/mpich-dp/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/mpich-dp/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwlzh.c +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/atomic.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwt.c +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/linearalgebra && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/eigensolver.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/lock.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/pthreads.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/coder.c Scanning dependencies of target modularsimulator -Scanning dependencies of target mdrun_objlib -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/system_error.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/system_error.cpp make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/linearalgebra && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/gmx_arpack.cpp /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build +Scanning dependencies of target mdrun_objlib make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +[ 0%] Built target release-version-info make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/checkpointhelper.cpp make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/programs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/mdrun.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/programs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/nonbonded_bench.cpp -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/compositesimulatorelement.cpp -Scanning dependencies of target linearalgebra -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build -Scanning dependencies of target tng_io_obj -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/linearalgebra && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/eigensolver.cpp -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwlzh.c -[ 0%] Built target release-version-info -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwt.c -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/coder.c +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/linearalgebra && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/matrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/matrix.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/pthreads.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/system_error.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/system_error.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/dict.c +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/programs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/nonbonded_bench.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/fixpoint.c cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/huffman.c +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/compositesimulatorelement.cpp +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/huffmem.c +[ 1%] Built target thread_mpi +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/computeglobalselement.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/linearalgebra && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/nrjac.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/nrjac.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/lz77.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/lz77.c +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/linearalgebra && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/sparsematrix.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o 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/build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/mtf.c -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/linearalgebra && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/gmx_arpack.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/rle.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/rle.c cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/tng_compress.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/tng_compress.c +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/constraintelement.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/vals16.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/vals16.c cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/warnmalloc.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/warnmalloc.c cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g 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/build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/computeglobalselement.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc2.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/xtc2.c +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/domdechelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/domdechelper.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat 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/build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/lib/tng_io.c -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/lib/md5.c -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/linearalgebra && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/matrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/matrix.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/linearalgebra && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 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/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/constraintelement.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/domdechelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/domdechelper.cpp +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +[ 1%] Built target lmfit_objlib cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/energyelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/energyelement.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/lib/md5.c cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/forceelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/forceelement.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/freeenergyperturbationelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/freeenergyperturbationelement.cpp -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -[ 1%] Built target lmfit_objlib cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/modularsimulator.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/parrinellorahmanbarostat.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/pmeloadbalancehelper.cpp make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' [ 2%] Built target mdrun_objlib +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/pmeloadbalancehelper.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/propagator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/propagator.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/shellfcelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/shellfcelement.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/signallers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/signallers.cpp @@ -111932,10 +111940,10 @@ cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/trajectoryelement.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/vrescalethermostat.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/vrescalethermostat.cpp make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -[ 2%] Built target scanner -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' [ 2%] Built target linearalgebra make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +[ 2%] Built target scanner +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' [ 5%] Built target tng_io_obj make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' [ 8%] Built target modularsimulator @@ -112343,12 +112351,12 @@ cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/nsgrid.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/perf_est.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/qm_gamess.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/qm_gaussian.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/qm_mopac.cpp /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/forcerec.cpp: In function 'void __static_initialization_and_destruction_0(int, int)': /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/forcerec.cpp:103:16: warning: ignoring return value of 'char* getenv(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 103 | (getenv("GMX_GPU_PME_PP_COMMS") != nullptr) && GMX_THREAD_MPI && (GMX_GPU == GMX_GPU_CUDA); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/qm_gaussian.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/qm_mopac.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/qm_orca.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/qmmm.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/rbin.cpp @@ -112403,12 +112411,12 @@ cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_spline_work.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_spread.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_gpu_program.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_pp_comm_gpu_impl.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_coordinate_receiver_gpu_impl.cpp /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_only.cpp: In function 'void __static_initialization_and_destruction_0(int, int)': /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_only.cpp:104:16: warning: ignoring return value of 'char* getenv(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 104 | (getenv("GMX_GPU_PME_PP_COMMS") != nullptr) && GMX_THREAD_MPI && (GMX_GPU == GMX_GPU_CUDA); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_pp_comm_gpu_impl.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_coordinate_receiver_gpu_impl.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_force_sender_gpu_impl.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_gpu_program_impl.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/mpich-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/mpich-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fft/calcgrid.cpp @@ -112555,7 +112563,7 @@ sed -e 's/#MPIABBR#/mpich/g' -e 's/#MPIPROG#/MPICH/g' \ < debian/gromacs-parallel.README.Debian.in \ > debian/gromacs-mpich.README.Debian -/usr/bin/make -j16 -C build/mpich tests +/usr/bin/make -j15 -C build/mpich tests make[1]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' /usr/bin/cmake -S/build/reproducible-path/gromacs-2020.6 -B/build/reproducible-path/gromacs-2020.6/build/mpich --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/make -f CMakeFiles/Makefile2 tests @@ -112565,70 +112573,70 @@ /usr/bin/make -f CMakeFiles/Makefile2 CMakeFiles/tests.dir/all make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend +/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= -/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend -make[4]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/mpich/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/mpich/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build +make[4]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build +[ 0%] Built target scanner /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[4]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 0%] Built target scanner make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[4]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 0%] Built target release-version-info -[ 0%] Built target lmfit_objlib /usr/bin/make -f src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build.make src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/depend -[ 2%] Built target tng_io_obj +[ 0%] Built target lmfit_objlib +[ 0%] Built target release-version-info make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 3%] Built target thread_mpi cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/external/googletest/googlemock/gtest /build/reproducible-path/gromacs-2020.6/build/mpich/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/DependInfo.cmake --color= -[ 3%] Built target linearalgebra +[ 1%] Built target thread_mpi +[ 1%] Built target linearalgebra +[ 3%] Built target tng_io_obj [ 5%] Built target modularsimulator /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend Scanning dependencies of target gtest @@ -112701,102 +112709,100 @@ [ 76%] Built target testutils /usr/bin/make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/DependInfo.cmake --color= /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/testutils/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/DependInfo.cmake --color= /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/testutils/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/testutils/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/testutils/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend -Scanning dependencies of target testutils-mpi-test -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -Scanning dependencies of target selection-test -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -/usr/bin/make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/indexutil.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/indexutil.cpp /usr/bin/make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/mpitest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/nbsearch.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/nbsearch.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/poscalc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/poscalc.cpp /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectioncollection.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/selectioncollection.cpp +Scanning dependencies of target testutils-mpi-test +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= +/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/mpitest.cpp /usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/domdec/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +Scanning dependencies of target selection-test Scanning dependencies of target utility-mpi-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' Scanning dependencies of target testutils-test -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/domdec/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectionoption.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/selectionoption.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/physicalnodecommunicator_mpi.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +/usr/bin/make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/toputils.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/toputils.cpp +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/indexutil.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/indexutil.cpp +/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/interactivetest.cpp -/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/nbsearch.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/nbsearch.cpp make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= -Scanning dependencies of target onlinehelp-test-shared -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/physicalnodecommunicator_mpi.cpp +/usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/refdata_tests.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/poscalc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/poscalc.cpp make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/mock_helptopic.cpp -Scanning dependencies of target applied_forces-test -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fft/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fft/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color= Scanning dependencies of target domdec-test -/usr/bin/make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build -Scanning dependencies of target mdlib-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +Scanning dependencies of target onlinehelp-test-shared /usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfitting.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/domdec/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests/hashedmap.cpp +Scanning dependencies of target applied_forces-test make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/calc_verletbuf.cpp -Scanning dependencies of target ewald-test +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/mock_helptopic.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build +/usr/bin/make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmebsplinetest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfitting.cpp Scanning dependencies of target utility-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/alignedallocator.cpp -/usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fft/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fft/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color= Scanning dependencies of target fft-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' /usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build +Scanning dependencies of target ewald-test make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fft/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fft/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/fft.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fft/tests/fft.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/alignedallocator.cpp +Scanning dependencies of target mdlib-test +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmebsplinetest.cpp +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/calc_verletbuf.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfittingoptions.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../lib/libgtest.a -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constr.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constr.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' [ 77%] Built target testutils-mpi-test @@ -112810,18 +112816,20 @@ cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/gputest.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constrtestdata.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/testasserts_tests.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/clfftinitializer.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +[ 77%] Built target utility-mpi-test /usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/hardware/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/hardware/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/domdec/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests/localatomsetmanager.cpp Scanning dependencies of target hardware-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' /usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/hardware/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/hardware/tests/hardwaretopology.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/refdata_tests.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfittingoptions.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/clfftinitializer.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectioncollection.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/selectioncollection.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/cmake -P CMakeFiles/onlinehelp-test-shared.dir/cmake_clean_target.cmake cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test-shared.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libonlinehelp-test-shared.a CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o @@ -112829,36 +112837,41 @@ make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' [ 77%] Built target onlinehelp-test-shared /usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfittingamplitudelookup.cpp make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 77%] Built target utility-mpi-test -/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= Scanning dependencies of target math-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fft/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fft/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp /usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/domdec/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests/localatomsetmanager.cpp make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/arrayrefwithpadding.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/hostallocator.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmegathertest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/domdec/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +[ 77%] Built target fft-test +/usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= Scanning dependencies of target mdrunutility-test-shared make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/hostallocator.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/coordinatetransformation.cpp -cd 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-Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constrtestrunners.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmegathertest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/domdec/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectionoption.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/selectionoption.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/electricfield.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/hardware/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfit.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/densityfit.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/xvgtest_tests.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/toputils.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/toputils.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 77%] Built target fft-test +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +[ 77%] Built target domdec-test /usr/bin/make -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/DependInfo.cmake --color= @@ -112867,67 +112880,59 @@ /usr/bin/make -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/accessor_policy.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/ebin.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/ebin.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/cmake -P CMakeFiles/mdrunutility-test-shared.dir/cmake_clean_target.cmake -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test-shared.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread -/usr/bin/ar qc ../../../../lib/libmdrunutility-test-shared.a CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -/usr/bin/ranlib ../../../../lib/libmdrunutility-test-shared.a -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/devicetransfers.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 -[ 78%] Built target mdrunutility-test-shared +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/arrayref.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/bitmask32.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../lib/libgtest.a -lpthread +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +[ 77%] Built target hardware-test /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color= -/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread Scanning dependencies of target onlinehelp-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/helpformat.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constrtestdata.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/coordinatetransformation.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extents.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/extents.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/helpmanager.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 78%] Built target domdec-test +[ 77%] Built target testutils-test /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake --color= -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' Scanning dependencies of target options-test -[ 78%] Built target hardware-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -/usr/bin/make -f src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build.make src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/pbcutil/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pbcutil/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/abstractoptionstorage.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied_forces-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied_forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/cmake -P CMakeFiles/mdrunutility-test-shared.dir/cmake_clean_target.cmake +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test-shared.dir/link.txt --verbose=1 +/usr/bin/ar qc ../../../../lib/libmdrunutility-test-shared.a CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o +/usr/bin/ranlib ../../../../lib/libmdrunutility-test-shared.a +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +[ 78%] Built target mdrunutility-test-shared +/usr/bin/make -f src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build.make src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/pbcutil/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pbcutil/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/DependInfo.cmake --color= Scanning dependencies of target pbcutil-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' /usr/bin/make -f src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build.make src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pbcutil/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/pbc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/pbcutil/tests/pbc.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/arrayref.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extents.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/extents.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/energyoutput.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/expanded.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/expanded.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/helpmanager.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfittingamplitudelookup.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pbcutil/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/pbcutil/tests/pbcenums.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/testasserts_tests.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/helpwritercontext.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/dofit.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/dofit.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pbcutil/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extensions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/extensions.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmesolvetest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pbcutil/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pbcutil-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pbcutil-test.dir/pbc.cpp.o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pbcutil-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/exponentialmovingaverage.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/electricfield.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/functions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/functions.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/xvgtest_tests.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 78%] Built target pbcutil-test +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +[ 78%] Built target applied_forces-test /usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake --color= @@ -112936,15 +112941,18 @@ /usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/exponentialdistribution.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pbcutil/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/pbcutil/tests/pbcenums.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constrtestrunners.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extensions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/extensions.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/bitmask64.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/filenameoption.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/bitmask128.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pbcutil/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/gausstransform.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/gausstransform.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/layouts.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/layouts.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmesplinespreadtest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/leapfrog.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../lib/libgtest.a -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/ebin.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/ebin.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pbcutil/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pbcutil-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pbcutil-test.dir/pbc.cpp.o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pbcutil-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' [ 79%] Built target onlinehelp-test /usr/bin/make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend @@ -112955,10 +112963,8 @@ /usr/bin/make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/restraint/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/restraintpotential-test.dir/manager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/restraint/tests/manager.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/selection-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/selection-test.dir/indexutil.cpp.o CMakeFiles/selection-test.dir/nbsearch.cpp.o CMakeFiles/selection-test.dir/poscalc.cpp.o CMakeFiles/selection-test.dir/selectioncollection.cpp.o CMakeFiles/selection-test.dir/selectionoption.cpp.o CMakeFiles/selection-test.dir/toputils.cpp.o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/selection-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 79%] Built target testutils-test +[ 79%] Built target pbcutil-test /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/tables/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/tables/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake --color= @@ -112967,14 +112973,21 @@ /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/tables/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/tables/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/tables/tests/splinetable.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfittingforce.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/densityfittingforce.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/gammadistribution.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/mdspan.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/mdspan.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/layouts.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/layouts.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmesolvetest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfit.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/densityfit.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/energyoutput.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/restraint/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/leapfrogtestdata.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/cstringutil.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/cstringutil.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/filenameoptionmanager.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/defaultinitializationallocator.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/mdspan.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/mdspan.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/enumerationhelpers.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 80%] Built target selection-test +[ 79%] Built target restraintpotential-test /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/taskassignment/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/taskassignment/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake --color= @@ -112983,14 +112996,20 @@ /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/taskassignment/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/taskassignment/tests/usergpuids.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/applied_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied_forces-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied_forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/leapfrogtestrunners.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/normaldistribution.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/fixedcapacityvector.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/option.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/option.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/expanded.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/expanded.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/selection-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/selection-test.dir/indexutil.cpp.o CMakeFiles/selection-test.dir/nbsearch.cpp.o CMakeFiles/selection-test.dir/poscalc.cpp.o CMakeFiles/selection-test.dir/selectioncollection.cpp.o CMakeFiles/selection-test.dir/selectionoption.cpp.o CMakeFiles/selection-test.dir/toputils.cpp.o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/selection-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/dofit.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/dofit.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/optionsassigner.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/inmemoryserializer.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/keyvaluetreeserializer.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 80%] Built target restraintpotential-test +[ 80%] Built target selection-test /usr/bin/make -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/topology/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/DependInfo.cmake --color= @@ -112999,70 +113018,83 @@ /usr/bin/make -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/topology/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/exclusionblocks.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests/exclusionblocks.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/matrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/matrix.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/filenameoption.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmesplinespreadtest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/seed.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/seed.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/exponentialmovingaverage.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/keyvaluetreetransform.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settle.cpp -[ 80%] Built target applied_forces-test -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settletestdata.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/multidimarray.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/multidimarray.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settletestrunners.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/shake.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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-I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/symtab.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests/symtab.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" 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CMakeFiles/mdlib-test.dir/settle.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settle.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/physicalnodecommunicator.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settletestdata.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/stringutil.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/tables/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/tables/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/textreader.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settletestrunners.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/threefry.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/threefry.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/topology/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/topology-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/topology-test.dir/exclusionblocks.cpp.o CMakeFiles/topology-test.dir/mtop.cpp.o CMakeFiles/topology-test.dir/symtab.cpp.o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/topology-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmetestcommon.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/timeunitmanager.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/shake.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/simulationsignal.cpp +[ 82%] Built target topology-test +[ 82%] Built target table-test /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/pulling/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pulling/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/awh/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake --color= Scanning dependencies of target pull-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pulling/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pull-test.dir/pull.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/pulling/tests/pull.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/bitmask64.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/testhardwarecontexts.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 81%] Built target taskassignment-test -/usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/awh/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/tabulatednormaldistribution.cpp Scanning dependencies of target awh-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/bias.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests/bias.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests/biasstate.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c 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/usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/constr.cpp.o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o CMakeFiles/mdlib-test.dir/ebin.cpp.o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o CMakeFiles/mdlib-test.dir/expanded.cpp.o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/bitmask128.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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-fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/treesupport.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/gausstransform.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/gausstransform.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/testhardwarecontexts.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pulling/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/updategroups.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/typetraits.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/updategroupscog.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdspan-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o CMakeFiles/mdspan-test.dir/extents.cpp.o CMakeFiles/mdspan-test.dir/extensions.cpp.o CMakeFiles/mdspan-test.dir/layouts.cpp.o CMakeFiles/mdspan-test.dir/mdspan.cpp.o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdspan-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 82%] Built target topology-test +[ 82%] Built target mdspan-test /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake --color= @@ -113071,15 +113103,10 @@ /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/bootstrap_loadstore.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/cstringutil.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/cstringutil.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/defaultinitializationallocator.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/tables/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/tables/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/uniformintdistribution.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 83%] Built target ewald-test +[ 83%] Built target pull-test /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/compat/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake --color= @@ -113088,11 +113115,18 @@ /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/compat/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -Wno-unused-member-function -o CMakeFiles/compat-test.dir/optional.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests/optional.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/enumerationhelpers.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/fixedcapacityvector.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/base.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/base.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/uniformrealdistribution.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfittingforce.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/densityfittingforce.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/constr.cpp.o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o CMakeFiles/mdlib-test.dir/ebin.cpp.o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o CMakeFiles/mdlib-test.dir/expanded.cpp.o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/invertmatrix.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/matrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/matrix.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 84%] Built target pull-test +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/base.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/base.cpp +[ 84%] Built target ewald-test /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake --color= @@ -113101,38 +113135,57 @@ /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/confio.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/multidimarray.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/multidimarray.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/paddedvector.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/filemd5.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests/biasstate.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/vectypes.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_floatingpoint.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' [ 86%] Built target mdlib-test +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/mrcserializer.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/grid.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests/grid.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/mrcdensitymap.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +[ 87%] Built target random-test +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp /usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/inmemoryserializer.cpp make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/mrcdensitymapheader.cpp Scanning dependencies of target commandline-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/grid.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests/grid.cpp /usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/threefry.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/threefry.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_floatingpoint_util.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 86%] Built target table-test +[ 88%] Built target options-test /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/keyvaluetreeserializer.cpp Scanning dependencies of target mdrunutility-mpi-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests/threadaffinity_mpi.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/option.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/option.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdspan/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdspan-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o CMakeFiles/mdspan-test.dir/extents.cpp.o CMakeFiles/mdspan-test.dir/extensions.cpp.o CMakeFiles/mdspan-test.dir/layouts.cpp.o CMakeFiles/mdspan-test.dir/mdspan.cpp.o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdspan-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/readinp.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_vector_operations.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/fileioxdrserializer.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/utility-test.dir/alignedallocator.cpp.o CMakeFiles/utility-test.dir/arrayref.cpp.o CMakeFiles/utility-test.dir/bitmask32.cpp.o CMakeFiles/utility-test.dir/bitmask64.cpp.o CMakeFiles/utility-test.dir/bitmask128.cpp.o CMakeFiles/utility-test.dir/cstringutil.cpp.o CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o CMakeFiles/utility-test.dir/logger.cpp.o CMakeFiles/utility-test.dir/mutex.cpp.o CMakeFiles/utility-test.dir/path.cpp.o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o CMakeFiles/utility-test.dir/stringutil.cpp.o CMakeFiles/utility-test.dir/textreader.cpp.o CMakeFiles/utility-test.dir/textwriter.cpp.o CMakeFiles/utility-test.dir/typetraits.cpp.o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 86%] Built target mdspan-test +[ 89%] Built target awh-test /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake --color= @@ -113141,105 +113194,60 @@ /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests/threadaffinity.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/keyvaluetreetransform.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/logger.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/logger.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/compat/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests/pointers.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 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-DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/mrcserializer.cpp -[ 87%] Built target awh-test -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o 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-I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/mrcdensitymap.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 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../../../../lib/libgtest.a -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops 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-DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/textreader.cpp -[ 87%] Built target mdrunutility-mpi-test -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/textwriter.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o CMakeFiles/math-test.dir/densityfit.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/gausstransform.cpp.o CMakeFiles/math-test.dir/densityfittingforce.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/matrix.cpp.o CMakeFiles/math-test.dir/multidimarray.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/mrcdensitymapheader.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/typetraits.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 89%] Built target math-test -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/repeatingsection.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/timeunitmanager.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 89%] Built target mdrunutility-test -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/uniformrealdistribution.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/treesupport.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/readinp.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/fileioxdrserializer.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_vector_operations.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security 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/build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/string_view.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests/string_view.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem 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-DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_math.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests && 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-fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_memory.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/compat/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem 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/build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_integer.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' 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../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a -lpthread cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/filemd5.cpp.o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlineparser.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +[ 92%] Built target mdrunutility-mpi-test +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/compat/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/filenm.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/filenm.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/pargs.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 90%] Built target random-test +[ 93%] Built target fileio-test cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 91%] Built target fileio-test -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_integer.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4.cpp +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a -lpthread cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4_floatingpoint.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4_vector_operations.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4_math.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +[ 93%] Built target mdrunutility-test cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/scalar.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/scalar_util.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/scalar_math.cpp cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/mpich/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/utility-test.dir/alignedallocator.cpp.o CMakeFiles/utility-test.dir/arrayref.cpp.o CMakeFiles/utility-test.dir/bitmask32.cpp.o CMakeFiles/utility-test.dir/bitmask64.cpp.o CMakeFiles/utility-test.dir/bitmask128.cpp.o CMakeFiles/utility-test.dir/cstringutil.cpp.o CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o CMakeFiles/utility-test.dir/logger.cpp.o CMakeFiles/utility-test.dir/mutex.cpp.o CMakeFiles/utility-test.dir/path.cpp.o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o CMakeFiles/utility-test.dir/stringutil.cpp.o CMakeFiles/utility-test.dir/textreader.cpp.o CMakeFiles/utility-test.dir/textwriter.cpp.o CMakeFiles/utility-test.dir/typetraits.cpp.o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 92%] Built target options-test -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 95%] Built target utility-test cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/filenm.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 96%] Built target commandline-test -cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/compat-test.dir/optional.cpp.o CMakeFiles/compat-test.dir/pointers.cpp.o CMakeFiles/compat-test.dir/string_view.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread +[ 94%] Built target commandline-test cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +[ 96%] Built target simd-test +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/compat-test.dir/optional.cpp.o CMakeFiles/compat-test.dir/pointers.cpp.o CMakeFiles/compat-test.dir/string_view.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread +cd /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o CMakeFiles/math-test.dir/densityfit.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/gausstransform.cpp.o CMakeFiles/math-test.dir/densityfittingforce.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/matrix.cpp.o CMakeFiles/math-test.dir/multidimarray.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.so ../../../../lib/libgtest.a -lpthread +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' [ 97%] Built target compat-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[100%] Built target simd-test +[100%] Built target math-test /usr/bin/make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/CMakeFiles/tests.dir/DependInfo.cmake --color= @@ -113276,34 +113284,34 @@ 1: [----------] Global test environment set-up. 1: [----------] 10 tests from InteractiveTestHelperTest 1: [ RUN ] InteractiveTestHelperTest.ChecksSimpleSession -1: [ OK ] InteractiveTestHelperTest.ChecksSimpleSession (0 ms) +1: [ OK ] InteractiveTestHelperTest.ChecksSimpleSession (11 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline -1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline (4 ms) +1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline (0 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput -1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput (1 ms) +1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput 1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsIncorrectOutput -1: [ OK ] InteractiveTestHelperTest.DetectsIncorrectOutput (0 ms) +1: [ OK ] InteractiveTestHelperTest.DetectsIncorrectOutput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingOutput 1: [ OK ] InteractiveTestHelperTest.DetectsMissingOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingFinalOutput -1: [ OK ] InteractiveTestHelperTest.DetectsMissingFinalOutput (1 ms) +1: [ OK ] InteractiveTestHelperTest.DetectsMissingFinalOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsExtraOutput -1: [ OK ] InteractiveTestHelperTest.DetectsExtraOutput (0 ms) +1: [ OK ] InteractiveTestHelperTest.DetectsExtraOutput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingInput 1: [ OK ] InteractiveTestHelperTest.DetectsMissingInput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsExtraInput 1: [ OK ] InteractiveTestHelperTest.DetectsExtraInput (0 ms) -1: [----------] 10 tests from InteractiveTestHelperTest (6 ms total) +1: [----------] 10 tests from InteractiveTestHelperTest (14 ms total) 1: 1: [----------] 34 tests from ReferenceDataTest 1: [ RUN ] ReferenceDataTest.HandlesSimpleData -1: [ OK ] ReferenceDataTest.HandlesSimpleData (1 ms) +1: [ OK ] ReferenceDataTest.HandlesSimpleData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesFloatingPointData 1: [ OK ] ReferenceDataTest.HandlesFloatingPointData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesPresenceChecks -1: [ OK ] ReferenceDataTest.HandlesPresenceChecks (0 ms) +1: [ OK ] ReferenceDataTest.HandlesPresenceChecks (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesStringBlockData 1: [ OK ] ReferenceDataTest.HandlesStringBlockData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVectorData @@ -113313,9 +113321,9 @@ 1: [ RUN ] ReferenceDataTest.HandlesSequenceOfCustomData 1: [ OK ] ReferenceDataTest.HandlesSequenceOfCustomData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesIncorrectData -1: [ OK ] ReferenceDataTest.HandlesIncorrectData (1 ms) +1: [ OK ] ReferenceDataTest.HandlesIncorrectData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesIncorrectDataType -1: [ OK ] ReferenceDataTest.HandlesIncorrectDataType (0 ms) +1: [ OK ] ReferenceDataTest.HandlesIncorrectDataType (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesMissingData 1: [ OK ] ReferenceDataTest.HandlesMissingData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedData @@ -113323,13 +113331,13 @@ 1: [ RUN ] ReferenceDataTest.HandlesUncheckedDataInSequence 1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInSequence (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedDataInCompound -1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInCompound (4 ms) +1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInCompound (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesAnys 1: [ OK ] ReferenceDataTest.HandlesAnys (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTree -1: [ OK ] ReferenceDataTest.HandlesKeyValueTree (1 ms) +1: [ OK ] ReferenceDataTest.HandlesKeyValueTree (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeExtraKey -1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeExtraKey (0 ms) +1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeExtraKey (11 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeMissingKey 1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeMissingKey (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesAnysWithIncorrectValue @@ -113339,11 +113347,11 @@ 1: [ RUN ] ReferenceDataTest.HandlesMissingReferenceDataFile 1: [ OK ] ReferenceDataTest.HandlesMissingReferenceDataFile (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSpecialCharactersInStrings -1: [ OK ] ReferenceDataTest.HandlesSpecialCharactersInStrings (1 ms) +1: [ OK ] ReferenceDataTest.HandlesSpecialCharactersInStrings (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace 1: [ OK ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesEmptyStrings -1: [ OK ] ReferenceDataTest.HandlesEmptyStrings (0 ms) +1: [ OK ] ReferenceDataTest.HandlesEmptyStrings (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock 1: [ OK ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceItemIndices @@ -113351,9 +113359,9 @@ 1: [ RUN ] ReferenceDataTest.HandlesMultipleChecksAgainstSameData 1: [ OK ] ReferenceDataTest.HandlesMultipleChecksAgainstSameData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleNullIds -1: [ OK ] ReferenceDataTest.HandlesMultipleNullIds (1 ms) +1: [ OK ] ReferenceDataTest.HandlesMultipleNullIds (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds -1: [ OK ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds (0 ms) +1: [ OK ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesReadingValues 1: [ OK ] ReferenceDataTest.HandlesReadingValues (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges @@ -113363,10 +113371,10 @@ 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges -1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges (0 ms) +1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries -1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries (1 ms) -1: [----------] 34 tests from ReferenceDataTest (10 ms total) +1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries (0 ms) +1: [----------] 34 tests from ReferenceDataTest (17 ms total) 1: 1: [----------] 7 tests from FloatingPointDifferenceTest 1: [ RUN ] FloatingPointDifferenceTest.HandlesEqualValues @@ -113400,17 +113408,17 @@ 1: [ RUN ] XvgTests.CreateFile 1: [ OK ] XvgTests.CreateFile (0 ms) 1: [ RUN ] XvgTests.CheckMissing -1: [ OK ] XvgTests.CheckMissing (4 ms) +1: [ OK ] XvgTests.CheckMissing (1 ms) 1: [ RUN ] XvgTests.CheckExtra -1: [ OK ] XvgTests.CheckExtra (1 ms) +1: [ OK ] XvgTests.CheckExtra (0 ms) 1: [ RUN ] XvgTests.ReadIncorrect 1: [ OK ] XvgTests.ReadIncorrect (0 ms) -1: [----------] 4 tests from XvgTests (5 ms total) +1: [----------] 4 tests from XvgTests (1 ms total) 1: 1: [----------] Global test environment tear-down -1: [==========] 59 tests from 5 test cases ran. (21 ms total) +1: [==========] 59 tests from 5 test cases ran. (32 ms total) 1: [ PASSED ] 59 tests. - 1/30 Test #1: TestUtilsUnitTests ............... Passed 0.07 sec + 1/30 Test #1: TestUtilsUnitTests ............... Passed 0.13 sec test 2 Start 2: TestUtilsMpiUnitTests @@ -113420,13 +113428,13 @@ 2: [----------] Global test environment set-up. 2: [----------] 1 test from MpiSelfTest 2: [ RUN ] MpiSelfTest.Runs -2: [ OK ] MpiSelfTest.Runs (5 ms) -2: [----------] 1 test from MpiSelfTest (13 ms total) +2: [ OK ] MpiSelfTest.Runs (12 ms) +2: [----------] 1 test from MpiSelfTest (16 ms total) 2: 2: [----------] Global test environment tear-down -2: [==========] 1 test from 1 test case ran. (13 ms total) +2: [==========] 1 test from 1 test case ran. (16 ms total) 2: [ PASSED ] 1 test. - 2/30 Test #2: TestUtilsMpiUnitTests ............ Passed 0.18 sec + 2/30 Test #2: TestUtilsMpiUnitTests ............ Passed 0.21 sec test 3 Start 3: UtilityUnitTests @@ -113651,7 +113659,7 @@ 3: [ OK ] ArrayRefTest/5.ConstructFromNonConstVectorWorks (0 ms) 3: [ RUN ] ArrayRefTest/5.ConstructFromStructFieldWithTemplateConstructorWorks 3: [ OK ] ArrayRefTest/5.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -3: [----------] 9 tests from ArrayRefTest/5 (5 ms total) +3: [----------] 9 tests from ArrayRefTest/5 (0 ms total) 3: 3: [----------] 9 tests from ArrayRefTest/6, where TypeParam = gmx::ArrayRef 3: [ RUN ] ArrayRefTest/6.MakeWithAssignmentWorks @@ -113756,7 +113764,7 @@ 3: [ OK ] ArrayRefTest/10.ConstructFromNonConstVectorWorks (0 ms) 3: [ RUN ] ArrayRefTest/10.ConstructFromStructFieldWithTemplateConstructorWorks 3: [ OK ] ArrayRefTest/10.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -3: [----------] 9 tests from ArrayRefTest/10 (1 ms total) +3: [----------] 9 tests from ArrayRefTest/10 (0 ms total) 3: 3: [----------] 9 tests from ArrayRefTest/11, where TypeParam = gmx::ArrayRef 3: [ RUN ] ArrayRefTest/11.MakeWithAssignmentWorks @@ -113806,7 +113814,7 @@ 3: [ RUN ] ArrayRefTest/13.MakeWithNonConstAssignmentWorks 3: [ OK ] ArrayRefTest/13.MakeWithNonConstAssignmentWorks (0 ms) 3: [ RUN ] ArrayRefTest/13.ConstructWithTemplateConstructorWorks -3: [ OK ] ArrayRefTest/13.ConstructWithTemplateConstructorWorks (0 ms) +3: [ OK ] ArrayRefTest/13.ConstructWithTemplateConstructorWorks (1 ms) 3: [ RUN ] ArrayRefTest/13.ConstructWithNonConstTemplateConstructorWorks 3: [ OK ] ArrayRefTest/13.ConstructWithNonConstTemplateConstructorWorks (0 ms) 3: [ RUN ] ArrayRefTest/13.ConstructFromPointersWorks @@ -113819,7 +113827,7 @@ 3: [ OK ] ArrayRefTest/13.ConstructFromNonConstVectorWorks (0 ms) 3: [ RUN ] ArrayRefTest/13.ConstructFromStructFieldWithTemplateConstructorWorks 3: [ OK ] ArrayRefTest/13.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -3: [----------] 9 tests from ArrayRefTest/13 (0 ms total) +3: [----------] 9 tests from ArrayRefTest/13 (1 ms total) 3: 3: [----------] 9 tests from ArrayRefTest/14, where TypeParam = gmx::ArrayRef 3: [ RUN ] ArrayRefTest/14.MakeWithAssignmentWorks @@ -113924,7 +113932,7 @@ 3: [ OK ] ArrayRefTest/18.ConstructFromNonConstVectorWorks (0 ms) 3: [ RUN ] ArrayRefTest/18.ConstructFromStructFieldWithTemplateConstructorWorks 3: [ OK ] ArrayRefTest/18.