Diff of the two buildlogs: -- --- b1/build.log 2024-01-07 15:45:05.485270470 +0000 +++ b2/build.log 2024-01-07 15:48:27.661091751 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Jan 7 03:28:50 -12 2024 -I: pbuilder-time-stamp: 1704641330 +I: Current time: Sun Feb 9 12:08:14 +14 2025 +I: pbuilder-time-stamp: 1739052494 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -17,7 +17,7 @@ I: copying [./htslib_1.11-4.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.GkHzFcCw/trustedkeys.kbx': General error +gpgv: keyblock resource '/tmp/dpkg-verify-sig.Fm6eoYVR/trustedkeys.kbx': General error gpgv: Signature made Sat Jan 2 15:28:47 2021 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key @@ -35,49 +35,80 @@ dpkg-source: info: applying 273c5e76a1694aa2a13fd51c133abed2ef8ab4d3.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1520871/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/277327/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Feb 8 22:08 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/277327/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/277327/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=15 ' - DISTRIBUTION='bullseye' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=16 ' + DIRSTACK=() + DISTRIBUTION=bullseye + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='af8c0f2ce781484c8e615c5a71b85569' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1520871' - PS1='# ' - PS2='> ' + INVOCATION_ID=9c63979356bb416ebfde0432a07f7753 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=277327 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Jamj0lcv/pbuilderrc_lQeZ --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Jamj0lcv/b1 --logfile b1/build.log htslib_1.11-4.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://78.137.99.97:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Jamj0lcv/pbuilderrc_uUuD --distribution bullseye --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Jamj0lcv/b2 --logfile b2/build.log htslib_1.11-4.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://85.184.249.68:3128 I: uname -a - Linux ionos1-amd64 6.1.0-17-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.69-1 (2023-12-30) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.5.0-0.deb12.4-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.5.10-1~bpo12+1 (2023-11-23) x86_64 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1234376 Mar 27 2022 bash @@ -137,7 +168,7 @@ -rwxr-xr-x 1 root root 52032 Sep 24 2020 rmdir -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Jan 7 09:30 sh -> dash + lrwxrwxrwx 1 root root 9 Feb 8 22:08 sh -> /bin/bash -rwxr-xr-x 1 root root 43808 Sep 24 2020 sleep -rwxr-xr-x 1 root root 84928 Sep 24 2020 stty -rwsr-xr-x 1 root root 71912 Jan 20 2022 su @@ -163,7 +194,7 @@ -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew -I: user script /srv/workspace/pbuilder/1520871/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/277327/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -261,7 +292,7 @@ Get: 46 http://deb.debian.org/debian bullseye/main amd64 liblzma-dev amd64 5.2.5-2.1~deb11u1 [229 kB] Get: 47 http://deb.debian.org/debian bullseye/main amd64 libssl-dev amd64 1.1.1w-0+deb11u1 [1820 kB] Get: 48 http://deb.debian.org/debian bullseye/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2+deb11u2 [191 kB] -Fetched 22.5 MB in 4s (5482 kB/s) +Fetched 22.5 MB in 1s (37.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17743 files and directories currently installed.) @@ -469,7 +500,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/htslib-1.11/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../htslib_1.11-4_source.changes +I: user script /srv/workspace/pbuilder/277327/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for bullseye +I: user script /srv/workspace/pbuilder/277327/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/htslib-1.11/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../htslib_1.11-4_source.changes dpkg-buildpackage: info: source package htslib dpkg-buildpackage: info: source version 1.11-4 dpkg-buildpackage: info: source distribution unstable @@ -483,7 +518,7 @@ make[1]: Entering directory '/build/reproducible-path/htslib-1.11' dh_auto_clean install -d /build/reproducible-path/htslib-1.11/debian/.debhelper/generated/_source/home - make -j15 distclean + make -j16 distclean make[2]: Entering directory '/build/reproducible-path/htslib-1.11' rm -f test/*.tmp test/*.tmp.