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -3: [----------] 9 tests from ArrayRefTest/18 (1 ms total) +3: [----------] 9 tests from ArrayRefTest/18 (0 ms total) 3: 3: [----------] 9 tests from ArrayRefTest/19, where TypeParam = gmx::ArrayRef 3: [ RUN ] ArrayRefTest/19.MakeWithAssignmentWorks @@ -114008,9 +114016,9 @@ 3: 3: [----------] 4 tests from KeyValueTreeSerializerTest 3: [ RUN ] KeyValueTreeSerializerTest.EmptyTree -3: [ OK ] KeyValueTreeSerializerTest.EmptyTree (0 ms) +3: [ OK ] KeyValueTreeSerializerTest.EmptyTree (1 ms) 3: [ RUN ] KeyValueTreeSerializerTest.SimpleObject -3: [ OK ] KeyValueTreeSerializerTest.SimpleObject (1 ms) +3: [ OK ] KeyValueTreeSerializerTest.SimpleObject (0 ms) 3: [ RUN ] KeyValueTreeSerializerTest.ObjectWithArrays 3: [ OK ] KeyValueTreeSerializerTest.ObjectWithArrays (0 ms) 3: [ RUN ] KeyValueTreeSerializerTest.ObjectWithObjects @@ -114023,14 +114031,14 @@ 3: [ RUN ] TreeValueTransformTest.SimpleTransformsCaseAndDashInsensitive 3: [ OK ] TreeValueTransformTest.SimpleTransformsCaseAndDashInsensitive (0 ms) 3: [ RUN ] TreeValueTransformTest.SimpleTransformsToObject -3: [ OK ] TreeValueTransformTest.SimpleTransformsToObject (4 ms) +3: [ OK ] TreeValueTransformTest.SimpleTransformsToObject (0 ms) 3: [ RUN ] TreeValueTransformTest.ObjectFromString 3: [ OK ] TreeValueTransformTest.ObjectFromString (0 ms) 3: [ RUN ] TreeValueTransformTest.ObjectFromMultipleStrings -3: [ OK ] TreeValueTransformTest.ObjectFromMultipleStrings (1 ms) +3: [ OK ] TreeValueTransformTest.ObjectFromMultipleStrings (0 ms) 3: [ RUN ] TreeValueTransformTest.ScopedTransformRules 3: [ OK ] TreeValueTransformTest.ScopedTransformRules (0 ms) -3: [----------] 6 tests from TreeValueTransformTest (5 ms total) +3: [----------] 6 tests from TreeValueTransformTest (0 ms total) 3: 3: [----------] 1 test from TreeValueTransformErrorTest 3: [ RUN ] TreeValueTransformErrorTest.ConversionError @@ -114043,7 +114051,7 @@ 3: [ RUN ] LoggerTest.LogsToStream 3: [ OK ] LoggerTest.LogsToStream (0 ms) 3: [ RUN ] LoggerTest.LogsToFile -3: [ OK ] LoggerTest.LogsToFile (0 ms) +3: [ OK ] LoggerTest.LogsToFile (9 ms) 3: [ RUN ] LoggerTest.LevelFilteringWorks 3: [ OK ] LoggerTest.LevelFilteringWorks (0 ms) 3: [ RUN ] LoggerTest.LogsToMultipleStreams @@ -114051,8 +114059,8 @@ 3: [ RUN ] LoggerTest.LogsToMultipleFiles 3: [ OK ] LoggerTest.LogsToMultipleFiles (0 ms) 3: [ RUN ] LoggerTest.LogsToStreamAndFile -3: [ OK ] LoggerTest.LogsToStreamAndFile (1 ms) -3: [----------] 7 tests from LoggerTest (1 ms total) +3: [ OK ] LoggerTest.LogsToStreamAndFile (0 ms) +3: [----------] 7 tests from LoggerTest (9 ms total) 3: 3: [----------] 4 tests from MutexBasicTest 3: [ RUN ] MutexBasicTest.CanBeMade @@ -114067,19 +114075,19 @@ 3: 3: [----------] 3 tests from MutexTaskTest 3: [ RUN ] MutexTaskTest.MutualExclusionWorksWithLock -3: [ OK ] MutexTaskTest.MutualExclusionWorksWithLock (5 ms) +3: [ OK ] MutexTaskTest.MutualExclusionWorksWithLock (16 ms) 3: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread -3: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread (4 ms) +3: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread (16 ms) 3: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread 3: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread (0 ms) -3: [----------] 3 tests from MutexTaskTest (9 ms total) +3: [----------] 3 tests from MutexTaskTest (32 ms total) 3: 3: [----------] 2 tests from PathTest 3: [ RUN ] PathTest.StripSourcePrefixWorks 3: [ OK ] PathTest.StripSourcePrefixWorks (0 ms) 3: [ RUN ] PathTest.SearchOperationsWork -3: [ OK ] PathTest.SearchOperationsWork (1 ms) -3: [----------] 2 tests from PathTest (1 ms total) +3: [ OK ] PathTest.SearchOperationsWork (0 ms) +3: [----------] 2 tests from PathTest (0 ms total) 3: 3: [----------] 2 tests from PhysicalNodeCommunicatorTest 3: [ RUN ] PhysicalNodeCommunicatorTest.CanConstruct @@ -114144,7 +114152,7 @@ 3: [ OK ] ReplaceAllTest.HandlesWordBoundaries (0 ms) 3: [ RUN ] ReplaceAllTest.HandlesPossibleRecursiveMatches 3: [ OK ] ReplaceAllTest.HandlesPossibleRecursiveMatches (0 ms) -3: [----------] 6 tests from ReplaceAllTest (1 ms total) +3: [----------] 6 tests from ReplaceAllTest (0 ms total) 3: 3: [----------] 10 tests from TextLineWrapperTest 3: [ RUN ] TextLineWrapperTest.HandlesEmptyStrings @@ -114179,10 +114187,10 @@ 3: [ RUN ] TextWriterTest.WritesLinesInPartsWithWrapper 3: [ OK ] TextWriterTest.WritesLinesInPartsWithWrapper (0 ms) 3: [ RUN ] TextWriterTest.TracksNewlines -3: [ OK ] TextWriterTest.TracksNewlines (1 ms) +3: [ OK ] TextWriterTest.TracksNewlines (0 ms) 3: [ RUN ] TextWriterTest.PreservesTrailingWhitespace 3: [ OK ] TextWriterTest.PreservesTrailingWhitespace (0 ms) -3: [----------] 6 tests from TextWriterTest (1 ms total) +3: [----------] 6 tests from TextWriterTest (0 ms total) 3: 3: [----------] 1 test from TypeTraitsTest 3: [ RUN ] TypeTraitsTest.IsIntegralConstant @@ -114256,36 +114264,36 @@ 3: [ OK ] BitmaskTest128_9_78/BitmaskTest128.ToHex/0 (0 ms) 3: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.ToHex/1 3: [ OK ] BitmaskTest128_9_78/BitmaskTest128.ToHex/1 (0 ms) -3: [----------] 12 tests from BitmaskTest128_9_78/BitmaskTest128 (0 ms total) +3: [----------] 12 tests from BitmaskTest128_9_78/BitmaskTest128 (1 ms total) 3: 3: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 -3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 (5 ms) +3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 (12 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 -3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 (20 ms) +3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 (14 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 -3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 (20 ms) +3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 (4 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 -3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 (17 ms) +3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 (4 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 -3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 (12 ms) +3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 (4 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 -3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 (15 ms) +3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 (14 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/0 3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/0 (0 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/1 3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/1 (0 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2 3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2 (0 ms) -3: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest (89 ms total) +3: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest (52 ms total) 3: 3: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest 3: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/0 -3: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/0 (1 ms) +3: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/0 (0 ms) 3: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/1 3: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/1 (0 ms) 3: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/2 -3: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/2 (0 ms) +3: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/2 (1 ms) 3: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/3 3: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/3 (0 ms) 3: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/4 @@ -114297,9 +114305,9 @@ 3: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest (1 ms total) 3: 3: [----------] Global test environment tear-down -3: [==========] 347 tests from 56 test cases ran. (119 ms total) +3: [==========] 347 tests from 56 test cases ran. (100 ms total) 3: [ PASSED ] 347 tests. - 3/30 Test #3: UtilityUnitTests ................. Passed 0.18 sec + 3/30 Test #3: UtilityUnitTests ................. Passed 0.16 sec test 4 Start 4: UtilityMpiUnitTests @@ -114311,13 +114319,13 @@ 4: [ RUN ] PhysicalNodeCommunicatorTest.CanConstruct 4: [ OK ] PhysicalNodeCommunicatorTest.CanConstruct (16 ms) 4: [ RUN ] PhysicalNodeCommunicatorTest.CanCallBarrier -4: [ OK ] PhysicalNodeCommunicatorTest.CanCallBarrier (24 ms) -4: [----------] 2 tests from PhysicalNodeCommunicatorTest (56 ms total) +4: [ OK ] PhysicalNodeCommunicatorTest.CanCallBarrier (0 ms) +4: [----------] 2 tests from PhysicalNodeCommunicatorTest (16 ms total) 4: 4: [----------] Global test environment tear-down -4: [==========] 2 tests from 1 test case ran. (56 ms total) +4: [==========] 2 tests from 1 test case ran. (16 ms total) 4: [ PASSED ] 2 tests. - 4/30 Test #4: UtilityMpiUnitTests .............. Passed 0.34 sec + 4/30 Test #4: UtilityMpiUnitTests .............. Passed 0.22 sec test 5 Start 5: MdlibUnitTest @@ -114332,7 +114340,7 @@ 5: 5: [----------] 2 tests from PrEbinTest 5: [ RUN ] PrEbinTest.HandlesAverages -5: [ OK ] PrEbinTest.HandlesAverages (0 ms) +5: [ OK ] PrEbinTest.HandlesAverages (1 ms) 5: [ RUN ] PrEbinTest.HandlesEmptyAverages 5: [ OK ] PrEbinTest.HandlesEmptyAverages (0 ms) 5: [----------] 2 tests from PrEbinTest (1 ms total) @@ -114434,13 +114442,13 @@ 5: [ RUN ] WithParameters/ConstraintsTest.ThreeSequentialConstraints/5 5: [ OK ] WithParameters/ConstraintsTest.ThreeSequentialConstraints/5 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.ThreeSequentialConstraints/6 -5: [ OK ] WithParameters/ConstraintsTest.ThreeSequentialConstraints/6 (0 ms) +5: [ OK ] WithParameters/ConstraintsTest.ThreeSequentialConstraints/6 (1 ms) 5: [ RUN ] WithParameters/ConstraintsTest.ThreeSequentialConstraints/7 5: [ OK ] WithParameters/ConstraintsTest.ThreeSequentialConstraints/7 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.ThreeSequentialConstraints/8 5: [ OK ] WithParameters/ConstraintsTest.ThreeSequentialConstraints/8 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.ThreeSequentialConstraints/9 -5: [ OK ] WithParameters/ConstraintsTest.ThreeSequentialConstraints/9 (1 ms) +5: [ OK ] WithParameters/ConstraintsTest.ThreeSequentialConstraints/9 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.ThreeSequentialConstraints/10 5: [ OK ] WithParameters/ConstraintsTest.ThreeSequentialConstraints/10 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.ThreeSequentialConstraints/11 @@ -114480,7 +114488,7 @@ 5: [ RUN ] WithParameters/ConstraintsTest.FourSequentialConstraints/0 5: [ OK ] WithParameters/ConstraintsTest.FourSequentialConstraints/0 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.FourSequentialConstraints/1 -5: [ OK ] WithParameters/ConstraintsTest.FourSequentialConstraints/1 (0 ms) +5: [ OK ] WithParameters/ConstraintsTest.FourSequentialConstraints/1 (1 ms) 5: [ RUN ] WithParameters/ConstraintsTest.FourSequentialConstraints/2 5: [ OK ] WithParameters/ConstraintsTest.FourSequentialConstraints/2 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.FourSequentialConstraints/3 @@ -114518,7 +114526,7 @@ 5: [ RUN ] WithParameters/ConstraintsTest.FourSequentialConstraints/19 5: [ OK ] WithParameters/ConstraintsTest.FourSequentialConstraints/19 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/0 -5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/0 (1 ms) +5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/0 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/1 5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/1 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/2 @@ -114536,7 +114544,7 @@ 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/8 5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/8 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/9 -5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/9 (0 ms) +5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/9 (1 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/10 5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/10 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/11 @@ -114570,37 +114578,37 @@ 5: [----------] 11 tests from WithParameters/EnergyOutputTest 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/0 5: Opened /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_0.edr as single precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/0 (2 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/0 (6 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/1 5: Opened /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_1.edr as single precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/1 (1 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/1 (2 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/2 5: Opened /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_2.edr as single precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/2 (3 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/2 (1 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/3 5: [ OK ] WithParameters/EnergyOutputTest.CheckOutput/3 (0 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/4 5: Opened /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_4.edr as single precision energy file -5: Reading energy frame 0 time 10.100 Reading energy frame 1 time 27.500 Reading energy frame 2 time 44.900 Reading energy frame 3 time 62.300 Reading energy frame 4 time 79.700 Reading energy frame 5 time 97.100 Reading energy frame 6 time 114.500 Reading energy frame 7 time 131.900 Reading energy frame 8 time 149.300 Reading energy frame 9 time 166.700 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/4 (13 ms) +5: Reading energy frame 0 time 10.100 Reading energy frame 1 time 27.500 Reading energy frame 2 time 44.900 Reading energy frame 3 time 62.300 Reading energy frame 4 time 79.700 Reading energy frame 5 time 97.100 Reading energy frame 6 time 114.500 Reading energy frame 7 time 131.900 Reading energy frame 8 time 149.300 Reading energy frame 9 time 166.700 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/4 (18 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/5 5: Opened /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_5.edr as single precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/5 (2 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/5 (6 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/6 5: Opened /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_6.edr as single precision energy file 5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/6 (2 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/7 5: Opened /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_7.edr as single precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/7 (2 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/7 (4 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/8 5: Opened /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_8.edr as single precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/8 (6 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/8 (2 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/9 5: Opened /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_9.edr as single precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/9 (2 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/9 (1 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/10 5: Opened /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_10.edr as single precision energy file 5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/10 (2 ms) -5: [----------] 11 tests from WithParameters/EnergyOutputTest (48 ms total) +5: [----------] 11 tests from WithParameters/EnergyOutputTest (60 ms total) 5: 5: [----------] 24 tests from SimpleTests/CalculateAcceptanceWeightSimple 5: [ RUN ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/0 @@ -114616,7 +114624,7 @@ 5: [ RUN ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/5 5: [ OK ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/5 (0 ms) 5: [ RUN ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/6 -5: [ OK ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/6 (1 ms) +5: [ OK ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/6 (0 ms) 5: [ RUN ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/7 5: [ OK ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/7 (0 ms) 5: [ RUN ] SimpleTests/CalculateAcceptanceWeightSimple.KnownCalculationModeDoesNotThrow/0 @@ -114692,32 +114700,32 @@ 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/2 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/2 (0 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/3 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/3 (0 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/3 (1 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/4 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/4 (1 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/4 (0 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/5 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/5 (10 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/5 (1 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/6 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/6 (5 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/6 (18 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/7 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/7 (0 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/8 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/8 (1 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/8 (0 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/9 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/9 (0 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/10 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/10 (5 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/10 (2 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/11 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/11 (1 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/11 (6 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/12 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/12 (6 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/12 (1 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/13 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/13 (2 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/13 (1 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/14 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/14 (2 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/15 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/15 (9 ms) -5: [----------] 16 tests from WithParameters/LeapFrogTest (45 ms total) +5: [----------] 16 tests from WithParameters/LeapFrogTest (47 ms total) 5: 5: [----------] 13 tests from WithParameters/SettleTest 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/0 @@ -114733,7 +114741,7 @@ 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/5 5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/5 (0 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/6 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/6 (1 ms) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/6 (0 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/7 5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/7 (0 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/8 @@ -114741,17 +114749,17 @@ 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/9 5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/9 (0 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/10 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/10 (1 ms) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/10 (0 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/11 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/11 (1 ms) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/11 (10 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/12 5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/12 (1 ms) -5: [----------] 13 tests from WithParameters/SettleTest (7 ms total) +5: [----------] 13 tests from WithParameters/SettleTest (16 ms total) 5: 5: [----------] Global test environment tear-down -5: [==========] 187 tests from 13 test cases ran. (110 ms total) +5: [==========] 187 tests from 13 test cases ran. (133 ms total) 5: [ PASSED ] 187 tests. - 5/30 Test #5: MdlibUnitTest .................... Passed 0.18 sec + 5/30 Test #5: MdlibUnitTest .................... Passed 0.22 sec test 6 Start 6: AppliedForcesUnitTest @@ -114761,16 +114769,16 @@ 6: [----------] Global test environment set-up. 6: [----------] 2 tests from DensityFittingTest 6: [ RUN ] DensityFittingTest.ForceProviderLackingInputThrows -6: [ OK ] DensityFittingTest.ForceProviderLackingInputThrows (1 ms) +6: [ OK ] DensityFittingTest.ForceProviderLackingInputThrows (0 ms) 6: [ RUN ] DensityFittingTest.SingleAtom 6: [ OK ] DensityFittingTest.SingleAtom (0 ms) -6: [----------] 2 tests from DensityFittingTest (1 ms total) +6: [----------] 2 tests from DensityFittingTest (0 ms total) 6: 6: [----------] 8 tests from DensityFittingOptionsTest 6: [ RUN ] DensityFittingOptionsTest.DefaultParameters 6: [ OK ] DensityFittingOptionsTest.DefaultParameters (0 ms) 6: [ RUN ] DensityFittingOptionsTest.OptionSetsActive -6: [ OK ] DensityFittingOptionsTest.OptionSetsActive (0 ms) +6: [ OK ] DensityFittingOptionsTest.OptionSetsActive (1 ms) 6: [ RUN ] DensityFittingOptionsTest.OutputNoDefaultValuesWhenInactive 6: [ OK ] DensityFittingOptionsTest.OutputNoDefaultValuesWhenInactive (0 ms) 6: [ RUN ] DensityFittingOptionsTest.OutputDefaultValuesWhenActive @@ -114780,7 +114788,7 @@ 6: [ RUN ] DensityFittingOptionsTest.InternalsToKvt 6: [ OK ] DensityFittingOptionsTest.InternalsToKvt (0 ms) 6: [ RUN ] DensityFittingOptionsTest.KvtToInternal -6: [ OK ] DensityFittingOptionsTest.KvtToInternal (1 ms) +6: [ OK ] DensityFittingOptionsTest.KvtToInternal (0 ms) 6: [ RUN ] DensityFittingOptionsTest.RoundTripForInternalsIsIdempotent 6: [ OK ] DensityFittingOptionsTest.RoundTripForInternalsIsIdempotent (0 ms) 6: [----------] 8 tests from DensityFittingOptionsTest (1 ms total) @@ -114808,13 +114816,13 @@ 6: [ RUN ] ElectricFieldTest.Oscillating 6: [ OK ] ElectricFieldTest.Oscillating (0 ms) 6: [ RUN ] ElectricFieldTest.Pulsed -6: [ OK ] ElectricFieldTest.Pulsed (0 ms) -6: [----------] 3 tests from ElectricFieldTest (0 ms total) +6: [ OK ] ElectricFieldTest.Pulsed (9 ms) +6: [----------] 3 tests from ElectricFieldTest (9 ms total) 6: 6: [----------] Global test environment tear-down -6: [==========] 20 tests from 4 test cases ran. (2 ms total) +6: [==========] 20 tests from 4 test cases ran. (10 ms total) 6: [ PASSED ] 20 tests. - 6/30 Test #6: AppliedForcesUnitTest ............ Passed 0.05 sec + 6/30 Test #6: AppliedForcesUnitTest ............ Passed 0.06 sec test 7 Start 7: CommandLineUnitTests @@ -114824,12 +114832,12 @@ 7: [----------] Global test environment set-up. 7: [----------] 3 tests from CommandLineHelpModuleTest 7: [ RUN ] CommandLineHelpModuleTest.PrintsGeneralHelp -7: [ OK ] CommandLineHelpModuleTest.PrintsGeneralHelp (1 ms) +7: [ OK ] CommandLineHelpModuleTest.PrintsGeneralHelp (0 ms) 7: [ RUN ] CommandLineHelpModuleTest.PrintsHelpOnTopic 7: [ OK ] CommandLineHelpModuleTest.PrintsHelpOnTopic (0 ms) 7: [ RUN ] CommandLineHelpModuleTest.ExportsHelp 7: [ OK ] CommandLineHelpModuleTest.ExportsHelp (1 ms) -7: [----------] 3 tests from CommandLineHelpModuleTest (6 ms total) +7: [----------] 3 tests from CommandLineHelpModuleTest (1 ms total) 7: 7: [----------] 7 tests from CommandLineHelpWriterTest 7: [ RUN ] CommandLineHelpWriterTest.HandlesOptionTypes @@ -114839,7 +114847,7 @@ 7: [ RUN ] CommandLineHelpWriterTest.HandlesLongFileOptions 7: [ OK ] CommandLineHelpWriterTest.HandlesLongFileOptions (0 ms) 7: [ RUN ] CommandLineHelpWriterTest.HandlesLongOptions -7: [ OK ] CommandLineHelpWriterTest.HandlesLongOptions (1 ms) +7: [ OK ] CommandLineHelpWriterTest.HandlesLongOptions (0 ms) 7: [ RUN ] CommandLineHelpWriterTest.HandlesOptionGroups 7: [ OK ] CommandLineHelpWriterTest.HandlesOptionGroups (0 ms) 7: [ RUN ] CommandLineHelpWriterTest.HandlesHelpText @@ -114852,7 +114860,7 @@ 7: [ RUN ] CommandLineModuleManagerTest.RunsModule 7: [ OK ] CommandLineModuleManagerTest.RunsModule (0 ms) 7: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelp -7: [ OK ] CommandLineModuleManagerTest.RunsModuleHelp (0 ms) +7: [ OK ] CommandLineModuleManagerTest.RunsModuleHelp (5 ms) 7: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet 7: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet (0 ms) 7: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH @@ -114861,7 +114869,7 @@ 7: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule (0 ms) 7: [ RUN ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames 7: [ OK ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames (0 ms) -7: [----------] 6 tests from CommandLineModuleManagerTest (0 ms total) +7: [----------] 6 tests from CommandLineModuleManagerTest (5 ms total) 7: 7: [----------] 13 tests from CommandLineParserTest 7: [ RUN ] CommandLineParserTest.HandlesSingleValues @@ -114930,7 +114938,7 @@ 7: [ RUN ] ParseCommonArgsTest.ParsesVectorArgs 7: [ OK ] ParseCommonArgsTest.ParsesVectorArgs (0 ms) 7: [ RUN ] ParseCommonArgsTest.ParsesTimeArgs -7: [ OK ] ParseCommonArgsTest.ParsesTimeArgs (0 ms) +7: [ OK ] ParseCommonArgsTest.ParsesTimeArgs (1 ms) 7: [ RUN ] ParseCommonArgsTest.ParsesTimeArgsWithTimeUnit 7: [ OK ] ParseCommonArgsTest.ParsesTimeArgsWithTimeUnit (0 ms) 7: [ RUN ] ParseCommonArgsTest.ParsesEnumArgs @@ -114942,7 +114950,7 @@ 7: [ RUN ] ParseCommonArgsTest.ParsesFileArgsWithDefaultFileName 7: [ OK ] ParseCommonArgsTest.ParsesFileArgsWithDefaultFileName (0 ms) 7: [ RUN ] ParseCommonArgsTest.ParseFileArgsWithCustomDefaultExtension -7: [ OK ] ParseCommonArgsTest.ParseFileArgsWithCustomDefaultExtension (1 ms) +7: [ OK ] ParseCommonArgsTest.ParseFileArgsWithCustomDefaultExtension (0 ms) 7: [ RUN ] ParseCommonArgsTest.HandlesNonExistentInputFiles 7: [ OK ] ParseCommonArgsTest.HandlesNonExistentInputFiles (0 ms) 7: [ RUN ] ParseCommonArgsTest.HandlesNonExistentOptionalInputFiles @@ -114954,9 +114962,9 @@ 7: [ RUN ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension 7: [ OK ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension (0 ms) 7: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFile -7: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFile (0 ms) +7: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFile (1 ms) 7: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName -7: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName (1 ms) +7: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName (0 ms) 7: [ RUN ] ParseCommonArgsTest.CanKeepUnknownArgs 7: [ OK ] ParseCommonArgsTest.CanKeepUnknownArgs (0 ms) 7: [----------] 21 tests from ParseCommonArgsTest (2 ms total) @@ -114999,7 +115007,7 @@ 8: [----------] Global test environment tear-down 8: [==========] 9 tests from 2 test cases ran. (0 ms total) 8: [ PASSED ] 9 tests. - 8/30 Test #8: DomDecTests ...................... Passed 0.05 sec + 8/30 Test #8: DomDecTests ...................... Passed 0.07 sec test 9 Start 9: EwaldUnitTests @@ -115015,10 +115023,10 @@ 9: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 (0 ms) 9: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 -9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 (11 ms) +9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 (4 ms) 9: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 (0 ms) -9: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest (12 ms total) +9: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest (4 ms total) 9: 9: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 @@ -115028,54 +115036,54 @@ 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 (8 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 (14 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 (10 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 (11 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 (14 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 (6 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 (1 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 (15 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 (14 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 (1 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 (14 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 (1 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 (10 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 (9 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 (1 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 (8 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 (3 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 (10 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 (9 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 (2 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 (11 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 (2 ms) -9: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest (128 ms total) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 (6 ms) +9: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest (124 ms total) 9: 9: [----------] 144 tests from SaneInput/PmeGatherTest 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/0 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/0 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/0 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/1 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/1 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/1 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/2 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/2 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/3 @@ -115095,39 +115103,39 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/10 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/10 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/11 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/11 (13 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/11 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/12 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/12 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/12 (5 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/13 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/13 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/13 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/14 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/14 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/14 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/15 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/15 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/16 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/16 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/17 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/17 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/17 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/18 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/18 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/19 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/19 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/19 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/20 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/20 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/20 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/21 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/21 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/22 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/22 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/23 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/23 (9 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/23 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/24 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/24 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/25 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/25 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/26 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/26 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/26 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/27 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/27 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/27 (9 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/28 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/28 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/29 @@ -115145,35 +115153,35 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/35 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/35 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/36 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/36 (9 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/36 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/37 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/37 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/38 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/38 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/38 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/39 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/39 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/39 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/40 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/40 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/41 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/41 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/42 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/42 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/42 (5 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/43 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/43 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/43 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/44 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/44 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/45 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/45 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/45 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/46 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/46 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/47 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/47 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/47 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/48 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/48 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/49 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/49 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/49 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/50 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/50 (9 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/50 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/51 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/51 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/52 @@ -115185,9 +115193,9 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/55 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/55 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/56 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/56 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/56 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/57 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/57 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/57 (5 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/58 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/58 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/59 @@ -115207,17 +115215,17 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/66 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/66 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/67 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/67 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/67 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/68 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/68 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/68 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/69 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/69 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/70 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/70 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/71 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/71 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/71 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/72 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/72 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/72 (4 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/73 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/73 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/74 @@ -115225,15 +115233,15 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/75 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/75 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/76 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/76 (12 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/76 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/77 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/77 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/77 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/78 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/78 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/78 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/79 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/79 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/80 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/80 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/80 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/81 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/81 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/82 @@ -115241,87 +115249,87 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/83 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/83 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/84 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/84 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/84 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/85 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/85 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/86 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/86 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/86 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/87 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/87 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/88 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/88 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/88 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/89 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/89 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/89 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/90 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/90 (8 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/90 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/91 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/91 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/91 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/92 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/92 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/93 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/93 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/93 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/94 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/94 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/94 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/95 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/95 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/96 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/96 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/97 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/97 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/97 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/98 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/98 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/98 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/99 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/99 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/100 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/100 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/101 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/101 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/101 (5 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/102 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/102 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/103 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/103 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/104 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/104 (9 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/104 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/105 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/105 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/106 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/106 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/107 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/107 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/107 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/108 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/108 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/108 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/109 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/109 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/110 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/110 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/111 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/111 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/111 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/112 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/112 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/112 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/113 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/113 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/114 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/114 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/115 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/115 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/115 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/116 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/116 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/116 (13 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/117 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/117 (8 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/117 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/118 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/118 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/119 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/119 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/119 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/120 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/120 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/120 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/121 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/121 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/122 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/122 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/123 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/123 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/123 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/124 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/124 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/124 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/125 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/125 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/126 @@ -115333,9 +115341,9 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/129 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/129 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/130 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/130 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/130 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/131 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/131 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/131 (9 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/132 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/132 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/133 @@ -115353,87 +115361,87 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/139 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/139 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/140 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/140 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/140 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/141 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/141 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/142 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/142 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/142 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/143 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/143 (13 ms) -9: [----------] 144 tests from SaneInput/PmeGatherTest (128 ms total) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/143 (0 ms) +9: [----------] 144 tests from SaneInput/PmeGatherTest (95 ms total) 9: 9: [----------] 16 tests from SaneInput/PmeSolveTest 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/0 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/0 (1 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/0 (9 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/1 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/1 (2 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/2 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/2 (9 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/2 (0 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/3 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/3 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/4 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/4 (2 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/5 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/5 (9 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/5 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/6 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/6 (1 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/6 (0 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/7 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/7 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/8 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/8 (1 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/8 (9 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/9 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/9 (2 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/9 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/10 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/10 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/11 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/11 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/12 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/12 (13 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/12 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/13 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/13 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/14 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/14 (1 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/14 (0 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/15 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/15 (1 ms) -9: [----------] 16 tests from SaneInput/PmeSolveTest (47 ms total) +9: [----------] 16 tests from SaneInput/PmeSolveTest (31 ms total) 9: 9: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 -9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 (9 ms) +9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 (1 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 -9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 (1 ms) +9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 (0 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 -9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 (1 ms) +9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 (9 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 -9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 (0 ms) +9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 (1 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 -9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 (9 ms) +9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 (0 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 (1 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 -9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 (1 ms) +9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 (0 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 (1 ms) -9: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest (23 ms total) +9: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest (13 ms total) 9: 9: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 -9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 (1 ms) +9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 (5 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 -9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 (9 ms) +9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 (2 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 -9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 (1 ms) +9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 (0 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 -9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 (0 ms) +9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 (1 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 -9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 (10 ms) +9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 (1 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 -9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 (1 ms) +9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 (2 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 (1 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 -9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 (1 ms) -9: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest (25 ms total) +9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 (9 ms) +9: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest (21 ms total) 9: 9: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 @@ -115441,120 +115449,120 @@ 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 (1 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 (0 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 (14 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 (2 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 (1 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 (0 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 (0 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 (10 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 (0 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 (1 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 (9 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 (9 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 (2 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 (1 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 (0 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 (1 ms) -9: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest (46 ms total) +9: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest (21 ms total) 9: 9: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 (15 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 (11 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 (10 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 (2 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 (10 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 (1 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 (0 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 (9 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 (10 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 (2 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 (1 ms) -9: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest (54 ms total) +9: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest (30 ms total) 9: 9: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 (1 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 (2 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 (1 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 (1 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 (13 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 (1 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 (2 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 (10 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 (10 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 (2 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 (2 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 (0 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 (1 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 (5 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 (2 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 (2 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 (1 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 (3 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 (10 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 (2 ms) -9: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest (52 ms total) +9: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest (32 ms total) 9: 9: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 (3 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 (2 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 (3 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 (2 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 (12 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 (11 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 (4 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 (14 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 (13 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 (14 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 (4 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 (2 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 (3 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 (6 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 (12 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 (2 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 (4 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 (3 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 (13 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 (4 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 (13 ms) -9: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest (100 ms total) +9: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest (86 ms total) 9: 9: [----------] Global test environment tear-down -9: [==========] 257 tests from 10 test cases ran. (790 ms total) +9: [==========] 257 tests from 10 test cases ran. (595 ms total) 9: [ PASSED ] 257 tests. - 9/30 Test #9: EwaldUnitTests ................... Passed 0.89 sec + 9/30 Test #9: EwaldUnitTests ................... Passed 0.70 sec test 10 Start 10: FFTUnitTests @@ -115564,20 +115572,20 @@ 10: [----------] Global test environment set-up. 10: [----------] 2 tests from ManyFFTTest 10: [ RUN ] ManyFFTTest.Complex1DLength48Multi5Test -10: [ OK ] ManyFFTTest.Complex1DLength48Multi5Test (17 ms) +10: [ OK ] ManyFFTTest.Complex1DLength48Multi5Test (19 ms) 10: [ RUN ] ManyFFTTest.Real1DLength48Multi5Test 10: [ OK ] ManyFFTTest.Real1DLength48Multi5Test (57 ms) -10: [----------] 2 tests from ManyFFTTest (75 ms total) +10: [----------] 2 tests from ManyFFTTest (77 ms total) 10: 10: [----------] 1 test from FFTTest 10: [ RUN ] FFTTest.Real2DLength18_15Test -10: [ OK ] FFTTest.Real2DLength18_15Test (16 ms) +10: [ OK ] FFTTest.Real2DLength18_15Test (15 ms) 10: [----------] 1 test from FFTTest (16 ms total) 10: 10: [----------] 1 test from FFFTest3D 10: [ RUN ] FFFTest3D.Real5_6_9 -10: [ OK ] FFFTest3D.Real5_6_9 (7 ms) -10: [----------] 1 test from FFFTest3D (7 ms total) +10: [ OK ] FFFTest3D.Real5_6_9 (10 ms) +10: [----------] 1 test from FFFTest3D (10 ms total) 10: 10: [----------] 10 tests from 7_8_25_36_60/FFTTest1D 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/0 @@ -115587,23 +115595,23 @@ 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/2 10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/2 (6 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/3 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/3 (9 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/3 (8 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/4 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/4 (10 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/4 (1 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/0 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/0 (1 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/0 (5 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/1 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/1 (1 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/1 (4 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/2 10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/2 (0 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/3 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/3 (35 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/3 (26 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/4 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/4 (48 ms) -10: [----------] 10 tests from 7_8_25_36_60/FFTTest1D (112 ms total) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/4 (49 ms) +10: [----------] 10 tests from 7_8_25_36_60/FFTTest1D (102 ms total) 10: 10: [----------] Global test environment tear-down -10: [==========] 14 tests from 4 test cases ran. (215 ms total) +10: [==========] 14 tests from 4 test cases ran. (205 ms total) 10: [ PASSED ] 14 tests. 10/30 Test #10: FFTUnitTests ..................... Passed 0.26 sec test 11 @@ -115699,7 +115707,7 @@ 11: [ OK ] HostAllocatorTestNoMem/1.Swap (0 ms) 11: [ RUN ] HostAllocatorTestNoMem/1.Comparison 11: [ OK ] HostAllocatorTestNoMem/1.Comparison (0 ms) -11: [----------] 5 tests from HostAllocatorTestNoMem/1 (7 ms total) +11: [----------] 5 tests from HostAllocatorTestNoMem/1 (0 ms total) 11: 11: [----------] 5 tests from HostAllocatorTestNoMem/2, where TypeParam = gmx::BasicVector 11: [ RUN ] HostAllocatorTestNoMem/2.CreateVector @@ -115738,8 +115746,8 @@ 11: [ RUN ] HostAllocatorTestNoMemCopyable/1.CopyAssignment 11: [ OK ] HostAllocatorTestNoMemCopyable/1.CopyAssignment (0 ms) 11: [ RUN ] HostAllocatorTestNoMemCopyable/1.CopyConstruction -11: [ OK ] HostAllocatorTestNoMemCopyable/1.CopyConstruction (0 ms) -11: [----------] 2 tests from HostAllocatorTestNoMemCopyable/1 (0 ms total) +11: [ OK ] HostAllocatorTestNoMemCopyable/1.CopyConstruction (1 ms) +11: [----------] 2 tests from HostAllocatorTestNoMemCopyable/1 (1 ms total) 11: 11: [----------] 2 tests from HostAllocatorTestNoMemCopyable/2, where TypeParam = gmx::BasicVector 11: [ RUN ] HostAllocatorTestNoMemCopyable/2.CopyAssignment @@ -115798,9 +115806,9 @@ 11: [----------] 4 tests from AllocatorTest/3 (0 ms total) 11: 11: [----------] Global test environment tear-down -11: [==========] 62 tests from 20 test cases ran. (7 ms total) +11: [==========] 62 tests from 20 test cases ran. (1 ms total) 11: [ PASSED ] 62 tests. -11/30 Test #11: GpuUtilsUnitTests ................ Passed 0.06 sec +11/30 Test #11: GpuUtilsUnitTests ................ Passed 0.08 sec test 12 Start 12: HardwareUnitTests @@ -115810,19 +115818,19 @@ 12: [----------] Global test environment set-up. 12: [----------] 4 tests from HardwareTopologyTest 12: [ RUN ] HardwareTopologyTest.Execute -12: [ OK ] HardwareTopologyTest.Execute (97 ms) +12: [ OK ] HardwareTopologyTest.Execute (86 ms) 12: [ RUN ] HardwareTopologyTest.HwlocExecute -12: [ OK ] HardwareTopologyTest.HwlocExecute (101 ms) +12: [ OK ] HardwareTopologyTest.HwlocExecute (83 ms) 12: [ RUN ] HardwareTopologyTest.ProcessorSelfconsistency -12: [ OK ] HardwareTopologyTest.ProcessorSelfconsistency (93 ms) +12: [ OK ] HardwareTopologyTest.ProcessorSelfconsistency (97 ms) 12: [ RUN ] HardwareTopologyTest.NumaCacheSelfconsistency -12: [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (115 ms) -12: [----------] 4 tests from HardwareTopologyTest (406 ms total) +12: [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (83 ms) +12: [----------] 4 tests from HardwareTopologyTest (349 ms total) 12: 12: [----------] Global test environment tear-down -12: [==========] 4 tests from 1 test case ran. (407 ms total) +12: [==========] 4 tests from 1 test case ran. (349 ms total) 12: [ PASSED ] 4 tests. -12/30 Test #12: HardwareUnitTests ................ Passed 0.45 sec +12/30 Test #12: HardwareUnitTests ................ Passed 0.40 sec test 13 Start 13: MathUnitTests @@ -115863,7 +115871,7 @@ 13: 13: [----------] 8 tests from TranslateAndScaleTest 13: [ RUN ] TranslateAndScaleTest.identityTransformation -13: [ OK ] TranslateAndScaleTest.identityTransformation (0 ms) +13: [ OK ] TranslateAndScaleTest.identityTransformation (1 ms) 13: [ RUN ] TranslateAndScaleTest.translationWithIdentityScaling 13: [ OK ] TranslateAndScaleTest.translationWithIdentityScaling (0 ms) 13: [ RUN ] TranslateAndScaleTest.scalingWithZeroTranslation @@ -115871,7 +115879,7 @@ 13: [ RUN ] TranslateAndScaleTest.translationAndScalingNonTrivial 13: [ OK ] TranslateAndScaleTest.translationAndScalingNonTrivial (0 ms) 13: [ RUN ] TranslateAndScaleTest.scalingIdentity -13: [ OK ] TranslateAndScaleTest.scalingIdentity (1 ms) +13: [ OK ] TranslateAndScaleTest.scalingIdentity (0 ms) 13: [ RUN ] TranslateAndScaleTest.scalingNonTrivial 13: [ OK ] TranslateAndScaleTest.scalingNonTrivial (0 ms) 13: [ RUN ] TranslateAndScaleTest.scalingInverseNoZero @@ -115898,14 +115906,14 @@ 13: [ RUN ] DensitySimilarityTest.RelativeEntropyGradientIsCorrect 13: [ OK ] DensitySimilarityTest.RelativeEntropyGradientIsCorrect (0 ms) 13: [ RUN ] DensitySimilarityTest.CrossCorrelationIsOne -13: [ OK ] DensitySimilarityTest.CrossCorrelationIsOne (62 ms) +13: [ OK ] DensitySimilarityTest.CrossCorrelationIsOne (76 ms) 13: [ RUN ] DensitySimilarityTest.CrossCorrelationIsMinusOneWhenAntiCorrelated -13: [ OK ] DensitySimilarityTest.CrossCorrelationIsMinusOneWhenAntiCorrelated (63 ms) +13: [ OK ] DensitySimilarityTest.CrossCorrelationIsMinusOneWhenAntiCorrelated (70 ms) 13: [ RUN ] DensitySimilarityTest.CrossCorrelationGradientIsZeroWhenCorrelated -13: [ OK ] DensitySimilarityTest.CrossCorrelationGradientIsZeroWhenCorrelated (56 ms) +13: [ OK ] DensitySimilarityTest.CrossCorrelationGradientIsZeroWhenCorrelated (34 ms) 13: [ RUN ] DensitySimilarityTest.CrossCorrelationGradientIsCorrect 13: [ OK ] DensitySimilarityTest.CrossCorrelationGradientIsCorrect (0 ms) -13: [----------] 12 tests from DensitySimilarityTest (181 ms total) +13: [----------] 12 tests from DensitySimilarityTest (180 ms total) 13: 13: [----------] 6 tests from StructureSimilarityTest 13: [ RUN ] StructureSimilarityTest.StructureComparedToSelfHasZeroRMSD @@ -115943,7 +115951,7 @@ 13: 13: [----------] 21 tests from FunctionTest 13: [ RUN ] FunctionTest.StaticLog2 -13: [ OK ] FunctionTest.StaticLog2 (8 ms) +13: [ OK ] FunctionTest.StaticLog2 (0 ms) 13: [ RUN ] FunctionTest.Log2I32Bit 13: [ OK ] FunctionTest.Log2I32Bit (0 ms) 13: [ RUN ] FunctionTest.Log2I64Bit @@ -115955,9 +115963,9 @@ 13: [ RUN ] FunctionTest.InvsqrtDouble 13: [ OK ] FunctionTest.InvsqrtDouble (0 ms) 13: [ RUN ] FunctionTest.InvsqrtInteger -13: [ OK ] FunctionTest.InvsqrtInteger (0 ms) +13: [ OK ] FunctionTest.InvsqrtInteger (1 ms) 13: [ RUN ] FunctionTest.InvcbrtFloat -13: [ OK ] FunctionTest.InvcbrtFloat (0 ms) +13: [ OK ] FunctionTest.InvcbrtFloat (8 ms) 13: [ RUN ] FunctionTest.InvcbrtDouble 13: [ OK ] FunctionTest.InvcbrtDouble (0 ms) 13: [ RUN ] FunctionTest.InvcbrtInteger @@ -115969,7 +115977,7 @@ 13: [ RUN ] FunctionTest.SixthrootInteger 13: [ OK ] FunctionTest.SixthrootInteger (0 ms) 13: [ RUN ] FunctionTest.InvsixthrootFloat -13: [ OK ] FunctionTest.InvsixthrootFloat (1 ms) +13: [ OK ] FunctionTest.InvsixthrootFloat (0 ms) 13: [ RUN ] FunctionTest.InvsixthrootDouble 13: [ OK ] FunctionTest.InvsixthrootDouble (0 ms) 13: [ RUN ] FunctionTest.InvsixthrootInteger @@ -115981,7 +115989,7 @@ 13: [ RUN ] FunctionTest.ErfInvDouble 13: [ OK ] FunctionTest.ErfInvDouble (0 ms) 13: [ RUN ] FunctionTest.ErfAndErfInvAreInversesFloat -13: [ OK ] FunctionTest.ErfAndErfInvAreInversesFloat (0 ms) +13: [ OK ] FunctionTest.ErfAndErfInvAreInversesFloat (1 ms) 13: [ RUN ] FunctionTest.ErfAndErfInvAreInversesDouble 13: [ OK ] FunctionTest.ErfAndErfInvAreInversesDouble (0 ms) 13: [----------] 21 tests from FunctionTest (10 ms total) @@ -116016,7 +116024,7 @@ 13: [ OK ] GaussTransformTest.centerGaussianInCubeHasExpectedValues (0 ms) 13: [ RUN ] GaussTransformTest.view 13: [ OK ] GaussTransformTest.view (0 ms) -13: [----------] 9 tests from GaussTransformTest (1 ms total) +13: [----------] 9 tests from GaussTransformTest (0 ms total) 13: 13: [----------] 3 tests from DensityFittingForce 13: [ RUN ] DensityFittingForce.isZeroWhenMatchingDensity @@ -116125,7 +116133,7 @@ 13: [ OK ] MultiDimArrayTest.constViewConstBegin (0 ms) 13: [ RUN ] MultiDimArrayTest.constViewConstEnd 13: [ OK ] MultiDimArrayTest.constViewConstEnd (0 ms) -13: [----------] 25 tests from MultiDimArrayTest (0 ms total) +13: [----------] 25 tests from MultiDimArrayTest (1 ms total) 13: 13: [----------] 4 tests from MultiDimArrayToMdSpanTest 13: [ RUN ] MultiDimArrayToMdSpanTest.convertsToMdSpan @@ -116166,10 +116174,10 @@ 13: [ RUN ] PaddedVectorTest/2.CanCopyAssign 13: [ OK ] PaddedVectorTest/2.CanCopyAssign (0 ms) 13: [ RUN ] PaddedVectorTest/2.CanMoveAssign -13: [ OK ] PaddedVectorTest/2.CanMoveAssign (1 ms) +13: [ OK ] PaddedVectorTest/2.CanMoveAssign (0 ms) 13: [ RUN ] PaddedVectorTest/2.CanSwap 13: [ OK ] PaddedVectorTest/2.CanSwap (0 ms) -13: [----------] 4 tests from PaddedVectorTest/2 (1 ms total) +13: [----------] 4 tests from PaddedVectorTest/2 (0 ms total) 13: 13: [----------] 4 tests from PaddedVectorTest/3, where TypeParam = std::allocator > 13: [ RUN ] PaddedVectorTest/3.ConstructsResizesAndReserves @@ -116323,12 +116331,12 @@ 13: [ OK ] RVecTest.MoveConstructorWorks (0 ms) 13: [ RUN ] RVecTest.MoveAssignmentWorks 13: [ OK ] RVecTest.MoveAssignmentWorks (0 ms) -13: [----------] 37 tests from RVecTest (2 ms total) +13: [----------] 37 tests from RVecTest (1 ms total) 13: 13: [----------] Global test environment tear-down -13: [==========] 204 tests from 29 test cases ran. (196 ms total) +13: [==========] 204 tests from 29 test cases ran. (193 ms total) 13: [ PASSED ] 204 tests. -13/30 Test #13: MathUnitTests .................... Passed 0.26 sec +13/30 Test #13: MathUnitTests .................... Passed 0.29 sec test 14 Start 14: MdrunUtilityUnitTests @@ -116342,7 +116350,7 @@ 14: [ RUN ] ThreadAffinityTest.DoesNothingWhenNotSupported 14: [ OK ] ThreadAffinityTest.DoesNothingWhenNotSupported (0 ms) 14: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads -14: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads (1 ms) +14: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads (0 ms) 14: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads 14: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads (0 ms) 14: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads @@ -116356,29 +116364,29 @@ 14: [ RUN ] ThreadAffinityTest.DoesNothingWithTooLargeStride 14: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeStride (0 ms) 14: [ RUN ] ThreadAffinityTest.PinsSingleThreadWithAuto -14: [ OK ] ThreadAffinityTest.PinsSingleThreadWithAuto (1 ms) +14: [ OK ] ThreadAffinityTest.PinsSingleThreadWithAuto (0 ms) 14: [ RUN ] ThreadAffinityTest.PinsSingleThreadWhenForced 14: [ OK ] ThreadAffinityTest.PinsSingleThreadWhenForced (0 ms) 14: [ RUN ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced 14: [ OK ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced (0 ms) 14: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread 14: NOTE: Affinity setting failed. -14: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread (0 ms) +14: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread (1 ms) 14: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithAuto -14: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithAuto (14 ms) +14: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithAuto (13 ms) 14: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced -14: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced (1 ms) +14: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced (0 ms) 14: [ RUN ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads 14: [ OK ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads (0 ms) 14: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing 14: NOTE: Affinity setting for 1/2 threads failed. -14: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing (0 ms) -14: [----------] 17 tests from ThreadAffinityTest (17 ms total) +14: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing (4 ms) +14: [----------] 17 tests from ThreadAffinityTest (19 ms total) 14: 14: [----------] Global test environment tear-down -14: [==========] 17 tests from 1 test case ran. (25 ms total) +14: [==========] 17 tests from 1 test case ran. (19 ms total) 14: [ PASSED ] 17 tests. -14/30 Test #14: MdrunUtilityUnitTests ............ Passed 0.08 sec +14/30 Test #14: MdrunUtilityUnitTests ............ Passed 0.09 sec test 15 Start 15: MdrunUtilityMpiUnitTests @@ -116388,40 +116396,40 @@ 15: [----------] Global test environment set-up. 15: [----------] 6 tests from ThreadAffinityMultiRankTest 15: [ RUN ] ThreadAffinityMultiRankTest.PinsWholeNode -15: [ OK ] ThreadAffinityMultiRankTest.PinsWholeNode (80 ms) +15: [ OK ] ThreadAffinityMultiRankTest.PinsWholeNode (1 ms) 15: [ RUN ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride -15: [ OK ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride (37 ms) +15: [ OK ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride (0 ms) 15: [ RUN ] ThreadAffinityMultiRankTest.PinsTwoNodes -15: [ OK ] ThreadAffinityMultiRankTest.PinsTwoNodes (41 ms) +15: [ OK ] ThreadAffinityMultiRankTest.PinsTwoNodes (1 ms) 15: [ RUN ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled -15: [ OK ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled (56 ms) +15: [ OK ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled (0 ms) 15: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto -15: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto (44 ms) +15: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto (0 ms) 15: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce -15: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce (40 ms) -15: [----------] 6 tests from ThreadAffinityMultiRankTest (371 ms total) +15: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce (0 ms) +15: [----------] 6 tests from ThreadAffinityMultiRankTest (2 ms total) 15: 15: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly (41 ms) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly (0 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly (56 ms) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly (0 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster 15: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster (41 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly (41 ms) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly (32 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly (56 ms) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly (0 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly (33 ms) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly (1 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly (57 ms) -15: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest (424 ms total) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly (0 ms) +15: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest (90 ms total) 15: 15: [----------] Global test environment tear-down -15: [==========] 13 tests from 2 test cases ran. (796 ms total) +15: [==========] 13 tests from 2 test cases ran. (92 ms total) 15: [ PASSED ] 13 tests. -15/30 Test #15: MdrunUtilityMpiUnitTests ......... Passed 1.12 sec +15/30 Test #15: MdrunUtilityMpiUnitTests ......... Passed 0.32 sec test 16 Start 16: MDSpanTests @@ -116433,12 +116441,12 @@ 16: [ RUN ] BasicAccessorPolicy.Decay 16: [ OK ] BasicAccessorPolicy.Decay (0 ms) 16: [ RUN ] BasicAccessorPolicy.Access -16: [ OK ] BasicAccessorPolicy.Access (1 ms) +16: [ OK ] BasicAccessorPolicy.Access (0 ms) 16: [ RUN ] BasicAccessorPolicy.Offset 16: [ OK ] BasicAccessorPolicy.Offset (0 ms) 16: [ RUN ] BasicAccessorPolicy.CopyAccessor 16: [ OK ] BasicAccessorPolicy.CopyAccessor (0 ms) -16: [----------] 4 tests from BasicAccessorPolicy (1 ms total) +16: [----------] 4 tests from BasicAccessorPolicy (0 ms total) 16: 16: [----------] 4 tests from ExtentsTest 16: [ RUN ] ExtentsTest.Construction @@ -116515,9 +116523,9 @@ 16: [----------] 6 tests from MdSpanTest/1 (0 ms total) 16: 16: [----------] Global test environment tear-down -16: [==========] 32 tests from 7 test cases ran. (1 ms total) +16: [==========] 32 tests from 7 test cases ran. (0 ms total) 16: [ PASSED ] 32 tests. -16/30 Test #16: MDSpanTests ...................... Passed 0.05 sec +16/30 Test #16: MDSpanTests ...................... Passed 0.06 sec test 17 Start 17: OnlineHelpUnitTests @@ -116527,7 +116535,7 @@ 17: [----------] Global test environment set-up. 17: [----------] 6 tests from TextTableFormatterTest 17: [ RUN ] TextTableFormatterTest.HandlesBasicCase -17: [ OK ] TextTableFormatterTest.HandlesBasicCase (1 ms) +17: [ OK ] TextTableFormatterTest.HandlesBasicCase (0 ms) 17: [ RUN ] TextTableFormatterTest.HandlesEmptyColumnTitles 17: [ OK ] TextTableFormatterTest.HandlesEmptyColumnTitles (0 ms) 17: [ RUN ] TextTableFormatterTest.HandlesIndentation @@ -116538,7 +116546,7 @@ 17: [ OK ] TextTableFormatterTest.HandlesLastColumnFolding (0 ms) 17: [ RUN ] TextTableFormatterTest.HandlesEmptyColumns 17: [ OK ] TextTableFormatterTest.HandlesEmptyColumns (0 ms) -17: [----------] 6 tests from TextTableFormatterTest (1 ms total) +17: [----------] 6 tests from TextTableFormatterTest (0 ms total) 17: 17: [----------] 3 tests from HelpManagerTest 17: [ RUN ] HelpManagerTest.HandlesRootTopic @@ -116551,7 +116559,7 @@ 17: 17: [----------] 2 tests from HelpTopicFormattingTest 17: [ RUN ] HelpTopicFormattingTest.FormatsSimpleTopic -17: [ OK ] HelpTopicFormattingTest.FormatsSimpleTopic (0 ms) +17: [ OK ] HelpTopicFormattingTest.FormatsSimpleTopic (1 ms) 17: [ RUN ] HelpTopicFormattingTest.FormatsCompositeTopicWithSubTopics 17: [ OK ] HelpTopicFormattingTest.FormatsCompositeTopicWithSubTopics (0 ms) 17: [----------] 2 tests from HelpTopicFormattingTest (1 ms total) @@ -116582,9 +116590,9 @@ 17: [----------] 11 tests from HelpWriterContextTest (0 ms total) 17: 17: [----------] Global test environment tear-down -17: [==========] 22 tests from 4 test cases ran. (2 ms total) +17: [==========] 22 tests from 4 test cases ran. (1 ms total) 17: [ PASSED ] 22 tests. -17/30 Test #17: OnlineHelpUnitTests .............. Passed 0.05 sec +17/30 Test #17: OnlineHelpUnitTests .............. Passed 0.06 sec test 18 Start 18: OptionsUnitTests @@ -116598,12 +116606,12 @@ 18: [ RUN ] AbstractOptionStorageTest.HandlesValueRemoval 18: [ OK ] AbstractOptionStorageTest.HandlesValueRemoval (0 ms) 18: [ RUN ] AbstractOptionStorageTest.HandlesValueAddition -18: [ OK ] AbstractOptionStorageTest.HandlesValueAddition (1 ms) +18: [ OK ] AbstractOptionStorageTest.HandlesValueAddition (0 ms) 18: [ RUN ] AbstractOptionStorageTest.HandlesTooManyValueAddition -18: [ OK ] AbstractOptionStorageTest.HandlesTooManyValueAddition (0 ms) +18: [ OK ] AbstractOptionStorageTest.HandlesTooManyValueAddition (9 ms) 18: [ RUN ] AbstractOptionStorageTest.AllowsEmptyValues 18: [ OK ] AbstractOptionStorageTest.AllowsEmptyValues (0 ms) -18: [----------] 5 tests from AbstractOptionStorageTest (1 ms total) +18: [----------] 5 tests from AbstractOptionStorageTest (9 ms total) 18: 18: [----------] 8 tests from FileNameOptionTest 18: [ RUN ] FileNameOptionTest.HandlesRequiredDefaultValueWithoutExtension @@ -116655,12 +116663,12 @@ 18: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalFromDefaultNameOptionBasedOnExistingFile (0 ms) 18: [ RUN ] FileNameOptionManagerTest.DefaultNameOptionWorksWithoutInputChecking 18: [ OK ] FileNameOptionManagerTest.DefaultNameOptionWorksWithoutInputChecking (0 ms) -18: [----------] 15 tests from FileNameOptionManagerTest (1 ms total) +18: [----------] 15 tests from FileNameOptionManagerTest (0 ms total) 18: 18: [----------] 1 test from OptionsTest 18: [ RUN ] OptionsTest.FailsOnNonsafeStorage 18: [ OK ] OptionsTest.FailsOnNonsafeStorage (0 ms) -18: [----------] 1 test from OptionsTest (0 ms total) +18: [----------] 1 test from OptionsTest (1 ms total) 18: 18: [----------] 9 tests from OptionsAssignerTest 18: [ RUN ] OptionsAssignerTest.HandlesMissingRequiredParameter @@ -116755,7 +116763,7 @@ 18: [ OK ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVariable (0 ms) 18: [ RUN ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVector 18: [ OK ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVector (0 ms) -18: [----------] 9 tests from OptionsAssignerStringTest (1 ms total) +18: [----------] 9 tests from OptionsAssignerStringTest (0 ms total) 18: 18: [----------] 6 tests from OptionsAssignerEnumTest 18: [ RUN ] OptionsAssignerEnumTest.StoresSingleValue @@ -116789,7 +116797,7 @@ 18: [ OK ] RepeatingOptionSectionTest.HandlesUnsetOptionWithExplicitDefault (0 ms) 18: [ RUN ] RepeatingOptionSectionTest.HandlesNestedSections 18: [ OK ] RepeatingOptionSectionTest.HandlesNestedSections (0 ms) -18: [----------] 8 tests from RepeatingOptionSectionTest (0 ms total) +18: [----------] 8 tests from RepeatingOptionSectionTest (1 ms total) 18: 18: [----------] 1 test from TimeUnitManagerTest 18: [ RUN ] TimeUnitManagerTest.BasicOperations @@ -116834,7 +116842,7 @@ 18: 18: [----------] 6 tests from TreeValueSupportAdjustTest 18: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultValues -18: [ OK ] TreeValueSupportAdjustTest.FillsDefaultValues (1 ms) +18: [ OK ] TreeValueSupportAdjustTest.FillsDefaultValues (0 ms) 18: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultVectorValues 18: [ OK ] TreeValueSupportAdjustTest.FillsDefaultVectorValues (0 ms) 18: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultObjectValues @@ -116863,13 +116871,13 @@ 18: [ RUN ] TreeValueSupportTest.SupportsEnumIntOption 18: [ OK ] TreeValueSupportTest.SupportsEnumIntOption (0 ms) 18: [ RUN ] TreeValueSupportTest.SupportsEnumOption -18: [ OK ] TreeValueSupportTest.SupportsEnumOption (1 ms) -18: [----------] 8 tests from TreeValueSupportTest (1 ms total) +18: [ OK ] TreeValueSupportTest.SupportsEnumOption (0 ms) +18: [----------] 8 tests from TreeValueSupportTest (0 ms total) 18: 18: [----------] Global test environment tear-down -18: [==========] 110 tests from 18 test cases ran. (5 ms total) +18: [==========] 110 tests from 18 test cases ran. (12 ms total) 18: [ PASSED ] 110 tests. -18/30 Test #18: OptionsUnitTests ................. Passed 0.07 sec +18/30 Test #18: OptionsUnitTests ................. Passed 0.08 sec test 19 Start 19: PbcutilUnitTest @@ -116879,8 +116887,8 @@ 19: [----------] Global test environment set-up. 19: [----------] 1 test from PbcTest 19: [ RUN ] PbcTest.CalcShiftsWorks -19: [ OK ] PbcTest.CalcShiftsWorks (1 ms) -19: [----------] 1 test from PbcTest (1 ms total) +19: [ OK ] PbcTest.CalcShiftsWorks (9 ms) +19: [----------] 1 test from PbcTest (9 ms total) 19: 19: [----------] 2 tests from PbcEnumsTest 19: [ RUN ] PbcEnumsTest.CenteringTypeNamesAreCorrect @@ -116890,9 +116898,9 @@ 19: [----------] 2 tests from PbcEnumsTest (0 ms total) 19: 19: [----------] Global test environment tear-down -19: [==========] 3 tests from 2 test cases ran. (1 ms total) +19: [==========] 3 tests from 2 test cases ran. (9 ms total) 19: [ PASSED ] 3 tests. -19/30 Test #19: PbcutilUnitTest .................. Passed 0.05 sec +19/30 Test #19: PbcutilUnitTest .................. Passed 0.06 sec test 20 Start 20: RandomUnitTests @@ -116902,25 +116910,25 @@ 20: [----------] Global test environment set-up. 20: [----------] 4 tests from ExponentialDistributionTest 20: [ RUN ] ExponentialDistributionTest.Output -20: [ OK ] ExponentialDistributionTest.Output (0 ms) +20: [ OK ] ExponentialDistributionTest.Output (1 ms) 20: [ RUN ] ExponentialDistributionTest.Logical 20: [ OK ] ExponentialDistributionTest.Logical (0 ms) 20: [ RUN ] ExponentialDistributionTest.Reset 20: [ OK ] ExponentialDistributionTest.Reset (0 ms) 20: [ RUN ] ExponentialDistributionTest.AltParam 20: [ OK ] ExponentialDistributionTest.AltParam (0 ms) -20: [----------] 4 tests from ExponentialDistributionTest (0 ms total) +20: [----------] 4 tests from ExponentialDistributionTest (1 ms total) 20: 20: [----------] 4 tests from GammaDistributionTest 20: [ RUN ] GammaDistributionTest.Output -20: [ OK ] GammaDistributionTest.Output (1 ms) +20: [ OK ] GammaDistributionTest.Output (0 ms) 20: [ RUN ] GammaDistributionTest.Logical 20: [ OK ] GammaDistributionTest.Logical (0 ms) 20: [ RUN ] GammaDistributionTest.Reset 20: [ OK ] GammaDistributionTest.Reset (0 ms) 20: [ RUN ] GammaDistributionTest.AltParam 20: [ OK ] GammaDistributionTest.AltParam (0 ms) -20: [----------] 4 tests from GammaDistributionTest (1 ms total) +20: [----------] 4 tests from GammaDistributionTest (0 ms total) 20: 20: [----------] 4 tests from NormalDistributionTest 20: [ RUN ] NormalDistributionTest.Output @@ -116955,8 +116963,8 @@ 20: 20: [----------] 1 test from TabulatedNormalDistributionTableTest 20: [ RUN ] TabulatedNormalDistributionTableTest.HasValidProperties -20: [ OK ] TabulatedNormalDistributionTableTest.HasValidProperties (5 ms) -20: [----------] 1 test from TabulatedNormalDistributionTableTest (5 ms total) +20: [ OK ] TabulatedNormalDistributionTableTest.HasValidProperties (6 ms) +20: [----------] 1 test from TabulatedNormalDistributionTableTest (6 ms total) 20: 20: [----------] 6 tests from ThreeFry2x64Test 20: [ RUN ] ThreeFry2x64Test.Logical @@ -116968,10 +116976,10 @@ 20: [ RUN ] ThreeFry2x64Test.Discard 20: [ OK ] ThreeFry2x64Test.Discard (0 ms) 20: [ RUN ] ThreeFry2x64Test.InvalidCounter -20: [ OK ] ThreeFry2x64Test.InvalidCounter (1 ms) +20: [ OK ] ThreeFry2x64Test.InvalidCounter (0 ms) 20: [ RUN ] ThreeFry2x64Test.ExhaustInternalCounter 20: [ OK ] ThreeFry2x64Test.ExhaustInternalCounter (0 ms) -20: [----------] 6 tests from ThreeFry2x64Test (1 ms total) +20: [----------] 6 tests from ThreeFry2x64Test (0 ms total) 20: 20: [----------] 4 tests from UniformIntDistributionTest 20: [ RUN ] UniformIntDistributionTest.Output @@ -116986,7 +116994,7 @@ 20: 20: [----------] 5 tests from UniformRealDistributionTest 20: [ RUN ] UniformRealDistributionTest.GenerateCanonical -20: [ OK ] UniformRealDistributionTest.GenerateCanonical (0 ms) +20: [ OK ] UniformRealDistributionTest.GenerateCanonical (1 ms) 20: [ RUN ] UniformRealDistributionTest.Output 20: [ OK ] UniformRealDistributionTest.Output (0 ms) 20: [ RUN ] UniformRealDistributionTest.Logical @@ -116995,7 +117003,7 @@ 20: [ OK ] UniformRealDistributionTest.Reset (0 ms) 20: [ RUN ] UniformRealDistributionTest.AltParam 20: [ OK ] UniformRealDistributionTest.AltParam (0 ms) -20: [----------] 5 tests from UniformRealDistributionTest (0 ms total) +20: [----------] 5 tests from UniformRealDistributionTest (1 ms total) 20: 20: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test 20: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/0 @@ -117015,13 +117023,13 @@ 20: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/1 20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/1 (0 ms) 20: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/2 -20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/2 (1 ms) -20: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test (1 ms total) +20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/2 (0 ms) +20: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test (0 ms total) 20: 20: [----------] Global test environment tear-down 20: [==========] 44 tests from 10 test cases ran. (8 ms total) 20: [ PASSED ] 44 tests. -20/30 Test #20: RandomUnitTests .................. Passed 0.07 sec +20/30 Test #20: RandomUnitTests .................. Passed 0.09 sec test 21 Start 21: RestraintTests @@ -117037,7 +117045,7 @@ 21: [----------] Global test environment tear-down 21: [==========] 1 test from 1 test case ran. (0 ms total) 21: [ PASSED ] 1 test. -21/30 Test #21: RestraintTests ................... Passed 0.04 sec +21/30 Test #21: RestraintTests ................... Passed 0.06 sec test 22 Start 22: TableUnitTests @@ -117047,34 +117055,34 @@ 22: [----------] Global test environment set-up. 22: [----------] 10 tests from SplineTableTest/0, where TypeParam = gmx::QuadraticSplineTable 22: [ RUN ] SplineTableTest/0.HandlesIncorrectInput -22: [ OK ] SplineTableTest/0.HandlesIncorrectInput (2 ms) +22: [ OK ] SplineTableTest/0.HandlesIncorrectInput (1 ms) 22: [ RUN ] SplineTableTest/0.Sinc -22: [ OK ] SplineTableTest/0.Sinc (0 ms) +22: [ OK ] SplineTableTest/0.Sinc (1 ms) 22: [ RUN ] SplineTableTest/0.LJ12 -22: [ OK ] SplineTableTest/0.LJ12 (31 ms) +22: [ OK ] SplineTableTest/0.LJ12 (23 ms) 22: [ RUN ] SplineTableTest/0.PmeCorrection -22: [ OK ] SplineTableTest/0.PmeCorrection (1 ms) +22: [ OK ] SplineTableTest/0.PmeCorrection (2 ms) 22: [ RUN ] SplineTableTest/0.HandlesIncorrectNumericalInput 22: [ OK ] SplineTableTest/0.HandlesIncorrectNumericalInput (0 ms) 22: [ RUN ] SplineTableTest/0.NumericalInputPmeCorr 22: [ OK ] SplineTableTest/0.NumericalInputPmeCorr (1 ms) 22: [ RUN ] SplineTableTest/0.TwoFunctions -22: [ OK ] SplineTableTest/0.TwoFunctions (49 ms) +22: [ OK ] SplineTableTest/0.TwoFunctions (43 ms) 22: [ RUN ] SplineTableTest/0.ThreeFunctions -22: [ OK ] SplineTableTest/0.ThreeFunctions (52 ms) +22: [ OK ] SplineTableTest/0.ThreeFunctions (30 ms) 22: [ RUN ] SplineTableTest/0.Simd -22: [ OK ] SplineTableTest/0.Simd (10 ms) +22: [ OK ] SplineTableTest/0.Simd (7 ms) 22: [ RUN ] SplineTableTest/0.SimdTwoFunctions -22: [ OK ] SplineTableTest/0.SimdTwoFunctions (51 ms) -22: [----------] 10 tests from SplineTableTest/0 (201 ms total) +22: [ OK ] SplineTableTest/0.SimdTwoFunctions (27 ms) +22: [----------] 10 tests from SplineTableTest/0 (135 ms total) 22: 22: [----------] 10 tests from SplineTableTest/1, where TypeParam = gmx::CubicSplineTable 22: [ RUN ] SplineTableTest/1.HandlesIncorrectInput 22: [ OK ] SplineTableTest/1.HandlesIncorrectInput (1 ms) 22: [ RUN ] SplineTableTest/1.Sinc -22: [ OK ] SplineTableTest/1.Sinc (1 ms) +22: [ OK ] SplineTableTest/1.Sinc (0 ms) 22: [ RUN ] SplineTableTest/1.LJ12 -22: [ OK ] SplineTableTest/1.LJ12 (6 ms) +22: [ OK ] SplineTableTest/1.LJ12 (2 ms) 22: [ RUN ] SplineTableTest/1.PmeCorrection 22: [ OK ] SplineTableTest/1.PmeCorrection (1 ms) 22: [ RUN ] SplineTableTest/1.HandlesIncorrectNumericalInput @@ -117082,19 +117090,19 @@ 22: [ RUN ] SplineTableTest/1.NumericalInputPmeCorr 22: [ OK ] SplineTableTest/1.NumericalInputPmeCorr (1 ms) 22: [ RUN ] SplineTableTest/1.TwoFunctions -22: [ OK ] SplineTableTest/1.TwoFunctions (9 ms) +22: [ OK ] SplineTableTest/1.TwoFunctions (3 ms) 22: [ RUN ] SplineTableTest/1.ThreeFunctions -22: [ OK ] SplineTableTest/1.ThreeFunctions (8 ms) +22: [ OK ] SplineTableTest/1.ThreeFunctions (4 ms) 22: [ RUN ] SplineTableTest/1.Simd 22: [ OK ] SplineTableTest/1.Simd (1 ms) 22: [ RUN ] SplineTableTest/1.SimdTwoFunctions -22: [ OK ] SplineTableTest/1.SimdTwoFunctions (8 ms) -22: [----------] 10 tests from SplineTableTest/1 (37 ms total) +22: [ OK ] SplineTableTest/1.SimdTwoFunctions (3 ms) +22: [----------] 10 tests from SplineTableTest/1 (16 ms total) 22: 22: [----------] Global test environment tear-down -22: [==========] 20 tests from 2 test cases ran. (242 ms total) +22: [==========] 20 tests from 2 test cases ran. (153 ms total) 22: [ PASSED ] 20 tests. -22/30 Test #22: TableUnitTests ................... Passed 0.30 sec +22/30 Test #22: TableUnitTests ................... Passed 0.21 sec test 23 Start 23: TaskAssignmentUnitTests @@ -117104,20 +117112,20 @@ 23: [----------] Global test environment set-up. 23: [----------] 2 tests from UserTaskAssignmentStringHandlingTest 23: [ RUN ] UserTaskAssignmentStringHandlingTest.ParsingAndReconstructionWork -23: [ OK ] UserTaskAssignmentStringHandlingTest.ParsingAndReconstructionWork (0 ms) +23: [ OK ] UserTaskAssignmentStringHandlingTest.ParsingAndReconstructionWork (1 ms) 23: [ RUN ] UserTaskAssignmentStringHandlingTest.EmptyStringCanBeValid 23: [ OK ] UserTaskAssignmentStringHandlingTest.EmptyStringCanBeValid (0 ms) -23: [----------] 2 tests from UserTaskAssignmentStringHandlingTest (0 ms total) +23: [----------] 2 tests from UserTaskAssignmentStringHandlingTest (1 ms total) 23: 23: [----------] 1 test from GpuIdAndAssignmentStringHandlingTest 23: [ RUN ] GpuIdAndAssignmentStringHandlingTest.InvalidInputsThrow -23: [ OK ] GpuIdAndAssignmentStringHandlingTest.InvalidInputsThrow (1 ms) -23: [----------] 1 test from GpuIdAndAssignmentStringHandlingTest (1 ms total) +23: [ OK ] GpuIdAndAssignmentStringHandlingTest.InvalidInputsThrow (0 ms) +23: [----------] 1 test from GpuIdAndAssignmentStringHandlingTest (0 ms total) 23: 23: [----------] Global test environment tear-down 23: [==========] 3 tests from 2 test cases ran. (1 ms total) 23: [ PASSED ] 3 tests. -23/30 Test #23: TaskAssignmentUnitTests .......... Passed 0.05 sec +23/30 Test #23: TaskAssignmentUnitTests .......... Passed 0.06 sec test 24 Start 24: TopologyTest @@ -117132,18 +117140,18 @@ 24: [ OK ] ExclusionBlockTest.ConvertExclusionBlockToBlocka (0 ms) 24: [ RUN ] ExclusionBlockTest.MergeExclusions 24: [ OK ] ExclusionBlockTest.MergeExclusions (0 ms) -24: [----------] 3 tests from ExclusionBlockTest (1 ms total) +24: [----------] 3 tests from ExclusionBlockTest (0 ms total) 24: 24: [----------] 2 tests from MtopTest 24: [ RUN ] MtopTest.RangeBasedLoop 24: [ OK ] MtopTest.RangeBasedLoop (0 ms) 24: [ RUN ] MtopTest.Operators 24: [ OK ] MtopTest.Operators (0 ms) -24: [----------] 2 tests from MtopTest (0 ms total) +24: [----------] 2 tests from MtopTest (1 ms total) 24: 24: [----------] 6 tests from SymtabTest 24: [ RUN ] SymtabTest.EmptyOnOpen -24: [ OK ] SymtabTest.EmptyOnOpen (0 ms) +24: [ OK ] SymtabTest.EmptyOnOpen (8 ms) 24: [ RUN ] SymtabTest.AddSingleEntry 24: [ OK ] SymtabTest.AddSingleEntry (0 ms) 24: [ RUN ] SymtabTest.AddTwoDistinctEntries @@ -117154,12 +117162,12 @@ 24: [ OK ] SymtabTest.AddLargeNumberOfEntries (0 ms) 24: [ RUN ] SymtabTest.NoDuplicatesInLargeTable 24: [ OK ] SymtabTest.NoDuplicatesInLargeTable (0 ms) -24: [----------] 6 tests from SymtabTest (0 ms total) +24: [----------] 6 tests from SymtabTest (8 ms total) 24: 24: [----------] Global test environment tear-down -24: [==========] 11 tests from 3 test cases ran. (1 ms total) +24: [==========] 11 tests from 3 test cases ran. (9 ms total) 24: [ PASSED ] 11 tests. -24/30 Test #24: TopologyTest ..................... Passed 0.06 sec +24/30 Test #24: TopologyTest ..................... Passed 0.07 sec test 25 Start 25: PullTest @@ -117181,7 +117189,7 @@ 25: [----------] 5 tests from PullTest (0 ms total) 25: 25: [----------] Global test environment tear-down -25: [==========] 5 tests from 1 test case ran. (6 ms total) +25: [==========] 5 tests from 1 test case ran. (1 ms total) 25: [ PASSED ] 5 tests. 25/30 Test #25: PullTest ......................... Passed 0.05 sec test 26 @@ -117203,22 +117211,22 @@ 26: 26: [----------] 8 tests from WithParameters/BiasTest 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/0 -26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/0 (0 ms) +26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/0 (1 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/1 -26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/1 (1 ms) +26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/1 (0 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/2 -26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/2 (0 ms) +26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/2 (1 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/3 -26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/3 (4 ms) +26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/3 (0 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/4 -26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/4 (1 ms) +26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/4 (0 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/5 -26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/5 (0 ms) +26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/5 (1 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/6 -26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/6 (1 ms) +26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/6 (0 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/7 -26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/7 (0 ms) -26: [----------] 8 tests from WithParameters/BiasTest (7 ms total) +26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/7 (1 ms) +26: [----------] 8 tests from WithParameters/BiasTest (4 ms total) 26: 26: [----------] 2 tests from WithParameters/BiasStateTest 26: [ RUN ] WithParameters/BiasStateTest.InitializesFromFile/0 @@ -117228,9 +117236,9 @@ 26: [----------] 2 tests from WithParameters/BiasStateTest (0 ms total) 26: 26: [----------] Global test environment tear-down -26: [==========] 12 tests from 4 test cases ran. (9 ms total) +26: [==========] 12 tests from 4 test cases ran. (6 ms total) 26: [ PASSED ] 12 tests. -26/30 Test #26: AwhTest .......................... Passed 0.07 sec +26/30 Test #26: AwhTest .......................... Passed 0.05 sec test 27 Start 27: SimdUnitTests @@ -117359,7 +117367,7 @@ 27: [ RUN ] SimdFloatingpointUtilTest.gatherLoadUTranspose3 27: [ OK ] SimdFloatingpointUtilTest.gatherLoadUTranspose3 (0 ms) 27: [ RUN ] SimdFloatingpointUtilTest.transposeScatterStoreU3 -27: [ OK ] SimdFloatingpointUtilTest.transposeScatterStoreU3 (0 ms) +27: [ OK ] SimdFloatingpointUtilTest.transposeScatterStoreU3 (1 ms) 27: [ RUN ] SimdFloatingpointUtilTest.transposeScatterIncrU3 27: [ OK ] SimdFloatingpointUtilTest.transposeScatterIncrU3 (0 ms) 27: [ RUN ] SimdFloatingpointUtilTest.transposeScatterIncrU3Overlapping @@ -117415,9 +117423,9 @@ 27: [ RUN ] SimdMathTest.maskzInv 27: [ OK ] SimdMathTest.maskzInv (0 ms) 27: [ RUN ] SimdMathTest.cbrt -27: [ OK ] SimdMathTest.cbrt (1 ms) +27: [ OK ] SimdMathTest.cbrt (2 ms) 27: [ RUN ] SimdMathTest.invcbrt -27: [ OK ] SimdMathTest.invcbrt (9 ms) +27: [ OK ] SimdMathTest.invcbrt (1 ms) 27: [ RUN ] SimdMathTest.log2 27: [ OK ] SimdMathTest.log2 (1 ms) 27: [ RUN ] SimdMathTest.log @@ -117425,25 +117433,25 @@ 27: [ RUN ] SimdMathTest.exp2 27: [ OK ] SimdMathTest.exp2 (2 ms) 27: [ RUN ] SimdMathTest.exp2Unsafe -27: [ OK ] SimdMathTest.exp2Unsafe (9 ms) +27: [ OK ] SimdMathTest.exp2Unsafe (1 ms) 27: [ RUN ] SimdMathTest.exp -27: [ OK ] SimdMathTest.exp (2 ms) +27: [ OK ] SimdMathTest.exp (5 ms) 27: [ RUN ] SimdMathTest.expUnsafe -27: [ OK ] SimdMathTest.expUnsafe (1 ms) +27: [ OK ] SimdMathTest.expUnsafe (0 ms) 27: [ RUN ] SimdMathTest.pow 27: [ OK ] SimdMathTest.pow (0 ms) 27: [ RUN ] SimdMathTest.powUnsafe 27: [ OK ] SimdMathTest.powUnsafe (0 ms) 27: [ RUN ] SimdMathTest.erf -27: [ OK ] SimdMathTest.erf (9 ms) +27: [ OK ] SimdMathTest.erf (2 ms) 27: [ RUN ] SimdMathTest.erfc 27: [ OK ] SimdMathTest.erfc (2 ms) 27: [ RUN ] SimdMathTest.sin 27: [ OK ] SimdMathTest.sin (1 ms) 27: [ RUN ] SimdMathTest.cos -27: [ OK ] SimdMathTest.cos (10 ms) +27: [ OK ] SimdMathTest.cos (2 ms) 27: [ RUN ] SimdMathTest.tan -27: [ OK ] SimdMathTest.tan (1 ms) +27: [ OK ] SimdMathTest.tan (4 ms) 27: [ RUN ] SimdMathTest.asin 27: [ OK ] SimdMathTest.asin (1 ms) 27: [ RUN ] SimdMathTest.acos @@ -117455,49 +117463,49 @@ 27: [ RUN ] SimdMathTest.pmeForceCorrection 27: [ OK ] SimdMathTest.pmeForceCorrection (1 ms) 27: [ RUN ] SimdMathTest.pmePotentialCorrection -27: [ OK ] SimdMathTest.pmePotentialCorrection (0 ms) +27: [ OK ] SimdMathTest.pmePotentialCorrection (1 ms) 27: [ RUN ] SimdMathTest.invsqrtSingleAccuracy -27: [ OK ] SimdMathTest.invsqrtSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.invsqrtSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.invsqrtPairSingleAccuracy -27: [ OK ] SimdMathTest.invsqrtPairSingleAccuracy (8 ms) +27: [ OK ] SimdMathTest.invsqrtPairSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.sqrtSingleAccuracy -27: [ OK ] SimdMathTest.sqrtSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.sqrtSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.sqrtSingleAccuracyUnsafe 27: [ OK ] SimdMathTest.sqrtSingleAccuracyUnsafe (0 ms) 27: [ RUN ] SimdMathTest.invSingleAccuracy 27: [ OK ] SimdMathTest.invSingleAccuracy (3 ms) 27: [ RUN ] SimdMathTest.cbrtSingleAccuracy -27: [ OK ] SimdMathTest.cbrtSingleAccuracy (8 ms) +27: [ OK ] SimdMathTest.cbrtSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.invcbrtSingleAccuracy 27: [ OK ] SimdMathTest.invcbrtSingleAccuracy (2 ms) 27: [ RUN ] SimdMathTest.log2SingleAccuracy -27: [ OK ] SimdMathTest.log2SingleAccuracy (0 ms) +27: [ OK ] SimdMathTest.log2SingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.logSingleAccuracy -27: [ OK ] SimdMathTest.logSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.logSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.exp2SingleAccuracy -27: [ OK ] SimdMathTest.exp2SingleAccuracy (10 ms) +27: [ OK ] SimdMathTest.exp2SingleAccuracy (2 ms) 27: [ RUN ] SimdMathTest.exp2SingleAccuracyUnsafe -27: [ OK ] SimdMathTest.exp2SingleAccuracyUnsafe (0 ms) +27: [ OK ] SimdMathTest.exp2SingleAccuracyUnsafe (1 ms) 27: [ RUN ] SimdMathTest.expSingleAccuracy -27: [ OK ] SimdMathTest.expSingleAccuracy (3 ms) +27: [ OK ] SimdMathTest.expSingleAccuracy (2 ms) 27: [ RUN ] SimdMathTest.expSingleAccuracyUnsafe -27: [ OK ] SimdMathTest.expSingleAccuracyUnsafe (8 ms) +27: [ OK ] SimdMathTest.expSingleAccuracyUnsafe (2 ms) 27: [ RUN ] SimdMathTest.powSingleAccuracy 27: [ OK ] SimdMathTest.powSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.powSingleAccuracyUnsafe 27: [ OK ] SimdMathTest.powSingleAccuracyUnsafe (0 ms) 27: [ RUN ] SimdMathTest.erfSingleAccuracy -27: [ OK ] SimdMathTest.erfSingleAccuracy (2 ms) +27: [ OK ] SimdMathTest.erfSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.erfcSingleAccuracy 27: [ OK ] SimdMathTest.erfcSingleAccuracy (2 ms) 27: [ RUN ] SimdMathTest.sinSingleAccuracy -27: [ OK ] SimdMathTest.sinSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.sinSingleAccuracy (2 ms) 27: [ RUN ] SimdMathTest.cosSingleAccuracy 27: [ OK ] SimdMathTest.cosSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.tanSingleAccuracy 27: [ OK ] SimdMathTest.tanSingleAccuracy (2 ms) 27: [ RUN ] SimdMathTest.asinSingleAccuracy -27: [ OK ] SimdMathTest.asinSingleAccuracy (9 ms) +27: [ OK ] SimdMathTest.asinSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.acosSingleAccuracy 27: [ OK ] SimdMathTest.acosSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.atanSingleAccuracy @@ -117507,8 +117515,8 @@ 27: [ RUN ] SimdMathTest.pmeForceCorrectionSingleAccuracy 27: [ OK ] SimdMathTest.pmeForceCorrectionSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.pmePotentialCorrectionSingleAccuracy -27: [ OK ] SimdMathTest.pmePotentialCorrectionSingleAccuracy (1 ms) -27: [----------] 56 tests from SimdMathTest (122 ms total) +27: [ OK ] SimdMathTest.pmePotentialCorrectionSingleAccuracy (0 ms) +27: [----------] 56 tests from SimdMathTest (59 ms total) 27: 27: [----------] 1 test from EmptyArrayRefTest 27: [ RUN ] EmptyArrayRefTest.IsEmpty @@ -117531,7 +117539,7 @@ 27: [ OK ] ArrayRefTest/1.ConstructFromArrayRefWorks (0 ms) 27: [ RUN ] ArrayRefTest/1.ConstructFromArrayWorks 27: [ OK ] ArrayRefTest/1.ConstructFromArrayWorks (0 ms) -27: [----------] 3 tests from ArrayRefTest/1 (8 ms total) +27: [----------] 3 tests from ArrayRefTest/1 (0 ms total) 27: 27: [----------] 3 tests from ArrayRefTest/2, where TypeParam = gmx::ArrayRef 27: [ RUN ] ArrayRefTest/2.ConstructFromPointersWorks @@ -117569,7 +117577,7 @@ 27: [----------] 1 test from ArrayRefArithmeticTest/1, where TypeParam = gmx::ArrayRef 27: [ RUN ] ArrayRefArithmeticTest/1.Basic 27: [ OK ] ArrayRefArithmeticTest/1.Basic (0 ms) -27: [----------] 1 test from ArrayRefArithmeticTest/1 (1 ms total) +27: [----------] 1 test from ArrayRefArithmeticTest/1 (0 ms total) 27: 27: [----------] 23 tests from SimdIntegerTest 27: [ RUN ] SimdIntegerTest.setZero @@ -117878,12 +117886,12 @@ 27: [ OK ] SimdScalarMathTest.pmeForceCorrectionSingleAccuracy (0 ms) 27: [ RUN ] SimdScalarMathTest.pmePotentialCorrectionSingleAccuracy 27: [ OK ] SimdScalarMathTest.pmePotentialCorrectionSingleAccuracy (0 ms) -27: [----------] 37 tests from SimdScalarMathTest (0 ms total) +27: [----------] 37 tests from SimdScalarMathTest (1 ms total) 27: 27: [----------] Global test environment tear-down -27: [==========] 288 tests from 22 test cases ran. (133 ms total) +27: [==========] 288 tests from 22 test cases ran. (63 ms total) 27: [ PASSED ] 288 tests. -27/30 Test #27: SimdUnitTests .................... Passed 0.22 sec +27/30 Test #27: SimdUnitTests .................... Passed 0.10 sec test 28 Start 28: CompatibilityHelpersTests @@ -117913,7 +117921,7 @@ 28: [ RUN ] OptionalTest.CanMoveConstructFromEmptyOptionalNonExplicitConverting 28: [ OK ] OptionalTest.CanMoveConstructFromEmptyOptionalNonExplicitConverting (0 ms) 28: [ RUN ] OptionalTest.CanCopyConstructFromNonEmptyOptional -28: [ OK ] OptionalTest.CanCopyConstructFromNonEmptyOptional (1 ms) +28: [ OK ] OptionalTest.CanCopyConstructFromNonEmptyOptional (0 ms) 28: [ RUN ] OptionalTest.CanCopyConstructFromNonEmptyOptionalExplicitConverting 28: [ OK ] OptionalTest.CanCopyConstructFromNonEmptyOptionalExplicitConverting (0 ms) 28: [ RUN ] OptionalTest.CanCopyConstructFromNonEmptyOptionalNonExplicitConverting @@ -117951,7 +117959,7 @@ 28: [ RUN ] OptionalTest.CanAssignNulloptToDisengage 28: [ OK ] OptionalTest.CanAssignNulloptToDisengage (0 ms) 28: [ RUN ] OptionalTest.CanCopyAssignBetweenEngagedAndDisengagedOptionals -28: [ OK ] OptionalTest.CanCopyAssignBetweenEngagedAndDisengagedOptionals (0 ms) +28: [ OK ] OptionalTest.CanCopyAssignBetweenEngagedAndDisengagedOptionals (1 ms) 28: [ RUN ] OptionalTest.CanCopyAssignBetweenEngagedAndDisengagedOptionalsConverting 28: [ OK ] OptionalTest.CanCopyAssignBetweenEngagedAndDisengagedOptionalsConverting (0 ms) 28: [ RUN ] OptionalTest.CanMoveAssignBetweenEngagedAndDisengagedOptionalsConverting @@ -117961,7 +117969,7 @@ 28: [ RUN ] OptionalTest.CanCopyAssignFromValue 28: [ OK ] OptionalTest.CanCopyAssignFromValue (0 ms) 28: [ RUN ] OptionalTest.CanMoveAssignFromValue -28: [ OK ] OptionalTest.CanMoveAssignFromValue (0 ms) +28: [ OK ] OptionalTest.CanMoveAssignFromValue (1 ms) 28: [ RUN ] OptionalTest.CanCopyEmplaceFromArguments 28: [ OK ] OptionalTest.CanCopyEmplaceFromArguments (0 ms) 28: [ RUN ] OptionalTest.CanMoveEmplaceFromArguments @@ -117999,7 +118007,7 @@ 28: sizeof( optional ): 32 (16) 28: sizeof( optional ): 2 (1) 28: [ OK ] OptionalTest.ShowSizeDependingOnBaseType (0 ms) -28: [----------] 45 tests from OptionalTest (1 ms total) +28: [----------] 45 tests from OptionalTest (3 ms total) 28: 28: [----------] 7 tests from MakeOptionalTest 28: [ RUN ] MakeOptionalTest.CanMoveAssignBetweenEngagedAndDisengagedOptionals @@ -118038,7 +118046,7 @@ 28: [ OK ] OptionalImplicitValueTest.CanObtainMovedFromValueConst (0 ms) 28: [ RUN ] OptionalImplicitValueTest.CanObtainMovedFromValueNonConst 28: [ OK ] OptionalImplicitValueTest.CanObtainMovedFromValueNonConst (0 ms) -28: [----------] 4 tests from OptionalImplicitValueTest (1 ms total) +28: [----------] 4 tests from OptionalImplicitValueTest (0 ms total) 28: 28: [----------] 20 tests from OptionalIntValueTest 28: [ RUN ] OptionalIntValueTest.CanObtainValueFromDereferenceOperatorConst @@ -118068,7 +118076,7 @@ 28: [ RUN ] OptionalIntValueTest.CanObtainMovedFromValueForRValuesViaValueOrMethod 28: [ OK ] OptionalIntValueTest.CanObtainMovedFromValueForRValuesViaValueOrMethod (0 ms) 28: [ RUN ] OptionalIntValueTest.ThrowsBadOptionalAccessAtDisengagedAccessForLValues -28: [ OK ] OptionalIntValueTest.ThrowsBadOptionalAccessAtDisengagedAccessForLValues (0 ms) +28: [ OK ] OptionalIntValueTest.ThrowsBadOptionalAccessAtDisengagedAccessForLValues (1 ms) 28: [ RUN ] OptionalIntValueTest.ThrowsBadOptionalAccessAtDisengagedAccessForRValues 28: [ OK ] OptionalIntValueTest.ThrowsBadOptionalAccessAtDisengagedAccessForRValues (0 ms) 28: [ RUN ] OptionalIntValueTest.ThrowsBadOptionalAccessWithNonEmptyWhatMethod @@ -118081,7 +118089,7 @@ 28: [ OK ] OptionalIntValueTest.CanNonMemberSwapDisengagnedWithEngaged (0 ms) 28: [ RUN ] OptionalIntValueTest.CanNonMemberSwapEngagnedWithDisengaged 28: [ OK ] OptionalIntValueTest.CanNonMemberSwapEngagnedWithDisengaged (0 ms) -28: [----------] 20 tests from OptionalIntValueTest (0 ms total) +28: [----------] 20 tests from OptionalIntValueTest (1 ms total) 28: 28: [----------] 1 test from NotNullConstruction 28: [ RUN ] NotNullConstruction.Works @@ -118285,9 +118293,9 @@ 28: [----------] 5 tests from StringViewExtensionTest (0 ms total) 28: 28: [----------] Global test environment tear-down -28: [==========] 170 tests from 12 test cases ran. (8 ms total) +28: [==========] 170 tests from 12 test cases ran. (5 ms total) 28: [ PASSED ] 170 tests. -28/30 Test #28: CompatibilityHelpersTests ........ Passed 0.07 sec +28/30 Test #28: CompatibilityHelpersTests ........ Passed 0.04 sec test 29 Start 29: FileIOTests @@ -118297,10 +118305,10 @@ 29: [----------] Global test environment set-up. 29: [----------] 2 tests from FileMD5Test 29: [ RUN ] FileMD5Test.CanComputeMD5 -29: [ OK ] FileMD5Test.CanComputeMD5 (5 ms) +29: [ OK ] FileMD5Test.CanComputeMD5 (1 ms) 29: [ RUN ] FileMD5Test.ReturnsErrorIfFileModeIsWrong -29: [ OK ] FileMD5Test.ReturnsErrorIfFileModeIsWrong (0 ms) -29: [----------] 2 tests from FileMD5Test (5 ms total) +29: [ OK ] FileMD5Test.ReturnsErrorIfFileModeIsWrong (1 ms) +29: [----------] 2 tests from FileMD5Test (2 ms total) 29: 29: [----------] 3 tests from MrcSerializer 29: [ RUN ] MrcSerializer.DefaultHeaderValuesAreSet @@ -118313,14 +118321,14 @@ 29: 29: [----------] 4 tests from MrcDensityMap 29: [ RUN ] MrcDensityMap.RoundTripIsIdempotent -29: [ OK ] MrcDensityMap.RoundTripIsIdempotent (1 ms) +29: [ OK ] MrcDensityMap.RoundTripIsIdempotent (0 ms) 29: [ RUN ] MrcDensityMap.ThrowsFileIOErrorWhenFileNotPresent 29: [ OK ] MrcDensityMap.ThrowsFileIOErrorWhenFileNotPresent (0 ms) 29: [ RUN ] MrcDensityMap.ReadsCoordinateTransformationFromFile -29: [ OK ] MrcDensityMap.ReadsCoordinateTransformationFromFile (0 ms) +29: [ OK ] MrcDensityMap.ReadsCoordinateTransformationFromFile (2 ms) 29: [ RUN ] MrcDensityMap.ReadsDensityDataFromFile -29: [ OK ] MrcDensityMap.ReadsDensityDataFromFile (1 ms) -29: [----------] 4 tests from MrcDensityMap (2 ms total) +29: [ OK ] MrcDensityMap.ReadsDensityDataFromFile (0 ms) +29: [----------] 4 tests from MrcDensityMap (3 ms total) 29: 29: [----------] 8 tests from MrcDensityMapHeaderTest 29: [ RUN ] MrcDensityMapHeaderTest.DataSizeIsZeroForDefaultHeader @@ -118332,14 +118340,14 @@ 29: [ RUN ] MrcDensityMapHeaderTest.GetsCorrectCoordinateTransformNoOriginGiven 29: [ OK ] MrcDensityMapHeaderTest.GetsCorrectCoordinateTransformNoOriginGiven (0 ms) 29: [ RUN ] MrcDensityMapHeaderTest.GetsCorrectCoordinateTransformWithOriginDefined -29: [ OK ] MrcDensityMapHeaderTest.GetsCorrectCoordinateTransformWithOriginDefined (4 ms) +29: [ OK ] MrcDensityMapHeaderTest.GetsCorrectCoordinateTransformWithOriginDefined (0 ms) 29: [ RUN ] MrcDensityMapHeaderTest.GetsCorrectCoordinateTransformWithStartValues 29: [ OK ] MrcDensityMapHeaderTest.GetsCorrectCoordinateTransformWithStartValues (0 ms) 29: [ RUN ] MrcDensityMapHeaderTest.GetsCorrectExtents 29: [ OK ] MrcDensityMapHeaderTest.GetsCorrectExtents (0 ms) 29: [ RUN ] MrcDensityMapHeaderTest.IsSane 29: [ OK ] MrcDensityMapHeaderTest.IsSane (0 ms) -29: [----------] 8 tests from MrcDensityMapHeaderTest (4 ms total) +29: [----------] 8 tests from MrcDensityMapHeaderTest (0 ms total) 29: 29: [----------] 9 tests from ReadTest 29: [ RUN ] ReadTest.get_eint_ReadsInteger @@ -118351,7 +118359,7 @@ 29: integer value 29: 29: -29: [ OK ] ReadTest.get_eint_WarnsAboutFloat (1 ms) +29: [ OK ] ReadTest.get_eint_WarnsAboutFloat (0 ms) 29: [ RUN ] ReadTest.get_eint_WarnsAboutString 29: 29: ERROR 1 [file unknown, line 0]: @@ -118390,7 +118398,7 @@ 29: 29: 29: [ OK ] ReadTest.get_ereal_WarnsAboutString (0 ms) -29: [----------] 9 tests from ReadTest (1 ms total) +29: [----------] 9 tests from ReadTest (0 ms total) 29: 29: [----------] 1 test from FileIOXdrSerializerTest 29: [ RUN ] FileIOXdrSerializerTest.SizeIsCorrect @@ -118408,19 +118416,19 @@ 29: 29: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest 29: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 -29: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 (0 ms) +29: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 (1 ms) 29: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 -29: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 (1 ms) +29: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 (0 ms) 29: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 -29: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 (1 ms) +29: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 (5 ms) 29: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 29: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 (0 ms) -29: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest (2 ms total) +29: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest (6 ms total) 29: 29: [----------] Global test environment tear-down -29: [==========] 33 tests from 8 test cases ran. (15 ms total) +29: [==========] 33 tests from 8 test cases ran. (12 ms total) 29: [ PASSED ] 33 tests. -29/30 Test #29: FileIOTests ...................... Passed 0.07 sec +29/30 Test #29: FileIOTests ...................... Passed 0.04 sec test 30 Start 30: SelectionUnitTests @@ -118441,9 +118449,9 @@ 30: [ RUN ] IndexBlockTest.CreatesResidueBlocksForSimpleTopology 30: [ OK ] IndexBlockTest.CreatesResidueBlocksForSimpleTopology (0 ms) 30: [ RUN ] IndexBlockTest.CreatesResidueBlocksForComplexTopology -30: [ OK ] IndexBlockTest.CreatesResidueBlocksForComplexTopology (0 ms) +30: [ OK ] IndexBlockTest.CreatesResidueBlocksForComplexTopology (1 ms) 30: [ RUN ] IndexBlockTest.CreatesMoleculeBlocksForSimpleTopology -30: [ OK ] IndexBlockTest.CreatesMoleculeBlocksForSimpleTopology (1 ms) +30: [ OK ] IndexBlockTest.CreatesMoleculeBlocksForSimpleTopology (0 ms) 30: [ RUN ] IndexBlockTest.CreatesMoleculeBlocksForComplexTopology 30: [ OK ] IndexBlockTest.CreatesMoleculeBlocksForComplexTopology (0 ms) 30: [ RUN ] IndexBlockTest.CreatesSingleBlock @@ -118484,16 +118492,16 @@ 30: [ RUN ] IndexMapTest.MapsSingleBlock 30: [ OK ] IndexMapTest.MapsSingleBlock (0 ms) 30: [ RUN ] IndexMapTest.MapsResidueBlocks -30: [ OK ] IndexMapTest.MapsResidueBlocks (1 ms) +30: [ OK ] IndexMapTest.MapsResidueBlocks (0 ms) 30: [ RUN ] IndexMapTest.MapsResidueBlocksWithMask -30: [ OK ] IndexMapTest.MapsResidueBlocksWithMask (0 ms) +30: [ OK ] IndexMapTest.MapsResidueBlocksWithMask (2 ms) 30: [ RUN ] IndexMapTest.HandlesMultipleRequests -30: [ OK ] IndexMapTest.HandlesMultipleRequests (8 ms) -30: [----------] 11 tests from IndexMapTest (10 ms total) +30: [ OK ] IndexMapTest.HandlesMultipleRequests (0 ms) +30: [----------] 11 tests from IndexMapTest (4 ms total) 30: 30: [----------] 3 tests from IndexGroupsAndNamesTest 30: [ RUN ] IndexGroupsAndNamesTest.containsNames -30: [ OK ] IndexGroupsAndNamesTest.containsNames (1 ms) +30: [ OK ] IndexGroupsAndNamesTest.containsNames (0 ms) 30: [ RUN ] IndexGroupsAndNamesTest.throwsWhenNameMissing 30: [ OK ] IndexGroupsAndNamesTest.throwsWhenNameMissing (0 ms) 30: [ RUN ] IndexGroupsAndNamesTest.groupIndicesCorrect @@ -118502,23 +118510,23 @@ 30: 30: [----------] 15 tests from NeighborhoodSearchTest 30: [ RUN ] NeighborhoodSearchTest.SimpleSearch -30: [ OK ] NeighborhoodSearchTest.SimpleSearch (22 ms) +30: [ OK ] NeighborhoodSearchTest.SimpleSearch (15 ms) 30: [ RUN ] NeighborhoodSearchTest.SimpleSearchXY -30: [ OK ] NeighborhoodSearchTest.SimpleSearchXY (34 ms) +30: [ OK ] NeighborhoodSearchTest.SimpleSearchXY (15 ms) 30: [ RUN ] NeighborhoodSearchTest.GridSearchBox -30: [ OK ] NeighborhoodSearchTest.GridSearchBox (3 ms) +30: [ OK ] NeighborhoodSearchTest.GridSearchBox (2 ms) 30: [ RUN ] NeighborhoodSearchTest.GridSearchTriclinic -30: [ OK ] NeighborhoodSearchTest.GridSearchTriclinic (21 ms) +30: [ OK ] NeighborhoodSearchTest.GridSearchTriclinic (9 ms) 30: [ RUN ] NeighborhoodSearchTest.GridSearch2DPBC -30: [ OK ] NeighborhoodSearchTest.GridSearch2DPBC (9 ms) +30: [ OK ] NeighborhoodSearchTest.GridSearch2DPBC (5 ms) 30: [ RUN ] NeighborhoodSearchTest.GridSearchNoPBC 30: [ OK ] NeighborhoodSearchTest.GridSearchNoPBC (1 ms) 30: [ RUN ] NeighborhoodSearchTest.GridSearchXYBox -30: [ OK ] NeighborhoodSearchTest.GridSearchXYBox (6 ms) +30: [ OK ] NeighborhoodSearchTest.GridSearchXYBox (3 ms) 30: [ RUN ] NeighborhoodSearchTest.SimpleSelfPairsSearch 30: [ OK ] NeighborhoodSearchTest.SimpleSelfPairsSearch (0 ms) 30: [ RUN ] NeighborhoodSearchTest.GridSelfPairsSearch -30: [ OK ] NeighborhoodSearchTest.GridSelfPairsSearch (82 ms) +30: [ OK ] NeighborhoodSearchTest.GridSelfPairsSearch (43 ms) 30: [ RUN ] NeighborhoodSearchTest.HandlesConcurrentSearches 30: [ OK ] NeighborhoodSearchTest.HandlesConcurrentSearches (0 ms) 30: [ RUN ] NeighborhoodSearchTest.HandlesNoPBC @@ -118528,10 +118536,10 @@ 30: [ RUN ] NeighborhoodSearchTest.HandlesSkippingPairs 30: [ OK ] NeighborhoodSearchTest.HandlesSkippingPairs (0 ms) 30: [ RUN ] NeighborhoodSearchTest.SimpleSearchExclusions -30: [ OK ] NeighborhoodSearchTest.SimpleSearchExclusions (7 ms) +30: [ OK ] NeighborhoodSearchTest.SimpleSearchExclusions (5 ms) 30: [ RUN ] NeighborhoodSearchTest.GridSearchExclusions 30: [ OK ] NeighborhoodSearchTest.GridSearchExclusions (1 ms) -30: [----------] 15 tests from NeighborhoodSearchTest (186 ms total) +30: [----------] 15 tests from NeighborhoodSearchTest (100 ms total) 30: 30: [----------] 12 tests from PositionCalculationTest 30: [ RUN ] PositionCalculationTest.ComputesAtomPositions @@ -118545,32 +118553,32 @@ 30: [ RUN ] PositionCalculationTest.ComputesGroupCOMPositions 30: [ OK ] PositionCalculationTest.ComputesGroupCOMPositions (0 ms) 30: [ RUN ] PositionCalculationTest.ComputesPositionsWithCompleteWhole -30: [ OK ] PositionCalculationTest.ComputesPositionsWithCompleteWhole (4 ms) +30: [ OK ] PositionCalculationTest.ComputesPositionsWithCompleteWhole (1 ms) 30: [ RUN ] PositionCalculationTest.ComputesPositionsWithCompleteMax -30: [ OK ] PositionCalculationTest.ComputesPositionsWithCompleteMax (1 ms) +30: [ OK ] PositionCalculationTest.ComputesPositionsWithCompleteMax (0 ms) 30: [ RUN ] PositionCalculationTest.ComputesPositionMask 30: [ OK ] PositionCalculationTest.ComputesPositionMask (0 ms) 30: [ RUN ] PositionCalculationTest.HandlesFramesWithLessAtoms 30: [ OK ] PositionCalculationTest.HandlesFramesWithLessAtoms (0 ms) 30: [ RUN ] PositionCalculationTest.HandlesFramesWithLessAtoms2 -30: [ OK ] PositionCalculationTest.HandlesFramesWithLessAtoms2 (0 ms) +30: [ OK ] PositionCalculationTest.HandlesFramesWithLessAtoms2 (1 ms) 30: [ RUN ] PositionCalculationTest.HandlesIdenticalStaticCalculations 30: [ OK ] PositionCalculationTest.HandlesIdenticalStaticCalculations (0 ms) 30: [ RUN ] PositionCalculationTest.HandlesOverlappingStaticCalculations -30: [ OK ] PositionCalculationTest.HandlesOverlappingStaticCalculations (1 ms) -30: [----------] 12 tests from PositionCalculationTest (7 ms total) +30: [ OK ] PositionCalculationTest.HandlesOverlappingStaticCalculations (0 ms) +30: [----------] 12 tests from PositionCalculationTest (3 ms total) 30: 30: [----------] 29 tests from SelectionCollectionTest 30: [ RUN ] SelectionCollectionTest.HandlesNoSelections 30: [ OK ] SelectionCollectionTest.HandlesNoSelections (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesNoSelectionsWithDefaultPositionType -30: [ OK ] SelectionCollectionTest.HandlesNoSelectionsWithDefaultPositionType (0 ms) +30: [ OK ] SelectionCollectionTest.HandlesNoSelectionsWithDefaultPositionType (1 ms) 30: [ RUN ] SelectionCollectionTest.HandlesVelocityAndForceRequests 30: [ OK ] SelectionCollectionTest.HandlesVelocityAndForceRequests (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesForceRequestForCenterOfGeometry -30: [ OK ] SelectionCollectionTest.HandlesForceRequestForCenterOfGeometry (1 ms) +30: [ OK ] SelectionCollectionTest.HandlesForceRequestForCenterOfGeometry (0 ms) 30: [ RUN ] SelectionCollectionTest.ParsesSelectionsFromFile -30: [ OK ] SelectionCollectionTest.ParsesSelectionsFromFile (0 ms) +30: [ OK ] SelectionCollectionTest.ParsesSelectionsFromFile (2 ms) 30: [ RUN ] SelectionCollectionTest.HandlesAtypicalWhitespace 30: [ OK ] SelectionCollectionTest.HandlesAtypicalWhitespace (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesInvalidRegularExpressions @@ -118580,35 +118588,35 @@ 30: [ RUN ] SelectionCollectionTest.HandlesMissingMethodParamValue2 30: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue2 (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesMissingMethodParamValue3 -30: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue3 (4 ms) +30: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue3 (1 ms) 30: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser1 -30: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser1 (1 ms) +30: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser1 (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser2 30: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser2 (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed1 -30: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed1 (0 ms) +30: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed1 (1 ms) 30: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed2 -30: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed2 (1 ms) +30: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed2 (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesUnsortedGroupReference -30: [ OK ] SelectionCollectionTest.HandlesUnsortedGroupReference (0 ms) +30: [ OK ] SelectionCollectionTest.HandlesUnsortedGroupReference (1 ms) 30: [ RUN ] SelectionCollectionTest.HandlesUnsortedGroupReferenceDelayed -30: [ OK ] SelectionCollectionTest.HandlesUnsortedGroupReferenceDelayed (1 ms) +30: [ OK ] SelectionCollectionTest.HandlesUnsortedGroupReferenceDelayed (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroup 30: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroup (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed -30: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed (0 ms) +30: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed (1 ms) 30: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed2 -30: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed2 (1 ms) +30: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed2 (0 ms) 30: [ RUN ] SelectionCollectionTest.RecoversFromMissingMoleculeInfo 30: [ OK ] SelectionCollectionTest.RecoversFromMissingMoleculeInfo (0 ms) 30: [ RUN ] SelectionCollectionTest.RecoversFromMissingAtomTypes -30: [ OK ] SelectionCollectionTest.RecoversFromMissingAtomTypes (4 ms) +30: [ OK ] SelectionCollectionTest.RecoversFromMissingAtomTypes (1 ms) 30: [ RUN ] SelectionCollectionTest.RecoversFromMissingPDBInfo -30: [ OK ] SelectionCollectionTest.RecoversFromMissingPDBInfo (1 ms) +30: [ OK ] SelectionCollectionTest.RecoversFromMissingPDBInfo (0 ms) 30: [ RUN ] SelectionCollectionTest.RecoversFromInvalidPermutation 30: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation (0 ms) 30: [ RUN ] SelectionCollectionTest.RecoversFromInvalidPermutation2 -30: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation2 (0 ms) +30: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation2 (2 ms) 30: [ RUN ] SelectionCollectionTest.RecoversFromInvalidPermutation3 30: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation3 (1 ms) 30: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets @@ -118616,41 +118624,41 @@ 30: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets2 30: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets2 (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets3 -30: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets3 (1 ms) +30: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets3 (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets4 30: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets4 (0 ms) -30: [----------] 29 tests from SelectionCollectionTest (17 ms total) +30: [----------] 29 tests from SelectionCollectionTest (13 ms total) 30: 30: [----------] 14 tests from SelectionCollectionInteractiveTest 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesBasicInput -30: [ OK ] SelectionCollectionInteractiveTest.HandlesBasicInput (0 ms) +30: [ OK ] SelectionCollectionInteractiveTest.HandlesBasicInput (1 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesContinuation 30: [ OK ] SelectionCollectionInteractiveTest.HandlesContinuation (0 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInput -30: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInput (0 ms) +30: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInput (1 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInput -30: [ OK ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInput (5 ms) +30: [ OK ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInput (0 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesStatusWithGroups -30: [ OK ] SelectionCollectionInteractiveTest.HandlesStatusWithGroups (0 ms) +30: [ OK ] SelectionCollectionInteractiveTest.HandlesStatusWithGroups (1 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesStatusWithExistingSelections -30: [ OK ] SelectionCollectionInteractiveTest.HandlesStatusWithExistingSelections (1 ms) +30: [ OK ] SelectionCollectionInteractiveTest.HandlesStatusWithExistingSelections (0 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputStatus -30: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputStatus (0 ms) +30: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputStatus (1 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInputStatus 30: [ OK ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInputStatus (0 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesMultiSelectionInputStatus 30: [ OK ] SelectionCollectionInteractiveTest.HandlesMultiSelectionInputStatus (1 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesNoFinalNewline -30: [ OK ] SelectionCollectionInteractiveTest.HandlesNoFinalNewline (0 ms) +30: [ OK ] SelectionCollectionInteractiveTest.HandlesNoFinalNewline (1 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesEmptySelections 30: [ OK ] SelectionCollectionInteractiveTest.HandlesEmptySelections (1 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesMultipleSelectionsOnLine 30: [ OK ] SelectionCollectionInteractiveTest.HandlesMultipleSelectionsOnLine (0 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesNoninteractiveInput -30: [ OK ] SelectionCollectionInteractiveTest.HandlesNoninteractiveInput (4 ms) +30: [ OK ] SelectionCollectionInteractiveTest.HandlesNoninteractiveInput (0 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputNoninteractively 30: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputNoninteractively (1 ms) -30: [----------] 14 tests from SelectionCollectionInteractiveTest (14 ms total) +30: [----------] 14 tests from SelectionCollectionInteractiveTest (8 ms total) 30: 30: [----------] 66 tests from SelectionCollectionDataTest 30: [ RUN ] SelectionCollectionDataTest.HandlesAllNone @@ -118658,57 +118666,57 @@ 30: [ RUN ] SelectionCollectionDataTest.HandlesAtomnr 30: [ OK ] SelectionCollectionDataTest.HandlesAtomnr (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesResnr -30: [ OK ] SelectionCollectionDataTest.HandlesResnr (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesResnr (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesResIndex -30: [ OK ] SelectionCollectionDataTest.HandlesResIndex (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesResIndex (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesMolIndex -30: [ OK ] SelectionCollectionDataTest.HandlesMolIndex (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesMolIndex (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesAtomname 30: [ OK ] SelectionCollectionDataTest.HandlesAtomname (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesPdbAtomname 30: [ OK ] SelectionCollectionDataTest.HandlesPdbAtomname (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesAtomtype -30: [ OK ] SelectionCollectionDataTest.HandlesAtomtype (5 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesAtomtype (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesChain 30: [ OK ] SelectionCollectionDataTest.HandlesChain (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesMass -30: [ OK ] SelectionCollectionDataTest.HandlesMass (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesMass (2 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesCharge -30: [ OK ] SelectionCollectionDataTest.HandlesCharge (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesCharge (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesAltLoc -30: [ OK ] SelectionCollectionDataTest.HandlesAltLoc (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesAltLoc (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesInsertCode -30: [ OK ] SelectionCollectionDataTest.HandlesInsertCode (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesInsertCode (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesOccupancy -30: [ OK ] SelectionCollectionDataTest.HandlesOccupancy (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesOccupancy (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesBeta -30: [ OK ] SelectionCollectionDataTest.HandlesBeta (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesBeta (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesResname -30: [ OK ] SelectionCollectionDataTest.HandlesResname (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesResname (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesCoordinateKeywords -30: [ OK ] SelectionCollectionDataTest.HandlesCoordinateKeywords (5 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesCoordinateKeywords (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesSameResidue -30: [ OK ] SelectionCollectionDataTest.HandlesSameResidue (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesSameResidue (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesSameResidueName -30: [ OK ] SelectionCollectionDataTest.HandlesSameResidueName (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesSameResidueName (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesPositionKeywords 30: [ OK ] SelectionCollectionDataTest.HandlesPositionKeywords (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesDistanceKeyword -30: [ OK ] SelectionCollectionDataTest.HandlesDistanceKeyword (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesDistanceKeyword (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesMinDistanceKeyword 30: [ OK ] SelectionCollectionDataTest.HandlesMinDistanceKeyword (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesWithinKeyword -30: [ OK ] SelectionCollectionDataTest.HandlesWithinKeyword (9 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesWithinKeyword (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesInSolidAngleKeyword -30: [ OK ] SelectionCollectionDataTest.HandlesInSolidAngleKeyword (4 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesInSolidAngleKeyword (5 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesPermuteModifier 30: [ OK ] SelectionCollectionDataTest.HandlesPermuteModifier (2 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesPlusModifier -30: [ OK ] SelectionCollectionDataTest.HandlesPlusModifier (6 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesPlusModifier (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesMergeModifier -30: [ OK ] SelectionCollectionDataTest.HandlesMergeModifier (2 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesMergeModifier (3 ms) 30: [ RUN ] SelectionCollectionDataTest.ComputesMassesAndCharges -30: [ OK ] SelectionCollectionDataTest.ComputesMassesAndCharges (1 ms) +30: [ OK ] SelectionCollectionDataTest.ComputesMassesAndCharges (2 ms) 30: [ RUN ] SelectionCollectionDataTest.ComputesMassesAndChargesWithoutTopology 30: [ OK ] SelectionCollectionDataTest.ComputesMassesAndChargesWithoutTopology (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesFramesWithAtomSubsets @@ -118720,9 +118728,9 @@ 30: [ RUN ] SelectionCollectionDataTest.HandlesIndexGroupsInSelectionsDelayed 30: [ OK ] SelectionCollectionDataTest.HandlesIndexGroupsInSelectionsDelayed (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelections -30: [ OK ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelections (5 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelections (2 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelectionsDelayed -30: [ OK ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelectionsDelayed (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelectionsDelayed (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositions 30: [ OK ] SelectionCollectionDataTest.HandlesConstantPositions (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositionsWithModifiers @@ -118730,43 +118738,43 @@ 30: [ RUN ] SelectionCollectionDataTest.HandlesWithinConstantPositions 30: [ OK ] SelectionCollectionDataTest.HandlesWithinConstantPositions (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesOverlappingIntegerRanges -30: [ OK ] SelectionCollectionDataTest.HandlesOverlappingIntegerRanges (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesOverlappingIntegerRanges (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesOverlappingRealRanges -30: [ OK ] SelectionCollectionDataTest.HandlesOverlappingRealRanges (4 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesOverlappingRealRanges (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesForcedStringMatchingMode -30: [ OK ] SelectionCollectionDataTest.HandlesForcedStringMatchingMode (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesForcedStringMatchingMode (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesWildcardMatching -30: [ OK ] SelectionCollectionDataTest.HandlesWildcardMatching (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesWildcardMatching (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesRegexMatching -30: [ OK ] SelectionCollectionDataTest.HandlesRegexMatching (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesRegexMatching (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesBasicBoolean 30: [ OK ] SelectionCollectionDataTest.HandlesBasicBoolean (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesDynamicAtomValuedParameters 30: [ OK ] SelectionCollectionDataTest.HandlesDynamicAtomValuedParameters (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesEmptySelectionWithUnevaluatedExpressions -30: [ OK ] SelectionCollectionDataTest.HandlesEmptySelectionWithUnevaluatedExpressions (8 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesEmptySelectionWithUnevaluatedExpressions (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesEmptyReferenceForSame 30: [ OK ] SelectionCollectionDataTest.HandlesEmptyReferenceForSame (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesPositionModifiersForKeywords 30: [ OK ] SelectionCollectionDataTest.HandlesPositionModifiersForKeywords (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesPositionModifiersForMethods -30: [ OK ] SelectionCollectionDataTest.HandlesPositionModifiersForMethods (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesPositionModifiersForMethods (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesKeywordOfPositions 30: [ OK ] SelectionCollectionDataTest.HandlesKeywordOfPositions (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesKeywordOfPositionsInArithmetic -30: [ OK ] SelectionCollectionDataTest.HandlesKeywordOfPositionsInArithmetic (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesKeywordOfPositionsInArithmetic (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesNumericComparisons -30: [ OK ] SelectionCollectionDataTest.HandlesNumericComparisons (2 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesNumericComparisons (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesArithmeticExpressions 30: [ OK ] SelectionCollectionDataTest.HandlesArithmeticExpressions (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesNumericVariables -30: [ OK ] SelectionCollectionDataTest.HandlesNumericVariables (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesNumericVariables (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesComplexNumericVariables 30: [ OK ] SelectionCollectionDataTest.HandlesComplexNumericVariables (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesPositionVariables -30: [ OK ] SelectionCollectionDataTest.HandlesPositionVariables (5 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesPositionVariables (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesPositionVariableInModifier -30: [ OK ] SelectionCollectionDataTest.HandlesPositionVariableInModifier (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesPositionVariableInModifier (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositionInVariable 30: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionInVariable (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesNumericConstantsInVariables @@ -118774,24 +118782,24 @@ 30: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysis 30: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysis (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithVariables -30: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithVariables (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithVariables (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithMoreVariables -30: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithMoreVariables (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithMoreVariables (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesUnusedVariables -30: [ OK ] SelectionCollectionDataTest.HandlesUnusedVariables (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesUnusedVariables (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithStaticEvaluationGroups -30: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithStaticEvaluationGroups (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithStaticEvaluationGroups (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups -30: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups2 30: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups2 (1 ms) -30: [----------] 66 tests from SelectionCollectionDataTest (102 ms total) +30: [----------] 66 tests from SelectionCollectionDataTest (61 ms total) 30: 30: [----------] 17 tests from SelectionOptionTest 30: [ RUN ] SelectionOptionTest.ParsesSimpleSelection -30: [ OK ] SelectionOptionTest.ParsesSimpleSelection (0 ms) +30: [ OK ] SelectionOptionTest.ParsesSimpleSelection (1 ms) 30: [ RUN ] SelectionOptionTest.HandlesDynamicSelectionWhenStaticRequired -30: [ OK ] SelectionOptionTest.HandlesDynamicSelectionWhenStaticRequired (1 ms) +30: [ OK ] SelectionOptionTest.HandlesDynamicSelectionWhenStaticRequired (0 ms) 30: [ RUN ] SelectionOptionTest.HandlesNonAtomicSelectionWhenAtomsRequired 30: [ OK ] SelectionOptionTest.HandlesNonAtomicSelectionWhenAtomsRequired (0 ms) 30: [ RUN ] SelectionOptionTest.ChecksForSortedAtomsWhenRequired @@ -118813,7 +118821,7 @@ 30: [ RUN ] SelectionOptionTest.HandlesTooManySelectionsWithAdjuster 30: [ OK ] SelectionOptionTest.HandlesTooManySelectionsWithAdjuster (0 ms) 30: [ RUN ] SelectionOptionTest.HandlesTooFewSelectionsWithAdjuster -30: [ OK ] SelectionOptionTest.HandlesTooFewSelectionsWithAdjuster (0 ms) +30: [ OK ] SelectionOptionTest.HandlesTooFewSelectionsWithAdjuster (2 ms) 30: [ RUN ] SelectionOptionTest.HandlesDelayedRequiredSelection 30: [ OK ] SelectionOptionTest.HandlesDelayedRequiredSelection (0 ms) 30: [ RUN ] SelectionOptionTest.HandlesTooFewDelayedRequiredSelections @@ -118821,46 +118829,46 @@ 30: [ RUN ] SelectionOptionTest.HandlesDelayedOptionalSelection 30: [ OK ] SelectionOptionTest.HandlesDelayedOptionalSelection (0 ms) 30: [ RUN ] SelectionOptionTest.HandlesDelayedSelectionWithAdjuster -30: [ OK ] SelectionOptionTest.HandlesDelayedSelectionWithAdjuster (0 ms) -30: [----------] 17 tests from SelectionOptionTest (4 ms total) +30: [ OK ] SelectionOptionTest.HandlesDelayedSelectionWithAdjuster (1 ms) +30: [----------] 17 tests from SelectionOptionTest (6 ms total) 30: 30: [----------] 9 tests from SelectionFileOptionTest 30: [ RUN ] SelectionFileOptionTest.HandlesSingleSelectionOptionFromFile 30: [ OK ] SelectionFileOptionTest.HandlesSingleSelectionOptionFromFile (0 ms) 30: [ RUN ] SelectionFileOptionTest.HandlesTwoSeparateSelectionOptions -30: [ OK ] SelectionFileOptionTest.HandlesTwoSeparateSelectionOptions (1 ms) +30: [ OK ] SelectionFileOptionTest.HandlesTwoSeparateSelectionOptions (0 ms) 30: [ RUN ] SelectionFileOptionTest.HandlesTwoSelectionOptionsFromSingleFile 30: [ OK ] SelectionFileOptionTest.HandlesTwoSelectionOptionsFromSingleFile (0 ms) 30: [ RUN ] SelectionFileOptionTest.HandlesRequiredOptionFromFile -30: [ OK ] SelectionFileOptionTest.HandlesRequiredOptionFromFile (0 ms) +30: [ OK ] SelectionFileOptionTest.HandlesRequiredOptionFromFile (1 ms) 30: [ RUN ] SelectionFileOptionTest.HandlesRequiredOptionFromFileWithOtherOptionSet 30: [ OK ] SelectionFileOptionTest.HandlesRequiredOptionFromFileWithOtherOptionSet (0 ms) 30: [ RUN ] SelectionFileOptionTest.HandlesTwoRequiredOptionsFromSingleFile -30: [ OK ] SelectionFileOptionTest.HandlesTwoRequiredOptionsFromSingleFile (9 ms) +30: [ OK ] SelectionFileOptionTest.HandlesTwoRequiredOptionsFromSingleFile (0 ms) 30: [ RUN ] SelectionFileOptionTest.GivesErrorWithNoFile 30: [ OK ] SelectionFileOptionTest.GivesErrorWithNoFile (0 ms) 30: [ RUN ] SelectionFileOptionTest.GivesErrorWithNonExistentFile -30: [ OK ] SelectionFileOptionTest.GivesErrorWithNonExistentFile (0 ms) +30: [ OK ] SelectionFileOptionTest.GivesErrorWithNonExistentFile (2 ms) 30: [ RUN ] SelectionFileOptionTest.GivesErrorWithMultipleFiles 30: [ OK ] SelectionFileOptionTest.GivesErrorWithMultipleFiles (0 ms) -30: [----------] 9 tests from SelectionFileOptionTest (10 ms total) +30: [----------] 9 tests from SelectionFileOptionTest (3 ms total) 30: 30: [----------] Global test environment tear-down -30: [==========] 192 tests from 11 test cases ran. (352 ms total) +30: [==========] 192 tests from 11 test cases ran. (200 ms total) 30: [ PASSED ] 192 tests. -30/30 Test #30: SelectionUnitTests ............... Passed 0.41 sec +30/30 Test #30: SelectionUnitTests ............... Passed 0.24 sec 100% tests passed, 0 tests failed out of 30 Label Time Summary: -GTest = 5.87 sec*proc (30 tests) -MpiTest = 1.64 sec*proc (3 tests) -UnitTest = 5.87 sec*proc (30 tests) +GTest = 4.53 sec*proc (30 tests) +MpiTest = 0.76 sec*proc (3 tests) +UnitTest = 4.53 sec*proc (30 tests) -Total Test time (real) = 5.91 sec +Total Test time (real) = 4.59 sec touch build-mpich dh_testdir -/usr/bin/make -j16 -C build/openmpi +/usr/bin/make -j15 -C build/openmpi make[1]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' /usr/bin/cmake -S/build/reproducible-path/gromacs-2020.6 -B/build/reproducible-path/gromacs-2020.6/build/openmpi --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/gromacs-2020.6/build/openmpi/CMakeFiles /build/reproducible-path/gromacs-2020.6/build/openmpi//CMakeFiles/progress.marks @@ -118871,69 +118879,63 @@ /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -Scanning dependencies of target scanner -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend Scanning dependencies of target release-version-info +Scanning dependencies of target scanner +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' Scanning dependencies of target lmfit_objlib make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/parser.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/parser.cpp -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build Scanning dependencies of target thread_mpi -cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/openmpi/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/openmpi/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake +Scanning dependencies of target linearalgebra cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/scanner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/scanner.cpp -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/programs /build/reproducible-path/gromacs-2020.6/build/openmpi/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -std=c++14 -o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/lmfit/lmmin.cpp -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build +cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/openmpi/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/openmpi/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' Scanning dependencies of target tng_io_obj make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -std=c++14 -o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/lmfit/lmmin.cpp +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/errhandler.cpp -Scanning dependencies of target linearalgebra -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwlzh.c /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/tmpi_malloc.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwt.c make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/linearalgebra && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/eigensolver.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwt.c cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/atomic.cpp -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/coder.c +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/linearalgebra && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/gmx_arpack.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/coder.c cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/lock.cpp -Scanning dependencies of target mdrun_objlib -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/pthreads.cpp -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/programs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/mdrun.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/programs /build/reproducible-path/gromacs-2020.6/build/openmpi/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= Scanning dependencies of target modularsimulator make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build @@ -118941,25 +118943,30 @@ cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/dict.c make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/checkpointhelper.cpp +Scanning dependencies of target mdrun_objlib +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/programs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/mdrun.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/pthreads.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/fixpoint.c cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 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/build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/matrix.cpp make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' [ 1%] Built target thread_mpi -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/huffmem.c +cd 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-DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/nrjac.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/nrjac.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -g -O2 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/build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/constraintelement.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/domdechelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/domdechelper.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/vals16.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/vals16.c cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/warnmalloc.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/warnmalloc.c cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/widemuldiv.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/widemuldiv.c @@ -118967,18 +118974,19 @@ cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc3.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/xtc3.c cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/lib/tng_io.c cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/energyelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/energyelement.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/lib/md5.c cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/forceelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/forceelement.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/lib/md5.c cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/freeenergyperturbationelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/freeenergyperturbationelement.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/modularsimulator.cpp make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' [ 1%] Built target lmfit_objlib +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/linearalgebra && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/sparsematrix.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/modularsimulator.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/parrinellorahmanbarostat.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/pmeloadbalancehelper.cpp -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 2%] Built target mdrun_objlib cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/propagator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/propagator.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/shellfcelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/shellfcelement.cpp +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +[ 2%] Built target mdrun_objlib cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/signallers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/signallers.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/statepropagatordata.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/topologyholder.cpp @@ -119605,107 +119613,104 @@ make[2]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/gromacs-2020.6/build/openmpi/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -j16 -C build/openmpi-dp +/usr/bin/make -j15 -C build/openmpi-dp make[1]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' /usr/bin/cmake -S/build/reproducible-path/gromacs-2020.6 -B/build/reproducible-path/gromacs-2020.6/build/openmpi-dp --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/CMakeFiles /build/reproducible-path/gromacs-2020.6/build/openmpi-dp//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend -/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend Scanning dependencies of target release-version-info make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/programs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build +Scanning dependencies of target lmfit_objlib +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +Scanning dependencies of target scanner make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake -Scanning dependencies of target scanner +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -Scanning dependencies of target lmfit_objlib +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -std=c++14 -o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/lmfit/lmmin.cpp /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/selection && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/parser.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/parser.cpp -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= +Scanning dependencies of target thread_mpi cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/selection && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/scanner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/scanner.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -std=c++14 -o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/lmfit/lmmin.cpp +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/programs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build Scanning dependencies of target linearalgebra make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -Scanning dependencies of target thread_mpi -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +Scanning dependencies of target tng_io_obj make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/linearalgebra && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/eigensolver.cpp +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/linearalgebra && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/eigensolver.cpp +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/errhandler.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/linearalgebra && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/gmx_arpack.cpp -Scanning dependencies of target mdrun_objlib -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwlzh.c cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/tmpi_malloc.cpp -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/linearalgebra && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/matrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/matrix.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/linearalgebra && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/nrjac.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/nrjac.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/atomic.cpp -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/linearalgebra && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/matrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/matrix.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwt.c cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/lock.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/linearalgebra && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/sparsematrix.cpp -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/programs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/mdrun.cpp -[ 0%] Built target release-version-info -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/programs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/nonbonded_bench.cpp -Scanning dependencies of target tng_io_obj +Scanning dependencies of target mdrun_objlib make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwlzh.c +[ 0%] Built target release-version-info +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/programs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/mdrun.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/pthreads.cpp Scanning dependencies of target modularsimulator make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/checkpointhelper.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/pthreads.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/system_error.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/system_error.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwt.c -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/compositesimulatorelement.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/computeglobalselement.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/linearalgebra && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/nrjac.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/nrjac.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/linearalgebra && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/sparsematrix.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/programs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/nonbonded_bench.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/coder.c -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -[ 1%] Built target thread_mpi -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/constraintelement.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/domdechelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/domdechelper.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/compositesimulatorelement.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/dict.c cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/fixpoint.c -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/energyelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/energyelement.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/huffman.c +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/huffmem.c +[ 1%] Built target thread_mpi +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/computeglobalselement.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/lz77.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/lz77.c cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/merge_sort.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/merge_sort.c cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/mtf.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/mtf.c -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/forceelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/forceelement.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/rle.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/rle.c +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/constraintelement.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/tng_compress.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/tng_compress.c cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/vals16.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/vals16.c cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/warnmalloc.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/warnmalloc.c @@ -119714,16 +119719,19 @@ cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc3.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/xtc3.c cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/lib/tng_io.c cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/lib/md5.c +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/domdechelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/domdechelper.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/energyelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/energyelement.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/forceelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/forceelement.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/freeenergyperturbationelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/freeenergyperturbationelement.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/modularsimulator.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/parrinellorahmanbarostat.cpp make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -[ 1%] Built target lmfit_objlib +[ 2%] Built target mdrun_objlib +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/parrinellorahmanbarostat.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/pmeloadbalancehelper.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/propagator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/propagator.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/shellfcelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/shellfcelement.cpp make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -[ 2%] Built target mdrun_objlib +[ 2%] Built target lmfit_objlib +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/shellfcelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/shellfcelement.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/signallers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/signallers.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/statepropagatordata.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/topologyholder.cpp @@ -120140,13 +120148,13 @@ cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/membed.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/nsgrid.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/perf_est.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/qm_gamess.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/qm_gaussian.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/qm_mopac.cpp /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/forcerec.cpp: In function 'void __static_initialization_and_destruction_0(int, int)': /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/forcerec.cpp:103:16: warning: ignoring return value of 'char* getenv(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 103 | (getenv("GMX_GPU_PME_PP_COMMS") != nullptr) && GMX_THREAD_MPI && (GMX_GPU == GMX_GPU_CUDA); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/qm_gamess.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/qm_gaussian.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/qm_mopac.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/qm_orca.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/qmmm.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/rbin.cpp @@ -120198,12 +120206,12 @@ cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_pp.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_redistribute.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_solve.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_spline_work.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_spread.cpp /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_only.cpp: In function 'void __static_initialization_and_destruction_0(int, int)': /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_only.cpp:104:16: warning: ignoring return value of 'char* getenv(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 104 | (getenv("GMX_GPU_PME_PP_COMMS") != nullptr) && GMX_THREAD_MPI && (GMX_GPU == GMX_GPU_CUDA); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_spline_work.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_spread.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_gpu_program.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_pp_comm_gpu_impl.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -isystem /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/tng/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/lmfit -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/pme_coordinate_receiver_gpu_impl.cpp @@ -120355,7 +120363,7 @@ > debian/gromacs-openmpi.README.Debian # rsh_agent: https://bugs.debian.org/494046 # oversubscribe: https://bugs.debian.org/850229#51 -/usr/bin/make -j16 -C build/openmpi tests +/usr/bin/make -j15 -C build/openmpi tests make[1]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' /usr/bin/cmake -S/build/reproducible-path/gromacs-2020.6 -B/build/reproducible-path/gromacs-2020.6/build/openmpi --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/make -f CMakeFiles/Makefile2 tests @@ -120365,70 +120373,70 @@ /usr/bin/make -f CMakeFiles/Makefile2 CMakeFiles/tests.dir/all make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend -/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -make[4]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build +/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/openmpi/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/openmpi/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake +make[4]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. +/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build +cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/openmpi/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/openmpi/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build -cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 0%] Built target scanner make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[4]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 1%] Built target thread_mpi make[4]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 1%] Built target release-version-info +[ 0%] Built target scanner +[ 0%] Built target release-version-info +[ 1%] Built target thread_mpi [ 1%] Built target lmfit_objlib -[ 3%] Built target tng_io_obj -[ 3%] Built target linearalgebra /usr/bin/make -f src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build.make src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/depend +[ 3%] Built target tng_io_obj make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/external/googletest/googlemock/gtest /build/reproducible-path/gromacs-2020.6/build/openmpi/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/DependInfo.cmake --color= +[ 3%] Built target linearalgebra [ 5%] Built target modularsimulator /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend Scanning dependencies of target gtest @@ -120501,126 +120509,126 @@ [ 76%] Built target testutils /usr/bin/make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend +/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend +/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend +/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend +/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/testutils/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend -/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/testutils/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend -/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/applied_forces/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend +/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/domdec/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= -Scanning dependencies of target testutils-mpi-test -/usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +/usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fft/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fft/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color= -Scanning dependencies of target utility-mpi-test -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/mpitest.cpp +/usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/gpu_utils/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/physicalnodecommunicator_mpi.cpp -Scanning dependencies of target testutils-test +cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/hardware/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/hardware/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend -Scanning dependencies of target onlinehelp-test-shared -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +Scanning dependencies of target testutils-mpi-test +Scanning dependencies of target testutils-test +Scanning dependencies of target utility-mpi-test +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/hardware/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/hardware/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color= -/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/interactivetest.cpp Scanning dependencies of target domdec-test make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/mock_helptopic.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= +/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build +Scanning dependencies of target onlinehelp-test-shared +Scanning dependencies of target selection-test Scanning dependencies of target applied_forces-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/mpitest.cpp make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/domdec/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests/hashedmap.cpp +/usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/indexutil.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/indexutil.cpp +Scanning dependencies of target gpu_utils-test +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' Scanning dependencies of target fft-test +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +/usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/interactivetest.cpp +Scanning dependencies of target hardware-test +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +/usr/bin/make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/physicalnodecommunicator_mpi.cpp +Scanning dependencies of target ewald-test make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/applied_forces/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfitting.cpp +/usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -Scanning dependencies of target gpu_utils-test +/usr/bin/make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build +/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build /usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -Scanning dependencies of target hardware-test -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/mock_helptopic.cpp +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/domdec/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests/hashedmap.cpp /usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fft/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fft/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/fft.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fft/tests/fft.cpp -Scanning dependencies of target selection-test make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fft/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fft/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/fft.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fft/tests/fft.cpp /usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/gputest.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -Scanning dependencies of target ewald-test +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmebsplinetest.cpp make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/hardware/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/hardware/tests/hardwaretopology.cpp -/usr/bin/make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +Scanning dependencies of target mdlib-test Scanning dependencies of target utility-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/indexutil.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/indexutil.cpp -/usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/alignedallocator.cpp make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmebsplinetest.cpp -Scanning dependencies of target mdlib-test -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/calc_verletbuf.cpp Scanning dependencies of target math-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/calc_verletbuf.cpp /usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/arrayrefwithpadding.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/refdata_tests.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/clfftinitializer.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/nbsearch.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/nbsearch.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so ../../../lib/libgtest.a -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/clfftinitializer.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/arrayref.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' [ 77%] Built target testutils-mpi-test /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constr.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constr.cpp make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= Scanning dependencies of target mdrunutility-test-shared @@ -120631,7 +120639,7 @@ cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/gpu_utils/tests/hostallocator.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constr.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constr.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/domdec/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests/localatomsetmanager.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' [ 77%] Built target utility-mpi-test /usr/bin/make -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/depend @@ -120642,10 +120650,7 @@ /usr/bin/make -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdspan/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/accessor_policy.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/domdec/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/domdec/tests/localatomsetmanager.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/testasserts_tests.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/applied_forces/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/applied_forces/tests/densityfittingoptions.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/hardware/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/cmake -P CMakeFiles/onlinehelp-test-shared.dir/cmake_clean_target.cmake cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test-shared.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libonlinehelp-test-shared.a CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o @@ -120660,21 +120665,16 @@ /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/abstractoptionstorage.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/refdata_tests.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/hardware/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/hardware/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fft/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fft/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdspan/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extents.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/extents.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fft/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fft/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/domdec/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmegathertest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' [ 77%] Built target hardware-test -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmesolvetest.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/cmake -P CMakeFiles/mdrunutility-test-shared.dir/cmake_clean_target.cmake -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test-shared.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../../../lib/libmdrunutility-test-shared.a CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -/usr/bin/ranlib ../../../../lib/libmdrunutility-test-shared.a -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 78%] Built target mdrunutility-test-shared /usr/bin/make -f src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build.make src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/pbcutil/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/pbcutil/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/DependInfo.cmake --color= @@ -120683,16 +120683,11 @@ /usr/bin/make -f src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build.make src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/pbcutil/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/pbc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/pbcutil/tests/pbc.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/nbsearch.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/nbsearch.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdspan/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extensions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/extensions.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/pbcutil/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/pbcutil/tests/pbcenums.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/domdec/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/domdec/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/poscalc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/poscalc.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/coordinatetransformation.cpp -[ 78%] Built target fft-test +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/pmegathertest.cpp +[ 77%] Built target fft-test /usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake --color= @@ -120701,8 +120696,12 @@ /usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/exponentialdistribution.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/cmake -P CMakeFiles/mdrunutility-test-shared.dir/cmake_clean_target.cmake +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test-shared.dir/link.txt --verbose=1 +/usr/bin/ar qc ../../../../lib/libmdrunutility-test-shared.a CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o +/usr/bin/ranlib ../../../../lib/libmdrunutility-test-shared.a make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 78%] Built target domdec-test +[ 78%] Built target mdrunutility-test-shared /usr/bin/make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/restraint/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/restraint/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake --color= @@ -120711,78 +120710,79 @@ /usr/bin/make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/restraint/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/restraintpotential-test.dir/manager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/restraint/tests/manager.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/tests/xvgtest_tests.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/pbcutil/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/restraint/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdspan/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/layouts.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/layouts.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/pbcutil/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pbcutil-test.dir/link.txt --verbose=1 -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/pbcutil-test.dir/pbc.cpp.o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pbcutil-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a -/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so ../../../lib/libgtest.a +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/pbcutil/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/pbcutil/tests/pbcenums.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdspan/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extensions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/extensions.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/coordinatetransformation.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 78%] Built target pbcutil-test +[ 78%] Built target domdec-test /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/tables/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/tables/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a Scanning dependencies of target table-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/tables/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/tables/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/tables/tests/splinetable.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdspan/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/mdspan.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdspan/tests/mdspan.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/pbcutil/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/restraint/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/restraint/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectioncollection.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/selectioncollection.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/arrayref.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/pbcutil/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pbcutil-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/pbcutil-test.dir/pbc.cpp.o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pbcutil-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constrtestdata.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/bitmask32.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 78%] Built target restraintpotential-test +[ 78%] Built target pbcutil-test +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectionoption.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/selectionoption.cpp /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/taskassignment/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/taskassignment/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake --color= -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 78%] Built target testutils-test -/usr/bin/make -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/depend Scanning dependencies of target taskassignment-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/topology/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/taskassignment/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/taskassignment/tests/usergpuids.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +[ 78%] Built target restraintpotential-test +/usr/bin/make -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/topology/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/DependInfo.cmake --color= Scanning dependencies of target topology-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' /usr/bin/make -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/topology/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/exclusionblocks.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests/exclusionblocks.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdspan/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdspan/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/constrtestrunners.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/gammadistribution.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/topology/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/mtop.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests/mtop.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/topology/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/symtab.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/topology/tests/symtab.cpp +cd 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-I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/testutils/../external/tinyxml2 -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script 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../../../../lib/libgtest.a -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/filenameoptionmanager.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/testhardwarecontexts.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/applied_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied_forces-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied_forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' [ 79%] Built target taskassignment-test +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so ../../../lib/libgtest.a /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/pulling/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/pulling/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake --color= @@ -120791,30 +120791,30 @@ /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/pulling/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pull-test.dir/pull.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/pulling/tests/pull.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/dofit.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/dofit.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/tabulatednormaldistribution.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 80%] Built target topology-test +[ 79%] Built target testutils-test +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/topology/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/topology/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/awh/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/filenameoptionmanager.cpp Scanning dependencies of target awh-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/awh/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/bias.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests/bias.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/applied_forces/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/bitmask128.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/option.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/option.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/applied_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied_forces-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied_forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +[ 79%] Built target applied_forces-test +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/toputils.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/toputils.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/topology/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/topology-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/topology-test.dir/exclusionblocks.cpp.o CMakeFiles/topology-test.dir/mtop.cpp.o CMakeFiles/topology-test.dir/symtab.cpp.o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/topology-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/exponentialmovingaverage.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/pulling/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/pulling/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/dofit.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/dofit.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/seed.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/seed.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectionoption.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/selectionoption.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 80%] Built target applied_forces-test +[ 80%] Built target topology-test /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake --color= @@ -120823,7 +120823,9 @@ /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/bootstrap_loadstore.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/optionsassigner.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/functions.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/functions.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' [ 81%] Built target pull-test /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend @@ -120834,43 +120836,48 @@ /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/compat/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -Wno-unused-member-function -o CMakeFiles/compat-test.dir/optional.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests/optional.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/tabulatednormaldistribution.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/exponentialmovingaverage.cpp -cd 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/usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 82%] Built target ewald-test +[ 81%] Built target gpu_utils-test /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 Scanning dependencies of target fileio-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/confio.cpp -/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfittingforce.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/densityfittingforce.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/selection-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/selection-test.dir/indexutil.cpp.o CMakeFiles/selection-test.dir/nbsearch.cpp.o CMakeFiles/selection-test.dir/poscalc.cpp.o CMakeFiles/selection-test.dir/selectioncollection.cpp.o CMakeFiles/selection-test.dir/selectionoption.cpp.o CMakeFiles/selection-test.dir/toputils.cpp.o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/selection-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 82%] Built target mdspan-test +[ 81%] Built target table-test /usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake --color= -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp Scanning dependencies of target commandline-test make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' /usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/awh/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests/biasstate.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/defaultinitializationallocator.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/option.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/option.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/invertmatrix.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 82%] Built target table-test +[ 82%] Built target selection-test /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake --color= @@ -120879,13 +120886,25 @@ /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests/threadaffinity_mpi.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o 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/build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/mrcserializer.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settletestdata.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 82%] Built target gpu_utils-test +[ 82%] Built target mdspan-test /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake --color= @@ -120894,22 +120913,16 @@ /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdrunutility/tests/threadaffinity.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/enumerationhelpers.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/filemd5.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/threefry.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/threefry.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/leapfrog.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/awh/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/grid.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/awh/tests/grid.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_floatingpoint.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/mrcserializer.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/fixedcapacityvector.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/gausstransform.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/gausstransform.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/awh/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/paddedvector.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/awh/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/awh/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/compat/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests/pointers.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/uniformrealdistribution.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_floatingpoint_util.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/compat/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/string_view.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests/string_view.cpp [ 82%] Built target mdrunutility-mpi-test /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' @@ -120921,125 +120934,120 @@ cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/helpformat.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/leapfrogtestdata.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/timeunitmanager.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/inmemoryserializer.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settletestrunners.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/ewald/tests/testhardwarecontexts.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp -[ 83%] Built target awh-test -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/helpmanager.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/treesupport.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/mrcdensitymap.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 83%] Built target mdrunutility-test -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +[ 83%] Built target awh-test +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/helpmanager.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/vectypes.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/shake.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/onlinehelp/tests/helpwritercontext.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/toputils.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/tests/toputils.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_floatingpoint_util.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/random/tests/uniformintdistribution.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/compat/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/compat/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/compat/tests/pointers.cpp -cd 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CMakeFiles/mdlib-test.dir/settle.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settle.cpp -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 85%] Built target onlinehelp-test -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/matrix.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/matrix.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_vector_operations.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settletestdata.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_math.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/multidimarray.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/multidimarray.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 86%] Built target random-test -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external 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/build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/math/tests/vectypes.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_memory.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/settletestrunners.cpp +[ 84%] Built target ewald-test +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/mrcdensitymapheader.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/readinp.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +[ 85%] Built target random-test cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/filenm.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/filenm.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat 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/usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG 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-fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/keyvaluetreetransform.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/shake.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/simulationsignal.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/repeatingsection.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 87%] Built target options-test +[ 85%] Built target mdrunutility-test +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/timeunitmanager.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/tests/updategroups.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/logger.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/logger.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/fileioxdrserializer.cpp +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/options/tests/treesupport.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security 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/build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +[ 86%] Built target onlinehelp-test +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd 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/build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include 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-I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_memory.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio/tests/fileioxdrserializer.cpp +cd 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CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat 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-fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd_integer.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/path.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/path.