* test/longrefs/*.tmp.* test/tabix/*.tmp.* test/tabix/FAIL* header-exports.txt shlib-exports-so.txt rm -f libhts.so libhts.so.* @@ -598,7 +633,7 @@ LDFLAGS="$(dpkg-buildflags --get LDFLAGS)" \ PACKAGE_VERSION="1.11-4" \ libdir=/usr/lib/x86_64-linux-gnu - make -j15 "CFLAGS=-g -O2 -fdebug-prefix-map=/build/reproducible-path/htslib-1.11=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden" "CPPFLAGS=-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" "LDFLAGS=-Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden" PACKAGE_VERSION=1.11-4 libdir=/usr/lib/x86_64-linux-gnu + make -j16 "CFLAGS=-g -O2 -fdebug-prefix-map=/build/reproducible-path/htslib-1.11=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden" "CPPFLAGS=-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" "LDFLAGS=-Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden" PACKAGE_VERSION=1.11-4 libdir=/usr/lib/x86_64-linux-gnu make[2]: Entering directory '/build/reproducible-path/htslib-1.11' gcc -g -O2 -fdebug-prefix-map=/build/reproducible-path/htslib-1.11=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kfunc.o kfunc.c gcc -g -O2 -fdebug-prefix-map=/build/reproducible-path/htslib-1.11=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o knetfile.o knetfile.c @@ -755,7 +790,7 @@ if find . -name "FAIL*" > /dev/null ; then \ for file in $(find . -name "FAIL*"); do echo ${file}; cat ${file}; done && false ; \ fi - make -j15 test VERBOSE=1 "CFLAGS=-g -O2 -fdebug-prefix-map=/build/reproducible-path/htslib-1.11=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden" "CPPFLAGS=-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" "LDFLAGS=-Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden" PACKAGE_VERSION=1.11-4 libdir=/usr/lib/x86_64-linux-gnu + make -j16 test VERBOSE=1 "CFLAGS=-g -O2 -fdebug-prefix-map=/build/reproducible-path/htslib-1.11=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden" "CPPFLAGS=-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" "LDFLAGS=-Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden" PACKAGE_VERSION=1.11-4 libdir=/usr/lib/x86_64-linux-gnu make[2]: Entering directory '/build/reproducible-path/htslib-1.11' test/hts_endian test/test_kfunc @@ -838,139 +873,139 @@ bgzip -b -I 4 threads: .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_view -l 0 -b -m 14 -x /tmp/PtcQUZbKI3/index.bam.csi /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/PtcQUZbKI3/index.bam + /build/reproducible-path/htslib-1.11/test/test_view -l 0 -b -m 14 -x /tmp/GP2a9obAXO/index.bam.csi /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/GP2a9obAXO/index.bam .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_index -c /tmp/PtcQUZbKI3/index.bam + /build/reproducible-path/htslib-1.11/test/test_index -c /tmp/GP2a9obAXO/index.bam .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_view -l 0 -b -m 0 -x /tmp/PtcQUZbKI3/index.bam.bai /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/PtcQUZbKI3/index.bam + /build/reproducible-path/htslib-1.11/test/test_view -l 0 -b -m 0 -x /tmp/GP2a9obAXO/index.bam.bai /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/GP2a9obAXO/index.bam .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_index -b /tmp/PtcQUZbKI3/index.bam + /build/reproducible-path/htslib-1.11/test/test_index -b /tmp/GP2a9obAXO/index.bam .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_view -l 0 -z -m 14 -x /tmp/PtcQUZbKI3/index.sam.gz.csi /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/PtcQUZbKI3/index.sam.gz + /build/reproducible-path/htslib-1.11/test/test_view -l 0 -z -m 14 -x /tmp/GP2a9obAXO/index.sam.gz.csi /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/GP2a9obAXO/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_index -c /tmp/PtcQUZbKI3/index.sam.gz + /build/reproducible-path/htslib-1.11/test/test_index -c /tmp/GP2a9obAXO/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_view -l 0 -z -m 0 -x /tmp/PtcQUZbKI3/index.sam.gz.bai /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/PtcQUZbKI3/index.sam.gz + /build/reproducible-path/htslib-1.11/test/test_view -l 0 -z -m 0 -x /tmp/GP2a9obAXO/index.sam.gz.bai /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/GP2a9obAXO/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_index -b /tmp/PtcQUZbKI3/index.sam.gz + /build/reproducible-path/htslib-1.11/test/test_index -b /tmp/GP2a9obAXO/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_view -l 0 -C -x /tmp/PtcQUZbKI3/index.cram.crai /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/PtcQUZbKI3/index.cram + /build/reproducible-path/htslib-1.11/test/test_view -l 0 -C -x /tmp/GP2a9obAXO/index.cram.crai /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/GP2a9obAXO/index.cram .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_index /tmp/PtcQUZbKI3/index.cram + /build/reproducible-path/htslib-1.11/test/test_index /tmp/GP2a9obAXO/index.cram .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_view -l 0 -b -m 14 -x /tmp/PtcQUZbKI3/index.bcf.csi /build/reproducible-path/htslib-1.11/test/index.vcf > /tmp/PtcQUZbKI3/index.bcf + /build/reproducible-path/htslib-1.11/test/test_view -l 0 -b -m 14 -x /tmp/GP2a9obAXO/index.bcf.csi /build/reproducible-path/htslib-1.11/test/index.vcf > /tmp/GP2a9obAXO/index.bcf .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_index -c /tmp/PtcQUZbKI3/index.bcf + /build/reproducible-path/htslib-1.11/test/test_index -c /tmp/GP2a9obAXO/index.bcf .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_view -l 0 -z -m 14 -x /tmp/PtcQUZbKI3/index.vcf.gz.csi /build/reproducible-path/htslib-1.11/test/index.vcf > /tmp/PtcQUZbKI3/index.vcf.gz + /build/reproducible-path/htslib-1.11/test/test_view -l 0 -z -m 14 -x /tmp/GP2a9obAXO/index.vcf.gz.csi /build/reproducible-path/htslib-1.11/test/index.vcf > /tmp/GP2a9obAXO/index.vcf.gz .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_index -c /tmp/PtcQUZbKI3/index.vcf.gz + /build/reproducible-path/htslib-1.11/test/test_index -c /tmp/GP2a9obAXO/index.vcf.gz .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_view -l 0 -z -m 0 -x /tmp/PtcQUZbKI3/index.vcf.gz.tbi /build/reproducible-path/htslib-1.11/test/index.vcf > /tmp/PtcQUZbKI3/index.vcf.gz + /build/reproducible-path/htslib-1.11/test/test_view -l 0 -z -m 0 -x /tmp/GP2a9obAXO/index.vcf.gz.tbi /build/reproducible-path/htslib-1.11/test/index.vcf > /tmp/GP2a9obAXO/index.vcf.gz .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_index -t /tmp/PtcQUZbKI3/index.vcf.gz + /build/reproducible-path/htslib-1.11/test/test_index -t /tmp/GP2a9obAXO/index.vcf.gz .. ok test_index: - /build/reproducible-path/htslib-1.11/tabix /tmp/PtcQUZbKI3/index.vcf.gz##idx##/tmp/PtcQUZbKI3/index.vcf.gz.tbi 1:10000060-10000060 + /build/reproducible-path/htslib-1.11/tabix /tmp/GP2a9obAXO/index.vcf.gz##idx##/tmp/GP2a9obAXO/index.vcf.gz.tbi 1:10000060-10000060 .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_view -@4 -l 0 -b -m 14 -x /tmp/PtcQUZbKI3/index.bam.csi /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/PtcQUZbKI3/index.bam + /build/reproducible-path/htslib-1.11/test/test_view -@4 -l 0 -b -m 14 -x /tmp/GP2a9obAXO/index.bam.csi /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/GP2a9obAXO/index.bam .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_index -c /tmp/PtcQUZbKI3/index.bam + /build/reproducible-path/htslib-1.11/test/test_index -c /tmp/GP2a9obAXO/index.bam .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_view -@4 -l 0 -b -m 0 -x /tmp/PtcQUZbKI3/index.bam.bai /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/PtcQUZbKI3/index.bam + /build/reproducible-path/htslib-1.11/test/test_view -@4 -l 0 -b -m 0 -x /tmp/GP2a9obAXO/index.bam.bai /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/GP2a9obAXO/index.bam .