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 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-fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/stringutil.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/filenm.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/filenm.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/fileio-test.dir/confio.cpp.o 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-DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/textreader.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/commandline/tests/pargs.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4_floatingpoint.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/constr.cpp.o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o CMakeFiles/mdlib-test.dir/ebin.cpp.o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o CMakeFiles/mdlib-test.dir/expanded.cpp.o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 88%] Built target fileio-test +[ 87%] Built target fileio-test +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/bitmask32.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4_vector_operations.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/textwriter.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/bitmask64.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/bitmask128.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/cstringutil.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/cstringutil.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/defaultinitializationallocator.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +[ 89%] Built target mdlib-test cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/simd4_math.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/typetraits.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/filenm.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/scalar.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/compat-test.dir/optional.cpp.o CMakeFiles/compat-test.dir/pointers.cpp.o CMakeFiles/compat-test.dir/string_view.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +[ 90%] Built target compat-test cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/scalar_util.cpp -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/simd/tests/scalar_math.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/enumerationhelpers.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/fixedcapacityvector.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/inmemoryserializer.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 89%] Built target compat-test +[ 91%] Built target options-test +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/keyvaluetreeserializer.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o 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/usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/keyvaluetreetransform.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 90%] Built target commandline-test -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 92%] Built target mdlib-test +[ 92%] Built target commandline-test +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/logger.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/logger.cpp +cd 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CMakeFiles/utility-test.dir/mutex.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/mutex.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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/build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/stringutil.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/textreader.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/textwriter.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/utility/tests/typetraits.cpp +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/build/reproducible-path/gromacs-2020.6/build/openmpi/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -isystem /build/reproducible-path/gromacs-2020.6/src/external -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googlemock/include -isystem /build/reproducible-path/gromacs-2020.6/src/external/googletest/googletest/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -msse4.1 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/testutils/unittest_main.cpp cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a +cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 +/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o CMakeFiles/math-test.dir/densityfit.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/gausstransform.cpp.o CMakeFiles/math-test.dir/densityfittingforce.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/matrix.cpp.o CMakeFiles/math-test.dir/multidimarray.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' [ 94%] Built target simd-test +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +[ 96%] Built target math-test cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/utility-test.dir/alignedallocator.cpp.o CMakeFiles/utility-test.dir/arrayref.cpp.o CMakeFiles/utility-test.dir/bitmask32.cpp.o CMakeFiles/utility-test.dir/bitmask64.cpp.o CMakeFiles/utility-test.dir/bitmask128.cpp.o CMakeFiles/utility-test.dir/cstringutil.cpp.o CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o CMakeFiles/utility-test.dir/logger.cpp.o CMakeFiles/utility-test.dir/mutex.cpp.o CMakeFiles/utility-test.dir/path.cpp.o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o CMakeFiles/utility-test.dir/stringutil.cpp.o CMakeFiles/utility-test.dir/textreader.cpp.o CMakeFiles/utility-test.dir/textwriter.cpp.o CMakeFiles/utility-test.dir/typetraits.cpp.o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 97%] Built target utility-test -cd /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 -/usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -L/usr/lib/openmpi/lib -Wl,-z,relro -Wl,-z,now CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o CMakeFiles/math-test.dir/densityfit.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/gausstransform.cpp.o CMakeFiles/math-test.dir/densityfittingforce.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/matrix.cpp.o CMakeFiles/math-test.dir/multidimarray.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libhwloc.so -lrt /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lm /usr/lib/gcc/x86_64-linux-gnu/10/libgomp.so ../../../../lib/libgtest.a -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[100%] Built target math-test +[100%] Built target utility-test /usr/bin/make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/CMakeFiles/tests.dir/DependInfo.cmake --color= @@ -121078,11 +121086,11 @@ 1: [----------] Global test environment set-up. 1: [----------] 10 tests from InteractiveTestHelperTest 1: [ RUN ] InteractiveTestHelperTest.ChecksSimpleSession -1: [ OK ] InteractiveTestHelperTest.ChecksSimpleSession (0 ms) +1: [ OK ] InteractiveTestHelperTest.ChecksSimpleSession (1 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline 1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline (0 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput -1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput (1 ms) +1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput 1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsIncorrectOutput @@ -121101,9 +121109,9 @@ 1: 1: [----------] 34 tests from ReferenceDataTest 1: [ RUN ] ReferenceDataTest.HandlesSimpleData -1: [ OK ] ReferenceDataTest.HandlesSimpleData (1 ms) +1: [ OK ] ReferenceDataTest.HandlesSimpleData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesFloatingPointData -1: [ OK ] ReferenceDataTest.HandlesFloatingPointData (0 ms) +1: [ OK ] ReferenceDataTest.HandlesFloatingPointData (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesPresenceChecks 1: [ OK ] ReferenceDataTest.HandlesPresenceChecks (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesStringBlockData @@ -121111,19 +121119,19 @@ 1: [ RUN ] ReferenceDataTest.HandlesVectorData 1: [ OK ] ReferenceDataTest.HandlesVectorData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceData -1: [ OK ] ReferenceDataTest.HandlesSequenceData (4 ms) +1: [ OK ] ReferenceDataTest.HandlesSequenceData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceOfCustomData -1: [ OK ] ReferenceDataTest.HandlesSequenceOfCustomData (1 ms) +1: [ OK ] ReferenceDataTest.HandlesSequenceOfCustomData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesIncorrectData 1: [ OK ] ReferenceDataTest.HandlesIncorrectData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesIncorrectDataType 1: [ OK ] ReferenceDataTest.HandlesIncorrectDataType (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMissingData -1: [ OK ] ReferenceDataTest.HandlesMissingData (0 ms) +1: [ OK ] ReferenceDataTest.HandlesMissingData (9 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedData 1: [ OK ] ReferenceDataTest.HandlesUncheckedData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedDataInSequence -1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInSequence (1 ms) +1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInSequence (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedDataInCompound 1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInCompound (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesAnys @@ -121135,7 +121143,7 @@ 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeMissingKey 1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeMissingKey (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesAnysWithIncorrectValue -1: [ OK ] ReferenceDataTest.HandlesAnysWithIncorrectValue (1 ms) +1: [ OK ] ReferenceDataTest.HandlesAnysWithIncorrectValue (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesAnysWithIncorrectType 1: [ OK ] ReferenceDataTest.HandlesAnysWithIncorrectType (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMissingReferenceDataFile @@ -121145,7 +121153,7 @@ 1: [ RUN ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace 1: [ OK ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesEmptyStrings -1: [ OK ] ReferenceDataTest.HandlesEmptyStrings (22 ms) +1: [ OK ] ReferenceDataTest.HandlesEmptyStrings (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock 1: [ OK ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceItemIndices @@ -121157,7 +121165,7 @@ 1: [ RUN ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds 1: [ OK ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesReadingValues -1: [ OK ] ReferenceDataTest.HandlesReadingValues (1 ms) +1: [ OK ] ReferenceDataTest.HandlesReadingValues (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges @@ -121167,8 +121175,8 @@ 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries -1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries (1 ms) -1: [----------] 34 tests from ReferenceDataTest (33 ms total) +1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries (0 ms) +1: [----------] 34 tests from ReferenceDataTest (13 ms total) 1: 1: [----------] 7 tests from FloatingPointDifferenceTest 1: [ RUN ] FloatingPointDifferenceTest.HandlesEqualValues @@ -121202,17 +121210,17 @@ 1: [ RUN ] XvgTests.CreateFile 1: [ OK ] XvgTests.CreateFile (0 ms) 1: [ RUN ] XvgTests.CheckMissing -1: [ OK ] XvgTests.CheckMissing (3 ms) +1: [ OK ] XvgTests.CheckMissing (0 ms) 1: [ RUN ] XvgTests.CheckExtra -1: [ OK ] XvgTests.CheckExtra (1 ms) +1: [ OK ] XvgTests.CheckExtra (13 ms) 1: [ RUN ] XvgTests.ReadIncorrect 1: [ OK ] XvgTests.ReadIncorrect (0 ms) -1: [----------] 4 tests from XvgTests (4 ms total) +1: [----------] 4 tests from XvgTests (13 ms total) 1: 1: [----------] Global test environment tear-down -1: [==========] 59 tests from 5 test cases ran. (39 ms total) +1: [==========] 59 tests from 5 test cases ran. (28 ms total) 1: [ PASSED ] 59 tests. - 1/30 Test #1: TestUtilsUnitTests ............... Passed 5.42 sec + 1/30 Test #1: TestUtilsUnitTests ............... Passed 1.23 sec test 2 Start 2: TestUtilsMpiUnitTests @@ -121222,13 +121230,13 @@ 2: [----------] Global test environment set-up. 2: [----------] 1 test from MpiSelfTest 2: [ RUN ] MpiSelfTest.Runs -2: [ OK ] MpiSelfTest.Runs (2 ms) -2: [----------] 1 test from MpiSelfTest (11 ms total) +2: [ OK ] MpiSelfTest.Runs (1 ms) +2: [----------] 1 test from MpiSelfTest (1 ms total) 2: 2: [----------] Global test environment tear-down -2: [==========] 1 test from 1 test case ran. (11 ms total) +2: [==========] 1 test from 1 test case ran. (1 ms total) 2: [ PASSED ] 1 test. - 2/30 Test #2: TestUtilsMpiUnitTests ............ Passed 1.56 sec + 2/30 Test #2: TestUtilsMpiUnitTests ............ Passed 1.45 sec test 3 Start 3: UtilityUnitTests @@ -121253,14 +121261,14 @@ 3: [ RUN ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment 3: [ OK ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment (0 ms) 3: [ RUN ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment -3: [ OK ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment (1 ms) +3: [ OK ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment (0 ms) 3: [ RUN ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment 3: [ OK ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment (0 ms) 3: [ RUN ] AllocatorTest/1.Move 3: [ OK ] AllocatorTest/1.Move (0 ms) 3: [ RUN ] AllocatorTest/1.StatelessAllocatorUsesNoMemory 3: [ OK ] AllocatorTest/1.StatelessAllocatorUsesNoMemory (0 ms) -3: [----------] 5 tests from AllocatorTest/1 (1 ms total) +3: [----------] 5 tests from AllocatorTest/1 (0 ms total) 3: 3: [----------] 5 tests from AllocatorTest/2, where TypeParam = gmx::Allocator 3: [ RUN ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment @@ -121307,9 +121315,9 @@ 3: [ RUN ] AllocatorTest/5.VectorAllocatesAndResizesWithAlignment 3: [ OK ] AllocatorTest/5.VectorAllocatesAndResizesWithAlignment (0 ms) 3: [ RUN ] AllocatorTest/5.VectorAllocatesAndReservesWithAlignment -3: [ OK ] AllocatorTest/5.VectorAllocatesAndReservesWithAlignment (1 ms) +3: [ OK ] AllocatorTest/5.VectorAllocatesAndReservesWithAlignment (0 ms) 3: [ RUN ] AllocatorTest/5.Move -3: [ OK ] AllocatorTest/5.Move (0 ms) +3: [ OK ] AllocatorTest/5.Move (1 ms) 3: [ RUN ] AllocatorTest/5.StatelessAllocatorUsesNoMemory 3: [ OK ] AllocatorTest/5.StatelessAllocatorUsesNoMemory (0 ms) 3: [----------] 5 tests from AllocatorTest/5 (1 ms total) @@ -121317,7 +121325,7 @@ 3: [----------] 1 test from AllocatorUntypedTest 3: [ RUN ] AllocatorUntypedTest.Comparison 3: [ OK ] AllocatorUntypedTest.Comparison (0 ms) -3: [----------] 1 test from AllocatorUntypedTest (0 ms total) +3: [----------] 1 test from AllocatorUntypedTest (4 ms total) 3: 3: [----------] 1 test from EmptyArrayRefTest 3: [ RUN ] EmptyArrayRefTest.IsEmpty @@ -121642,7 +121650,7 @@ 3: [ OK ] ArrayRefTest/14.ConstructFromNonConstVectorWorks (0 ms) 3: [ RUN ] ArrayRefTest/14.ConstructFromStructFieldWithTemplateConstructorWorks 3: [ OK ] ArrayRefTest/14.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -3: [----------] 9 tests from ArrayRefTest/14 (1 ms total) +3: [----------] 9 tests from ArrayRefTest/14 (0 ms total) 3: 3: [----------] 9 tests from ArrayRefTest/15, where TypeParam = gmx::ArrayRef 3: [ RUN ] ArrayRefTest/15.MakeWithAssignmentWorks @@ -121663,7 +121671,7 @@ 3: [ OK ] ArrayRefTest/15.ConstructFromNonConstVectorWorks (0 ms) 3: [ RUN ] ArrayRefTest/15.ConstructFromStructFieldWithTemplateConstructorWorks 3: [ OK ] ArrayRefTest/15.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) -3: [----------] 9 tests from ArrayRefTest/15 (0 ms total) +3: [----------] 9 tests from ArrayRefTest/15 (1 ms total) 3: 3: [----------] 9 tests from ArrayRefTest/16, where TypeParam = gmx::ArrayRef 3: [ RUN ] ArrayRefTest/16.MakeWithAssignmentWorks @@ -121810,29 +121818,29 @@ 3: 3: [----------] 4 tests from KeyValueTreeSerializerTest 3: [ RUN ] KeyValueTreeSerializerTest.EmptyTree -3: [ OK ] KeyValueTreeSerializerTest.EmptyTree (23 ms) +3: [ OK ] KeyValueTreeSerializerTest.EmptyTree (0 ms) 3: [ RUN ] KeyValueTreeSerializerTest.SimpleObject -3: [ OK ] KeyValueTreeSerializerTest.SimpleObject (8 ms) +3: [ OK ] KeyValueTreeSerializerTest.SimpleObject (0 ms) 3: [ RUN ] KeyValueTreeSerializerTest.ObjectWithArrays -3: [ OK ] KeyValueTreeSerializerTest.ObjectWithArrays (8 ms) +3: [ OK ] KeyValueTreeSerializerTest.ObjectWithArrays (0 ms) 3: [ RUN ] KeyValueTreeSerializerTest.ObjectWithObjects -3: [ OK ] KeyValueTreeSerializerTest.ObjectWithObjects (0 ms) -3: [----------] 4 tests from KeyValueTreeSerializerTest (39 ms total) +3: [ OK ] KeyValueTreeSerializerTest.ObjectWithObjects (1 ms) +3: [----------] 4 tests from KeyValueTreeSerializerTest (1 ms total) 3: 3: [----------] 6 tests from TreeValueTransformTest 3: [ RUN ] TreeValueTransformTest.SimpleTransforms -3: [ OK ] TreeValueTransformTest.SimpleTransforms (8 ms) +3: [ OK ] TreeValueTransformTest.SimpleTransforms (0 ms) 3: [ RUN ] TreeValueTransformTest.SimpleTransformsCaseAndDashInsensitive 3: [ OK ] TreeValueTransformTest.SimpleTransformsCaseAndDashInsensitive (0 ms) 3: [ RUN ] TreeValueTransformTest.SimpleTransformsToObject -3: [ OK ] TreeValueTransformTest.SimpleTransformsToObject (2 ms) +3: [ OK ] TreeValueTransformTest.SimpleTransformsToObject (0 ms) 3: [ RUN ] TreeValueTransformTest.ObjectFromString -3: [ OK ] TreeValueTransformTest.ObjectFromString (6 ms) +3: [ OK ] TreeValueTransformTest.ObjectFromString (0 ms) 3: [ RUN ] TreeValueTransformTest.ObjectFromMultipleStrings -3: [ OK ] TreeValueTransformTest.ObjectFromMultipleStrings (1 ms) +3: [ OK ] TreeValueTransformTest.ObjectFromMultipleStrings (0 ms) 3: [ RUN ] TreeValueTransformTest.ScopedTransformRules 3: [ OK ] TreeValueTransformTest.ScopedTransformRules (0 ms) -3: [----------] 6 tests from TreeValueTransformTest (17 ms total) +3: [----------] 6 tests from TreeValueTransformTest (0 ms total) 3: 3: [----------] 1 test from TreeValueTransformErrorTest 3: [ RUN ] TreeValueTransformErrorTest.ConversionError @@ -121847,14 +121855,14 @@ 3: [ RUN ] LoggerTest.LogsToFile 3: [ OK ] LoggerTest.LogsToFile (0 ms) 3: [ RUN ] LoggerTest.LevelFilteringWorks -3: [ OK ] LoggerTest.LevelFilteringWorks (1 ms) +3: [ OK ] LoggerTest.LevelFilteringWorks (0 ms) 3: [ RUN ] LoggerTest.LogsToMultipleStreams -3: [ OK ] LoggerTest.LogsToMultipleStreams (1 ms) +3: [ OK ] LoggerTest.LogsToMultipleStreams (0 ms) 3: [ RUN ] LoggerTest.LogsToMultipleFiles -3: [ OK ] LoggerTest.LogsToMultipleFiles (0 ms) +3: [ OK ] LoggerTest.LogsToMultipleFiles (1 ms) 3: [ RUN ] LoggerTest.LogsToStreamAndFile 3: [ OK ] LoggerTest.LogsToStreamAndFile (0 ms) -3: [----------] 7 tests from LoggerTest (2 ms total) +3: [----------] 7 tests from LoggerTest (1 ms total) 3: 3: [----------] 4 tests from MutexBasicTest 3: [ RUN ] MutexBasicTest.CanBeMade @@ -121862,26 +121870,26 @@ 3: [ RUN ] MutexBasicTest.CanBeLocked 3: [ OK ] MutexBasicTest.CanBeLocked (0 ms) 3: [ RUN ] MutexBasicTest.CanBeTryLocked -3: [ OK ] MutexBasicTest.CanBeTryLocked (1 ms) +3: [ OK ] MutexBasicTest.CanBeTryLocked (0 ms) 3: [ RUN ] MutexBasicTest.CanBeUsedInLockGuard 3: [ OK ] MutexBasicTest.CanBeUsedInLockGuard (0 ms) -3: [----------] 4 tests from MutexBasicTest (1 ms total) +3: [----------] 4 tests from MutexBasicTest (0 ms total) 3: 3: [----------] 3 tests from MutexTaskTest 3: [ RUN ] MutexTaskTest.MutualExclusionWorksWithLock -3: [ OK ] MutexTaskTest.MutualExclusionWorksWithLock (12 ms) +3: [ OK ] MutexTaskTest.MutualExclusionWorksWithLock (13 ms) 3: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread -3: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread (8 ms) +3: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread (0 ms) 3: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread 3: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread (0 ms) -3: [----------] 3 tests from MutexTaskTest (20 ms total) +3: [----------] 3 tests from MutexTaskTest (13 ms total) 3: 3: [----------] 2 tests from PathTest 3: [ RUN ] PathTest.StripSourcePrefixWorks 3: [ OK ] PathTest.StripSourcePrefixWorks (0 ms) 3: [ RUN ] PathTest.SearchOperationsWork -3: [ OK ] PathTest.SearchOperationsWork (1 ms) -3: [----------] 2 tests from PathTest (1 ms total) +3: [ OK ] PathTest.SearchOperationsWork (0 ms) +3: [----------] 2 tests from PathTest (0 ms total) 3: 3: [----------] 2 tests from PhysicalNodeCommunicatorTest 3: [ RUN ] PhysicalNodeCommunicatorTest.CanConstruct @@ -121900,7 +121908,7 @@ 3: [ RUN ] StringUtilityTest.StripString 3: [ OK ] StringUtilityTest.StripString (0 ms) 3: [ RUN ] StringUtilityTest.SplitString -3: [ OK ] StringUtilityTest.SplitString (0 ms) +3: [ OK ] StringUtilityTest.SplitString (1 ms) 3: [ RUN ] StringUtilityTest.SplitDelimitedString 3: [ OK ] StringUtilityTest.SplitDelimitedString (0 ms) 3: [ RUN ] StringUtilityTest.SplitAndTrimDelimitedString @@ -121909,7 +121917,7 @@ 3: [ OK ] StringUtilityTest.CanCompareCaseInsensitive (0 ms) 3: [ RUN ] StringUtilityTest.CanCompareCaseInsensitiveInLength 3: [ OK ] StringUtilityTest.CanCompareCaseInsensitiveInLength (0 ms) -3: [----------] 9 tests from StringUtilityTest (0 ms total) +3: [----------] 9 tests from StringUtilityTest (1 ms total) 3: 3: [----------] 2 tests from FormatStringTest 3: [ RUN ] FormatStringTest.HandlesBasicFormatting @@ -121946,7 +121954,7 @@ 3: [ OK ] ReplaceAllTest.HandlesWordBoundaries (0 ms) 3: [ RUN ] ReplaceAllTest.HandlesPossibleRecursiveMatches 3: [ OK ] ReplaceAllTest.HandlesPossibleRecursiveMatches (0 ms) -3: [----------] 6 tests from ReplaceAllTest (1 ms total) +3: [----------] 6 tests from ReplaceAllTest (0 ms total) 3: 3: [----------] 10 tests from TextLineWrapperTest 3: [ RUN ] TextLineWrapperTest.HandlesEmptyStrings @@ -121964,12 +121972,12 @@ 3: [ RUN ] TextLineWrapperTest.HandlesIndentWithEmptyLines 3: [ OK ] TextLineWrapperTest.HandlesIndentWithEmptyLines (0 ms) 3: [ RUN ] TextLineWrapperTest.HandlesHangingIndent -3: [ OK ] TextLineWrapperTest.HandlesHangingIndent (3 ms) +3: [ OK ] TextLineWrapperTest.HandlesHangingIndent (0 ms) 3: [ RUN ] TextLineWrapperTest.HandlesContinuationCharacter 3: [ OK ] TextLineWrapperTest.HandlesContinuationCharacter (0 ms) 3: [ RUN ] TextLineWrapperTest.WrapsCorrectlyWithExtraWhitespace 3: [ OK ] TextLineWrapperTest.WrapsCorrectlyWithExtraWhitespace (0 ms) -3: [----------] 10 tests from TextLineWrapperTest (3 ms total) +3: [----------] 10 tests from TextLineWrapperTest (0 ms total) 3: 3: [----------] 6 tests from TextWriterTest 3: [ RUN ] TextWriterTest.WritesLines @@ -121981,7 +121989,7 @@ 3: [ RUN ] TextWriterTest.WritesLinesInPartsWithWrapper 3: [ OK ] TextWriterTest.WritesLinesInPartsWithWrapper (0 ms) 3: [ RUN ] TextWriterTest.TracksNewlines -3: [ OK ] TextWriterTest.TracksNewlines (0 ms) +3: [ OK ] TextWriterTest.TracksNewlines (1 ms) 3: [ RUN ] TextWriterTest.PreservesTrailingWhitespace 3: [ OK ] TextWriterTest.PreservesTrailingWhitespace (0 ms) 3: [----------] 6 tests from TextWriterTest (1 ms total) @@ -122062,34 +122070,34 @@ 3: 3: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 -3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 (11 ms) +3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 (6 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 -3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 (7 ms) +3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 (16 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 -3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 (4 ms) +3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 (0 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 -3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 (9 ms) +3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 (0 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 -3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 (16 ms) +3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 (0 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 -3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 (17 ms) +3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 (0 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/0 3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/0 (0 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/1 3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/1 (0 ms) 3: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2 3: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2 (0 ms) -3: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest (64 ms total) +3: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest (22 ms total) 3: 3: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest 3: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/0 -3: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/0 (0 ms) +3: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/0 (1 ms) 3: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/1 3: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/1 (0 ms) 3: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/2 3: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/2 (0 ms) 3: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/3 -3: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/3 (1 ms) +3: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/3 (0 ms) 3: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/4 3: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/4 (0 ms) 3: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/5 @@ -122099,9 +122107,9 @@ 3: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest (1 ms total) 3: 3: [----------] Global test environment tear-down -3: [==========] 347 tests from 56 test cases ran. (161 ms total) +3: [==========] 347 tests from 56 test cases ran. (47 ms total) 3: [ PASSED ] 347 tests. - 3/30 Test #3: UtilityUnitTests ................. Passed 1.43 sec + 3/30 Test #3: UtilityUnitTests ................. Passed 1.30 sec test 4 Start 4: UtilityMpiUnitTests @@ -122111,15 +122119,15 @@ 4: [----------] Global test environment set-up. 4: [----------] 2 tests from PhysicalNodeCommunicatorTest 4: [ RUN ] PhysicalNodeCommunicatorTest.CanConstruct -4: [ OK ] PhysicalNodeCommunicatorTest.CanConstruct (16 ms) +4: [ OK ] PhysicalNodeCommunicatorTest.CanConstruct (2 ms) 4: [ RUN ] PhysicalNodeCommunicatorTest.CanCallBarrier -4: [ OK ] PhysicalNodeCommunicatorTest.CanCallBarrier (11 ms) -4: [----------] 2 tests from PhysicalNodeCommunicatorTest (28 ms total) +4: [ OK ] PhysicalNodeCommunicatorTest.CanCallBarrier (1 ms) +4: [----------] 2 tests from PhysicalNodeCommunicatorTest (4 ms total) 4: 4: [----------] Global test environment tear-down -4: [==========] 2 tests from 1 test case ran. (28 ms total) +4: [==========] 2 tests from 1 test case ran. (4 ms total) 4: [ PASSED ] 2 tests. - 4/30 Test #4: UtilityMpiUnitTests .............. Passed 1.53 sec + 4/30 Test #4: UtilityMpiUnitTests .............. Passed 1.69 sec test 5 Start 5: MdlibUnitTest @@ -122134,10 +122142,10 @@ 5: 5: [----------] 2 tests from PrEbinTest 5: [ RUN ] PrEbinTest.HandlesAverages -5: [ OK ] PrEbinTest.HandlesAverages (22 ms) +5: [ OK ] PrEbinTest.HandlesAverages (0 ms) 5: [ RUN ] PrEbinTest.HandlesEmptyAverages -5: [ OK ] PrEbinTest.HandlesEmptyAverages (12 ms) -5: [----------] 2 tests from PrEbinTest (34 ms total) +5: [ OK ] PrEbinTest.HandlesEmptyAverages (0 ms) +5: [----------] 2 tests from PrEbinTest (0 ms total) 5: 5: [----------] 4 tests from ShakeTest 5: [ RUN ] ShakeTest.ConstrainsOneBond @@ -122174,7 +122182,7 @@ 5: 5: [----------] 9 tests from UpdateGroups 5: [ RUN ] UpdateGroups.ethaneUA -5: [ OK ] UpdateGroups.ethaneUA (0 ms) +5: [ OK ] UpdateGroups.ethaneUA (1 ms) 5: [ RUN ] UpdateGroups.methane 5: [ OK ] UpdateGroups.methane (0 ms) 5: [ RUN ] UpdateGroups.ethane @@ -122191,12 +122199,12 @@ 5: [ OK ] UpdateGroups.waterFlexAngle (0 ms) 5: [ RUN ] UpdateGroups.twoMoltypes 5: [ OK ] UpdateGroups.twoMoltypes (0 ms) -5: [----------] 9 tests from UpdateGroups (0 ms total) +5: [----------] 9 tests from UpdateGroups (1 ms total) 5: 5: [----------] 1 test from UpdateGroupsCog 5: [ RUN ] UpdateGroupsCog.ComputesCogs -5: [ OK ] UpdateGroupsCog.ComputesCogs (12 ms) -5: [----------] 1 test from UpdateGroupsCog (12 ms total) +5: [ OK ] UpdateGroupsCog.ComputesCogs (0 ms) +5: [----------] 1 test from UpdateGroupsCog (0 ms total) 5: 5: [----------] 84 tests from WithParameters/ConstraintsTest 5: [ RUN ] WithParameters/ConstraintsTest.SingleConstraint/0 @@ -122220,11 +122228,11 @@ 5: [ RUN ] WithParameters/ConstraintsTest.TwoDisjointConstraints/5 5: [ OK ] WithParameters/ConstraintsTest.TwoDisjointConstraints/5 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TwoDisjointConstraints/6 -5: [ OK ] WithParameters/ConstraintsTest.TwoDisjointConstraints/6 (1 ms) +5: [ OK ] WithParameters/ConstraintsTest.TwoDisjointConstraints/6 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TwoDisjointConstraints/7 -5: [ OK ] WithParameters/ConstraintsTest.TwoDisjointConstraints/7 (0 ms) +5: [ OK ] WithParameters/ConstraintsTest.TwoDisjointConstraints/7 (1 ms) 5: [ RUN ] WithParameters/ConstraintsTest.ThreeSequentialConstraints/0 -5: [ OK ] WithParameters/ConstraintsTest.ThreeSequentialConstraints/0 (0 ms) +5: [ OK ] WithParameters/ConstraintsTest.ThreeSequentialConstraints/0 (13 ms) 5: [ RUN ] WithParameters/ConstraintsTest.ThreeSequentialConstraints/1 5: [ OK ] WithParameters/ConstraintsTest.ThreeSequentialConstraints/1 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.ThreeSequentialConstraints/2 @@ -122340,7 +122348,7 @@ 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/9 5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/9 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/10 -5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/10 (1 ms) +5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/10 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/11 5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/11 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/12 @@ -122366,47 +122374,47 @@ 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/22 5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/22 (0 ms) 5: [ RUN ] WithParameters/ConstraintsTest.TriangleOfConstraints/23 -5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/23 (0 ms) -5: [----------] 84 tests from WithParameters/ConstraintsTest (3 ms total) +5: [ OK ] WithParameters/ConstraintsTest.TriangleOfConstraints/23 (1 ms) +5: [----------] 84 tests from WithParameters/ConstraintsTest (16 ms total) 5: 5: [----------] 11 tests from WithParameters/EnergyOutputTest 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/0 5: Opened /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_0.edr as single precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/0 (25 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/0 (1 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/1 5: Opened /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_1.edr as single precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/1 (20 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/1 (1 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/2 5: Opened /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_2.edr as single precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/2 (16 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/2 (2 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/3 -5: [ OK ] WithParameters/EnergyOutputTest.CheckOutput/3 (2 ms) +5: [ OK ] WithParameters/EnergyOutputTest.CheckOutput/3 (0 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/4 5: Opened /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_4.edr as single precision energy file -5: Reading energy frame 0 time 10.100 Reading energy frame 1 time 27.500 Reading energy frame 2 time 44.900 Reading energy frame 3 time 62.300 Reading energy frame 4 time 79.700 Reading energy frame 5 time 97.100 Reading energy frame 6 time 114.500 Reading energy frame 7 time 131.900 Reading energy frame 8 time 149.300 Reading energy frame 9 time 166.700 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/4 (60 ms) +5: Reading energy frame 0 time 10.100 Reading energy frame 1 time 27.500 Reading energy frame 2 time 44.900 Reading energy frame 3 time 62.300 Reading energy frame 4 time 79.700 Reading energy frame 5 time 97.100 Reading energy frame 6 time 114.500 Reading energy frame 7 time 131.900 Reading energy frame 8 time 149.300 Reading energy frame 9 time 166.700 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/4 (43 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/5 5: Opened /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_5.edr as single precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/5 (20 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/5 (10 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/6 5: Opened /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_6.edr as single precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/6 (7 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/6 (1 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/7 5: Opened /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_7.edr as single precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/7 (20 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/7 (10 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/8 5: Opened /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_8.edr as single precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/8 (19 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/8 (1 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/9 5: Opened /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_9.edr as single precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/9 (15 ms) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/9 (9 ms) 5: [ RUN ] WithParameters/EnergyOutputTest.CheckOutput/10 5: Opened /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary/WithParameters_EnergyOutputTest_CheckOutput_10.edr as single precision energy file -5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/10 (20 ms) -5: [----------] 11 tests from WithParameters/EnergyOutputTest (231 ms total) +5: Reading energy frame 0 time 10.100 [ OK ] WithParameters/EnergyOutputTest.CheckOutput/10 (1 ms) +5: [----------] 11 tests from WithParameters/EnergyOutputTest (83 ms total) 5: 5: [----------] 24 tests from SimpleTests/CalculateAcceptanceWeightSimple 5: [ RUN ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/0 -5: [ OK ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/0 (0 ms) +5: [ OK ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/0 (1 ms) 5: [ RUN ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/1 5: [ OK ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/1 (0 ms) 5: [ RUN ] SimpleTests/CalculateAcceptanceWeightSimple.UnknownCalculationModeThrows/2 @@ -122434,7 +122442,7 @@ 5: [ RUN ] SimpleTests/CalculateAcceptanceWeightSimple.KnownCalculationModeDoesNotThrow/5 5: [ OK ] SimpleTests/CalculateAcceptanceWeightSimple.KnownCalculationModeDoesNotThrow/5 (0 ms) 5: [ RUN ] SimpleTests/CalculateAcceptanceWeightSimple.KnownCalculationModeDoesNotThrow/6 -5: [ OK ] SimpleTests/CalculateAcceptanceWeightSimple.KnownCalculationModeDoesNotThrow/6 (5 ms) +5: [ OK ] SimpleTests/CalculateAcceptanceWeightSimple.KnownCalculationModeDoesNotThrow/6 (0 ms) 5: [ RUN ] SimpleTests/CalculateAcceptanceWeightSimple.KnownCalculationModeDoesNotThrow/7 5: [ OK ] SimpleTests/CalculateAcceptanceWeightSimple.KnownCalculationModeDoesNotThrow/7 (0 ms) 5: [ RUN ] SimpleTests/CalculateAcceptanceWeightSimple.BarkerAndMinVarAreIdentical/0 @@ -122453,7 +122461,7 @@ 5: [ OK ] SimpleTests/CalculateAcceptanceWeightSimple.BarkerAndMinVarAreIdentical/6 (0 ms) 5: [ RUN ] SimpleTests/CalculateAcceptanceWeightSimple.BarkerAndMinVarAreIdentical/7 5: [ OK ] SimpleTests/CalculateAcceptanceWeightSimple.BarkerAndMinVarAreIdentical/7 (0 ms) -5: [----------] 24 tests from SimpleTests/CalculateAcceptanceWeightSimple (5 ms total) +5: [----------] 24 tests from SimpleTests/CalculateAcceptanceWeightSimple (1 ms total) 5: 5: [----------] 14 tests from RegressionTests/CalculateAcceptanceWeightRangeRegression 5: [ RUN ] RegressionTests/CalculateAcceptanceWeightRangeRegression.ValuesMatch/0 @@ -122484,7 +122492,7 @@ 5: [ OK ] RegressionTests/CalculateAcceptanceWeightRangeRegression.ValuesMatch/12 (0 ms) 5: [ RUN ] RegressionTests/CalculateAcceptanceWeightRangeRegression.ValuesMatch/13 5: [ OK ] RegressionTests/CalculateAcceptanceWeightRangeRegression.ValuesMatch/13 (0 ms) -5: [----------] 14 tests from RegressionTests/CalculateAcceptanceWeightRangeRegression (1 ms total) +5: [----------] 14 tests from RegressionTests/CalculateAcceptanceWeightRangeRegression (0 ms total) 5: 5: [----------] 16 tests from WithParameters/LeapFrogTest 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/0 @@ -122494,32 +122502,32 @@ 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/2 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/2 (0 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/3 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/3 (8 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/3 (0 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/4 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/4 (4 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/4 (1 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/5 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/5 (2 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/5 (1 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/6 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/6 (31 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/6 (13 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/7 5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/7 (0 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/8 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/8 (10 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/8 (1 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/9 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/9 (1 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/9 (0 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/10 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/10 (20 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/10 (5 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/11 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/11 (24 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/11 (2 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/12 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/12 (15 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/12 (1 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/13 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/13 (8 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/13 (6 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/14 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/14 (11 ms) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/14 (1 ms) 5: [ RUN ] WithParameters/LeapFrogTest.SimpleIntegration/15 -5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/15 (20 ms) -5: [----------] 16 tests from WithParameters/LeapFrogTest (157 ms total) +5: [ OK ] WithParameters/LeapFrogTest.SimpleIntegration/15 (5 ms) +5: [----------] 16 tests from WithParameters/LeapFrogTest (45 ms total) 5: 5: [----------] 13 tests from WithParameters/SettleTest 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/0 @@ -122527,33 +122535,33 @@ 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/1 5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/1 (0 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/2 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/2 (0 ms) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/2 (1 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/3 5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/3 (0 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/4 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/4 (1 ms) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/4 (0 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/5 5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/5 (0 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/6 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/6 (5 ms) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/6 (1 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/7 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/7 (1 ms) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/7 (0 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/8 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/8 (12 ms) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/8 (1 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/9 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/9 (0 ms) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/9 (5 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/10 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/10 (2 ms) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/10 (0 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/11 -5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/11 (5 ms) +5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/11 (1 ms) 5: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/12 5: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/12 (1 ms) -5: [----------] 13 tests from WithParameters/SettleTest (28 ms total) +5: [----------] 13 tests from WithParameters/SettleTest (10 ms total) 5: 5: [----------] Global test environment tear-down -5: [==========] 187 tests from 13 test cases ran. (472 ms total) +5: [==========] 187 tests from 13 test cases ran. (156 ms total) 5: [ PASSED ] 187 tests. - 5/30 Test #5: MdlibUnitTest .................... Passed 1.67 sec + 5/30 Test #5: MdlibUnitTest .................... Passed 1.60 sec test 6 Start 6: AppliedForcesUnitTest @@ -122565,14 +122573,14 @@ 6: [ RUN ] DensityFittingTest.ForceProviderLackingInputThrows 6: [ OK ] DensityFittingTest.ForceProviderLackingInputThrows (0 ms) 6: [ RUN ] DensityFittingTest.SingleAtom -6: [ OK ] DensityFittingTest.SingleAtom (42 ms) -6: [----------] 2 tests from DensityFittingTest (42 ms total) +6: [ OK ] DensityFittingTest.SingleAtom (1 ms) +6: [----------] 2 tests from DensityFittingTest (1 ms total) 6: 6: [----------] 8 tests from DensityFittingOptionsTest 6: [ RUN ] DensityFittingOptionsTest.DefaultParameters 6: [ OK ] DensityFittingOptionsTest.DefaultParameters (0 ms) 6: [ RUN ] DensityFittingOptionsTest.OptionSetsActive -6: [ OK ] DensityFittingOptionsTest.OptionSetsActive (1 ms) +6: [ OK ] DensityFittingOptionsTest.OptionSetsActive (0 ms) 6: [ RUN ] DensityFittingOptionsTest.OutputNoDefaultValuesWhenInactive 6: [ OK ] DensityFittingOptionsTest.OutputNoDefaultValuesWhenInactive (0 ms) 6: [ RUN ] DensityFittingOptionsTest.OutputDefaultValuesWhenActive @@ -122585,7 +122593,7 @@ 6: [ OK ] DensityFittingOptionsTest.KvtToInternal (0 ms) 6: [ RUN ] DensityFittingOptionsTest.RoundTripForInternalsIsIdempotent 6: [ OK ] DensityFittingOptionsTest.RoundTripForInternalsIsIdempotent (0 ms) -6: [----------] 8 tests from DensityFittingOptionsTest (1 ms total) +6: [----------] 8 tests from DensityFittingOptionsTest (0 ms total) 6: 6: [----------] 7 tests from DensityFittingAmplitudeLookupTest 6: [ RUN ] DensityFittingAmplitudeLookupTest.Unity @@ -122606,17 +122614,17 @@ 6: 6: [----------] 3 tests from ElectricFieldTest 6: [ RUN ] ElectricFieldTest.Static -6: [ OK ] ElectricFieldTest.Static (5 ms) +6: [ OK ] ElectricFieldTest.Static (0 ms) 6: [ RUN ] ElectricFieldTest.Oscillating -6: [ OK ] ElectricFieldTest.Oscillating (1 ms) +6: [ OK ] ElectricFieldTest.Oscillating (0 ms) 6: [ RUN ] ElectricFieldTest.Pulsed 6: [ OK ] ElectricFieldTest.Pulsed (0 ms) -6: [----------] 3 tests from ElectricFieldTest (6 ms total) +6: [----------] 3 tests from ElectricFieldTest (0 ms total) 6: 6: [----------] Global test environment tear-down -6: [==========] 20 tests from 4 test cases ran. (49 ms total) +6: [==========] 20 tests from 4 test cases ran. (1 ms total) 6: [ PASSED ] 20 tests. - 6/30 Test #6: AppliedForcesUnitTest ............ Passed 1.25 sec + 6/30 Test #6: AppliedForcesUnitTest ............ Passed 1.28 sec test 7 Start 7: CommandLineUnitTests @@ -122626,29 +122634,29 @@ 7: [----------] Global test environment set-up. 7: [----------] 3 tests from CommandLineHelpModuleTest 7: [ RUN ] CommandLineHelpModuleTest.PrintsGeneralHelp -7: [ OK ] CommandLineHelpModuleTest.PrintsGeneralHelp (12 ms) +7: [ OK ] CommandLineHelpModuleTest.PrintsGeneralHelp (1 ms) 7: [ RUN ] CommandLineHelpModuleTest.PrintsHelpOnTopic -7: [ OK ] CommandLineHelpModuleTest.PrintsHelpOnTopic (1 ms) +7: [ OK ] CommandLineHelpModuleTest.PrintsHelpOnTopic (0 ms) 7: [ RUN ] CommandLineHelpModuleTest.ExportsHelp -7: [ OK ] CommandLineHelpModuleTest.ExportsHelp (8 ms) -7: [----------] 3 tests from CommandLineHelpModuleTest (21 ms total) +7: [ OK ] CommandLineHelpModuleTest.ExportsHelp (0 ms) +7: [----------] 3 tests from CommandLineHelpModuleTest (1 ms total) 7: 7: [----------] 7 tests from CommandLineHelpWriterTest 7: [ RUN ] CommandLineHelpWriterTest.HandlesOptionTypes -7: [ OK ] CommandLineHelpWriterTest.HandlesOptionTypes (0 ms) +7: [ OK ] CommandLineHelpWriterTest.HandlesOptionTypes (1 ms) 7: [ RUN ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables -7: [ OK ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables (1 ms) +7: [ OK ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables (0 ms) 7: [ RUN ] CommandLineHelpWriterTest.HandlesLongFileOptions 7: [ OK ] CommandLineHelpWriterTest.HandlesLongFileOptions (0 ms) 7: [ RUN ] CommandLineHelpWriterTest.HandlesLongOptions 7: [ OK ] CommandLineHelpWriterTest.HandlesLongOptions (0 ms) 7: [ RUN ] CommandLineHelpWriterTest.HandlesOptionGroups -7: [ OK ] CommandLineHelpWriterTest.HandlesOptionGroups (5 ms) +7: [ OK ] CommandLineHelpWriterTest.HandlesOptionGroups (0 ms) 7: [ RUN ] CommandLineHelpWriterTest.HandlesHelpText -7: [ OK ] CommandLineHelpWriterTest.HandlesHelpText (6 ms) +7: [ OK ] CommandLineHelpWriterTest.HandlesHelpText (0 ms) 7: [ RUN ] CommandLineHelpWriterTest.HandlesKnownIssues -7: [ OK ] CommandLineHelpWriterTest.HandlesKnownIssues (1 ms) -7: [----------] 7 tests from CommandLineHelpWriterTest (14 ms total) +7: [ OK ] CommandLineHelpWriterTest.HandlesKnownIssues (0 ms) +7: [----------] 7 tests from CommandLineHelpWriterTest (1 ms total) 7: 7: [----------] 6 tests from CommandLineModuleManagerTest 7: [ RUN ] CommandLineModuleManagerTest.RunsModule @@ -122656,14 +122664,14 @@ 7: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelp 7: [ OK ] CommandLineModuleManagerTest.RunsModuleHelp (0 ms) 7: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet -7: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet (0 ms) +7: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet (1 ms) 7: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH 7: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH (0 ms) 7: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule 7: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule (0 ms) 7: [ RUN ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames 7: [ OK ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames (0 ms) -7: [----------] 6 tests from CommandLineModuleManagerTest (0 ms total) +7: [----------] 6 tests from CommandLineModuleManagerTest (1 ms total) 7: 7: [----------] 13 tests from CommandLineParserTest 7: [ RUN ] CommandLineParserTest.HandlesSingleValues @@ -122692,7 +122700,7 @@ 7: [ OK ] CommandLineParserTest.CanAllowPositionalArguments (0 ms) 7: [ RUN ] CommandLineParserTest.CannotHavePositionalArgumentsAfterOptions 7: [ OK ] CommandLineParserTest.CannotHavePositionalArgumentsAfterOptions (0 ms) -7: [----------] 13 tests from CommandLineParserTest (1 ms total) +7: [----------] 13 tests from CommandLineParserTest (0 ms total) 7: 7: [----------] 6 tests from CommandLineProgramContextTest 7: [ RUN ] CommandLineProgramContextTest.FindsBinaryWithAbsolutePath @@ -122732,7 +122740,7 @@ 7: [ RUN ] ParseCommonArgsTest.ParsesVectorArgs 7: [ OK ] ParseCommonArgsTest.ParsesVectorArgs (1 ms) 7: [ RUN ] ParseCommonArgsTest.ParsesTimeArgs -7: [ OK ] ParseCommonArgsTest.ParsesTimeArgs (0 ms) +7: [ OK ] ParseCommonArgsTest.ParsesTimeArgs (4 ms) 7: [ RUN ] ParseCommonArgsTest.ParsesTimeArgsWithTimeUnit 7: [ OK ] ParseCommonArgsTest.ParsesTimeArgsWithTimeUnit (0 ms) 7: [ RUN ] ParseCommonArgsTest.ParsesEnumArgs @@ -122742,7 +122750,7 @@ 7: [ RUN ] ParseCommonArgsTest.ParsesFileArgsWithDefaults 7: [ OK ] ParseCommonArgsTest.ParsesFileArgsWithDefaults (0 ms) 7: [ RUN ] ParseCommonArgsTest.ParsesFileArgsWithDefaultFileName -7: [ OK ] ParseCommonArgsTest.ParsesFileArgsWithDefaultFileName (0 ms) +7: [ OK ] ParseCommonArgsTest.ParsesFileArgsWithDefaultFileName (1 ms) 7: [ RUN ] ParseCommonArgsTest.ParseFileArgsWithCustomDefaultExtension 7: [ OK ] ParseCommonArgsTest.ParseFileArgsWithCustomDefaultExtension (0 ms) 7: [ RUN ] ParseCommonArgsTest.HandlesNonExistentInputFiles @@ -122754,19 +122762,19 @@ 7: [ RUN ] ParseCommonArgsTest.HandlesCompressedFiles 7: [ OK ] ParseCommonArgsTest.HandlesCompressedFiles (0 ms) 7: [ RUN ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension -7: [ OK ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension (0 ms) +7: [ OK ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension (1 ms) 7: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFile -7: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFile (1 ms) +7: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFile (0 ms) 7: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName 7: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName (0 ms) 7: [ RUN ] ParseCommonArgsTest.CanKeepUnknownArgs 7: [ OK ] ParseCommonArgsTest.CanKeepUnknownArgs (0 ms) -7: [----------] 21 tests from ParseCommonArgsTest (2 ms total) +7: [----------] 21 tests from ParseCommonArgsTest (7 ms total) 7: 7: [----------] Global test environment tear-down -7: [==========] 59 tests from 7 test cases ran. (38 ms total) +7: [==========] 59 tests from 7 test cases ran. (10 ms total) 7: [ PASSED ] 59 tests. - 7/30 Test #7: CommandLineUnitTests ............. Passed 1.18 sec + 7/30 Test #7: CommandLineUnitTests ............. Passed 1.29 sec test 8 Start 8: DomDecTests @@ -122801,7 +122809,7 @@ 8: [----------] Global test environment tear-down 8: [==========] 9 tests from 2 test cases ran. (0 ms total) 8: [ PASSED ] 9 tests. - 8/30 Test #8: DomDecTests ...................... Passed 1.20 sec + 8/30 Test #8: DomDecTests ...................... Passed 1.25 sec test 9 Start 9: EwaldUnitTests @@ -122811,221 +122819,221 @@ 9: [----------] Global test environment set-up. 9: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest 9: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0 -9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0 (1 ms) +9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0 (0 ms) 9: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/1 9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/1 (0 ms) 9: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 (0 ms) 9: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 -9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 (482 ms) +9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 (8 ms) 9: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 9: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 (0 ms) -9: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest (483 ms total) +9: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest (8 ms total) 9: 9: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 (27 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 (6 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 (8 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 (20 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 (10 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 (8 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 (20 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 (12 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 (24 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 (3 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 (7 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 (3 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 (8 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 (5 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 (3 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 (13 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 (1 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 (48 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 (15 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 (1 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 (11 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 (10 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 (8 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 (5 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 (8 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 (1 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 (11 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 (6 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 (12 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 (11 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 (6 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 (16 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 (8 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 (11 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 (12 ms) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 (2 ms) 9: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 -9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 (8 ms) -9: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest (314 ms total) +9: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 (4 ms) +9: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest (119 ms total) 9: 9: [----------] 144 tests from SaneInput/PmeGatherTest 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/0 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/0 (16 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/0 (9 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/1 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/1 (8 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/1 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/2 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/2 (4 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/2 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/3 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/3 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/3 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/4 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/4 (7 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/4 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/5 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/5 (4 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/5 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/6 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/6 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/7 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/7 (5 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/7 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/8 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/8 (7 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/8 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/9 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/9 (4 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/9 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/10 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/10 (12 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/10 (8 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/11 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/11 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/11 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/12 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/12 (8 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/12 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/13 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/13 (8 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/13 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/14 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/14 (8 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/14 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/15 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/15 (8 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/15 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/16 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/16 (4 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/16 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/17 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/17 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/17 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/18 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/18 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/18 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/19 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/19 (7 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/19 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/20 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/20 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/20 (9 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/21 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/21 (8 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/21 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/22 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/22 (8 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/22 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/23 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/23 (4 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/23 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/24 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/24 (20 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/24 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/25 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/25 (8 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/25 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/26 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/26 (8 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/26 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/27 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/27 (8 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/27 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/28 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/28 (8 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/28 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/29 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/29 (8 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/29 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/30 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/30 (8 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/30 (13 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/31 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/31 (16 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/31 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/32 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/32 (8 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/32 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/33 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/33 (8 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/33 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/34 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/34 (8 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/34 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/35 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/35 (4 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/35 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/36 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/36 (8 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/36 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/37 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/37 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/37 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/38 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/38 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/38 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/39 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/39 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/40 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/40 (3 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/40 (9 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/41 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/41 (4 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/41 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/42 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/42 (8 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/42 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/43 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/43 (4 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/43 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/44 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/44 (4 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/44 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/45 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/45 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/46 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/46 (8 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/46 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/47 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/47 (4 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/47 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/48 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/48 (12 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/48 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/49 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/49 (4 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/49 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/50 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/50 (8 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/50 (9 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/51 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/51 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/52 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/52 (8 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/52 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/53 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/53 (8 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/53 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/54 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/54 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/54 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/55 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/55 (8 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/55 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/56 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/56 (7 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/56 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/57 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/57 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/57 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/58 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/58 (5 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/58 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/59 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/59 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/60 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/60 