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_index -b /tmp/PtcQUZbKI3/index.bam + /build/reproducible-path/htslib-1.11/test/test_index -b /tmp/GP2a9obAXO/index.bam .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_view -@4 -l 0 -z -m 14 -x /tmp/PtcQUZbKI3/index.sam.gz.csi /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/PtcQUZbKI3/index.sam.gz + /build/reproducible-path/htslib-1.11/test/test_view -@4 -l 0 -z -m 14 -x /tmp/GP2a9obAXO/index.sam.gz.csi /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/GP2a9obAXO/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_index -c /tmp/PtcQUZbKI3/index.sam.gz + /build/reproducible-path/htslib-1.11/test/test_index -c /tmp/GP2a9obAXO/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_view -@4 -l 0 -z -m 0 -x /tmp/PtcQUZbKI3/index.sam.gz.bai /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/PtcQUZbKI3/index.sam.gz + /build/reproducible-path/htslib-1.11/test/test_view -@4 -l 0 -z -m 0 -x /tmp/GP2a9obAXO/index.sam.gz.bai /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/GP2a9obAXO/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_index -b /tmp/PtcQUZbKI3/index.sam.gz + /build/reproducible-path/htslib-1.11/test/test_index -b /tmp/GP2a9obAXO/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_view -@4 -l 0 -C -x /tmp/PtcQUZbKI3/index.cram.crai /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/PtcQUZbKI3/index.cram + /build/reproducible-path/htslib-1.11/test/test_view -@4 -l 0 -C -x /tmp/GP2a9obAXO/index.cram.crai /build/reproducible-path/htslib-1.11/test/index.sam > /tmp/GP2a9obAXO/index.cram .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_index /tmp/PtcQUZbKI3/index.cram + /build/reproducible-path/htslib-1.11/test/test_index /tmp/GP2a9obAXO/index.cram .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_view -@4 -l 0 -b -m 14 -x /tmp/PtcQUZbKI3/index.bcf.csi /build/reproducible-path/htslib-1.11/test/index.vcf > /tmp/PtcQUZbKI3/index.bcf + /build/reproducible-path/htslib-1.11/test/test_view -@4 -l 0 -b -m 14 -x /tmp/GP2a9obAXO/index.bcf.csi /build/reproducible-path/htslib-1.11/test/index.vcf > /tmp/GP2a9obAXO/index.bcf .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_index -c /tmp/PtcQUZbKI3/index.bcf + /build/reproducible-path/htslib-1.11/test/test_index -c /tmp/GP2a9obAXO/index.bcf .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_view -@4 -l 0 -z -m 14 -x /tmp/PtcQUZbKI3/index.vcf.gz.csi /build/reproducible-path/htslib-1.11/test/index.vcf > /tmp/PtcQUZbKI3/index.vcf.gz + /build/reproducible-path/htslib-1.11/test/test_view -@4 -l 0 -z -m 14 -x /tmp/GP2a9obAXO/index.vcf.gz.csi /build/reproducible-path/htslib-1.11/test/index.vcf > /tmp/GP2a9obAXO/index.vcf.gz .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_index -c /tmp/PtcQUZbKI3/index.vcf.gz + /build/reproducible-path/htslib-1.11/test/test_index -c /tmp/GP2a9obAXO/index.vcf.gz .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_view -@4 -l 0 -z -m 0 -x /tmp/PtcQUZbKI3/index.vcf.gz.tbi /build/reproducible-path/htslib-1.11/test/index.vcf > /tmp/PtcQUZbKI3/index.vcf.gz + /build/reproducible-path/htslib-1.11/test/test_view -@4 -l 0 -z -m 0 -x /tmp/GP2a9obAXO/index.vcf.gz.tbi /build/reproducible-path/htslib-1.11/test/index.vcf > /tmp/GP2a9obAXO/index.vcf.gz .. ok test_index: - /build/reproducible-path/htslib-1.11/test/test_index -t /tmp/PtcQUZbKI3/index.vcf.gz + /build/reproducible-path/htslib-1.11/test/test_index -t /tmp/GP2a9obAXO/index.vcf.gz .. ok test_index: - /build/reproducible-path/htslib-1.11/tabix /tmp/PtcQUZbKI3/index.vcf.gz##idx##/tmp/PtcQUZbKI3/index.vcf.gz.tbi 1:10000060-10000060 + /build/reproducible-path/htslib-1.11/tabix /tmp/GP2a9obAXO/index.vcf.gz##idx##/tmp/GP2a9obAXO/index.vcf.gz.tbi 1:10000060-10000060 .. ok test_view testing multi-ref CRAM modes: @@ -3055,9 +3090,9 @@ .. ok test_vcf_api: - /build/reproducible-path/htslib-1.11/test/test-vcf-api /tmp/PtcQUZbKI3/test-vcf-api.bcf + /build/reproducible-path/htslib-1.11/test/test-vcf-api /tmp/GP2a9obAXO/test-vcf-api.bcf [E::bcf_index_build3] TBI indices for BCF files are not supported -[E::idx_find_and_load] Could not retrieve index file for '/tmp/PtcQUZbKI3/test-vcf-api.bcf' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/GP2a9obAXO/test-vcf-api.bcf' .. ok test_bcf2vcf: @@ -3065,7 +3100,7 @@ .. ok test_vcf_sweep: - /build/reproducible-path/htslib-1.11/test/test-vcf-sweep /tmp/PtcQUZbKI3/test-vcf-api.bcf + /build/reproducible-path/htslib-1.11/test/test-vcf-sweep /tmp/GP2a9obAXO/test-vcf-api.bcf .. ok test_vcf_various: @@ -3085,43 +3120,43 @@ .