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/60 (13 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/61 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/61 (7 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/61 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/62 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/62 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/62 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/63 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/63 (7 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/63 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/64 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/64 (8 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/64 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/65 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/65 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/65 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/66 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/66 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/67 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/67 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/67 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/68 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/68 (7 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/68 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/69 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/69 (8 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/69 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/70 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/70 (8 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/70 (9 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/71 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/71 (8 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/71 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/72 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/72 (8 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/72 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/73 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/73 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/74 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/74 (8 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/74 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/75 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/75 (8 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/75 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/76 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/76 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/77 @@ -123033,59 +123041,59 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/78 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/78 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/79 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/79 (7 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/79 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/80 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/80 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/80 (9 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/81 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/81 (8 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/81 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/82 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/82 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/82 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/83 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/83 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/83 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/84 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/84 (7 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/84 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/85 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/85 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/85 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/86 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/86 (8 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/86 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/87 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/87 (8 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/87 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/88 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/88 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/88 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/89 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/89 (8 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/89 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/90 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/90 (8 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/90 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/91 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/91 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/91 (5 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/92 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/92 (8 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/92 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/93 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/93 (8 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/93 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/94 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/94 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/95 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/95 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/95 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/96 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/96 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/97 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/97 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/98 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/98 (6 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/98 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/99 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/99 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/99 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/100 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/100 (8 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/100 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/101 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/101 (8 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/101 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/102 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/102 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/102 (8 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/103 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/103 (8 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/103 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/104 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/104 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/105 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/105 (8 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/105 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/106 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/106 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/107 @@ -123093,159 +123101,159 @@ 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/108 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/108 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/109 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/109 (27 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/109 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/110 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/110 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/111 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/111 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/111 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/112 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/112 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/112 (5 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/113 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/113 (7 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/113 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/114 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/114 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/114 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/115 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/115 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/115 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/116 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/116 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/117 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/117 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/117 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/118 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/118 (7 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/118 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/119 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/119 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/119 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/120 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/120 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/120 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/121 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/121 (7 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/121 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/122 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/122 (8 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/122 (5 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/123 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/123 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/123 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/124 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/124 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/124 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/125 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/125 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/126 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/126 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/127 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/127 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/127 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/128 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/128 (6 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/128 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/129 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/129 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/130 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/130 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/130 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/131 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/131 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/132 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/132 (7 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/132 (8 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/133 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/133 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/133 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/134 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/134 (1 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/134 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/135 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/135 (7 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/135 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/136 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/136 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/136 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/137 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/137 (8 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/137 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/138 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/138 (8 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/138 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/139 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/139 (0 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/139 (1 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/140 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/140 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/141 9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/141 (0 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/142 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/142 (7 ms) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/142 (5 ms) 9: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/143 -9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/143 (0 ms) -9: [----------] 144 tests from SaneInput/PmeGatherTest (648 ms total) +9: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/143 (1 ms) +9: [----------] 144 tests from SaneInput/PmeGatherTest (170 ms total) 9: 9: [----------] 16 tests from SaneInput/PmeSolveTest 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/0 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/0 (2 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/0 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/1 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/1 (7 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/1 (10 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/2 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/2 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/3 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/3 (6 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/3 (2 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/4 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/4 (10 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/4 (3 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/5 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/5 (7 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/5 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/6 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/6 (1 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/6 (9 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/7 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/7 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/8 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/8 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/9 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/9 (2 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/9 (6 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/10 9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/10 (1 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/11 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/11 (9 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/11 (2 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/12 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/12 (1 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/12 (5 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/13 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/13 (8 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/13 (2 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/14 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/14 (7 ms) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/14 (0 ms) 9: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/15 -9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/15 (2 ms) -9: [----------] 16 tests from SaneInput/PmeSolveTest (66 ms total) +9: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/15 (10 ms) +9: [----------] 16 tests from SaneInput/PmeSolveTest (55 ms total) 9: 9: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 -9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 (0 ms) +9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 (1 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 -9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 (6 ms) +9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 (1 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 -9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 (0 ms) +9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 (1 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 -9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 (1 ms) +9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 (11 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 (1 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 (1 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 -9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 (5 ms) +9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 (1 ms) 9: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 9: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 (1 ms) -9: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest (15 ms total) +9: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest (18 ms total) 9: 9: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 -9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 (8 ms) +9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 (1 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 -9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 (8 ms) +9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 (10 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 (1 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 (6 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 -9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 (1 ms) +9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 (2 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 -9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 (8 ms) +9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 (1 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 -9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 (1 ms) +9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 (6 ms) 9: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 -9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 (7 ms) -9: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest (40 ms total) +9: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 (1 ms) +9: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest (28 ms total) 9: 9: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 (7 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 (2 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 (10 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 (10 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 (6 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 @@ -123253,110 +123261,110 @@ 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 (2 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 (10 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 (10 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 (7 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 (2 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 (9 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 -9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 (1 ms) +9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 (3 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 (1 ms) 9: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 9: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 (9 ms) -9: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest (68 ms total) +9: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest (50 ms total) 9: 9: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 (8 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 (2 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 (10 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 (7 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 (5 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 (2 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 (11 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 (7 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 (2 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 (8 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 (5 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 (2 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 (6 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 (1 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 (2 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 (7 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 (1 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 -9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 (8 ms) +9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 (2 ms) 9: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 9: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 (2 ms) -9: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest (66 ms total) +9: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest (38 ms total) 9: 9: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 (6 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 (1 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 (1 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 (6 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 (7 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 (2 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 (8 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 (4 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 (8 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 (2 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 (9 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 (2 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 (1 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 (2 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 (1 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 (16 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 (2 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 (9 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 (2 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 (8 ms) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 (2 ms) 9: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 -9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 (8 ms) -9: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest (83 ms total) +9: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 (2 ms) +9: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest (30 ms total) 9: 9: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 (8 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 (3 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 (15 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 (3 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 (13 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 (9 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 (24 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 (5 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 (25 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 (6 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 (24 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 (10 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 (15 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 (3 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 (7 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 (6 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 (21 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 (4 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 (16 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 (5 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 (24 ms) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 (6 ms) 9: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 -9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 (17 ms) -9: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest (233 ms total) +9: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 (8 ms) +9: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest (74 ms total) 9: 9: [----------] Global test environment tear-down -9: [==========] 257 tests from 10 test cases ran. (2187 ms total) +9: [==========] 257 tests from 10 test cases ran. (747 ms total) 9: [ PASSED ] 257 tests. - 9/30 Test #9: EwaldUnitTests ................... Passed 3.60 sec + 9/30 Test #9: EwaldUnitTests ................... Passed 2.10 sec test 10 Start 10: FFTUnitTests @@ -123366,48 +123374,48 @@ 10: [----------] Global test environment set-up. 10: [----------] 2 tests from ManyFFTTest 10: [ RUN ] ManyFFTTest.Complex1DLength48Multi5Test -10: [ OK ] ManyFFTTest.Complex1DLength48Multi5Test (72 ms) +10: [ OK ] ManyFFTTest.Complex1DLength48Multi5Test (32 ms) 10: [ RUN ] ManyFFTTest.Real1DLength48Multi5Test -10: [ OK ] ManyFFTTest.Real1DLength48Multi5Test (141 ms) -10: [----------] 2 tests from ManyFFTTest (214 ms total) +10: [ OK ] ManyFFTTest.Real1DLength48Multi5Test (107 ms) +10: [----------] 2 tests from ManyFFTTest (152 ms total) 10: 10: [----------] 1 test from FFTTest 10: [ RUN ] FFTTest.Real2DLength18_15Test -10: [ OK ] FFTTest.Real2DLength18_15Test (29 ms) -10: [----------] 1 test from FFTTest (29 ms total) +10: [ OK ] FFTTest.Real2DLength18_15Test (25 ms) +10: [----------] 1 test from FFTTest (25 ms total) 10: 10: [----------] 1 test from FFFTest3D 10: [ RUN ] FFFTest3D.Real5_6_9 -10: [ OK ] FFFTest3D.Real5_6_9 (19 ms) -10: [----------] 1 test from FFFTest3D (19 ms total) +10: [ OK ] FFFTest3D.Real5_6_9 (2 ms) +10: [----------] 1 test from FFFTest3D (2 ms total) 10: 10: [----------] 10 tests from 7_8_25_36_60/FFTTest1D 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/0 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/0 (1 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/0 (10 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/1 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/1 (5 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/1 (1 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/2 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/2 (2 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/2 (1 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/3 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/3 (27 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/3 (34 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/4 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/4 (14 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/4 (2 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/0 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/0 (1 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/0 (14 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/1 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/1 (7 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/1 (0 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/2 10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/2 (1 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/3 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/3 (67 ms) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/3 (42 ms) 10: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/4 -10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/4 (113 ms) -10: [----------] 10 tests from 7_8_25_36_60/FFTTest1D (239 ms total) +10: [ OK ] 7_8_25_36_60/FFTTest1D.Real/4 (56 ms) +10: [----------] 10 tests from 7_8_25_36_60/FFTTest1D (161 ms total) 10: 10: [----------] Global test environment tear-down -10: [==========] 14 tests from 4 test cases ran. (501 ms total) +10: [==========] 14 tests from 4 test cases ran. (340 ms total) 10: [ PASSED ] 14 tests. -10/30 Test #10: FFTUnitTests ..................... Passed 1.82 sec +10/30 Test #10: FFTUnitTests ..................... Passed 1.72 sec test 11 Start 11: GpuUtilsUnitTests @@ -123527,7 +123535,7 @@ 11: [ OK ] HostAllocatorTestNoMem/3.Swap (0 ms) 11: [ RUN ] HostAllocatorTestNoMem/3.Comparison 11: [ OK ] HostAllocatorTestNoMem/3.Comparison (0 ms) -11: [----------] 5 tests from HostAllocatorTestNoMem/3 (0 ms total) +11: [----------] 5 tests from HostAllocatorTestNoMem/3 (1 ms total) 11: 11: [----------] 2 tests from HostAllocatorTestNoMemCopyable/0, where TypeParam = int 11: [ RUN ] HostAllocatorTestNoMemCopyable/0.CopyAssignment @@ -123602,7 +123610,7 @@ 11: [----------] Global test environment tear-down 11: [==========] 62 tests from 20 test cases ran. (1 ms total) 11: [ PASSED ] 62 tests. -11/30 Test #11: GpuUtilsUnitTests ................ Passed 1.14 sec +11/30 Test #11: GpuUtilsUnitTests ................ Passed 1.41 sec test 12 Start 12: HardwareUnitTests @@ -123612,19 +123620,19 @@ 12: [----------] Global test environment set-up. 12: [----------] 4 tests from HardwareTopologyTest 12: [ RUN ] HardwareTopologyTest.Execute -12: [ OK ] HardwareTopologyTest.Execute (98 ms) +12: [ OK ] HardwareTopologyTest.Execute (77 ms) 12: [ RUN ] HardwareTopologyTest.HwlocExecute -12: [ OK ] HardwareTopologyTest.HwlocExecute (103 ms) +12: [ OK ] HardwareTopologyTest.HwlocExecute (97 ms) 12: [ RUN ] HardwareTopologyTest.ProcessorSelfconsistency -12: [ OK ] HardwareTopologyTest.ProcessorSelfconsistency (94 ms) +12: [ OK ] HardwareTopologyTest.ProcessorSelfconsistency (121 ms) 12: [ RUN ] HardwareTopologyTest.NumaCacheSelfconsistency -12: [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (100 ms) -12: [----------] 4 tests from HardwareTopologyTest (411 ms total) +12: [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (103 ms) +12: [----------] 4 tests from HardwareTopologyTest (408 ms total) 12: 12: [----------] Global test environment tear-down -12: [==========] 4 tests from 1 test case ran. (411 ms total) +12: [==========] 4 tests from 1 test case ran. (408 ms total) 12: [ PASSED ] 4 tests. -12/30 Test #12: HardwareUnitTests ................ Passed 1.60 sec +12/30 Test #12: HardwareUnitTests ................ Passed 1.54 sec test 13 Start 13: MathUnitTests @@ -123654,7 +123662,7 @@ 13: [ OK ] ArrayRefWithPaddingTest/1.AssignFromPaddedVectorWorks (0 ms) 13: [ RUN ] ArrayRefWithPaddingTest/1.ConstructFromPointersWorks 13: [ OK ] ArrayRefWithPaddingTest/1.ConstructFromPointersWorks (0 ms) -13: [----------] 2 tests from ArrayRefWithPaddingTest/1 (0 ms total) +13: [----------] 2 tests from ArrayRefWithPaddingTest/1 (1 ms total) 13: 13: [----------] 2 tests from ArrayRefWithPaddingTest/2, where TypeParam = gmx::ArrayRefWithPadding 13: [ RUN ] ArrayRefWithPaddingTest/2.AssignFromPaddedVectorWorks @@ -123677,10 +123685,10 @@ 13: [ RUN ] TranslateAndScaleTest.scalingNonTrivial 13: [ OK ] TranslateAndScaleTest.scalingNonTrivial (0 ms) 13: [ RUN ] TranslateAndScaleTest.scalingInverseNoZero -13: [ OK ] TranslateAndScaleTest.scalingInverseNoZero (1 ms) +13: [ OK ] TranslateAndScaleTest.scalingInverseNoZero (0 ms) 13: [ RUN ] TranslateAndScaleTest.scalingInverseWithOneScaleDimensionZero 13: [ OK ] TranslateAndScaleTest.scalingInverseWithOneScaleDimensionZero (0 ms) -13: [----------] 8 tests from TranslateAndScaleTest (1 ms total) +13: [----------] 8 tests from TranslateAndScaleTest (0 ms total) 13: 13: [----------] 12 tests from DensitySimilarityTest 13: [ RUN ] DensitySimilarityTest.InnerProductIsCorrect @@ -123698,16 +123706,16 @@ 13: [ RUN ] DensitySimilarityTest.RelativeEntropyIsCorrect 13: [ OK ] DensitySimilarityTest.RelativeEntropyIsCorrect (0 ms) 13: [ RUN ] DensitySimilarityTest.RelativeEntropyGradientIsCorrect -13: [ OK ] DensitySimilarityTest.RelativeEntropyGradientIsCorrect (21 ms) +13: [ OK ] DensitySimilarityTest.RelativeEntropyGradientIsCorrect (0 ms) 13: [ RUN ] DensitySimilarityTest.CrossCorrelationIsOne -13: [ OK ] DensitySimilarityTest.CrossCorrelationIsOne (81 ms) +13: [ OK ] DensitySimilarityTest.CrossCorrelationIsOne (83 ms) 13: [ RUN ] DensitySimilarityTest.CrossCorrelationIsMinusOneWhenAntiCorrelated -13: [ OK ] DensitySimilarityTest.CrossCorrelationIsMinusOneWhenAntiCorrelated (93 ms) +13: [ OK ] DensitySimilarityTest.CrossCorrelationIsMinusOneWhenAntiCorrelated (85 ms) 13: [ RUN ] DensitySimilarityTest.CrossCorrelationGradientIsZeroWhenCorrelated -13: [ OK ] DensitySimilarityTest.CrossCorrelationGradientIsZeroWhenCorrelated (62 ms) +13: [ OK ] DensitySimilarityTest.CrossCorrelationGradientIsZeroWhenCorrelated (52 ms) 13: [ RUN ] DensitySimilarityTest.CrossCorrelationGradientIsCorrect -13: [ OK ] DensitySimilarityTest.CrossCorrelationGradientIsCorrect (25 ms) -13: [----------] 12 tests from DensitySimilarityTest (282 ms total) +13: [ OK ] DensitySimilarityTest.CrossCorrelationGradientIsCorrect (0 ms) +13: [----------] 12 tests from DensitySimilarityTest (220 ms total) 13: 13: [----------] 6 tests from StructureSimilarityTest 13: [ RUN ] StructureSimilarityTest.StructureComparedToSelfHasZeroRMSD @@ -123745,29 +123753,29 @@ 13: 13: [----------] 21 tests from FunctionTest 13: [ RUN ] FunctionTest.StaticLog2 -13: [ OK ] FunctionTest.StaticLog2 (7 ms) +13: [ OK ] FunctionTest.StaticLog2 (0 ms) 13: [ RUN ] FunctionTest.Log2I32Bit -13: [ OK ] FunctionTest.Log2I32Bit (4 ms) +13: [ OK ] FunctionTest.Log2I32Bit (0 ms) 13: [ RUN ] FunctionTest.Log2I64Bit -13: [ OK ] FunctionTest.Log2I64Bit (20 ms) +13: [ OK ] FunctionTest.Log2I64Bit (1 ms) 13: [ RUN ] FunctionTest.GreatestCommonDivisor 13: [ OK ] FunctionTest.GreatestCommonDivisor (0 ms) 13: [ RUN ] FunctionTest.InvsqrtFloat 13: [ OK ] FunctionTest.InvsqrtFloat (0 ms) 13: [ RUN ] FunctionTest.InvsqrtDouble -13: [ OK ] FunctionTest.InvsqrtDouble (7 ms) +13: [ OK ] FunctionTest.InvsqrtDouble (0 ms) 13: [ RUN ] FunctionTest.InvsqrtInteger -13: [ OK ] FunctionTest.InvsqrtInteger (1 ms) +13: [ OK ] FunctionTest.InvsqrtInteger (0 ms) 13: [ RUN ] FunctionTest.InvcbrtFloat 13: [ OK ] FunctionTest.InvcbrtFloat (0 ms) 13: [ RUN ] FunctionTest.InvcbrtDouble 13: [ OK ] FunctionTest.InvcbrtDouble (0 ms) 13: [ RUN ] FunctionTest.InvcbrtInteger -13: [ OK ] FunctionTest.InvcbrtInteger (7 ms) +13: [ OK ] FunctionTest.InvcbrtInteger (0 ms) 13: [ RUN ] FunctionTest.SixthrootFloat -13: [ OK ] FunctionTest.SixthrootFloat (1 ms) +13: [ OK ] FunctionTest.SixthrootFloat (0 ms) 13: [ RUN ] FunctionTest.SixthrootDouble -13: [ OK ] FunctionTest.SixthrootDouble (1 ms) +13: [ OK ] FunctionTest.SixthrootDouble (0 ms) 13: [ RUN ] FunctionTest.SixthrootInteger 13: [ OK ] FunctionTest.SixthrootInteger (0 ms) 13: [ RUN ] FunctionTest.InvsixthrootFloat @@ -123779,14 +123787,14 @@ 13: [ RUN ] FunctionTest.Powers 13: [ OK ] FunctionTest.Powers (0 ms) 13: [ RUN ] FunctionTest.ErfInvFloat -13: [ OK ] FunctionTest.ErfInvFloat (1 ms) +13: [ OK ] FunctionTest.ErfInvFloat (0 ms) 13: [ RUN ] FunctionTest.ErfInvDouble -13: [ OK ] FunctionTest.ErfInvDouble (5 ms) +13: [ OK ] FunctionTest.ErfInvDouble (0 ms) 13: [ RUN ] FunctionTest.ErfAndErfInvAreInversesFloat 13: [ OK ] FunctionTest.ErfAndErfInvAreInversesFloat (1 ms) 13: [ RUN ] FunctionTest.ErfAndErfInvAreInversesDouble 13: [ OK ] FunctionTest.ErfAndErfInvAreInversesDouble (0 ms) -13: [----------] 21 tests from FunctionTest (56 ms total) +13: [----------] 21 tests from FunctionTest (2 ms total) 13: 13: [----------] 4 tests from GaussianOn1DLattice 13: [ RUN ] GaussianOn1DLattice.sumsCloseToOne @@ -123927,7 +123935,7 @@ 13: [ OK ] MultiDimArrayTest.constViewConstBegin (0 ms) 13: [ RUN ] MultiDimArrayTest.constViewConstEnd 13: [ OK ] MultiDimArrayTest.constViewConstEnd (0 ms) -13: [----------] 25 tests from MultiDimArrayTest (1 ms total) +13: [----------] 25 tests from MultiDimArrayTest (0 ms total) 13: 13: [----------] 4 tests from MultiDimArrayToMdSpanTest 13: [ RUN ] MultiDimArrayToMdSpanTest.convertsToMdSpan @@ -123960,7 +123968,7 @@ 13: [ OK ] PaddedVectorTest/1.CanMoveAssign (0 ms) 13: [ RUN ] PaddedVectorTest/1.CanSwap 13: [ OK ] PaddedVectorTest/1.CanSwap (0 ms) -13: [----------] 4 tests from PaddedVectorTest/1 (0 ms total) +13: [----------] 4 tests from PaddedVectorTest/1 (1 ms total) 13: 13: [----------] 4 tests from PaddedVectorTest/2, where TypeParam = std::allocator 13: [ RUN ] PaddedVectorTest/2.ConstructsResizesAndReserves @@ -123971,7 +123979,7 @@ 13: [ OK ] PaddedVectorTest/2.CanMoveAssign (0 ms) 13: [ RUN ] PaddedVectorTest/2.CanSwap 13: [ OK ] PaddedVectorTest/2.CanSwap (0 ms) -13: [----------] 4 tests from PaddedVectorTest/2 (0 ms total) +13: [----------] 4 tests from PaddedVectorTest/2 (8 ms total) 13: 13: [----------] 4 tests from PaddedVectorTest/3, where TypeParam = std::allocator > 13: [ RUN ] PaddedVectorTest/3.ConstructsResizesAndReserves @@ -124128,9 +124136,9 @@ 13: [----------] 37 tests from RVecTest (0 ms total) 13: 13: [----------] Global test environment tear-down -13: [==========] 204 tests from 29 test cases ran. (341 ms total) +13: [==========] 204 tests from 29 test cases ran. (232 ms total) 13: [ PASSED ] 204 tests. -13/30 Test #13: MathUnitTests .................... Passed 1.52 sec +13/30 Test #13: MathUnitTests .................... Passed 1.38 sec test 14 Start 14: MdrunUtilityUnitTests @@ -124146,7 +124154,7 @@ 14: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads 14: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads (0 ms) 14: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads -14: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads (0 ms) +14: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads (1 ms) 14: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads 14: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads (0 ms) 14: [ RUN ] ThreadAffinityTest.DoesNothingWithUnknownHardware @@ -124154,7 +124162,7 @@ 14: [ RUN ] ThreadAffinityTest.DoesNothingWithTooManyThreads 14: [ OK ] ThreadAffinityTest.DoesNothingWithTooManyThreads (0 ms) 14: [ RUN ] ThreadAffinityTest.DoesNothingWithTooLargeOffset -14: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeOffset (1 ms) +14: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeOffset (0 ms) 14: [ RUN ] ThreadAffinityTest.DoesNothingWithTooLargeStride 14: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeStride (0 ms) 14: [ RUN ] ThreadAffinityTest.PinsSingleThreadWithAuto @@ -124167,20 +124175,20 @@ 14: NOTE: Affinity setting failed. 14: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread (0 ms) 14: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithAuto -14: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithAuto (18 ms) +14: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithAuto (6 ms) 14: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced -14: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced (0 ms) +14: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced (4 ms) 14: [ RUN ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads -14: [ OK ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads (0 ms) +14: [ OK ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads (16 ms) 14: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing 14: NOTE: Affinity setting for 1/2 threads failed. -14: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing (1 ms) -14: [----------] 17 tests from ThreadAffinityTest (21 ms total) +14: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing (16 ms) +14: [----------] 17 tests from ThreadAffinityTest (44 ms total) 14: 14: [----------] Global test environment tear-down -14: [==========] 17 tests from 1 test case ran. (21 ms total) +14: [==========] 17 tests from 1 test case ran. (44 ms total) 14: [ PASSED ] 17 tests. -14/30 Test #14: MdrunUtilityUnitTests ............ Passed 1.19 sec +14/30 Test #14: MdrunUtilityUnitTests ............ Passed 1.37 sec test 15 Start 15: MdrunUtilityMpiUnitTests @@ -124190,40 +124198,40 @@ 15: [----------] Global test environment set-up. 15: [----------] 6 tests from ThreadAffinityMultiRankTest 15: [ RUN ] ThreadAffinityMultiRankTest.PinsWholeNode -15: [ OK ] ThreadAffinityMultiRankTest.PinsWholeNode (44 ms) +15: [ OK ] ThreadAffinityMultiRankTest.PinsWholeNode (3 ms) 15: [ RUN ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride -15: [ OK ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride (20 ms) +15: [ OK ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride (2 ms) 15: [ RUN ] ThreadAffinityMultiRankTest.PinsTwoNodes -15: [ OK ] ThreadAffinityMultiRankTest.PinsTwoNodes (13 ms) +15: [ OK ] ThreadAffinityMultiRankTest.PinsTwoNodes (1 ms) 15: [ RUN ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled -15: [ OK ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled (17 ms) +15: [ OK ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled (1 ms) 15: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto 15: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto (1 ms) 15: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce -15: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce (6 ms) -15: [----------] 6 tests from ThreadAffinityMultiRankTest (121 ms total) +15: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce (1 ms) +15: [----------] 6 tests from ThreadAffinityMultiRankTest (10 ms total) 15: 15: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly (4 ms) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly (1 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly (8 ms) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly (1 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster (0 ms) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster (1 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly (0 ms) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly (1 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly 15: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly (1 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly (13 ms) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly (1 ms) 15: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly -15: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly (1 ms) -15: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest (52 ms total) +15: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly (2 ms) +15: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest (15 ms total) 15: 15: [----------] Global test environment tear-down -15: [==========] 13 tests from 2 test cases ran. (173 ms total) +15: [==========] 13 tests from 2 test cases ran. (25 ms total) 15: [ PASSED ] 13 tests. -15/30 Test #15: MdrunUtilityMpiUnitTests ......... Passed 1.60 sec +15/30 Test #15: MdrunUtilityMpiUnitTests ......... Passed 1.52 sec test 16 Start 16: MDSpanTests @@ -124319,7 +124327,7 @@ 16: [----------] Global test environment tear-down 16: [==========] 32 tests from 7 test cases ran. (0 ms total) 16: [ PASSED ] 32 tests. -16/30 Test #16: MDSpanTests ...................... Passed 1.29 sec +16/30 Test #16: MDSpanTests ...................... Passed 1.11 sec test 17 Start 17: OnlineHelpUnitTests @@ -124329,40 +124337,40 @@ 17: [----------] Global test environment set-up. 17: [----------] 6 tests from TextTableFormatterTest 17: [ RUN ] TextTableFormatterTest.HandlesBasicCase -17: [ OK ] TextTableFormatterTest.HandlesBasicCase (3 ms) +17: [ OK ] TextTableFormatterTest.HandlesBasicCase (0 ms) 17: [ RUN ] TextTableFormatterTest.HandlesEmptyColumnTitles -17: [ OK ] TextTableFormatterTest.HandlesEmptyColumnTitles (4 ms) +17: [ OK ] TextTableFormatterTest.HandlesEmptyColumnTitles (0 ms) 17: [ RUN ] TextTableFormatterTest.HandlesIndentation -17: [ OK ] TextTableFormatterTest.HandlesIndentation (4 ms) +17: [ OK ] TextTableFormatterTest.HandlesIndentation (0 ms) 17: [ RUN ] TextTableFormatterTest.HandlesOverflowingLines -17: [ OK ] TextTableFormatterTest.HandlesOverflowingLines (4 ms) +17: [ OK ] TextTableFormatterTest.HandlesOverflowingLines (0 ms) 17: [ RUN ] TextTableFormatterTest.HandlesLastColumnFolding -17: [ OK ] TextTableFormatterTest.HandlesLastColumnFolding (1 ms) +17: [ OK ] TextTableFormatterTest.HandlesLastColumnFolding (0 ms) 17: [ RUN ] TextTableFormatterTest.HandlesEmptyColumns -17: [ OK ] TextTableFormatterTest.HandlesEmptyColumns (3 ms) -17: [----------] 6 tests from TextTableFormatterTest (19 ms total) +17: [ OK ] TextTableFormatterTest.HandlesEmptyColumns (1 ms) +17: [----------] 6 tests from TextTableFormatterTest (1 ms total) 17: 17: [----------] 3 tests from HelpManagerTest 17: [ RUN ] HelpManagerTest.HandlesRootTopic -17: [ OK ] HelpManagerTest.HandlesRootTopic (1 ms) +17: [ OK ] HelpManagerTest.HandlesRootTopic (0 ms) 17: [ RUN ] HelpManagerTest.HandlesSubTopics 17: [ OK ] HelpManagerTest.HandlesSubTopics (0 ms) 17: [ RUN ] HelpManagerTest.HandlesInvalidTopics 17: [ OK ] HelpManagerTest.HandlesInvalidTopics (0 ms) -17: [----------] 3 tests from HelpManagerTest (1 ms total) +17: [----------] 3 tests from HelpManagerTest (0 ms total) 17: 17: [----------] 2 tests from HelpTopicFormattingTest 17: [ RUN ] HelpTopicFormattingTest.FormatsSimpleTopic -17: [ OK ] HelpTopicFormattingTest.FormatsSimpleTopic (3 ms) +17: [ OK ] HelpTopicFormattingTest.FormatsSimpleTopic (0 ms) 17: [ RUN ] HelpTopicFormattingTest.FormatsCompositeTopicWithSubTopics -17: [ OK ] HelpTopicFormattingTest.FormatsCompositeTopicWithSubTopics (1 ms) -17: [----------] 2 tests from HelpTopicFormattingTest (4 ms total) +17: [ OK ] HelpTopicFormattingTest.FormatsCompositeTopicWithSubTopics (0 ms) +17: [----------] 2 tests from HelpTopicFormattingTest (0 ms total) 17: 17: [----------] 11 tests from HelpWriterContextTest 17: [ RUN ] HelpWriterContextTest.FormatsParagraphs -17: [ OK ] HelpWriterContextTest.FormatsParagraphs (3 ms) +17: [ OK ] HelpWriterContextTest.FormatsParagraphs (0 ms) 17: [ RUN ] HelpWriterContextTest.FormatsRstStyleParagraphs -17: [ OK ] HelpWriterContextTest.FormatsRstStyleParagraphs (1 ms) +17: [ OK ] HelpWriterContextTest.FormatsRstStyleParagraphs (0 ms) 17: [ RUN ] HelpWriterContextTest.CleansUpExtraWhitespace 17: [ OK ] HelpWriterContextTest.CleansUpExtraWhitespace (0 ms) 17: [ RUN ] HelpWriterContextTest.FormatsLiteralText @@ -124376,17 +124384,17 @@ 17: [ RUN ] HelpWriterContextTest.FormatsEnumeratedList 17: [ OK ] HelpWriterContextTest.FormatsEnumeratedList (0 ms) 17: [ RUN ] HelpWriterContextTest.FormatsSimpleTable -17: [ OK ] HelpWriterContextTest.FormatsSimpleTable (0 ms) +17: [ OK ] HelpWriterContextTest.FormatsSimpleTable (1 ms) 17: [ RUN ] HelpWriterContextTest.FormatsGridTable 17: [ OK ] HelpWriterContextTest.FormatsGridTable (0 ms) 17: [ RUN ] HelpWriterContextTest.FormatsTitles 17: [ OK ] HelpWriterContextTest.FormatsTitles (0 ms) -17: [----------] 11 tests from HelpWriterContextTest (4 ms total) +17: [----------] 11 tests from HelpWriterContextTest (1 ms total) 17: 17: [----------] Global test environment tear-down -17: [==========] 22 tests from 4 test cases ran. (28 ms total) +17: [==========] 22 tests from 4 test cases ran. (2 ms total) 17: [ PASSED ] 22 tests. -17/30 Test #17: OnlineHelpUnitTests .............. Passed 1.45 sec +17/30 Test #17: OnlineHelpUnitTests .............. Passed 1.17 sec test 18 Start 18: OptionsUnitTests @@ -124402,14 +124410,14 @@ 18: [ RUN ] AbstractOptionStorageTest.HandlesValueAddition 18: [ OK ] AbstractOptionStorageTest.HandlesValueAddition (0 ms) 18: [ RUN ] AbstractOptionStorageTest.HandlesTooManyValueAddition -18: [ OK ] AbstractOptionStorageTest.HandlesTooManyValueAddition (0 ms) +18: [ OK ] AbstractOptionStorageTest.HandlesTooManyValueAddition (1 ms) 18: [ RUN ] AbstractOptionStorageTest.AllowsEmptyValues 18: [ OK ] AbstractOptionStorageTest.AllowsEmptyValues (0 ms) -18: [----------] 5 tests from AbstractOptionStorageTest (0 ms total) +18: [----------] 5 tests from AbstractOptionStorageTest (1 ms total) 18: 18: [----------] 8 tests from FileNameOptionTest 18: [ RUN ] FileNameOptionTest.HandlesRequiredDefaultValueWithoutExtension -18: [ OK ] FileNameOptionTest.HandlesRequiredDefaultValueWithoutExtension (1 ms) +18: [ OK ] FileNameOptionTest.HandlesRequiredDefaultValueWithoutExtension (0 ms) 18: [ RUN ] FileNameOptionTest.HandlesRequiredOptionWithoutValue 18: [ OK ] FileNameOptionTest.HandlesRequiredOptionWithoutValue (0 ms) 18: [ RUN ] FileNameOptionTest.HandlesOptionalUnsetOption @@ -124424,7 +124432,7 @@ 18: [ OK ] FileNameOptionTest.GivesErrorOnUnknownFileSuffix (0 ms) 18: [ RUN ] FileNameOptionTest.GivesErrorOnInvalidFileSuffix 18: [ OK ] FileNameOptionTest.GivesErrorOnInvalidFileSuffix (0 ms) -18: [----------] 8 tests from FileNameOptionTest (1 ms total) +18: [----------] 8 tests from FileNameOptionTest (0 ms total) 18: 18: [----------] 15 tests from FileNameOptionManagerTest 18: [ RUN ] FileNameOptionManagerTest.AddsMissingExtension @@ -124504,7 +124512,7 @@ 18: [ RUN ] OptionsAssignerIntegerTest.HandlesInvalidValue 18: [ OK ] OptionsAssignerIntegerTest.HandlesInvalidValue (0 ms) 18: [ RUN ] OptionsAssignerIntegerTest.HandlesOverflow -18: [ OK ] OptionsAssignerIntegerTest.HandlesOverflow (0 ms) +18: [ OK ] OptionsAssignerIntegerTest.HandlesOverflow (1 ms) 18: [ RUN ] OptionsAssignerIntegerTest.StoresDefaultValue 18: [ OK ] OptionsAssignerIntegerTest.StoresDefaultValue (0 ms) 18: [ RUN ] OptionsAssignerIntegerTest.StoresDefaultValueIfSet @@ -124516,7 +124524,7 @@ 18: [ RUN ] OptionsAssignerIntegerTest.StoresToVector 18: [ OK ] OptionsAssignerIntegerTest.StoresToVector (0 ms) 18: [ RUN ] OptionsAssignerIntegerTest.HandlesVectors -18: [ OK ] OptionsAssignerIntegerTest.HandlesVectors (1 ms) +18: [ OK ] OptionsAssignerIntegerTest.HandlesVectors (0 ms) 18: [ RUN ] OptionsAssignerIntegerTest.HandlesVectorFromSingleValue 18: [ OK ] OptionsAssignerIntegerTest.HandlesVectorFromSingleValue (0 ms) 18: [ RUN ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValue @@ -124638,16 +124646,16 @@ 18: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultValues 18: [ OK ] TreeValueSupportAdjustTest.FillsDefaultValues (0 ms) 18: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultVectorValues -18: [ OK ] TreeValueSupportAdjustTest.FillsDefaultVectorValues (2 ms) +18: [ OK ] TreeValueSupportAdjustTest.FillsDefaultVectorValues (0 ms) 18: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultObjectValues -18: [ OK ] TreeValueSupportAdjustTest.FillsDefaultObjectValues (5 ms) +18: [ OK ] TreeValueSupportAdjustTest.FillsDefaultObjectValues (0 ms) 18: [ RUN ] TreeValueSupportAdjustTest.NormalizesValues -18: [ OK ] TreeValueSupportAdjustTest.NormalizesValues (6 ms) +18: [ OK ] TreeValueSupportAdjustTest.NormalizesValues (0 ms) 18: [ RUN ] TreeValueSupportAdjustTest.MergesDefaultValues -18: [ OK ] TreeValueSupportAdjustTest.MergesDefaultValues (3 ms) +18: [ OK ] TreeValueSupportAdjustTest.MergesDefaultValues (1 ms) 18: [ RUN ] TreeValueSupportAdjustTest.OrdersValues 18: [ OK ] TreeValueSupportAdjustTest.OrdersValues (0 ms) -18: [----------] 6 tests from TreeValueSupportAdjustTest (18 ms total) +18: [----------] 6 tests from TreeValueSupportAdjustTest (1 ms total) 18: 18: [----------] 8 tests from TreeValueSupportTest 18: [ RUN ] TreeValueSupportTest.SupportsBooleanOption @@ -124655,9 +124663,9 @@ 18: [ RUN ] TreeValueSupportTest.SupportsIntegerOption 18: [ OK ] TreeValueSupportTest.SupportsIntegerOption (0 ms) 18: [ RUN ] TreeValueSupportTest.SupportsInt64Option -18: [ OK ] TreeValueSupportTest.SupportsInt64Option (3 ms) +18: [ OK ] TreeValueSupportTest.SupportsInt64Option (0 ms) 18: [ RUN ] TreeValueSupportTest.SupportsStringOption -18: [ OK ] TreeValueSupportTest.SupportsStringOption (1 ms) +18: [ OK ] TreeValueSupportTest.SupportsStringOption (0 ms) 18: [ RUN ] TreeValueSupportTest.SupportsFloatOption 18: [ OK ] TreeValueSupportTest.SupportsFloatOption (0 ms) 18: [ RUN ] TreeValueSupportTest.SupportsDoubleOption @@ -124666,12 +124674,12 @@ 18: [ OK ] TreeValueSupportTest.SupportsEnumIntOption (0 ms) 18: [ RUN ] TreeValueSupportTest.SupportsEnumOption 18: [ OK ] TreeValueSupportTest.SupportsEnumOption (0 ms) -18: [----------] 8 tests from TreeValueSupportTest (4 ms total) +18: [----------] 8 tests from TreeValueSupportTest (0 ms total) 18: 18: [----------] Global test environment tear-down -18: [==========] 110 tests from 18 test cases ran. (24 ms total) +18: [==========] 110 tests from 18 test cases ran. (3 ms total) 18: [ PASSED ] 110 tests. -18/30 Test #18: OptionsUnitTests ................. Passed 1.41 sec +18/30 Test #18: OptionsUnitTests ................. Passed 1.21 sec test 19 Start 19: PbcutilUnitTest @@ -124681,8 +124689,8 @@ 19: [----------] Global test environment set-up. 19: [----------] 1 test from PbcTest 19: [ RUN ] PbcTest.CalcShiftsWorks -19: [ OK ] PbcTest.CalcShiftsWorks (24 ms) -19: [----------] 1 test from PbcTest (24 ms total) +19: [ OK ] PbcTest.CalcShiftsWorks (1 ms) +19: [----------] 1 test from PbcTest (1 ms total) 19: 19: [----------] 2 tests from PbcEnumsTest 19: [ RUN ] PbcEnumsTest.CenteringTypeNamesAreCorrect @@ -124692,9 +124700,9 @@ 19: [----------] 2 tests from PbcEnumsTest (0 ms total) 19: 19: [----------] Global test environment tear-down -19: [==========] 3 tests from 2 test cases ran. (24 ms total) +19: [==========] 3 tests from 2 test cases ran. (1 ms total) 19: [ PASSED ] 3 tests. -19/30 Test #19: PbcutilUnitTest .................. Passed 1.46 sec +19/30 Test #19: PbcutilUnitTest .................. Passed 1.29 sec test 20 Start 20: RandomUnitTests @@ -124704,25 +124712,25 @@ 20: [----------] Global test environment set-up. 20: [----------] 4 tests from ExponentialDistributionTest 20: [ RUN ] ExponentialDistributionTest.Output -20: [ OK ] ExponentialDistributionTest.Output (7 ms) +20: [ OK ] ExponentialDistributionTest.Output (0 ms) 20: [ RUN ] ExponentialDistributionTest.Logical 20: [ OK ] ExponentialDistributionTest.Logical (0 ms) 20: [ RUN ] ExponentialDistributionTest.Reset 20: [ OK ] ExponentialDistributionTest.Reset (0 ms) 20: [ RUN ] ExponentialDistributionTest.AltParam 20: [ OK ] ExponentialDistributionTest.AltParam (0 ms) -20: [----------] 4 tests from ExponentialDistributionTest (7 ms total) +20: [----------] 4 tests from ExponentialDistributionTest (0 ms total) 20: 20: [----------] 4 tests from GammaDistributionTest 20: [ RUN ] GammaDistributionTest.Output -20: [ OK ] GammaDistributionTest.Output (8 ms) +20: [ OK ] GammaDistributionTest.Output (0 ms) 20: [ RUN ] GammaDistributionTest.Logical 20: [ OK ] GammaDistributionTest.Logical (0 ms) 20: [ RUN ] GammaDistributionTest.Reset 20: [ OK ] GammaDistributionTest.Reset (0 ms) 20: [ RUN ] GammaDistributionTest.AltParam 20: [ OK ] GammaDistributionTest.AltParam (0 ms) -20: [----------] 4 tests from GammaDistributionTest (9 ms total) +20: [----------] 4 tests from GammaDistributionTest (0 ms total) 20: 20: [----------] 4 tests from NormalDistributionTest 20: [ RUN ] NormalDistributionTest.Output @@ -124742,23 +124750,23 @@ 20: 20: [----------] 6 tests from TabulatedNormalDistributionTest 20: [ RUN ] TabulatedNormalDistributionTest.Output14 -20: [ OK ] TabulatedNormalDistributionTest.Output14 (8 ms) +20: [ OK ] TabulatedNormalDistributionTest.Output14 (0 ms) 20: [ RUN ] TabulatedNormalDistributionTest.Output16 -20: [ OK ] TabulatedNormalDistributionTest.Output16 (11 ms) +20: [ OK ] TabulatedNormalDistributionTest.Output16 (0 ms) 20: [ RUN ] TabulatedNormalDistributionTest.OutputDouble14 -20: [ OK ] TabulatedNormalDistributionTest.OutputDouble14 (3 ms) +20: [ OK ] TabulatedNormalDistributionTest.OutputDouble14 (0 ms) 20: [ RUN ] TabulatedNormalDistributionTest.Logical 20: [ OK ] TabulatedNormalDistributionTest.Logical (0 ms) 20: [ RUN ] TabulatedNormalDistributionTest.Reset 20: [ OK ] TabulatedNormalDistributionTest.Reset (0 ms) 20: [ RUN ] TabulatedNormalDistributionTest.AltParam 20: [ OK ] TabulatedNormalDistributionTest.AltParam (0 ms) -20: [----------] 6 tests from TabulatedNormalDistributionTest (23 ms total) +20: [----------] 6 tests from TabulatedNormalDistributionTest (0 ms total) 20: 20: [----------] 1 test from TabulatedNormalDistributionTableTest 20: [ RUN ] TabulatedNormalDistributionTableTest.HasValidProperties -20: [ OK ] TabulatedNormalDistributionTableTest.HasValidProperties (2 ms) -20: [----------] 1 test from TabulatedNormalDistributionTableTest (2 ms total) +20: [ OK ] TabulatedNormalDistributionTableTest.HasValidProperties (1 ms) +20: [----------] 1 test from TabulatedNormalDistributionTableTest (1 ms total) 20: 20: [----------] 6 tests from ThreeFry2x64Test 20: [ RUN ] ThreeFry2x64Test.Logical @@ -124777,18 +124785,18 @@ 20: 20: [----------] 4 tests from UniformIntDistributionTest 20: [ RUN ] UniformIntDistributionTest.Output -20: [ OK ] UniformIntDistributionTest.Output (6 ms) +20: [ OK ] UniformIntDistributionTest.Output (0 ms) 20: [ RUN ] UniformIntDistributionTest.Logical 20: [ OK ] UniformIntDistributionTest.Logical (0 ms) 20: [ RUN ] UniformIntDistributionTest.Reset 20: [ OK ] UniformIntDistributionTest.Reset (0 ms) 20: [ RUN ] UniformIntDistributionTest.AltParam 20: [ OK ] UniformIntDistributionTest.AltParam (0 ms) -20: [----------] 4 tests from UniformIntDistributionTest (6 ms total) +20: [----------] 4 tests from UniformIntDistributionTest (0 ms total) 20: 20: [----------] 5 tests from UniformRealDistributionTest 20: [ RUN ] UniformRealDistributionTest.GenerateCanonical -20: [ OK ] UniformRealDistributionTest.GenerateCanonical (3 ms) +20: [ OK ] UniformRealDistributionTest.GenerateCanonical (0 ms) 20: [ RUN ] UniformRealDistributionTest.Output 20: [ OK ] UniformRealDistributionTest.Output (0 ms) 20: [ RUN ] UniformRealDistributionTest.Logical @@ -124797,19 +124805,19 @@ 20: [ OK ] UniformRealDistributionTest.Reset (0 ms) 20: [ RUN ] UniformRealDistributionTest.AltParam 20: [ OK ] UniformRealDistributionTest.AltParam (0 ms) -20: [----------] 5 tests from UniformRealDistributionTest (4 ms total) +20: [----------] 5 tests from UniformRealDistributionTest (0 ms total) 20: 20: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test 20: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/0 20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/0 (0 ms) 20: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/1 -20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/1 (3 ms) +20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/1 (0 ms) 20: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/2 20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/2 (1 ms) 20: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/0 -20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/0 (3 ms) +20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/0 (0 ms) 20: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/1 -20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/1 (1 ms) +20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/1 (0 ms) 20: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/2 20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/2 (0 ms) 20: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/0 @@ -124818,12 +124826,12 @@ 20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/1 (0 ms) 20: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/2 20: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/2 (0 ms) -20: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test (8 ms total) +20: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test (1 ms total) 20: 20: [----------] Global test environment tear-down -20: [==========] 44 tests from 10 test cases ran. (60 ms total) +20: [==========] 44 tests from 10 test cases ran. (3 ms total) 20: [ PASSED ] 44 tests. -20/30 Test #20: RandomUnitTests .................. Passed 1.47 sec +20/30 Test #20: RandomUnitTests .................. Passed 1.11 sec test 21 Start 21: RestraintTests @@ -124839,7 +124847,7 @@ 21: [----------] Global test environment tear-down 21: [==========] 1 test from 1 test case ran. (0 ms total) 21: [ PASSED ] 1 test. -21/30 Test #21: RestraintTests ................... Passed 1.14 sec +21/30 Test #21: RestraintTests ................... Passed 1.17 sec test 22 Start 22: TableUnitTests @@ -124853,7 +124861,7 @@ 22: [ RUN ] SplineTableTest/0.Sinc 22: [ OK ] SplineTableTest/0.Sinc (1 ms) 22: [ RUN ] SplineTableTest/0.LJ12 -22: [ OK ] SplineTableTest/0.LJ12 (50 ms) +22: [ OK ] SplineTableTest/0.LJ12 (26 ms) 22: [ RUN ] SplineTableTest/0.PmeCorrection 22: [ OK ] SplineTableTest/0.PmeCorrection (1 ms) 22: [ RUN ] SplineTableTest/0.HandlesIncorrectNumericalInput @@ -124861,42 +124869,42 @@ 22: [ RUN ] SplineTableTest/0.NumericalInputPmeCorr 22: [ OK ] SplineTableTest/0.NumericalInputPmeCorr (1 ms) 22: [ RUN ] SplineTableTest/0.TwoFunctions -22: [ OK ] SplineTableTest/0.TwoFunctions (88 ms) +22: [ OK ] SplineTableTest/0.TwoFunctions (62 ms) 22: [ RUN ] SplineTableTest/0.ThreeFunctions -22: [ OK ] SplineTableTest/0.ThreeFunctions (88 ms) +22: [ OK ] SplineTableTest/0.ThreeFunctions (59 ms) 22: [ RUN ] SplineTableTest/0.Simd -22: [ OK ] SplineTableTest/0.Simd (22 ms) +22: [ OK ] SplineTableTest/0.Simd (10 ms) 22: [ RUN ] SplineTableTest/0.SimdTwoFunctions -22: [ OK ] SplineTableTest/0.SimdTwoFunctions (70 ms) -22: [----------] 10 tests from SplineTableTest/0 (322 ms total) +22: [ OK ] SplineTableTest/0.SimdTwoFunctions (49 ms) +22: [----------] 10 tests from SplineTableTest/0 (220 ms total) 22: 22: [----------] 10 tests from SplineTableTest/1, where TypeParam = gmx::CubicSplineTable 22: [ RUN ] SplineTableTest/1.HandlesIncorrectInput -22: [ OK ] SplineTableTest/1.HandlesIncorrectInput (6 ms) +22: [ OK ] SplineTableTest/1.HandlesIncorrectInput (1 ms) 22: [ RUN ] SplineTableTest/1.Sinc 22: [ OK ] SplineTableTest/1.Sinc (0 ms) 22: [ RUN ] SplineTableTest/1.LJ12 22: [ OK ] SplineTableTest/1.LJ12 (2 ms) 22: [ RUN ] SplineTableTest/1.PmeCorrection -22: [ OK ] SplineTableTest/1.PmeCorrection (10 ms) +22: [ OK ] SplineTableTest/1.PmeCorrection (9 ms) 22: [ RUN ] SplineTableTest/1.HandlesIncorrectNumericalInput -22: [ OK ] SplineTableTest/1.HandlesIncorrectNumericalInput (0 ms) +22: [ OK ] SplineTableTest/1.HandlesIncorrectNumericalInput (1 ms) 22: [ RUN ] SplineTableTest/1.NumericalInputPmeCorr -22: [ OK ] SplineTableTest/1.NumericalInputPmeCorr (1 ms) +22: [ OK ] SplineTableTest/1.NumericalInputPmeCorr (0 ms) 22: [ RUN ] SplineTableTest/1.TwoFunctions -22: [ OK ] SplineTableTest/1.TwoFunctions (12 ms) +22: [ OK ] SplineTableTest/1.TwoFunctions (5 ms) 22: [ RUN ] SplineTableTest/1.ThreeFunctions -22: [ OK ] SplineTableTest/1.ThreeFunctions (13 ms) +22: [ OK ] SplineTableTest/1.ThreeFunctions (9 ms) 22: [ RUN ] SplineTableTest/1.Simd -22: [ OK ] SplineTableTest/1.Simd (1 ms) +22: [ OK ] SplineTableTest/1.Simd (9 ms) 22: [ RUN ] SplineTableTest/1.SimdTwoFunctions -22: [ OK ] SplineTableTest/1.SimdTwoFunctions (12 ms) -22: [----------] 10 tests from SplineTableTest/1 (57 ms total) +22: [ OK ] SplineTableTest/1.SimdTwoFunctions (4 ms) +22: [----------] 10 tests from SplineTableTest/1 (40 ms total) 22: 22: [----------] Global test environment tear-down -22: [==========] 20 tests from 2 test cases ran. (379 ms total) +22: [==========] 20 tests from 2 test cases ran. (260 ms total) 22: [ PASSED ] 20 tests. -22/30 Test #22: TableUnitTests ................... Passed 1.72 sec +22/30 Test #22: TableUnitTests ................... Passed 1.54 sec test 23 Start 23: TaskAssignmentUnitTests @@ -124919,7 +124927,7 @@ 23: [----------] Global test environment tear-down 23: [==========] 3 tests from 2 test cases ran. (1 ms total) 23: [ PASSED ] 3 tests. -23/30 Test #23: TaskAssignmentUnitTests .......... Passed 1.18 sec +23/30 Test #23: TaskAssignmentUnitTests .......... Passed 1.14 sec test 24 Start 24: TopologyTest @@ -124953,15 +124961,15 @@ 24: [ RUN ] SymtabTest.TryToAddDuplicates 24: [ OK ] SymtabTest.TryToAddDuplicates (0 ms) 24: [ RUN ] SymtabTest.AddLargeNumberOfEntries -24: [ OK ] SymtabTest.AddLargeNumberOfEntries (15 ms) +24: [ OK ] SymtabTest.AddLargeNumberOfEntries (0 ms) 24: [ RUN ] SymtabTest.NoDuplicatesInLargeTable 24: [ OK ] SymtabTest.NoDuplicatesInLargeTable (0 ms) -24: [----------] 6 tests from SymtabTest (16 ms total) +24: [----------] 6 