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/PtcQUZbKI3 -s 1364342805 + /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/GP2a9obAXO -s 471210472 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/PtcQUZbKI3 -s 941426810 + /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/GP2a9obAXO -s 1238695237 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/PtcQUZbKI3 -s 1447217295 + /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/GP2a9obAXO -s 821264009 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/PtcQUZbKI3 -s 1293809760 + /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/GP2a9obAXO -s 532234866 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/PtcQUZbKI3 -s 468405397 + /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/GP2a9obAXO -s 1524526929 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/PtcQUZbKI3 -s 823027213 + /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/GP2a9obAXO -s 13175899 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/PtcQUZbKI3 -s 580415221 + /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/GP2a9obAXO -s 1704828710 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/PtcQUZbKI3 -s 1178491675 + /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/GP2a9obAXO -s 1545133981 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/PtcQUZbKI3 -s 321837921 + /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/GP2a9obAXO -s 1408983738 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/PtcQUZbKI3 -s 658873652 + /build/reproducible-path/htslib-1.11/test/test-bcf-sr.pl -t /tmp/GP2a9obAXO -s 1619391890 .. ok test_command: @@ -3129,15 +3164,15 @@ .. ok test_convert_padded_header: - /build/reproducible-path/htslib-1.11/test/test_view -t ce.fa -C /tmp/PtcQUZbKI3/headernul0.bam + /build/reproducible-path/htslib-1.11/test/test_view -t ce.fa -C /tmp/GP2a9obAXO/headernul0.bam .. ok test_convert_padded_header: - /build/reproducible-path/htslib-1.11/test/test_view -t ce.fa -C /tmp/PtcQUZbKI3/headernul1.bam + /build/reproducible-path/htslib-1.11/test/test_view -t ce.fa -C /tmp/GP2a9obAXO/headernul1.bam .. ok test_convert_padded_header: - /build/reproducible-path/htslib-1.11/test/test_view -t ce.fa -C /tmp/PtcQUZbKI3/headernul678.bam + /build/reproducible-path/htslib-1.11/test/test_view -t ce.fa -C /tmp/GP2a9obAXO/headernul678.bam .. ok test_rebgzip: Alternate zlib/deflate library detected @@ -3192,7 +3227,7 @@ failed .. 0 make[2]: Leaving directory '/build/reproducible-path/htslib-1.11' - rm -fr -- /tmp/dh-xdg-rundir-a53Eplpa + rm -fr -- /tmp/dh-xdg-rundir-zPx3URV_ make[1]: Leaving directory '/build/reproducible-path/htslib-1.11' rm -f debian/libhts-dev.debhelper.log debian/libhts3.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_auto_test-indep @@ -3216,15 +3251,15 @@ PACKAGE_VERSION="1.11-4" \ libdir=/usr/lib/x86_64-linux-gnu install -d /build/reproducible-path/htslib-1.11/debian/tmp - make -j15 install DESTDIR=/build/reproducible-path/htslib-1.11/debian/tmp AM_UPDATE_INFO_DIR=no prefix=/usr "CFLAGS=-g -O2 -fdebug-prefix-map=/build/reproducible-path/htslib-1.11=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden" "CPPFLAGS=-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" "LDFLAGS=-Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden" PACKAGE_VERSION=1.11-4 libdir=/usr/lib/x86_64-linux-gnu + make -j16 install DESTDIR=/build/reproducible-path/htslib-1.11/debian/tmp AM_UPDATE_INFO_DIR=no prefix=/usr "CFLAGS=-g -O2 -fdebug-prefix-map=/build/reproducible-path/htslib-1.11=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden" "CPPFLAGS=-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" "LDFLAGS=-Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden" PACKAGE_VERSION=1.11-4 