tests from SymtabTest (0 ms total) 24: 24: [----------] Global test environment tear-down -24: [==========] 11 tests from 3 test cases ran. (16 ms total) +24: [==========] 11 tests from 3 test cases ran. (0 ms total) 24: [ PASSED ] 11 tests. -24/30 Test #24: TopologyTest ..................... Passed 1.40 sec +24/30 Test #24: TopologyTest ..................... Passed 1.15 sec test 25 Start 25: PullTest @@ -124985,7 +124993,7 @@ 25: [----------] Global test environment tear-down 25: [==========] 5 tests from 1 test case ran. (0 ms total) 25: [ PASSED ] 5 tests. -25/30 Test #25: PullTest ......................... Passed 1.26 sec +25/30 Test #25: PullTest ......................... Passed 1.23 sec test 26 Start 26: AwhTest @@ -124995,44 +125003,44 @@ 26: [----------] Global test environment set-up. 26: [----------] 1 test from BiasTest 26: [ RUN ] BiasTest.DetectsCovering -26: [ OK ] BiasTest.DetectsCovering (0 ms) -26: [----------] 1 test from BiasTest (0 ms total) +26: [ OK ] BiasTest.DetectsCovering (1 ms) +26: [----------] 1 test from BiasTest (1 ms total) 26: 26: [----------] 1 test from gridTest 26: [ RUN ] gridTest.neighborhood -26: [ OK ] gridTest.neighborhood (2 ms) -26: [----------] 1 test from gridTest (2 ms total) +26: [ OK ] gridTest.neighborhood (1 ms) +26: [----------] 1 test from gridTest (1 ms total) 26: 26: [----------] 8 tests from WithParameters/BiasTest 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/0 -26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/0 (21 ms) +26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/0 (0 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/1 -26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/1 (9 ms) +26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/1 (1 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/2 -26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/2 (1 ms) +26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/2 (0 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/3 26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/3 (0 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/4 -26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/4 (7 ms) +26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/4 (0 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/5 -26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/5 (0 ms) +26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/5 (4 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/6 -26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/6 (1 ms) +26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/6 (0 ms) 26: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/7 -26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/7 (1 ms) -26: [----------] 8 tests from WithParameters/BiasTest (40 ms total) +26: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/7 (0 ms) +26: [----------] 8 tests from WithParameters/BiasTest (7 ms total) 26: 26: [----------] 2 tests from WithParameters/BiasStateTest 26: [ RUN ] WithParameters/BiasStateTest.InitializesFromFile/0 -26: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/0 (1 ms) +26: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/0 (0 ms) 26: [ RUN ] WithParameters/BiasStateTest.InitializesFromFile/1 26: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/1 (0 ms) -26: [----------] 2 tests from WithParameters/BiasStateTest (1 ms total) +26: [----------] 2 tests from WithParameters/BiasStateTest (0 ms total) 26: 26: [----------] Global test environment tear-down -26: [==========] 12 tests from 4 test cases ran. (43 ms total) +26: [==========] 12 tests from 4 test cases ran. (9 ms total) 26: [ PASSED ] 12 tests. -26/30 Test #26: AwhTest .......................... Passed 1.16 sec +26/30 Test #26: AwhTest .......................... Passed 1.24 sec test 27 Start 27: SimdUnitTests @@ -125151,7 +125159,7 @@ 27: [ OK ] SimdFloatingpointTest.cvtFloat2Double (0 ms) 27: [ RUN ] SimdFloatingpointTest.cvtDouble2Float 27: [ OK ] SimdFloatingpointTest.cvtDouble2Float (0 ms) -27: [----------] 42 tests from SimdFloatingpointTest (0 ms total) +27: [----------] 42 tests from SimdFloatingpointTest (1 ms total) 27: 27: [----------] 16 tests from SimdFloatingpointUtilTest 27: [ RUN ] SimdFloatingpointUtilTest.gatherLoadTranspose4 @@ -125199,7 +125207,7 @@ 27: 27: [----------] 56 tests from SimdMathTest 27: [ RUN ] SimdMathTest.generateTestPointsFloat -27: [ OK ] SimdMathTest.generateTestPointsFloat (23 ms) +27: [ OK ] SimdMathTest.generateTestPointsFloat (0 ms) 27: [ RUN ] SimdMathTest.copysign 27: [ OK ] SimdMathTest.copysign (0 ms) 27: [ RUN ] SimdMathTest.invsqrt @@ -125209,53 +125217,53 @@ 27: [ RUN ] SimdMathTest.invsqrtPair 27: [ OK ] SimdMathTest.invsqrtPair (1 ms) 27: [ RUN ] SimdMathTest.sqrt -27: [ OK ] SimdMathTest.sqrt (0 ms) +27: [ OK ] SimdMathTest.sqrt (1 ms) 27: [ RUN ] SimdMathTest.sqrtUnsafe -27: [ OK ] SimdMathTest.sqrtUnsafe (1 ms) +27: [ OK ] SimdMathTest.sqrtUnsafe (0 ms) 27: [ RUN ] SimdMathTest.inv -27: [ OK ] SimdMathTest.inv (10 ms) +27: [ OK ] SimdMathTest.inv (15 ms) 27: [ RUN ] SimdMathTest.maskzInv 27: [ OK ] SimdMathTest.maskzInv (0 ms) 27: [ RUN ] SimdMathTest.cbrt 27: [ OK ] SimdMathTest.cbrt (1 ms) 27: [ RUN ] SimdMathTest.invcbrt -27: [ OK ] SimdMathTest.invcbrt (2 ms) +27: [ OK ] SimdMathTest.invcbrt (9 ms) 27: [ RUN ] SimdMathTest.log2 -27: [ OK ] SimdMathTest.log2 (0 ms) +27: [ OK ] SimdMathTest.log2 (1 ms) 27: [ RUN ] SimdMathTest.log -27: [ OK ] SimdMathTest.log (5 ms) +27: [ OK ] SimdMathTest.log (0 ms) 27: [ RUN ] SimdMathTest.exp2 27: [ OK ] SimdMathTest.exp2 (2 ms) 27: [ RUN ] SimdMathTest.exp2Unsafe 27: [ OK ] SimdMathTest.exp2Unsafe (0 ms) 27: [ RUN ] SimdMathTest.exp -27: [ OK ] SimdMathTest.exp (11 ms) +27: [ OK ] SimdMathTest.exp (6 ms) 27: [ RUN ] SimdMathTest.expUnsafe -27: [ OK ] SimdMathTest.expUnsafe (0 ms) +27: [ OK ] SimdMathTest.expUnsafe (1 ms) 27: [ RUN ] SimdMathTest.pow 27: [ OK ] SimdMathTest.pow (0 ms) 27: [ RUN ] SimdMathTest.powUnsafe 27: [ OK ] SimdMathTest.powUnsafe (0 ms) 27: [ RUN ] SimdMathTest.erf -27: [ OK ] SimdMathTest.erf (6 ms) +27: [ OK ] SimdMathTest.erf (1 ms) 27: [ RUN ] SimdMathTest.erfc -27: [ OK ] SimdMathTest.erfc (2 ms) +27: [ OK ] SimdMathTest.erfc (14 ms) 27: [ RUN ] SimdMathTest.sin 27: [ OK ] SimdMathTest.sin (1 ms) 27: [ RUN ] SimdMathTest.cos -27: [ OK ] SimdMathTest.cos (5 ms) +27: [ OK ] SimdMathTest.cos (10 ms) 27: [ RUN ] SimdMathTest.tan 27: [ OK ] SimdMathTest.tan (1 ms) 27: [ RUN ] SimdMathTest.asin 27: [ OK ] SimdMathTest.asin (1 ms) 27: [ RUN ] SimdMathTest.acos -27: [ OK ] SimdMathTest.acos (9 ms) +27: [ OK ] SimdMathTest.acos (1 ms) 27: [ RUN ] SimdMathTest.atan -27: [ OK ] SimdMathTest.atan (1 ms) +27: [ OK ] SimdMathTest.atan (0 ms) 27: [ RUN ] SimdMathTest.atan2 27: [ OK ] SimdMathTest.atan2 (0 ms) 27: [ RUN ] SimdMathTest.pmeForceCorrection -27: [ OK ] SimdMathTest.pmeForceCorrection (0 ms) +27: [ OK ] SimdMathTest.pmeForceCorrection (13 ms) 27: [ RUN ] SimdMathTest.pmePotentialCorrection 27: [ OK ] SimdMathTest.pmePotentialCorrection (1 ms) 27: [ RUN ] SimdMathTest.invsqrtSingleAccuracy @@ -125265,25 +125273,25 @@ 27: [ RUN ] SimdMathTest.sqrtSingleAccuracy 27: [ OK ] SimdMathTest.sqrtSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.sqrtSingleAccuracyUnsafe -27: [ OK ] SimdMathTest.sqrtSingleAccuracyUnsafe (9 ms) +27: [ OK ] SimdMathTest.sqrtSingleAccuracyUnsafe (0 ms) 27: [ RUN ] SimdMathTest.invSingleAccuracy -27: [ OK ] SimdMathTest.invSingleAccuracy (2 ms) +27: [ OK ] SimdMathTest.invSingleAccuracy (11 ms) 27: [ RUN ] SimdMathTest.cbrtSingleAccuracy -27: [ OK ] SimdMathTest.cbrtSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.cbrtSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.invcbrtSingleAccuracy -27: [ OK ] SimdMathTest.invcbrtSingleAccuracy (13 ms) +27: [ OK ] SimdMathTest.invcbrtSingleAccuracy (2 ms) 27: [ RUN ] SimdMathTest.log2SingleAccuracy -27: [ OK ] SimdMathTest.log2SingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.log2SingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.logSingleAccuracy -27: [ OK ] SimdMathTest.logSingleAccuracy (0 ms) +27: [ OK ] SimdMathTest.logSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.exp2SingleAccuracy -27: [ OK ] SimdMathTest.exp2SingleAccuracy (3 ms) +27: [ OK ] SimdMathTest.exp2SingleAccuracy (13 ms) 27: [ RUN ] SimdMathTest.exp2SingleAccuracyUnsafe -27: [ OK ] SimdMathTest.exp2SingleAccuracyUnsafe (1 ms) +27: [ OK ] SimdMathTest.exp2SingleAccuracyUnsafe (0 ms) 27: [ RUN ] SimdMathTest.expSingleAccuracy -27: [ OK ] SimdMathTest.expSingleAccuracy (2 ms) +27: [ OK ] SimdMathTest.expSingleAccuracy (6 ms) 27: [ RUN ] SimdMathTest.expSingleAccuracyUnsafe -27: [ OK ] SimdMathTest.expSingleAccuracyUnsafe (9 ms) +27: [ OK ] SimdMathTest.expSingleAccuracyUnsafe (1 ms) 27: [ RUN ] SimdMathTest.powSingleAccuracy 27: [ OK ] SimdMathTest.powSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.powSingleAccuracyUnsafe @@ -125291,26 +125299,26 @@ 27: [ RUN ] SimdMathTest.erfSingleAccuracy 27: [ OK ] SimdMathTest.erfSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.erfcSingleAccuracy -27: [ OK ] SimdMathTest.erfcSingleAccuracy (2 ms) +27: [ OK ] SimdMathTest.erfcSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.sinSingleAccuracy -27: [ OK ] SimdMathTest.sinSingleAccuracy (9 ms) +27: [ OK ] SimdMathTest.sinSingleAccuracy (14 ms) 27: [ RUN ] SimdMathTest.cosSingleAccuracy 27: [ OK ] SimdMathTest.cosSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.tanSingleAccuracy -27: [ OK ] SimdMathTest.tanSingleAccuracy (10 ms) +27: [ OK ] SimdMathTest.tanSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.asinSingleAccuracy -27: [ OK ] SimdMathTest.asinSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.asinSingleAccuracy (13 ms) 27: [ RUN ] SimdMathTest.acosSingleAccuracy -27: [ OK ] SimdMathTest.acosSingleAccuracy (0 ms) +27: [ OK ] SimdMathTest.acosSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.atanSingleAccuracy 27: [ OK ] SimdMathTest.atanSingleAccuracy (1 ms) 27: [ RUN ] SimdMathTest.atan2SingleAccuracy 27: [ OK ] SimdMathTest.atan2SingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.pmeForceCorrectionSingleAccuracy -27: [ OK ] SimdMathTest.pmeForceCorrectionSingleAccuracy (1 ms) +27: [ OK ] SimdMathTest.pmeForceCorrectionSingleAccuracy (0 ms) 27: [ RUN ] SimdMathTest.pmePotentialCorrectionSingleAccuracy -27: [ OK ] SimdMathTest.pmePotentialCorrectionSingleAccuracy (9 ms) -27: [----------] 56 tests from SimdMathTest (163 ms total) +27: [ OK ] SimdMathTest.pmePotentialCorrectionSingleAccuracy (0 ms) +27: [----------] 56 tests from SimdMathTest (150 ms total) 27: 27: [----------] 1 test from EmptyArrayRefTest 27: [ RUN ] EmptyArrayRefTest.IsEmpty @@ -125482,12 +125490,12 @@ 27: [ RUN ] Simd4FloatingpointTest.blend 27: [ OK ] Simd4FloatingpointTest.blend (0 ms) 27: [ RUN ] Simd4FloatingpointTest.reduce -27: [ OK ] Simd4FloatingpointTest.reduce (1 ms) +27: [ OK ] Simd4FloatingpointTest.reduce (0 ms) 27: [ RUN ] Simd4FloatingpointTest.dotProduct 27: [ OK ] Simd4FloatingpointTest.dotProduct (0 ms) 27: [ RUN ] Simd4FloatingpointTest.transpose 27: [ OK ] Simd4FloatingpointTest.transpose (0 ms) -27: [----------] 32 tests from Simd4FloatingpointTest (1 ms total) +27: [----------] 32 tests from Simd4FloatingpointTest (13 ms total) 27: 27: [----------] 1 test from Simd4VectorOperationsTest 27: [ RUN ] Simd4VectorOperationsTest.norm2 @@ -125685,7 +125693,7 @@ 27: [----------] Global test environment tear-down 27: [==========] 288 tests from 22 test cases ran. (164 ms total) 27: [ PASSED ] 288 tests. -27/30 Test #27: SimdUnitTests .................... Passed 1.50 sec +27/30 Test #27: SimdUnitTests .................... Passed 1.48 sec test 28 Start 28: CompatibilityHelpersTests @@ -125755,7 +125763,7 @@ 28: [ RUN ] OptionalTest.CanCopyAssignBetweenEngagedAndDisengagedOptionals 28: [ OK ] OptionalTest.CanCopyAssignBetweenEngagedAndDisengagedOptionals (0 ms) 28: [ RUN ] OptionalTest.CanCopyAssignBetweenEngagedAndDisengagedOptionalsConverting -28: [ OK ] OptionalTest.CanCopyAssignBetweenEngagedAndDisengagedOptionalsConverting (0 ms) +28: [ OK ] OptionalTest.CanCopyAssignBetweenEngagedAndDisengagedOptionalsConverting (1 ms) 28: [ RUN ] OptionalTest.CanMoveAssignBetweenEngagedAndDisengagedOptionalsConverting 28: [ OK ] OptionalTest.CanMoveAssignBetweenEngagedAndDisengagedOptionalsConverting (0 ms) 28: [ RUN ] OptionalTest.CanCopyAssignFromLiteral @@ -125775,7 +125783,7 @@ 28: [ RUN ] OptionalTest.CanResetContent 28: [ OK ] OptionalTest.CanResetContent (0 ms) 28: [ RUN ] OptionalTest.ProvidesRelationalOperators -28: [ OK ] OptionalTest.ProvidesRelationalOperators (1 ms) +28: [ OK ] OptionalTest.ProvidesRelationalOperators (0 ms) 28: [ RUN ] OptionalTest.ProvidesMixedTypeRelationalOperators 28: [ OK ] OptionalTest.ProvidesMixedTypeRelationalOperators (0 ms) 28: [ RUN ] OptionalTest.CanProduceHash @@ -125962,7 +125970,7 @@ 28: [ RUN ] StringViewTest.ThrowsOnOutOfBoundsCopy 28: [ OK ] StringViewTest.ThrowsOnOutOfBoundsCopy (0 ms) 28: [ RUN ] StringViewTest.CanObtainSubstringWithSubstr -28: [ OK ] StringViewTest.CanObtainSubstringWithSubstr (1 ms) +28: [ OK ] StringViewTest.CanObtainSubstringWithSubstr (0 ms) 28: [ RUN ] StringViewTest.ThrowsOnOutOfBoundsSubstr 28: [ OK ] StringViewTest.ThrowsOnOutOfBoundsSubstr (0 ms) 28: [ RUN ] StringViewTest.CanLexicallyCompareViewWithCompare @@ -126089,7 +126097,7 @@ 28: [----------] Global test environment tear-down 28: [==========] 170 tests from 12 test cases ran. (2 ms total) 28: [ PASSED ] 170 tests. -28/30 Test #28: CompatibilityHelpersTests ........ Passed 1.24 sec +28/30 Test #28: CompatibilityHelpersTests ........ Passed 0.98 sec test 29 Start 29: FileIOTests @@ -126121,8 +126129,8 @@ 29: [ RUN ] MrcDensityMap.ReadsCoordinateTransformationFromFile 29: [ OK ] MrcDensityMap.ReadsCoordinateTransformationFromFile (0 ms) 29: [ RUN ] MrcDensityMap.ReadsDensityDataFromFile -29: [ OK ] MrcDensityMap.ReadsDensityDataFromFile (19 ms) -29: [----------] 4 tests from MrcDensityMap (20 ms total) +29: [ OK ] MrcDensityMap.ReadsDensityDataFromFile (9 ms) +29: [----------] 4 tests from MrcDensityMap (10 ms total) 29: 29: [----------] 8 tests from MrcDensityMapHeaderTest 29: [ RUN ] MrcDensityMapHeaderTest.DataSizeIsZeroForDefaultHeader @@ -126196,8 +126204,8 @@ 29: 29: [----------] 1 test from FileIOXdrSerializerTest 29: [ RUN ] FileIOXdrSerializerTest.SizeIsCorrect -29: [ OK ] FileIOXdrSerializerTest.SizeIsCorrect (1 ms) -29: [----------] 1 test from FileIOXdrSerializerTest (1 ms total) +29: [ OK ] FileIOXdrSerializerTest.SizeIsCorrect (0 ms) +29: [----------] 1 test from FileIOXdrSerializerTest (0 ms total) 29: 29: [----------] 2 tests from TngTest 29: [ RUN ] TngTest.CanOpenTngFile @@ -126210,19 +126218,19 @@ 29: 29: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest 29: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 -29: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 (0 ms) +29: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 (1 ms) 29: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 29: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 (0 ms) 29: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 -29: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 (10 ms) +29: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 (1 ms) 29: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 -29: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 (1 ms) -29: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest (11 ms total) +29: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 (0 ms) +29: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest (2 ms total) 29: 29: [----------] Global test environment tear-down -29: [==========] 33 tests from 8 test cases ran. (34 ms total) +29: [==========] 33 tests from 8 test cases ran. (14 ms total) 29: [ PASSED ] 33 tests. -29/30 Test #29: FileIOTests ...................... Passed 1.20 sec +29/30 Test #29: FileIOTests ...................... Passed 1.19 sec test 30 Start 30: SelectionUnitTests @@ -126237,17 +126245,17 @@ 30: 30: [----------] 15 tests from IndexBlockTest 30: [ RUN ] IndexBlockTest.CreatesUnknownBlock -30: [ OK ] IndexBlockTest.CreatesUnknownBlock (20 ms) +30: [ OK ] IndexBlockTest.CreatesUnknownBlock (1 ms) 30: [ RUN ] IndexBlockTest.CreatesAtomBlock -30: [ OK ] IndexBlockTest.CreatesAtomBlock (7 ms) +30: [ OK ] IndexBlockTest.CreatesAtomBlock (0 ms) 30: [ RUN ] IndexBlockTest.CreatesResidueBlocksForSimpleTopology -30: [ OK ] IndexBlockTest.CreatesResidueBlocksForSimpleTopology (12 ms) +30: [ OK ] IndexBlockTest.CreatesResidueBlocksForSimpleTopology (0 ms) 30: [ RUN ] IndexBlockTest.CreatesResidueBlocksForComplexTopology -30: [ OK ] IndexBlockTest.CreatesResidueBlocksForComplexTopology (8 ms) +30: [ OK ] IndexBlockTest.CreatesResidueBlocksForComplexTopology (0 ms) 30: [ RUN ] IndexBlockTest.CreatesMoleculeBlocksForSimpleTopology -30: [ OK ] IndexBlockTest.CreatesMoleculeBlocksForSimpleTopology (7 ms) +30: [ OK ] IndexBlockTest.CreatesMoleculeBlocksForSimpleTopology (0 ms) 30: [ RUN ] IndexBlockTest.CreatesMoleculeBlocksForComplexTopology -30: [ OK ] IndexBlockTest.CreatesMoleculeBlocksForComplexTopology (4 ms) +30: [ OK ] IndexBlockTest.CreatesMoleculeBlocksForComplexTopology (0 ms) 30: [ RUN ] IndexBlockTest.CreatesSingleBlock 30: [ OK ] IndexBlockTest.CreatesSingleBlock (0 ms) 30: [ RUN ] IndexBlockTest.ChecksGroupForFullBlocksPositive @@ -126266,32 +126274,32 @@ 30: [ OK ] IndexBlockTest.ChecksGroupForCompleteMoleculesPositive (0 ms) 30: [ RUN ] IndexBlockTest.ChecksGroupForCompleteMoleculesNegative 30: [ OK ] IndexBlockTest.ChecksGroupForCompleteMoleculesNegative (0 ms) -30: [----------] 15 tests from IndexBlockTest (61 ms total) +30: [----------] 15 tests from IndexBlockTest (1 ms total) 30: 30: [----------] 11 tests from IndexMapTest 30: [ RUN ] IndexMapTest.InitializesAtomBlock -30: [ OK ] IndexMapTest.InitializesAtomBlock (2 ms) +30: [ OK ] IndexMapTest.InitializesAtomBlock (1 ms) 30: [ RUN ] IndexMapTest.InitializesOrgIdGroupAtom -30: [ OK ] IndexMapTest.InitializesOrgIdGroupAtom (1 ms) +30: [ OK ] IndexMapTest.InitializesOrgIdGroupAtom (0 ms) 30: [ RUN ] IndexMapTest.InitializesOrgIdGroupSingle -30: [ OK ] IndexMapTest.InitializesOrgIdGroupSingle (8 ms) +30: [ OK ] IndexMapTest.InitializesOrgIdGroupSingle (0 ms) 30: [ RUN ] IndexMapTest.InitializesOrgIdGroupResidue 30: [ OK ] IndexMapTest.InitializesOrgIdGroupResidue (0 ms) 30: [ RUN ] IndexMapTest.InitializesOrgIdGroupMolecule -30: [ OK ] IndexMapTest.InitializesOrgIdGroupMolecule (1 ms) +30: [ OK ] IndexMapTest.InitializesOrgIdGroupMolecule (0 ms) 30: [ RUN ] IndexMapTest.InitializesOrgIdGroupAll 30: [ OK ] IndexMapTest.InitializesOrgIdGroupAll (0 ms) 30: [ RUN ] IndexMapTest.InitializesMoleculeBlock -30: [ OK ] IndexMapTest.InitializesMoleculeBlock (1 ms) +30: [ OK ] IndexMapTest.InitializesMoleculeBlock (0 ms) 30: [ RUN ] IndexMapTest.MapsSingleBlock -30: [ OK ] IndexMapTest.MapsSingleBlock (6 ms) +30: [ OK ] IndexMapTest.MapsSingleBlock (0 ms) 30: [ RUN ] IndexMapTest.MapsResidueBlocks -30: [ OK ] IndexMapTest.MapsResidueBlocks (8 ms) +30: [ OK ] IndexMapTest.MapsResidueBlocks (0 ms) 30: [ RUN ] IndexMapTest.MapsResidueBlocksWithMask 30: [ OK ] IndexMapTest.MapsResidueBlocksWithMask (1 ms) 30: [ RUN ] IndexMapTest.HandlesMultipleRequests -30: [ OK ] IndexMapTest.HandlesMultipleRequests (15 ms) -30: [----------] 11 tests from IndexMapTest (43 ms total) +30: [ OK ] IndexMapTest.HandlesMultipleRequests (0 ms) +30: [----------] 11 tests from IndexMapTest (2 ms total) 30: 30: [----------] 3 tests from IndexGroupsAndNamesTest 30: [ RUN ] IndexGroupsAndNamesTest.containsNames @@ -126304,25 +126312,25 @@ 30: 30: [----------] 15 tests from NeighborhoodSearchTest 30: [ RUN ] NeighborhoodSearchTest.SimpleSearch -30: [ OK ] NeighborhoodSearchTest.SimpleSearch (27 ms) +30: [ OK ] NeighborhoodSearchTest.SimpleSearch (49 ms) 30: [ RUN ] NeighborhoodSearchTest.SimpleSearchXY -30: [ OK ] NeighborhoodSearchTest.SimpleSearchXY (23 ms) +30: [ OK ] NeighborhoodSearchTest.SimpleSearchXY (41 ms) 30: [ RUN ] NeighborhoodSearchTest.GridSearchBox -30: [ OK ] NeighborhoodSearchTest.GridSearchBox (6 ms) +30: [ OK ] NeighborhoodSearchTest.GridSearchBox (2 ms) 30: [ RUN ] NeighborhoodSearchTest.GridSearchTriclinic -30: [ OK ] NeighborhoodSearchTest.GridSearchTriclinic (14 ms) +30: [ OK ] NeighborhoodSearchTest.GridSearchTriclinic (28 ms) 30: [ RUN ] NeighborhoodSearchTest.GridSearch2DPBC -30: [ OK ] NeighborhoodSearchTest.GridSearch2DPBC (8 ms) +30: [ OK ] NeighborhoodSearchTest.GridSearch2DPBC (12 ms) 30: [ RUN ] NeighborhoodSearchTest.GridSearchNoPBC -30: [ OK ] NeighborhoodSearchTest.GridSearchNoPBC (2 ms) +30: [ OK ] NeighborhoodSearchTest.GridSearchNoPBC (10 ms) 30: [ RUN ] NeighborhoodSearchTest.GridSearchXYBox -30: [ OK ] NeighborhoodSearchTest.GridSearchXYBox (6 ms) +30: [ OK ] NeighborhoodSearchTest.GridSearchXYBox (2 ms) 30: [ RUN ] NeighborhoodSearchTest.SimpleSelfPairsSearch 30: [ OK ] NeighborhoodSearchTest.SimpleSelfPairsSearch (0 ms) 30: [ RUN ] NeighborhoodSearchTest.GridSelfPairsSearch -30: [ OK ] NeighborhoodSearchTest.GridSelfPairsSearch (56 ms) +30: [ OK ] NeighborhoodSearchTest.GridSelfPairsSearch (129 ms) 30: [ RUN ] NeighborhoodSearchTest.HandlesConcurrentSearches -30: [ OK ] NeighborhoodSearchTest.HandlesConcurrentSearches (1 ms) +30: [ OK ] NeighborhoodSearchTest.HandlesConcurrentSearches (0 ms) 30: [ RUN ] NeighborhoodSearchTest.HandlesNoPBC 30: [ OK ] NeighborhoodSearchTest.HandlesNoPBC (0 ms) 30: [ RUN ] NeighborhoodSearchTest.HandlesNullPBC @@ -126330,276 +126338,276 @@ 30: [ RUN ] NeighborhoodSearchTest.HandlesSkippingPairs 30: [ OK ] NeighborhoodSearchTest.HandlesSkippingPairs (0 ms) 30: [ RUN ] NeighborhoodSearchTest.SimpleSearchExclusions -30: [ OK ] NeighborhoodSearchTest.SimpleSearchExclusions (4 ms) +30: [ OK ] NeighborhoodSearchTest.SimpleSearchExclusions (3 ms) 30: [ RUN ] NeighborhoodSearchTest.GridSearchExclusions -30: [ OK ] NeighborhoodSearchTest.GridSearchExclusions (1 ms) -30: [----------] 15 tests from NeighborhoodSearchTest (154 ms total) +30: [ OK ] NeighborhoodSearchTest.GridSearchExclusions (9 ms) +30: [----------] 15 tests from NeighborhoodSearchTest (285 ms total) 30: 30: [----------] 12 tests from PositionCalculationTest 30: [ RUN ] PositionCalculationTest.ComputesAtomPositions -30: [ OK ] PositionCalculationTest.ComputesAtomPositions (3 ms) +30: [ OK ] PositionCalculationTest.ComputesAtomPositions (0 ms) 30: [ RUN ] PositionCalculationTest.ComputesResidueCOGPositions -30: [ OK ] PositionCalculationTest.ComputesResidueCOGPositions (1 ms) +30: [ OK ] PositionCalculationTest.ComputesResidueCOGPositions (0 ms) 30: [ RUN ] PositionCalculationTest.ComputesResidueCOMPositions 30: [ OK ] PositionCalculationTest.ComputesResidueCOMPositions (1 ms) 30: [ RUN ] PositionCalculationTest.ComputesGroupCOGPositions -30: [ OK ] PositionCalculationTest.ComputesGroupCOGPositions (3 ms) +30: [ OK ] PositionCalculationTest.ComputesGroupCOGPositions (0 ms) 30: [ RUN ] PositionCalculationTest.ComputesGroupCOMPositions -30: [ OK ] PositionCalculationTest.ComputesGroupCOMPositions (1 ms) +30: [ OK ] PositionCalculationTest.ComputesGroupCOMPositions (0 ms) 30: [ RUN ] PositionCalculationTest.ComputesPositionsWithCompleteWhole -30: [ OK ] PositionCalculationTest.ComputesPositionsWithCompleteWhole (17 ms) +30: [ OK ] PositionCalculationTest.ComputesPositionsWithCompleteWhole (0 ms) 30: [ RUN ] PositionCalculationTest.ComputesPositionsWithCompleteMax -30: [ OK ] PositionCalculationTest.ComputesPositionsWithCompleteMax (1 ms) +30: [ OK ] PositionCalculationTest.ComputesPositionsWithCompleteMax (0 ms) 30: [ RUN ] PositionCalculationTest.ComputesPositionMask 30: [ OK ] PositionCalculationTest.ComputesPositionMask (0 ms) 30: [ RUN ] PositionCalculationTest.HandlesFramesWithLessAtoms -30: [ OK ] PositionCalculationTest.HandlesFramesWithLessAtoms (0 ms) +30: [ OK ] PositionCalculationTest.HandlesFramesWithLessAtoms (1 ms) 30: [ RUN ] PositionCalculationTest.HandlesFramesWithLessAtoms2 -30: [ OK ] PositionCalculationTest.HandlesFramesWithLessAtoms2 (1 ms) +30: [ OK ] PositionCalculationTest.HandlesFramesWithLessAtoms2 (0 ms) 30: [ RUN ] PositionCalculationTest.HandlesIdenticalStaticCalculations -30: [ OK ] PositionCalculationTest.HandlesIdenticalStaticCalculations (6 ms) +30: [ OK ] PositionCalculationTest.HandlesIdenticalStaticCalculations (0 ms) 30: [ RUN ] PositionCalculationTest.HandlesOverlappingStaticCalculations 30: [ OK ] PositionCalculationTest.HandlesOverlappingStaticCalculations (0 ms) -30: [----------] 12 tests from PositionCalculationTest (36 ms total) +30: [----------] 12 tests from PositionCalculationTest (2 ms total) 30: 30: [----------] 29 tests from SelectionCollectionTest 30: [ RUN ] SelectionCollectionTest.HandlesNoSelections -30: [ OK ] SelectionCollectionTest.HandlesNoSelections (1 ms) +30: [ OK ] SelectionCollectionTest.HandlesNoSelections (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesNoSelectionsWithDefaultPositionType -30: [ OK ] SelectionCollectionTest.HandlesNoSelectionsWithDefaultPositionType (0 ms) +30: [ OK ] SelectionCollectionTest.HandlesNoSelectionsWithDefaultPositionType (1 ms) 30: [ RUN ] SelectionCollectionTest.HandlesVelocityAndForceRequests 30: [ OK ] SelectionCollectionTest.HandlesVelocityAndForceRequests (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesForceRequestForCenterOfGeometry -30: [ OK ] SelectionCollectionTest.HandlesForceRequestForCenterOfGeometry (1 ms) +30: [ OK ] SelectionCollectionTest.HandlesForceRequestForCenterOfGeometry (0 ms) 30: [ RUN ] SelectionCollectionTest.ParsesSelectionsFromFile 30: [ OK ] SelectionCollectionTest.ParsesSelectionsFromFile (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesAtypicalWhitespace -30: [ OK ] SelectionCollectionTest.HandlesAtypicalWhitespace (0 ms) +30: [ OK ] SelectionCollectionTest.HandlesAtypicalWhitespace (13 ms) 30: [ RUN ] SelectionCollectionTest.HandlesInvalidRegularExpressions -30: [ OK ] SelectionCollectionTest.HandlesInvalidRegularExpressions (1 ms) +30: [ OK ] SelectionCollectionTest.HandlesInvalidRegularExpressions (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesMissingMethodParamValue 30: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesMissingMethodParamValue2 -30: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue2 (0 ms) +30: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue2 (1 ms) 30: [ RUN ] SelectionCollectionTest.HandlesMissingMethodParamValue3 -30: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue3 (1 ms) +30: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue3 (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser1 30: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser1 (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser2 -30: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser2 (4 ms) +30: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser2 (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed1 -30: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed1 (0 ms) +30: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed1 (1 ms) 30: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed2 -30: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed2 (1 ms) +30: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed2 (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesUnsortedGroupReference 30: [ OK ] SelectionCollectionTest.HandlesUnsortedGroupReference (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesUnsortedGroupReferenceDelayed -30: [ OK ] SelectionCollectionTest.HandlesUnsortedGroupReferenceDelayed (1 ms) +30: [ OK ] SelectionCollectionTest.HandlesUnsortedGroupReferenceDelayed (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroup -30: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroup (0 ms) +30: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroup (1 ms) 30: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed 30: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed2 30: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed2 (0 ms) 30: [ RUN ] SelectionCollectionTest.RecoversFromMissingMoleculeInfo -30: [ OK ] SelectionCollectionTest.RecoversFromMissingMoleculeInfo (1 ms) +30: [ OK ] SelectionCollectionTest.RecoversFromMissingMoleculeInfo (0 ms) 30: [ RUN ] SelectionCollectionTest.RecoversFromMissingAtomTypes -30: [ OK ] SelectionCollectionTest.RecoversFromMissingAtomTypes (0 ms) +30: [ OK ] SelectionCollectionTest.RecoversFromMissingAtomTypes (13 ms) 30: [ RUN ] SelectionCollectionTest.RecoversFromMissingPDBInfo 30: [ OK ] SelectionCollectionTest.RecoversFromMissingPDBInfo (0 ms) 30: [ RUN ] SelectionCollectionTest.RecoversFromInvalidPermutation -30: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation (1 ms) +30: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation (0 ms) 30: [ RUN ] SelectionCollectionTest.RecoversFromInvalidPermutation2 -30: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation2 (0 ms) +30: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation2 (1 ms) 30: [ RUN ] SelectionCollectionTest.RecoversFromInvalidPermutation3 30: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation3 (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets 30: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets2 -30: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets2 (1 ms) +30: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets2 (0 ms) 30: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets3 -30: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets3 (0 ms) +30: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets3 (1 ms) 30: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets4 -30: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets4 (13 ms) -30: [----------] 29 tests from SelectionCollectionTest (26 ms total) +30: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets4 (0 ms) +30: [----------] 29 tests from SelectionCollectionTest (32 ms total) 30: 30: [----------] 14 tests from SelectionCollectionInteractiveTest 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesBasicInput -30: [ OK ] SelectionCollectionInteractiveTest.HandlesBasicInput (1 ms) +30: [ OK ] SelectionCollectionInteractiveTest.HandlesBasicInput (0 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesContinuation -30: [ OK ] SelectionCollectionInteractiveTest.HandlesContinuation (7 ms) +30: [ OK ] SelectionCollectionInteractiveTest.HandlesContinuation (1 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInput -30: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInput (1 ms) +30: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInput (0 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInput -30: [ OK ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInput (1 ms) +30: [ OK ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInput (0 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesStatusWithGroups -30: [ OK ] SelectionCollectionInteractiveTest.HandlesStatusWithGroups (0 ms) +30: [ OK ] SelectionCollectionInteractiveTest.HandlesStatusWithGroups (13 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesStatusWithExistingSelections -30: [ OK ] SelectionCollectionInteractiveTest.HandlesStatusWithExistingSelections (14 ms) +30: [ OK ] SelectionCollectionInteractiveTest.HandlesStatusWithExistingSelections (0 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputStatus -30: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputStatus (0 ms) +30: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputStatus (1 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInputStatus -30: [ OK ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInputStatus (1 ms) +30: [ OK ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInputStatus (0 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesMultiSelectionInputStatus -30: [ OK ] SelectionCollectionInteractiveTest.HandlesMultiSelectionInputStatus (7 ms) +30: [ OK ] SelectionCollectionInteractiveTest.HandlesMultiSelectionInputStatus (0 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesNoFinalNewline -30: [ OK ] SelectionCollectionInteractiveTest.HandlesNoFinalNewline (8 ms) +30: [ OK ] SelectionCollectionInteractiveTest.HandlesNoFinalNewline (1 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesEmptySelections 30: [ OK ] SelectionCollectionInteractiveTest.HandlesEmptySelections (0 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesMultipleSelectionsOnLine -30: [ OK ] SelectionCollectionInteractiveTest.HandlesMultipleSelectionsOnLine (20 ms) +30: [ OK ] SelectionCollectionInteractiveTest.HandlesMultipleSelectionsOnLine (0 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesNoninteractiveInput -30: [ OK ] SelectionCollectionInteractiveTest.HandlesNoninteractiveInput (1 ms) +30: [ OK ] SelectionCollectionInteractiveTest.HandlesNoninteractiveInput (0 ms) 30: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputNoninteractively -30: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputNoninteractively (0 ms) -30: [----------] 14 tests from SelectionCollectionInteractiveTest (61 ms total) +30: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputNoninteractively (1 ms) +30: [----------] 14 tests from SelectionCollectionInteractiveTest (17 ms total) 30: 30: [----------] 66 tests from SelectionCollectionDataTest 30: [ RUN ] SelectionCollectionDataTest.HandlesAllNone -30: [ OK ] SelectionCollectionDataTest.HandlesAllNone (7 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesAllNone (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesAtomnr -30: [ OK ] SelectionCollectionDataTest.HandlesAtomnr (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesAtomnr (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesResnr -30: [ OK ] SelectionCollectionDataTest.HandlesResnr (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesResnr (5 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesResIndex -30: [ OK ] SelectionCollectionDataTest.HandlesResIndex (6 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesResIndex (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesMolIndex -30: [ OK ] SelectionCollectionDataTest.HandlesMolIndex (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesMolIndex (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesAtomname 30: [ OK ] SelectionCollectionDataTest.HandlesAtomname (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesPdbAtomname -30: [ OK ] SelectionCollectionDataTest.HandlesPdbAtomname (19 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesPdbAtomname (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesAtomtype 30: [ OK ] SelectionCollectionDataTest.HandlesAtomtype (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesChain -30: [ OK ] SelectionCollectionDataTest.HandlesChain (2 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesChain (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesMass 30: [ OK ] SelectionCollectionDataTest.HandlesMass (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesCharge -30: [ OK ] SelectionCollectionDataTest.HandlesCharge (6 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesCharge (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesAltLoc -30: [ OK ] SelectionCollectionDataTest.HandlesAltLoc (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesAltLoc (13 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesInsertCode -30: [ OK ] SelectionCollectionDataTest.HandlesInsertCode (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesInsertCode (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesOccupancy -30: [ OK ] SelectionCollectionDataTest.HandlesOccupancy (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesOccupancy (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesBeta -30: [ OK ] SelectionCollectionDataTest.HandlesBeta (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesBeta (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesResname -30: [ OK ] SelectionCollectionDataTest.HandlesResname (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesResname (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesCoordinateKeywords -30: [ OK ] SelectionCollectionDataTest.HandlesCoordinateKeywords (2 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesCoordinateKeywords (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesSameResidue 30: [ OK ] SelectionCollectionDataTest.HandlesSameResidue (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesSameResidueName -30: [ OK ] SelectionCollectionDataTest.HandlesSameResidueName (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesSameResidueName (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesPositionKeywords -30: [ OK ] SelectionCollectionDataTest.HandlesPositionKeywords (5 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesPositionKeywords (9 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesDistanceKeyword -30: [ OK ] SelectionCollectionDataTest.HandlesDistanceKeyword (3 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesDistanceKeyword (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesMinDistanceKeyword -30: [ OK ] SelectionCollectionDataTest.HandlesMinDistanceKeyword (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesMinDistanceKeyword (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesWithinKeyword -30: [ OK ] SelectionCollectionDataTest.HandlesWithinKeyword (3 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesWithinKeyword (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesInSolidAngleKeyword -30: [ OK ] SelectionCollectionDataTest.HandlesInSolidAngleKeyword (72 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesInSolidAngleKeyword (11 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesPermuteModifier -30: [ OK ] SelectionCollectionDataTest.HandlesPermuteModifier (33 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesPermuteModifier (2 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesPlusModifier -30: [ OK ] SelectionCollectionDataTest.HandlesPlusModifier (5 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesPlusModifier (9 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesMergeModifier -30: [ OK ] SelectionCollectionDataTest.HandlesMergeModifier (3 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesMergeModifier (1 ms) 30: [ RUN ] SelectionCollectionDataTest.ComputesMassesAndCharges -30: [ OK ] SelectionCollectionDataTest.ComputesMassesAndCharges (4 ms) +30: [ OK ] SelectionCollectionDataTest.ComputesMassesAndCharges (1 ms) 30: [ RUN ] SelectionCollectionDataTest.ComputesMassesAndChargesWithoutTopology -30: [ OK ] SelectionCollectionDataTest.ComputesMassesAndChargesWithoutTopology (0 ms) +30: [ OK ] SelectionCollectionDataTest.ComputesMassesAndChargesWithoutTopology (13 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesFramesWithAtomSubsets -30: [ OK ] SelectionCollectionDataTest.HandlesFramesWithAtomSubsets (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesFramesWithAtomSubsets (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesSelectionNames -30: [ OK ] SelectionCollectionDataTest.HandlesSelectionNames (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesSelectionNames (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesIndexGroupsInSelections -30: [ OK ] SelectionCollectionDataTest.HandlesIndexGroupsInSelections (5 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesIndexGroupsInSelections (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesIndexGroupsInSelectionsDelayed 30: [ OK ] SelectionCollectionDataTest.HandlesIndexGroupsInSelectionsDelayed (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelections -30: [ OK ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelections (4 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelections (13 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelectionsDelayed -30: [ OK ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelectionsDelayed (3 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelectionsDelayed (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositions -30: [ OK ] SelectionCollectionDataTest.HandlesConstantPositions (4 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesConstantPositions (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositionsWithModifiers -30: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionsWithModifiers (4 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionsWithModifiers (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesWithinConstantPositions 30: [ OK ] SelectionCollectionDataTest.HandlesWithinConstantPositions (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesOverlappingIntegerRanges -30: [ OK ] SelectionCollectionDataTest.HandlesOverlappingIntegerRanges (3 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesOverlappingIntegerRanges (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesOverlappingRealRanges 30: [ OK ] SelectionCollectionDataTest.HandlesOverlappingRealRanges (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesForcedStringMatchingMode -30: [ OK ] SelectionCollectionDataTest.HandlesForcedStringMatchingMode (3 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesForcedStringMatchingMode (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesWildcardMatching -30: [ OK ] SelectionCollectionDataTest.HandlesWildcardMatching (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesWildcardMatching (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesRegexMatching -30: [ OK ] SelectionCollectionDataTest.HandlesRegexMatching (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesRegexMatching (9 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesBasicBoolean -30: [ OK ] SelectionCollectionDataTest.HandlesBasicBoolean (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesBasicBoolean (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesDynamicAtomValuedParameters -30: [ OK ] SelectionCollectionDataTest.HandlesDynamicAtomValuedParameters (2 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesDynamicAtomValuedParameters (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesEmptySelectionWithUnevaluatedExpressions 30: [ OK ] SelectionCollectionDataTest.HandlesEmptySelectionWithUnevaluatedExpressions (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesEmptyReferenceForSame -30: [ OK ] SelectionCollectionDataTest.HandlesEmptyReferenceForSame (3 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesEmptyReferenceForSame (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesPositionModifiersForKeywords 30: [ OK ] SelectionCollectionDataTest.HandlesPositionModifiersForKeywords (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesPositionModifiersForMethods -30: [ OK ] SelectionCollectionDataTest.HandlesPositionModifiersForMethods (3 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesPositionModifiersForMethods (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesKeywordOfPositions -30: [ OK ] SelectionCollectionDataTest.HandlesKeywordOfPositions (4 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesKeywordOfPositions (9 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesKeywordOfPositionsInArithmetic -30: [ OK ] SelectionCollectionDataTest.HandlesKeywordOfPositionsInArithmetic (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesKeywordOfPositionsInArithmetic (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesNumericComparisons -30: [ OK ] SelectionCollectionDataTest.HandlesNumericComparisons (4 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesNumericComparisons (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesArithmeticExpressions -30: [ OK ] SelectionCollectionDataTest.HandlesArithmeticExpressions (4 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesArithmeticExpressions (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesNumericVariables 30: [ OK ] SelectionCollectionDataTest.HandlesNumericVariables (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesComplexNumericVariables -30: [ OK ] SelectionCollectionDataTest.HandlesComplexNumericVariables (3 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesComplexNumericVariables (9 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesPositionVariables 30: [ OK ] SelectionCollectionDataTest.HandlesPositionVariables (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesPositionVariableInModifier -30: [ OK ] SelectionCollectionDataTest.HandlesPositionVariableInModifier (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesPositionVariableInModifier (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositionInVariable -30: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionInVariable (13 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionInVariable (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesNumericConstantsInVariables -30: [ OK ] SelectionCollectionDataTest.HandlesNumericConstantsInVariables (5 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesNumericConstantsInVariables (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysis -30: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysis (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysis (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithVariables -30: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithVariables (0 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithVariables (13 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithMoreVariables -30: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithMoreVariables (2 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithMoreVariables (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesUnusedVariables -30: [ OK ] SelectionCollectionDataTest.HandlesUnusedVariables (1 ms) +30: [ OK ] SelectionCollectionDataTest.HandlesUnusedVariables (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithStaticEvaluationGroups 30: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithStaticEvaluationGroups (0 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups 30: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups (1 ms) 30: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups2 -30: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups2 (1 ms) -30: [----------] 66 tests from SelectionCollectionDataTest (266 ms total) +30: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups2 (0 ms) +30: [----------] 66 tests from SelectionCollectionDataTest (143 ms total) 30: 30: [----------] 17 tests from SelectionOptionTest 30: [ RUN ] SelectionOptionTest.ParsesSimpleSelection -30: [ OK ] SelectionOptionTest.ParsesSimpleSelection (0 ms) +30: [ OK ] SelectionOptionTest.ParsesSimpleSelection (1 ms) 30: [ RUN ] SelectionOptionTest.HandlesDynamicSelectionWhenStaticRequired 30: [ OK ] SelectionOptionTest.HandlesDynamicSelectionWhenStaticRequired (0 ms) 30: [ RUN ] SelectionOptionTest.HandlesNonAtomicSelectionWhenAtomsRequired -30: [ OK ] SelectionOptionTest.HandlesNonAtomicSelectionWhenAtomsRequired (5 ms) +30: [ OK ] SelectionOptionTest.HandlesNonAtomicSelectionWhenAtomsRequired (0 ms) 30: [ RUN ] SelectionOptionTest.ChecksForSortedAtomsWhenRequired 30: [ OK ] SelectionOptionTest.ChecksForSortedAtomsWhenRequired (0 ms) 30: [ RUN ] SelectionOptionTest.ChecksEmptySelections -30: [ OK ] SelectionOptionTest.ChecksEmptySelections (1 ms) +30: [ OK ] SelectionOptionTest.ChecksEmptySelections (9 ms) 30: [ RUN ] SelectionOptionTest.ChecksEmptyDelayedSelections 30: [ OK ] SelectionOptionTest.ChecksEmptyDelayedSelections (0 ms) 30: [ RUN ] SelectionOptionTest.HandlesTooManySelections @@ -126615,16 +126623,16 @@ 30: [ RUN ] SelectionOptionTest.HandlesTooManySelectionsWithAdjuster 30: [ OK ] SelectionOptionTest.HandlesTooManySelectionsWithAdjuster (0 ms) 30: [ RUN ] SelectionOptionTest.HandlesTooFewSelectionsWithAdjuster -30: [ OK ] SelectionOptionTest.HandlesTooFewSelectionsWithAdjuster (1 ms) +30: [ OK ] SelectionOptionTest.HandlesTooFewSelectionsWithAdjuster (0 ms) 30: [ RUN ] SelectionOptionTest.HandlesDelayedRequiredSelection 30: [ OK ] SelectionOptionTest.HandlesDelayedRequiredSelection (0 ms) 30: [ RUN ] SelectionOptionTest.HandlesTooFewDelayedRequiredSelections -30: [ OK ] SelectionOptionTest.HandlesTooFewDelayedRequiredSelections (0 ms) +30: [ OK ] SelectionOptionTest.HandlesTooFewDelayedRequiredSelections (1 ms) 30: [ RUN ] SelectionOptionTest.HandlesDelayedOptionalSelection 30: [ OK ] SelectionOptionTest.HandlesDelayedOptionalSelection (0 ms) 30: [ RUN ] SelectionOptionTest.HandlesDelayedSelectionWithAdjuster -30: [ OK ] SelectionOptionTest.HandlesDelayedSelectionWithAdjuster (5 ms) -30: [----------] 17 tests from SelectionOptionTest (13 ms total) +30: [ OK ] SelectionOptionTest.HandlesDelayedSelectionWithAdjuster (0 ms) +30: [----------] 17 tests from SelectionOptionTest (12 ms total) 30: 30: [----------] 9 tests from SelectionFileOptionTest 30: [ RUN ] SelectionFileOptionTest.HandlesSingleSelectionOptionFromFile @@ -126640,26 +126648,26 @@ 30: [ RUN ] SelectionFileOptionTest.HandlesTwoRequiredOptionsFromSingleFile 30: [ OK ] SelectionFileOptionTest.HandlesTwoRequiredOptionsFromSingleFile (0 ms) 30: [ RUN ] SelectionFileOptionTest.GivesErrorWithNoFile -30: [ OK ] SelectionFileOptionTest.GivesErrorWithNoFile (1 ms) +30: [ OK ] SelectionFileOptionTest.GivesErrorWithNoFile (0 ms) 30: [ RUN ] SelectionFileOptionTest.GivesErrorWithNonExistentFile 30: [ OK ] SelectionFileOptionTest.GivesErrorWithNonExistentFile (0 ms) 30: [ RUN ] SelectionFileOptionTest.GivesErrorWithMultipleFiles -30: [ OK ] SelectionFileOptionTest.GivesErrorWithMultipleFiles (0 ms) -30: [----------] 9 tests from SelectionFileOptionTest (2 ms total) +30: [ OK ] SelectionFileOptionTest.GivesErrorWithMultipleFiles (9 ms) +30: [----------] 9 tests from SelectionFileOptionTest (10 ms total) 30: 30: [----------] Global test environment tear-down -30: [==========] 192 tests from 11 test cases ran. (662 ms total) +30: [==========] 192 tests from 11 test cases ran. (504 ms total) 30: [ PASSED ] 192 tests. -30/30 Test #30: SelectionUnitTests ............... Passed 1.79 sec +30/30 Test #30: SelectionUnitTests ............... Passed 1.71 sec 100% tests passed, 0 tests failed out of 30 Label Time Summary: -GTest = 48.36 sec*proc (30 tests) -MpiTest = 4.69 sec*proc (3 tests) -UnitTest = 48.36 sec*proc (30 tests) +GTest = 40.83 sec*proc (30 tests) +MpiTest = 4.65 sec*proc (3 tests) +UnitTest = 40.83 sec*proc (30 tests) -Total Test time (real) = 48.84 sec +Total Test time (real) = 41.17 sec touch build-openmpi dh_testdir # Build speedy, stripped-down version just for documentation generation. @@ -126878,7 +126886,7 @@ -- Configuring done -- Generating done -- Build files have been written to: /build/reproducible-path/gromacs-2020.6/build/documentation -/usr/bin/make -j16 gmx -C build/documentation +/usr/bin/make -j15 gmx -C build/documentation make[1]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' /usr/bin/cmake -S/build/reproducible-path/gromacs-2020.6 -B/build/reproducible-path/gromacs-2020.6/build/documentation --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/make -f CMakeFiles/Makefile2 gmx @@ -126889,185 +126897,185 @@ make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend +Scanning dependencies of target mdrun_objlib make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_zlib.dir/build.make src/gromacs/CMakeFiles/tng_io_zlib.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -Scanning dependencies of target mdrun_objlib -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/tng_io_zlib.dir/DependInfo.cmake --color= -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= -Scanning dependencies of target release-version-info make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/tng_io_zlib.dir/DependInfo.cmake --color= /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= -/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -fno-inline -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/mdrun.cpp cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -fno-inline -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/mdrun/nonbonded_bench.cpp +Scanning dependencies of target release-version-info +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend Scanning dependencies of target scanner +/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend +Scanning dependencies of target tng_io_obj make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/documentation/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/documentation/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake -Scanning dependencies of target lmfit_objlib /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= -Scanning dependencies of target tng_io_obj +cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/documentation/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/documentation/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/selection && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/parser.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/parser.cpp cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/selection && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -std=c++14 -o CMakeFiles/scanner.dir/scanner.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/selection/scanner.cpp +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend +Scanning dependencies of target tng_io_zlib make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build -cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/documentation/tng/include -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwlzh.c make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -std=c++14 -o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/lmfit/lmmin.cpp +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/documentation/tng/include -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwlzh.c /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend -cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/documentation/tng/include -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwt.c -Scanning dependencies of target linearalgebra -Scanning dependencies of target tng_io_zlib make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build -cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/documentation/tng/include -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/coder.c -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_zlib.dir/build.make src/gromacs/CMakeFiles/tng_io_zlib.dir/build cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/modularsimulator 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/build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/documentation/tng/include -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/bwt.c +cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/documentation/tng/include -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/coder.c make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +Scanning dependencies of target lmfit_objlib /usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/adler32.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib/adler32.c cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/documentation/tng/include -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/dict.c make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/documentation/tng/include -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/fixpoint.c make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/fileio/CMakeFiles/vmddlopen.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -std=c++14 -o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/lmfit/lmmin.cpp +Scanning dependencies of target linearalgebra Scanning dependencies of target thread_mpi -[ 0%] Built target release-version-info make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build Scanning dependencies of target vmddlopen +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build -Scanning dependencies of target modularsimulator make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/errhandler.cpp +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra/eigensolver.cpp +[ 0%] Built target release-version-info +/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/fileio && /usr/bin/c++ -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -std=c++14 -o CMakeFiles/vmddlopen.dir/__/__/external/vmd_molfile/vmddlopen.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/vmd_molfile/vmddlopen.cpp -cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -std=c++14 -o 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src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/checkpointhelper.cpp -cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/documentation/tng/include -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/huffman.c -cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/documentation/tng/include -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/huffmem.c +cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/documentation/tng/include -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/fixpoint.c Scanning dependencies of target view_objlib make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -fno-inline -std=c++14 -o CMakeFiles/view_objlib.dir/view/view.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/programs/view/view.cpp -[ 0%] Built target vmddlopen -cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/compositesimulatorelement.cpp +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/compress.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib/compress.c +[ 0%] Built target vmddlopen +cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/crc32.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib/crc32.c +cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/documentation/tng/include 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/huffmem.c cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/tmpi_malloc.cpp +cd 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/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib/crc32.c +cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/atomic.cpp +cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/inffast.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib/inffast.c cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/documentation/tng/include -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/merge_sort.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/merge_sort.c +cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/lock.cpp cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/documentation/tng/include -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/mtf.c.o -c /build/reproducible-path/gromacs-2020.6/src/external/tng_io/src/compression/mtf.c -cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/atomic.cpp cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/include -I/build/reproducible-path/gromacs-2020.6/build/documentation/tng/include -I/build/reproducible-path/gromacs-2020.6/src/external/tng_io/external/zlib -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security 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/build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/forceelement.cpp +[ 0%] Built target tng_io_zlib cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/collective.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/src/collective.cpp cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src 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/build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/topologyholder.cpp -cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/trajectoryelement.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -[ 0%] Built target mdrun_objlib +[ 3%] Built target thread_mpi +cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/trajectoryelement.cpp cd /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/build/reproducible-path/gromacs-2020.6/build/documentation/src -I/build/reproducible-path/gromacs-2020.6/src -isystem /build/reproducible-path/gromacs-2020.6/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/build/reproducible-path/gromacs-2020.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fPIC -Wno-unknown-pragmas -fno-inline -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/vrescalethermostat.cpp.o -c /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator/vrescalethermostat.cpp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -[ 0%] Built target linearalgebra -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -[ 3%] Built target thread_mpi +[ 3%] Built target linearalgebra make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' [ 3%] Built target scanner make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' @@ -127864,7 +127872,7 @@ make[2]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[1]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' # Generate PDF -/usr/bin/make -j16 manual -C build/documentation +/usr/bin/make -j15 manual -C build/documentation make[1]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' /usr/bin/cmake -S/build/reproducible-path/gromacs-2020.6 -B/build/reproducible-path/gromacs-2020.6/build/documentation --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/make -f CMakeFiles/Makefile2 manual @@ -127889,7 +127897,7 @@ make[2]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[1]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' # Generate man pages -/usr/bin/make -j16 man -C build/documentation +/usr/bin/make -j15 man -C build/documentation make[1]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' /usr/bin/cmake -S/build/reproducible-path/gromacs-2020.6 -B/build/reproducible-path/gromacs-2020.6/build/documentation --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/make -f CMakeFiles/Makefile2 man @@ -127899,9 +127907,9 @@ /usr/bin/make -f CMakeFiles/Makefile2 docs/CMakeFiles/man.dir/all make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend -/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= @@ -127912,47 +127920,58 @@ make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/tng_io_zlib.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +make[4]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/documentation/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/documentation/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_zlib.dir/build.make src/gromacs/CMakeFiles/tng_io_zlib.dir/build +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_zlib.dir/build.make src/gromacs/CMakeFiles/tng_io_zlib.dir/build -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_zlib.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -[ 0%] Built target mdrun_objlib +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -[ 2%] Built target tng_io_obj -[ 2%] Built target scanner -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend -[ 2%] Built target tng_io_zlib make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend -[ 2%] Built target release-version-info -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +[ 0%] Built target mdrun_objlib +[ 0%] Built target scanner +[ 0%] Built target tng_io_zlib +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend +[ 0%] Built target release-version-info +[ 2%] Built target lmfit_objlib make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend +[ 2%] Built target tng_io_obj /usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= @@ -127963,82 +127982,71 @@ cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= /usr/bin/make -f docs/CMakeFiles/sphinx-input-rst.dir/build.make docs/CMakeFiles/sphinx-input-rst.dir/depend make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +[ 5%] Built target thread_mpi make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/docs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/docs /build/reproducible-path/gromacs-2020.6/build/documentation/docs/CMakeFiles/sphinx-input-rst.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +/usr/bin/make -f docs/CMakeFiles/sphinx-image-conversion.dir/build.make docs/CMakeFiles/sphinx-image-conversion.dir/depend make[4]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/docs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/docs /build/reproducible-path/gromacs-2020.6/build/documentation/docs/CMakeFiles/sphinx-image-conversion.dir/DependInfo.cmake --color= +Scanning dependencies of target sphinx-input-rst make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +/usr/bin/make -f docs/CMakeFiles/sphinx-input-rst.dir/build.make docs/CMakeFiles/sphinx-input-rst.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. +cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/reference-manual/plots/xvgr.png /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/reference-manual/plots/xvgr.png make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -[ 2%] Built target lmfit_objlib +Scanning dependencies of target sphinx-image-conversion /usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -Scanning dependencies of target sphinx-input-rst -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +[ 5%] Built target linearalgebra +cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -D VERSION_VARIABLES=/build/reproducible-path/gromacs-2020.6/build/documentation/VersionInfo.cmake -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/docs/conf-vars.py.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/conf-vars.py -D SPHINX_EXTENSION_PATH=/build/reproducible-path/gromacs-2020.6/docs -D RELENG_PATH= -D IMAGE_CONVERT_STRING=impossible -D EXPECTED_DOXYGEN_VERSION=1.8.5 -D EXPECTED_SPHINX_VERSION=1.6.1 -D CMAKE_MINIMUM_REQUIRED_VERSION=3.9.6 -D REQUIRED_CUDA_VERSION=9.0 -D REQUIRED_OPENCL_MIN_VERSION=1.2 -D REQUIRED_CUDA_COMPUTE_CAPABILITY=3.0 -D REGRESSIONTEST_VERSION=2020.6-Debian-2020.6-2 -D SOURCE_MD5SUM=unknown -D REGRESSIONTEST_MD5SUM_STRING=unknown -D GMX_TNG_MINIMUM_REQUIRED_VERSION=1.7.10 -D GMX_LMFIT_REQUIRED_VERSION=7.0 -D "GMX_MANUAL_DOI_STRING=This is not a release build of GROMACS, so please reference one of the GROMACS papers and the base release of the manual." -D "GMX_SOURCE_DOI_STRING=This is not a release build of GROMACS. Please reference one of the GROMACS papers, as well as the base release that this version is built from. Also, please state what modifcations have been performed or where the version was sourced from." -D GMXAPI_PYTHON_STAGING_DIR= -P /build/reproducible-path/gromacs-2020.6/cmake/gmxConfigureVersionInfo.cmake make[4]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/index.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/index.rst +cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/download.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/download.rst /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Nothing to be done for 'src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -[ 2%] Built target linearalgebra -/usr/bin/make -f docs/CMakeFiles/sphinx-input-rst.dir/build.make docs/CMakeFiles/sphinx-input-rst.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Nothing to be done for 'src/programs/CMakeFiles/view_objlib.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/reference-manual/plots/xvgr.png /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/reference-manual/plots/xvgr.png -cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -D VERSION_VARIABLES=/build/reproducible-path/gromacs-2020.6/build/documentation/VersionInfo.cmake -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/docs/conf-vars.py.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/conf-vars.py -D SPHINX_EXTENSION_PATH=/build/reproducible-path/gromacs-2020.6/docs -D RELENG_PATH= -D IMAGE_CONVERT_STRING=impossible -D EXPECTED_DOXYGEN_VERSION=1.8.5 -D EXPECTED_SPHINX_VERSION=1.6.1 -D CMAKE_MINIMUM_REQUIRED_VERSION=3.9.6 -D REQUIRED_CUDA_VERSION=9.0 -D REQUIRED_OPENCL_MIN_VERSION=1.2 -D REQUIRED_CUDA_COMPUTE_CAPABILITY=3.0 -D REGRESSIONTEST_VERSION=2020.6-Debian-2020.6-2 -D SOURCE_MD5SUM=unknown -D REGRESSIONTEST_MD5SUM_STRING=unknown -D GMX_TNG_MINIMUM_REQUIRED_VERSION=1.7.10 -D GMX_LMFIT_REQUIRED_VERSION=7.0 -D "GMX_MANUAL_DOI_STRING=This is not a release build of GROMACS, so please reference one of the GROMACS papers and the base release of the manual." -D "GMX_SOURCE_DOI_STRING=This is not a release build of GROMACS. Please reference one of the GROMACS papers, as well as the base release that this version is built from. Also, please state what modifcations have been performed or where the version was sourced from." -D GMXAPI_PYTHON_STAGING_DIR= -P /build/reproducible-path/gromacs-2020.6/cmake/gmxConfigureVersionInfo.cmake -cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/index.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/index.rst -cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/download.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/download.rst +/usr/bin/make -f docs/CMakeFiles/sphinx-image-conversion.dir/build.make docs/CMakeFiles/sphinx-image-conversion.dir/build cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/conf.py /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/conf.py -/usr/bin/make -f docs/CMakeFiles/sphinx-image-conversion.dir/build.make docs/CMakeFiles/sphinx-image-conversion.dir/depend -[ 5%] Built target thread_mpi make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/docs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/docs /build/reproducible-path/gromacs-2020.6/build/documentation/docs/CMakeFiles/sphinx-image-conversion.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E touch /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-image-conversion-timestamp.txt cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E touch /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/conf-vars.py cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/links.dat /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/links.dat cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/dev-manual/build-system.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/dev-manual/build-system.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/dev-manual/change-management.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/dev-manual/change-management.rst -cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/dev-manual/commitstyle.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/dev-manual/commitstyle.rst -cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/dev-manual/documentation-generation.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/dev-manual/documentation-generation.rst -[ 5%] Built target vmddlopen [ 7%] Built target modularsimulator -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/dev-manual/commitstyle.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/dev-manual/commitstyle.rst +[ 7%] Built target vmddlopen +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' [ 7%] Built target view_objlib +cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/dev-manual/documentation-generation.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/dev-manual/documentation-generation.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/dev-manual/contribute.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/dev-manual/contribute.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/dev-manual/doxygen.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/dev-manual/doxygen.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/dev-manual/error-handling.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/dev-manual/error-handling.rst +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/dev-manual/formatting.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/dev-manual/formatting.rst -Scanning dependencies of target sphinx-image-conversion -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f docs/CMakeFiles/sphinx-image-conversion.dir/build.make docs/CMakeFiles/sphinx-image-conversion.dir/build +[ 7%] Built target sphinx-image-conversion cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/dev-manual/gmxtree.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/dev-manual/gmxtree.rst -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E touch /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-image-conversion-timestamp.txt cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/dev-manual/includestyle.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/dev-manual/includestyle.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/dev-manual/index.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/dev-manual/index.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/dev-manual/jenkins.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/dev-manual/jenkins.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/dev-manual/known-issues.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/dev-manual/known-issues.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/dev-manual/language-features.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/dev-manual/language-features.rst -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/dev-manual/naming.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/dev-manual/naming.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/dev-manual/overview.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/dev-manual/overview.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/dev-manual/physical_validation.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/dev-manual/physical_validation.rst -[ 7%] Built target sphinx-image-conversion cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/dev-manual/redmine-states.png /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/dev-manual/redmine-states.png cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/dev-manual/relocatable-binaries.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/dev-manual/relocatable-binaries.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/dev-manual/reportstyle.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/dev-manual/reportstyle.rst @@ -128065,8 +128073,6 @@ cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/release-notes/2020/major/performance.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/release-notes/2020/major/performance.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/release-notes/2020/major/tools.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/release-notes/2020/major/tools.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/release-notes/2020/major/bugs-fixed.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/release-notes/2020/major/bugs-fixed.rst -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/release-notes/2020/major/removed-functionality.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/release-notes/2020/major/removed-functionality.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/release-notes/2020/major/deprecated-functionality.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/release-notes/2020/major/deprecated-functionality.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/release-notes/2020/major/portability.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/release-notes/2020/major/portability.rst @@ -128078,8 +128084,6 @@ cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/release-notes/2019/2019.2.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/release-notes/2019/2019.2.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/release-notes/2019/2019.1.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/release-notes/2019/2019.1.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/release-notes/2019/major/highlights.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/release-notes/2019/major/highlights.rst -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/release-notes/2019/major/features.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/release-notes/2019/major/features.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/release-notes/2019/major/performance.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/release-notes/2019/major/performance.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/release-notes/2019/major/tools.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/release-notes/2019/major/tools.rst @@ -128105,6 +128109,8 @@ cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/release-notes/2018/major/miscellaneous.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/release-notes/2018/major/miscellaneous.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/release-notes/2016/2016.5.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/release-notes/2016/2016.5.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/release-notes/2016/2016.4.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/release-notes/2016/2016.4.rst +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/release-notes/2016/2016.3.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/release-notes/2016/2016.3.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/release-notes/2016/2016.2.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/release-notes/2016/2016.2.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/release-notes/2016/2016.1.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/release-notes/2016/2016.1.rst @@ -128114,6 +128120,8 @@ cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/release-notes/2016/major/tools.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/release-notes/2016/major/tools.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/release-notes/2016/major/bugs-fixed.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/release-notes/2016/major/bugs-fixed.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/release-notes/2016/major/removed-features.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/release-notes/2016/major/removed-features.rst +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/release-notes/2016/major/miscellaneous.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/release-notes/2016/major/miscellaneous.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/release-notes/older/index.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/release-notes/older/index.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/user-guide/cmdline.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/user-guide/cmdline.rst @@ -128145,45 +128153,45 @@ cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/reference-manual/definitions.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/reference-manual/definitions.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/reference-manual/topologies.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/reference-manual/topologies.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/reference-manual/topologies/particle-type.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/reference-manual/topologies/particle-type.rst -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/reference-manual/topologies/parameter-files.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/reference-manual/topologies/parameter-files.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/reference-manual/topologies/molecule-definition.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/reference-manual/topologies/molecule-definition.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/reference-manual/topologies/constraint-algorithm-section.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/reference-manual/topologies/constraint-algorithm-section.rst -[ 83%] Built target libgromacs cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/reference-manual/topologies/pdb2gmx-input-files.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/reference-manual/topologies/pdb2gmx-input-files.rst -/usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/reference-manual/topologies/topology-file-formats.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/reference-manual/topologies/topology-file-formats.rst -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake --color= cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/reference-manual/topologies/force-field-organization.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/reference-manual/topologies/force-field-organization.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/reference-manual/file-formats.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/reference-manual/file-formats.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/reference-manual/run-parameters.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/reference-manual/run-parameters.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/reference-manual/details.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/reference-manual/details.rst cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/reference-manual/averages.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/reference-manual/averages.rst -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/reference-manual/references.rst /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/reference-manual/references.rst -/usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Nothing to be done for 'src/programs/CMakeFiles/gmx.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/reference-manual/plots/peregrine.png /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/reference-manual/plots/peregrine.png cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/reference-manual/plots/adress.png /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/reference-manual/plots/adress.png cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E copy /build/reproducible-path/gromacs-2020.6/docs/reference-manual/plots/plotje.png /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/reference-manual/plots/plotje.png -[ 85%] Built target gmx cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E touch /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input-rst-timestamp.txt +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -[ 98%] Built target sphinx-input-rst +[ 83%] Built target libgromacs +/usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake --color= +[ 97%] Built target sphinx-input-rst /usr/bin/make -f docs/CMakeFiles/sphinx-input.dir/build.make docs/CMakeFiles/sphinx-input.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/docs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/docs /build/reproducible-path/gromacs-2020.6/build/documentation/docs/CMakeFiles/sphinx-input.dir/DependInfo.cmake --color= +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +/usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +make[4]: Nothing to be done for 'src/programs/CMakeFiles/gmx.dir/build'. +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' Scanning dependencies of target sphinx-input make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' /usr/bin/make -f docs/CMakeFiles/sphinx-input.dir/build.make docs/CMakeFiles/sphinx-input.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Nothing to be done for 'docs/CMakeFiles/sphinx-input.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +[ 98%] Built target gmx [ 98%] Built target sphinx-input /usr/bin/make -f docs/CMakeFiles/sphinx-programs.dir/build.make docs/CMakeFiles/sphinx-programs.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' @@ -128207,7 +128215,7 @@ cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/sphinx-build -q -b man -w sphinx-man.log -d /build/reproducible-path/gromacs-2020.6/build/documentation/docs/_doctrees -t do_man /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input /build/reproducible-path/gromacs-2020.6/build/documentation/docs/man WARNING: html_static_path entry '_static' does not exist WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://docs.python.org/3/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.python.org', port=443): Max retries exceeded with url: /3/objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution')) +intersphinx inventory 'https://docs.python.org/3/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.python.org', port=443): Max retries exceeded with url: /3/objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution')) /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/reference-manual/index.rst:13: WARNING: toctree contains reference to nonexisting document 'reference-manual/algorithms' /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/reference-manual/index.rst:13: WARNING: toctree contains reference to nonexisting document 'reference-manual/functions' /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/reference-manual/index.rst:13: WARNING: toctree contains reference to nonexisting document 'reference-manual/special' @@ -128219,7 +128227,7 @@ make[2]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[1]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' # Generate HTML -/usr/bin/make -j16 webpage -C build/documentation +/usr/bin/make -j15 webpage -C build/documentation make[1]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' /usr/bin/cmake -S/build/reproducible-path/gromacs-2020.6 -B/build/reproducible-path/gromacs-2020.6/build/documentation --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/make -f CMakeFiles/Makefile2 webpage @@ -128229,171 +128237,171 @@ /usr/bin/make -f CMakeFiles/Makefile2 docs/CMakeFiles/webpage.dir/all make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' /usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-source-timestamp.dir/build.make docs/doxygen/CMakeFiles/doxygen-source-timestamp.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend +/usr/bin/make -f docs/manual/CMakeFiles/manual.dir/build.make docs/manual/CMakeFiles/manual.dir/depend +/usr/bin/make -f docs/CMakeFiles/sphinx-image-conversion.dir/build.make docs/CMakeFiles/sphinx-image-conversion.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/docs/doxygen /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen/CMakeFiles/doxygen-source-timestamp.dir/DependInfo.cmake --color= +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend +/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= -/usr/bin/make -f docs/manual/CMakeFiles/manual.dir/build.make docs/manual/CMakeFiles/manual.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f docs/CMakeFiles/sphinx-image-conversion.dir/build.make docs/CMakeFiles/sphinx-image-conversion.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/docs/manual /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/docs/manual /build/reproducible-path/gromacs-2020.6/build/documentation/docs/manual/CMakeFiles/manual.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/docs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/docs /build/reproducible-path/gromacs-2020.6/build/documentation/docs/CMakeFiles/sphinx-image-conversion.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_zlib.dir/build.make src/gromacs/CMakeFiles/tng_io_zlib.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= -/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/tng_io_zlib.dir/DependInfo.cmake --color= Scanning dependencies of target doxygen-source-timestamp make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-source-timestamp.dir/build.make docs/doxygen/CMakeFiles/doxygen-source-timestamp.dir/build -cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/documentation/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/documentation/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend -cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen && /usr/bin/cmake -E touch /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen/doxygen-source-timestamp.txt +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= +/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build /usr/bin/make -f docs/manual/CMakeFiles/manual.dir/build.make docs/manual/CMakeFiles/manual.dir/build -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +/usr/bin/make -f docs/CMakeFiles/sphinx-image-conversion.dir/build.make docs/CMakeFiles/sphinx-image-conversion.dir/build /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/documentation/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/documentation/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs/manual && /usr/bin/cmake -E echo "Cannot build PDF manual, because a working form of ImageMagick convert is not available" +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +make[4]: Nothing to be done for 'docs/CMakeFiles/sphinx-image-conversion.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f docs/CMakeFiles/sphinx-image-conversion.dir/build.make docs/CMakeFiles/sphinx-image-conversion.dir/build -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-source-timestamp.dir/build.make docs/doxygen/CMakeFiles/doxygen-source-timestamp.dir/build /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build -make[4]: Nothing to be done for 'docs/CMakeFiles/sphinx-image-conversion.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen && /usr/bin/cmake -E touch /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen/doxygen-source-timestamp.txt +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -Cannot build PDF manual, because a working form of ImageMagick convert is not available make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_zlib.dir/build.make src/gromacs/CMakeFiles/tng_io_zlib.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -[ 0%] Built target release-version-info -[ 0%] Built target doxygen-source-timestamp -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_zlib.dir/build.make src/gromacs/CMakeFiles/tng_io_zlib.dir/depend -[ 0%] Built target manual -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend +Cannot build PDF manual, because a working form of ImageMagick convert is not available make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/tng_io_zlib.dir/DependInfo.cmake --color= +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_zlib.dir/build'. +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend -[ 0%] Built target mdrun_objlib -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend [ 0%] Built target sphinx-image-conversion +make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +[ 0%] Built target mdrun_objlib +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend +[ 0%] Built target manual +[ 0%] Built target doxygen-source-timestamp +[ 0%] Built target release-version-info +[ 0%] Built target tng_io_zlib [ 0%] Built target scanner +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend +/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend [ 2%] Built target tng_io_obj +/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/fileio/CMakeFiles/vmddlopen.dir/DependInfo.cmake --color= -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build +/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-version.dir/build.make docs/doxygen/CMakeFiles/doxygen-version.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +/usr/bin/make -f docs/CMakeFiles/sphinx-input-rst.dir/build.make docs/CMakeFiles/sphinx-input-rst.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs /build/reproducible-path/gromacs-2020.6/build/documentation/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_zlib.dir/build.make src/gromacs/CMakeFiles/tng_io_zlib.dir/build -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/docs/doxygen /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen/CMakeFiles/doxygen-version.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/documentation/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/docs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/docs /build/reproducible-path/gromacs-2020.6/build/documentation/docs/CMakeFiles/sphinx-input-rst.dir/DependInfo.cmake --color= +[ 2%] Built target lmfit_objlib +Scanning dependencies of target doxygen-version make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_zlib.dir/build'. +/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. +make[4]: Nothing to be done for 'src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-version.dir/build.make docs/doxygen/CMakeFiles/doxygen-version.dir/build +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Nothing to be done for 'src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build'. +cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen && /usr/bin/cmake -D VERSION_VARIABLES=/build/reproducible-path/gromacs-2020.6/build/documentation/VersionInfo.cmake -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/docs/doxygen/Doxyfile-version.cmakein -D VERSION_OUT=Doxyfile-version -P /build/reproducible-path/gromacs-2020.6/cmake/gmxConfigureVersionInfo.cmake +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +make[4]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -[ 2%] Built target lmfit_objlib +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +/usr/bin/make -f docs/CMakeFiles/sphinx-input-rst.dir/build.make docs/CMakeFiles/sphinx-input-rst.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Nothing to be done for 'src/programs/CMakeFiles/view_objlib.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -make[4]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -[ 2%] Built target tng_io_zlib -/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-version.dir/build.make docs/doxygen/CMakeFiles/doxygen-version.dir/depend -/usr/bin/make -f docs/CMakeFiles/sphinx-input-rst.dir/build.make docs/CMakeFiles/sphinx-input-rst.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -[ 2%] Built target linearalgebra -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/docs/doxygen /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen/CMakeFiles/doxygen-version.dir/DependInfo.cmake --color= -[ 2%] Built target vmddlopen -[ 5%] Built target thread_mpi make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/docs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/docs /build/reproducible-path/gromacs-2020.6/build/documentation/docs/CMakeFiles/sphinx-input-rst.dir/DependInfo.cmake --color= -[ 5%] Built target view_objlib -[ 7%] Built target modularsimulator -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend -Scanning dependencies of target doxygen-version -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-version.dir/build.make docs/doxygen/CMakeFiles/doxygen-version.dir/build +make[4]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f docs/CMakeFiles/sphinx-input-rst.dir/build.make docs/CMakeFiles/sphinx-input-rst.dir/build -cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen && /usr/bin/cmake -D VERSION_VARIABLES=/build/reproducible-path/gromacs-2020.6/build/documentation/VersionInfo.cmake -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/docs/doxygen/Doxyfile-version.cmakein -D VERSION_OUT=Doxyfile-version -P /build/reproducible-path/gromacs-2020.6/cmake/gmxConfigureVersionInfo.cmake -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Nothing to be done for 'docs/CMakeFiles/sphinx-input-rst.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen && /usr/bin/cmake -E touch Doxyfile-version +[ 2%] Built target vmddlopen +[ 2%] Built target linearalgebra +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +[ 5%] Built target thread_mpi +[ 7%] Built target view_objlib +[ 7%] Built target modularsimulator [ 19%] Built target sphinx-input-rst /usr/bin/make -f docs/CMakeFiles/sphinx-input.dir/build.make docs/CMakeFiles/sphinx-input.dir/depend make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/docs /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/docs /build/reproducible-path/gromacs-2020.6/build/documentation/docs/CMakeFiles/sphinx-input.dir/DependInfo.cmake --color= -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend +[ 19%] Built target doxygen-version +/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-xml.dir/build.make docs/doxygen/CMakeFiles/doxygen-xml.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' +cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/docs/doxygen /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen/CMakeFiles/doxygen-xml.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' /usr/bin/make -f docs/CMakeFiles/sphinx-input.dir/build.make docs/CMakeFiles/sphinx-input.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Nothing to be done for 'docs/CMakeFiles/sphinx-input.dir/build'. make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -[ 19%] Built target doxygen-version -/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-xml.dir/build.make docs/doxygen/CMakeFiles/doxygen-xml.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/docs/doxygen /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen/CMakeFiles/doxygen-xml.dir/DependInfo.cmake --color= -[ 19%] Built target sphinx-input Scanning dependencies of target doxygen-xml make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' /usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-xml.dir/build.make docs/doxygen/CMakeFiles/doxygen-xml.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen && /usr/bin/cmake -E make_directory /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen/depgraphs +[ 19%] Built target sphinx-input cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen && /usr/bin/cmake -DDOCTYPE=xml -P RunDoxygen.cmake NOTE: You are using Doxygen version 1.9.1. The documentation is designed for 1.8.5. Other versions may or may not work, but very likely produce extra warnings. Running Doxygen... @@ -128435,11 +128443,7 @@ cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/cmake -E make_directory /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/_static cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs && /usr/bin/sphinx-build -q -b html -w sphinx-html.log -d /build/reproducible-path/gromacs-2020.6/build/documentation/docs/_doctrees /build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input /build/reproducible-path/gromacs-2020.6/build/documentation/docs/html WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://docs.python.org/3/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.python.org', port=443): Max retries exceeded with url: /3/objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution')) -/build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/reference-manual/index.rst:13: WARNING: toctree contains reference to nonexisting document 'reference-manual/algorithms' -/build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/reference-manual/index.rst:13: WARNING: toctree contains reference to nonexisting document 'reference-manual/functions' -/build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/reference-manual/index.rst:13: WARNING: toctree contains reference to nonexisting document 'reference-manual/special' -/build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/reference-manual/index.rst:13: WARNING: toctree contains reference to nonexisting document 'reference-manual/analysis' +intersphinx inventory 'https://docs.python.org/3/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.python.org', port=443): Max retries exceeded with url: /3/objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution')) The following warnings were produced by Doxygen: /build/reproducible-path/gromacs-2020.6/src/gromacs/math/vec.h:642: warning: unbalanced grouping commands /build/reproducible-path/gromacs-2020.6/src/gromacs/mdlib/settle.cpp:861: warning: Reached end of file while still inside a (nested) comment. Nesting level 1 (probable line reference: 399) @@ -128583,47 +128587,51 @@ make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' [ 97%] Built target doxygen-xml /usr/bin/make -f docs/doxygen/CMakeFiles/dep-graphs-dot.dir/build.make docs/doxygen/CMakeFiles/dep-graphs-dot.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' /usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-user.dir/build.make docs/doxygen/CMakeFiles/doxygen-user.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/docs/doxygen /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen/CMakeFiles/dep-graphs-dot.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/docs/doxygen /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen/CMakeFiles/doxygen-user.dir/DependInfo.cmake --color= Scanning dependencies of target dep-graphs-dot -Scanning dependencies of target doxygen-user make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' /usr/bin/make -f docs/doxygen/CMakeFiles/dep-graphs-dot.dir/build.make docs/doxygen/CMakeFiles/dep-graphs-dot.dir/build -make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen && /usr/bin/python3 /build/reproducible-path/gromacs-2020.6/docs/doxygen/graphbuilder.py -S /build/reproducible-path/gromacs-2020.6 -B /build/reproducible-path/gromacs-2020.6/build/documentation --ignore-cycles /build/reproducible-path/gromacs-2020.6/docs/doxygen/cycle-suppressions.txt -o /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen/depgraphs +Scanning dependencies of target doxygen-user +make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' /usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-user.dir/build.make docs/doxygen/CMakeFiles/doxygen-user.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen && /usr/bin/cmake -E make_directory /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen/depgraphs cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen && /usr/bin/cmake -DDOCTYPE=user -P RunDoxygen.cmake NOTE: You are using Doxygen version 1.9.1. The documentation is designed for 1.8.5. Other versions may or may not work, but very likely produce extra warnings. Running Doxygen... +Scanning source tree... warning: Tag 'MSCGEN_PATH' at line 36 of file 'Doxyfile-common' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" -Scanning source tree... Reading source files... +/build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/reference-manual/index.rst:13: WARNING: toctree contains reference to nonexisting document 'reference-manual/algorithms' +/build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/reference-manual/index.rst:13: WARNING: toctree contains reference to nonexisting document 'reference-manual/functions' +/build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/reference-manual/index.rst:13: WARNING: toctree contains reference to nonexisting document 'reference-manual/special' +/build/reproducible-path/gromacs-2020.6/build/documentation/docs/sphinx-input/reference-manual/index.rst:13: WARNING: toctree contains reference to nonexisting document 'reference-manual/analysis' Reading Doxygen XML files... Writing graphs... cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen && /usr/bin/cmake -E touch /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen/dep-graphs-dot-timestamp.txt make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' [ 98%] Built target dep-graphs-dot /usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-lib.dir/build.make docs/doxygen/CMakeFiles/doxygen-lib.dir/depend -make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' /usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-full.dir/build.make docs/doxygen/CMakeFiles/doxygen-full.dir/depend +make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/docs/doxygen /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen/CMakeFiles/doxygen-lib.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/docs/doxygen /build/reproducible-path/gromacs-2020.6/build/documentation /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen/CMakeFiles/doxygen-full.dir/DependInfo.cmake --color= -Scanning dependencies of target doxygen-lib Scanning dependencies of target doxygen-full +Scanning dependencies of target doxygen-lib make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-lib.dir/build.make docs/doxygen/CMakeFiles/doxygen-lib.dir/build make[4]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/documentation' -/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-full.dir/build.make docs/doxygen/CMakeFiles/doxygen-full.dir/build +/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-lib.dir/build.make docs/doxygen/CMakeFiles/doxygen-lib.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen && /usr/bin/cmake -E make_directory /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen/depgraphs +/usr/bin/make -f docs/doxygen/CMakeFiles/doxygen-full.dir/build.make docs/doxygen/CMakeFiles/doxygen-full.dir/build make[4]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/documentation' cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen && /usr/bin/cmake -E make_directory /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen/depgraphs cd /build/reproducible-path/gromacs-2020.6/build/documentation/docs/doxygen && /usr/bin/cmake -DDOCTYPE=lib -P RunDoxygen.cmake @@ -129681,49 +129689,59 @@ dh_testroot dh_prep -pgromacs dh_installdirs -pgromacs -/usr/bin/make -j16 -C build/basic install DESTDIR=/build/reproducible-path/gromacs-2020.6/debian/gromacs +/usr/bin/make -j15 -C build/basic install DESTDIR=/build/reproducible-path/gromacs-2020.6/debian/gromacs make[1]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/cmake -S/build/reproducible-path/gromacs-2020.6 -B/build/reproducible-path/gromacs-2020.6/build/basic --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/gromacs-2020.6/build/basic/CMakeFiles /build/reproducible-path/gromacs-2020.6/build/basic//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= -/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend +/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/basic/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/basic/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/CMakeFiles/vmddlopen.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build +/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[3]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/basic/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/basic/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. +make[3]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build @@ -129731,52 +129749,42 @@ make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build -[ 0%] Built target scanner +make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[3]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 0%] Built target release-version-info +/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +make[3]: Nothing to be done for 'src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build +[ 0%] Built target scanner +[ 0%] Built target release-version-info +[ 1%] Built target modularsimulator [ 1%] Built target lmfit_objlib -[ 1%] Built target tng_io_obj [ 5%] Built target thread_mpi -/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend +[ 6%] Built target tng_io_obj make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -make[3]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/fileio/CMakeFiles/vmddlopen.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/programs /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend -[ 6%] Built target linearalgebra -[ 8%] Built target modularsimulator +[ 8%] Built target linearalgebra +cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/programs /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +[ 8%] Built target vmddlopen cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/programs /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -make[3]: Nothing to be done for 'src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build'. -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 8%] Built target vmddlopen -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -[ 10%] Built target mdrun_objlib /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[3]: Nothing to be done for 'src/programs/CMakeFiles/view_objlib.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +[ 10%] Built target mdrun_objlib [ 11%] Built target view_objlib make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= @@ -129788,31 +129796,31 @@ [ 98%] Built target libgromacs /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/depend /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend -/usr/bin/make -f src/api/cpp/CMakeFiles/gmxapi.dir/build.make src/api/cpp/CMakeFiles/gmxapi.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/share/template /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/share/template /build/reproducible-path/gromacs-2020.6/build/basic/share/template/CMakeFiles/template.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/programs /build/reproducible-path/gromacs-2020.6/build/basic/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake --color= +/usr/bin/make -f src/api/cpp/CMakeFiles/gmxapi.dir/build.make src/api/cpp/CMakeFiles/gmxapi.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' cd /build/reproducible-path/gromacs-2020.6/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/api/cpp /build/reproducible-path/gromacs-2020.6/build/basic /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp /build/reproducible-path/gromacs-2020.6/build/basic/src/api/cpp/CMakeFiles/gmxapi.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +/usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/build +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' +make[3]: Nothing to be done for 'share/template/CMakeFiles/template.dir/build'. +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' +[ 98%] Built target template make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[3]: Nothing to be done for 'src/programs/CMakeFiles/gmx.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/make -f src/api/cpp/CMakeFiles/gmxapi.dir/build.make src/api/cpp/CMakeFiles/gmxapi.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' make[3]: Nothing to be done for 'src/api/cpp/CMakeFiles/gmxapi.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' [ 98%] Built target gmx -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/build -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic' -make[3]: Nothing to be done for 'share/template/CMakeFiles/template.dir/build'. -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' [100%] Built target gmxapi -[100%] Built target template make[2]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/gromacs-2020.6/build/basic/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall @@ -130509,102 +130517,102 @@ -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/cmake/gmxapi/gmxapi-config-version.cmake -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs/usr/share/cmake/gmxapi/gmxapi-config.cmake make[1]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic' -/usr/bin/make -j16 -C build/basic-dp install DESTDIR=/build/reproducible-path/gromacs-2020.6/debian/gromacs +/usr/bin/make -j15 -C build/basic-dp install DESTDIR=/build/reproducible-path/gromacs-2020.6/debian/gromacs make[1]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/cmake -S/build/reproducible-path/gromacs-2020.6 -B/build/reproducible-path/gromacs-2020.6/build/basic-dp --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/gromacs-2020.6/build/basic-dp/CMakeFiles /build/reproducible-path/gromacs-2020.6/build/basic-dp//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend -/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp 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src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -make[3]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +make[3]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/basic-dp/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/basic-dp/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' [ 1%] Built target scanner -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build +[ 1%] Built target release-version-info make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[3]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' [ 1%] Built target lmfit_objlib -[ 5%] Built target thread_mpi -[ 6%] Built target tng_io_obj +[ 3%] Built target tng_io_obj /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend -[ 6%] Built target release-version-info +[ 6%] Built target thread_mpi /usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= +[ 6%] Built target linearalgebra /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/fileio/CMakeFiles/vmddlopen.dir/DependInfo.cmake --color= -/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= -[ 6%] Built target linearalgebra make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/modularsimulator 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/build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build -[ 6%] Built target mdrun_objlib -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -make[3]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[3]: Nothing to be done for 'src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' -[ 8%] Built target modularsimulator -[ 8%] Built target vmddlopen -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +make[3]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +[ 6%] Built target mdrun_objlib +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[3]: Nothing to be done for 'src/programs/CMakeFiles/view_objlib.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +[ 6%] Built target vmddlopen +[ 8%] Built target modularsimulator +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend [ 10%] Built target view_objlib make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' cd /build/reproducible-path/gromacs-2020.6/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/basic-dp/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= @@ -130627,10 +130635,10 @@ make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/make -f src/api/cpp/CMakeFiles/gmxapi.dir/build.make src/api/cpp/CMakeFiles/gmxapi.dir/build -[ 98%] Built target gmx make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' make[3]: Nothing to be done for 'src/api/cpp/CMakeFiles/gmxapi.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' +[ 98%] Built target gmx [100%] Built target gmxapi make[2]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/basic-dp' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/gromacs-2020.6/build/basic-dp/CMakeFiles 0 @@ -131254,7 +131262,7 @@ dh_testroot dh_prep -pgromacs-mpich dh_installdirs -pgromacs-mpich -/usr/bin/make -j16 -C build/mpich install DESTDIR=/build/reproducible-path/gromacs-2020.6/debian/gromacs-mpich +/usr/bin/make -j15 -C build/mpich install DESTDIR=/build/reproducible-path/gromacs-2020.6/debian/gromacs-mpich make[1]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' /usr/bin/cmake -S/build/reproducible-path/gromacs-2020.6 -B/build/reproducible-path/gromacs-2020.6/build/mpich --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/gromacs-2020.6/build/mpich/CMakeFiles /build/reproducible-path/gromacs-2020.6/build/mpich//CMakeFiles/progress.marks @@ -131264,52 +131272,43 @@ /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/mpich/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/mpich/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/programs /build/reproducible-path/gromacs-2020.6/build/mpich/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[3]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. +cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/mpich/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/mpich/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build +make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build -[ 0%] Built target release-version-info make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' @@ -131317,22 +131316,31 @@ make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[3]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +[ 0%] Built target scanner +[ 0%] Built target release-version-info +[ 0%] Built target lmfit_objlib +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend +[ 1%] Built target thread_mpi +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -make[3]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= +[ 4%] Built target tng_io_obj +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/programs /build/reproducible-path/gromacs-2020.6/build/mpich/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= +[ 4%] Built target linearalgebra make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -[ 0%] Built target scanner -[ 0%] Built target lmfit_objlib -[ 2%] Built target tng_io_obj -[ 4%] Built target thread_mpi -[ 4%] Built target linearalgebra -[ 7%] Built target modularsimulator +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +make[3]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' +[ 5%] Built target mdrun_objlib +[ 8%] Built target modularsimulator /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend -[ 8%] Built target mdrun_objlib make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich' cd /build/reproducible-path/gromacs-2020.6/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' @@ -131373,85 +131381,85 @@ -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs-mpich/usr/bin/mdrun_mpi.mpich -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs-mpich/usr/bin/gmx-completion-mdrun_mpi.mpich.bash make[1]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich' -/usr/bin/make -j16 -C build/mpich-dp install DESTDIR=/build/reproducible-path/gromacs-2020.6/debian/gromacs-mpich +/usr/bin/make -j15 -C build/mpich-dp install DESTDIR=/build/reproducible-path/gromacs-2020.6/debian/gromacs-mpich make[1]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' /usr/bin/cmake -S/build/reproducible-path/gromacs-2020.6 -B/build/reproducible-path/gromacs-2020.6/build/mpich-dp --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/gromacs-2020.6/build/mpich-dp/CMakeFiles /build/reproducible-path/gromacs-2020.6/build/mpich-dp//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend -/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' make[3]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/mpich-dp/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/mpich-dp/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build +make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= -make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. +make[3]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' [ 0%] Built target scanner [ 0%] Built target release-version-info -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= +[ 0%] Built target lmfit_objlib /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend +[ 1%] Built target thread_mpi make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= +[ 4%] Built target tng_io_obj make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' +[ 4%] Built target linearalgebra cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/programs /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= -make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -[ 0%] Built target lmfit_objlib -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. +make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build -[ 1%] Built target thread_mpi -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -make[3]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +[ 5%] Built target mdrun_objlib make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' make[3]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' -[ 4%] Built target tng_io_obj -[ 7%] Built target modularsimulator -[ 7%] Built target linearalgebra +[ 8%] Built target modularsimulator /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend -[ 8%] Built target mdrun_objlib make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' cd /build/reproducible-path/gromacs-2020.6/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich-dp /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/mpich-dp/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/mpich-dp' @@ -131504,60 +131512,66 @@ dh_testroot dh_prep -pgromacs-openmpi dh_installdirs -pgromacs-openmpi -/usr/bin/make -j16 -C build/openmpi install DESTDIR=/build/reproducible-path/gromacs-2020.6/debian/gromacs-openmpi +/usr/bin/make -j15 -C build/openmpi install DESTDIR=/build/reproducible-path/gromacs-2020.6/debian/gromacs-openmpi make[1]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' /usr/bin/cmake -S/build/reproducible-path/gromacs-2020.6 -B/build/reproducible-path/gromacs-2020.6/build/openmpi --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/gromacs-2020.6/build/openmpi/CMakeFiles /build/reproducible-path/gromacs-2020.6/build/openmpi//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend +cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build -cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' make[3]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/openmpi/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/openmpi/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +/usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/openmpi/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/openmpi/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +make[3]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' [ 0%] Built target scanner -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +[ 0%] Built target lmfit_objlib +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend [ 1%] Built target thread_mpi [ 4%] Built target tng_io_obj -[ 4%] Built target lmfit_objlib -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= +[ 4%] Built target linearalgebra /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= @@ -131565,24 +131579,18 @@ cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/programs /build/reproducible-path/gromacs-2020.6/build/openmpi/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= [ 4%] Built target release-version-info make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build -make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -make[3]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' +/usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build +make[3]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -make[3]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. +make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -[ 5%] Built target mdrun_objlib -[ 5%] Built target linearalgebra -[ 8%] Built target modularsimulator +[ 7%] Built target modularsimulator /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend +[ 8%] Built target mdrun_objlib make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' cd /build/reproducible-path/gromacs-2020.6/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' @@ -131623,85 +131631,85 @@ -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs-openmpi/usr/bin/mdrun_mpi.openmpi -- Installing: /build/reproducible-path/gromacs-2020.6/debian/gromacs-openmpi/usr/bin/gmx-completion-mdrun_mpi.openmpi.bash make[1]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi' -/usr/bin/make -j16 -C build/openmpi-dp install DESTDIR=/build/reproducible-path/gromacs-2020.6/debian/gromacs-openmpi +/usr/bin/make -j15 -C build/openmpi-dp install DESTDIR=/build/reproducible-path/gromacs-2020.6/debian/gromacs-openmpi make[1]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' /usr/bin/cmake -S/build/reproducible-path/gromacs-2020.6 -B/build/reproducible-path/gromacs-2020.6/build/openmpi-dp --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/CMakeFiles /build/reproducible-path/gromacs-2020.6/build/openmpi-dp//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/selection /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= +/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -cd /build/reproducible-path/gromacs-2020.6 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.6-Debian-2020.6-2 -D PROJECT_SOURCE_DIR=/build/reproducible-path/gromacs-2020.6 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/build/reproducible-path/gromacs-2020.6/build/openmpi-dp/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Debian-2020.6-2 -P /build/reproducible-path/gromacs-2020.6/cmake/gmxGenerateVersionInfoRelease.cmake +cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' make[3]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -/usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/linearalgebra /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= -/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build +/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +/usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. +make[3]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -[ 0%] Built target scanner +make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -/usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build -[ 0%] Built target release-version-info +/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -make[3]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. +make[3]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' +[ 0%] Built target release-version-info [ 0%] Built target lmfit_objlib -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend +[ 0%] Built target scanner +[ 1%] Built target thread_mpi /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend -[ 0%] Built target linearalgebra -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/programs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/programs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= -[ 1%] Built target thread_mpi -cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= [ 4%] Built target tng_io_obj +[ 7%] Built target modularsimulator +[ 7%] Built target linearalgebra +/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -/usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build -[ 5%] Built target mdrun_objlib -make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -make[3]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. -make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' -[ 8%] Built target modularsimulator -/usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend +[ 8%] Built target mdrun_objlib make[3]: Entering directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' cd /build/reproducible-path/gromacs-2020.6/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gromacs-2020.6 /build/reproducible-path/gromacs-2020.6/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs /build/reproducible-path/gromacs-2020.6/build/openmpi-dp/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/reproducible-path/gromacs-2020.6/build/openmpi-dp' @@ -139186,14 +139194,14 @@ dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'gromacs' in '../gromacs_2020.6-2_amd64.deb'. -dpkg-deb: building package 'libgromacs5-dbgsym' in '../libgromacs5-dbgsym_2020.6-2_amd64.deb'. -dpkg-deb: building package 'gromacs-openmpi-dbgsym' in '../gromacs-openmpi-dbgsym_2020.6-2_amd64.deb'. dpkg-deb: building package 'gromacs-dbgsym' in '../gromacs-dbgsym_2020.6-2_amd64.deb'. +dpkg-deb: building package 'libgromacs5-dbgsym' in '../libgromacs5-dbgsym_2020.6-2_amd64.deb'. +dpkg-deb: building package 'libgromacs5' in '../libgromacs5_2020.6-2_amd64.deb'. dpkg-deb: building package 'libgromacs-dev' in '../libgromacs-dev_2020.6-2_amd64.deb'. dpkg-deb: building package 'gromacs-mpich' in '../gromacs-mpich_2020.6-2_amd64.deb'. -dpkg-deb: building package 'libgromacs5' in '../libgromacs5_2020.6-2_amd64.deb'. -dpkg-deb: building package 'gromacs-openmpi' in '../gromacs-openmpi_2020.6-2_amd64.deb'. dpkg-deb: building package 'gromacs-mpich-dbgsym' in '../gromacs-mpich-dbgsym_2020.6-2_amd64.deb'. +dpkg-deb: building package 'gromacs-openmpi' in '../gromacs-openmpi_2020.6-2_amd64.deb'. +dpkg-deb: building package 'gromacs-openmpi-dbgsym' in '../gromacs-openmpi-dbgsym_2020.6-2_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../gromacs_2020.6-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -139201,12 +139209,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1111284/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1111284/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3709870 and its subdirectories -I: Current time: Fri Feb 7 21:48:46 -12 2025 -I: pbuilder-time-stamp: 1739008126 +I: removing directory /srv/workspace/pbuilder/1111284 and its subdirectories +I: Current time: Sun Jan 7 19:03:06 +14 2024 +I: pbuilder-time-stamp: 1704603786