libdir=/usr/lib/x86_64-linux-gnu make[2]: Entering directory '/build/reproducible-path/htslib-1.11' mkdir -p -m 755 /build/reproducible-path/htslib-1.11/debian/tmp/usr/bin /build/reproducible-path/htslib-1.11/debian/tmp/usr/include /build/reproducible-path/htslib-1.11/debian/tmp/usr/include/htslib /build/reproducible-path/htslib-1.11/debian/tmp/usr/lib/x86_64-linux-gnu /build/reproducible-path/htslib-1.11/debian/tmp/usr/share/man/man1 /build/reproducible-path/htslib-1.11/debian/tmp/usr/share/man/man5 /build/reproducible-path/htslib-1.11/debian/tmp/usr/share/man/man7 /build/reproducible-path/htslib-1.11/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig if test -n "/htslib"; then mkdir -p -m 755 /build/reproducible-path/htslib-1.11/debian/tmp/htslib; fi install -p -m 644 libhts.so /build/reproducible-path/htslib-1.11/debian/tmp/usr/lib/x86_64-linux-gnu/libhts.so.1.11-4 sed -e 's#@-includedir@#/usr/include#g;s#@-libdir@#/usr/lib/x86_64-linux-gnu#g;s#@-PACKAGE_VERSION@#1.11-4#g' htslib.pc.tmp > /build/reproducible-path/htslib-1.11/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig/htslib.pc +chmod 644 /build/reproducible-path/htslib-1.11/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig/htslib.pc ln -sf libhts.so.1.11-4 /build/reproducible-path/htslib-1.11/debian/tmp/usr/lib/x86_64-linux-gnu/libhts.so ln -sf libhts.so.1.11-4 /build/reproducible-path/htslib-1.11/debian/tmp/usr/lib/x86_64-linux-gnu/libhts.so.3 -chmod 644 /build/reproducible-path/htslib-1.11/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig/htslib.pc install -p bgzip htsfile tabix /build/reproducible-path/htslib-1.11/debian/tmp/usr/bin if test -n "hfile_libcurl.so hfile_gcs.so hfile_s3.so hfile_s3_write.so"; then install -p hfile_libcurl.so hfile_gcs.so hfile_s3.so hfile_s3_write.so /build/reproducible-path/htslib-1.11/debian/tmp/htslib; fi install -p -m 644 htslib/*.h /build/reproducible-path/htslib-1.11/debian/tmp/usr/include/htslib @@ -3320,14 +3355,14 @@ man-recode --to-code UTF-8 --suffix .dh-new debian/tabix/usr/share/man/man1/bgzip.1 man-recode --to-code UTF-8 --suffix .dh-new debian/tabix/usr/share/man/man1/tabix.1 man-recode --to-code UTF-8 --suffix .dh-new debian/tabix/usr/share/man/man1/htsfile.1 - mv debian/libhts3/usr/share/man/man5/vcf.5.dh-new debian/libhts3/usr/share/man/man5/vcf.5 - chmod 0644 -- debian/libhts3/usr/share/man/man5/vcf.5 + mv debian/tabix/usr/share/man/man1/tabix.1.dh-new debian/tabix/usr/share/man/man1/tabix.1 + chmod 0644 -- debian/tabix/usr/share/man/man1/tabix.1 mv debian/libhts3/usr/share/man/man5/faidx.5.dh-new debian/libhts3/usr/share/man/man5/faidx.5 chmod 0644 -- debian/libhts3/usr/share/man/man5/faidx.5 + mv debian/libhts3/usr/share/man/man5/vcf.5.dh-new debian/libhts3/usr/share/man/man5/vcf.5 + chmod 0644 -- debian/libhts3/usr/share/man/man5/vcf.5 mv debian/libhts3/usr/share/man/man5/sam.5.dh-new debian/libhts3/usr/share/man/man5/sam.5 chmod 0644 -- debian/libhts3/usr/share/man/man5/sam.5 - mv debian/tabix/usr/share/man/man1/tabix.1.dh-new debian/tabix/usr/share/man/man1/tabix.1 - chmod 0644 -- debian/tabix/usr/share/man/man1/tabix.1 mv debian/tabix/usr/share/man/man1/bgzip.1.dh-new debian/tabix/usr/share/man/man1/bgzip.1 chmod 0644 -- debian/tabix/usr/share/man/man1/bgzip.1 mv debian/libhts3/usr/share/man/man7/htslib-s3-plugin.7.dh-new debian/libhts3/usr/share/man/man7/htslib-s3-plugin.7 @@ -3349,19 +3384,19 @@ ln -s tabix.1.gz debian/tabix/usr/share/man/man1/bgzip.1.gz dh_strip_nondeterminism dh_compress + cd debian/libhts3 cd debian/libhts-dev cd debian/htslib-test - cd debian/libhts3 cd debian/tabix chmod a-x usr/share/doc/libhts-dev/README.large_positions.md usr/share/doc/libhts-dev/changelog usr/share/doc/libhts-dev/changelog.Debian chmod a-x usr/share/doc/libhts3/changelog usr/share/doc/libhts3/changelog.Debian usr/share/man/man5/faidx.5 usr/share/man/man5/sam.5 usr/share/man/man5/vcf.5 usr/share/man/man7/htslib-s3-plugin.7 - chmod a-x usr/share/doc/htslib-test/changelog usr/share/doc/htslib-test/changelog.Debian gzip -9nf usr/share/doc/libhts-dev/README.large_positions.md usr/share/doc/libhts-dev/changelog usr/share/doc/libhts-dev/changelog.Debian - gzip -9nf usr/share/doc/htslib-test/changelog usr/share/doc/htslib-test/changelog.Debian gzip -9nf usr/share/doc/libhts3/changelog usr/share/doc/libhts3/changelog.Debian usr/share/man/man5/faidx.5 usr/share/man/man5/sam.5 usr/share/man/man5/vcf.5 usr/share/man/man7/htslib-s3-plugin.7 chmod a-x usr/share/doc/tabix/changelog usr/share/doc/tabix/changelog.Debian usr/share/man/man1/bgzip.1 usr/share/man/man1/htsfile.1 usr/share/man/man1/tabix.1 - cd '/build/reproducible-path/htslib-1.11' + chmod a-x usr/share/doc/htslib-test/changelog usr/share/doc/htslib-test/changelog.Debian gzip -9nf usr/share/doc/tabix/changelog usr/share/doc/tabix/changelog.Debian usr/share/man/man1/bgzip.1 usr/share/man/man1/htsfile.1 usr/share/man/man1/tabix.1 + gzip -9nf usr/share/doc/htslib-test/changelog usr/share/doc/htslib-test/changelog.Debian + cd '/build/reproducible-path/htslib-1.11' cd '/build/reproducible-path/htslib-1.11' cd '/build/reproducible-path/htslib-1.11' cd '/build/reproducible-path/htslib-1.11' @@ -3370,27 +3405,27 @@ make[1]: Entering directory '/build/reproducible-path/htslib-1.11' dh_fixperms find debian/libhts3 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s - find debian/htslib-test ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libhts-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s + find debian/htslib-test ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/tabix ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libhts3/usr/share/doc -type f -a -true -a ! -regex 'debian/libhts3/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/libhts-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libhts-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix/usr/share/doc -type f -a -true -a ! -regex 'debian/tabix/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/htslib-test/usr/share/doc -type f -a -true -a ! -regex 'debian/htslib-test/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts3/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 - find debian/libhts-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libhts-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/htslib-test/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 + find debian/libhts-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/tabix/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 + find debian/htslib-test/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libhts3/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/libhts-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 - find debian/htslib-test/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/tabix/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/htslib-test -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/tabix/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/htslib-test/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts3 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/libhts-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/htslib-test -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts3/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/tabix/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x - find debian/libhts-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian -name simple_test_driver.sh -exec chmod +x \{\} \; make[1]: Leaving directory '/build/reproducible-path/htslib-1.11' @@ -3428,18 +3463,32 @@ objcopy --add-gnu-debuglink debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/4d/3ca91b29ba967fcf31ca6888537aa6809c595e.debug debian/libhts3/usr/lib/x86_64-linux-gnu/libhts.so.1.11-4 install -d debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/14 objcopy --only-keep-debug --compress-debug-sections debian/libhts3/usr/lib/x86_64-linux-gnu/htslib/hfile_s3_write.so debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/14/e9e170e23367cb4f97f64bdbc9f92fa73a3803.debug + chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/10/41155af2872abe7560e0ce9c2754fb6c6a8097.debug + strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/htsfile + objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/10/41155af2872abe7560e0ce9c2754fb6c6a8097.debug debian/tabix/usr/bin/htsfile chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/14/e9e170e23367cb4f97f64bdbc9f92fa73a3803.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3/usr/lib/x86_64-linux-gnu/htslib/hfile_s3_write.so + install -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/ee + objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/bgzip debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/ee/67e93c48f2427684d32124c7d2eceda2cd9bff.debug objcopy --add-gnu-debuglink debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/14/e9e170e23367cb4f97f64bdbc9f92fa73a3803.debug debian/libhts3/usr/lib/x86_64-linux-gnu/htslib/hfile_s3_write.so install -d debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/d4 objcopy --only-keep-debug --compress-debug-sections debian/libhts3/usr/lib/x86_64-linux-gnu/htslib/hfile_s3.so debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/d4/07300f6b99e2a05f4f02a8c5058e331e98f550.debug + chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/ee/67e93c48f2427684d32124c7d2eceda2cd9bff.debug + strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/bgzip chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/d4/07300f6b99e2a05f4f02a8c5058e331e98f550.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3/usr/lib/x86_64-linux-gnu/htslib/hfile_s3.so + objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/ee/67e93c48f2427684d32124c7d2eceda2cd9bff.debug debian/tabix/usr/bin/bgzip objcopy --add-gnu-debuglink debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/d4/07300f6b99e2a05f4f02a8c5058e331e98f550.debug debian/libhts3/usr/lib/x86_64-linux-gnu/htslib/hfile_s3.so + install -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.dwz + cp --reflink=auto -a debian/tabix/usr/lib/debug/.dwz/x86_64-linux-gnu debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.dwz + rm -fr debian/tabix/usr/lib/debug/.dwz install -d debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/ee objcopy --only-keep-debug --compress-debug-sections debian/libhts3/usr/lib/x86_64-linux-gnu/htslib/hfile_libcurl.so debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/ee/905fccf386876cc8325d28c0d87025bb829d8e.debug + rmdir -p --ignore-fail-on-non-empty debian/tabix/usr/lib/debug chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/ee/905fccf386876cc8325d28c0d87025bb829d8e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3/usr/lib/x86_64-linux-gnu/htslib/hfile_libcurl.so + install -d debian/.debhelper/tabix/dbgsym-root/usr/share/doc + ln -s tabix debian/.debhelper/tabix/dbgsym-root/usr/share/doc/tabix-dbgsym objcopy --add-gnu-debuglink debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/ee/905fccf386876cc8325d28c0d87025bb829d8e.debug debian/libhts3/usr/lib/x86_64-linux-gnu/htslib/hfile_libcurl.so install -d debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/7d objcopy --only-keep-debug --compress-debug-sections debian/libhts3/usr/lib/x86_64-linux-gnu/htslib/hfile_gcs.so debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/7d/ec25a00ddf3d6b2780178cd7d403ba1677f8c4.debug @@ -3448,24 +3497,10 @@ objcopy --add-gnu-debuglink debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/7d/ec25a00ddf3d6b2780178cd7d403ba1677f8c4.debug debian/libhts3/usr/lib/x86_64-linux-gnu/htslib/hfile_gcs.so install -d debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/libhts3/usr/lib/debug/.dwz/x86_64-linux-gnu debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.dwz - chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/10/41155af2872abe7560e0ce9c2754fb6c6a8097.debug - strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/htsfile rm -fr debian/libhts3/usr/lib/debug/.dwz - objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/10/41155af2872abe7560e0ce9c2754fb6c6a8097.debug debian/tabix/usr/bin/htsfile rmdir -p --ignore-fail-on-non-empty debian/libhts3/usr/lib/debug install -d debian/.debhelper/libhts3/dbgsym-root/usr/share/doc ln -s libhts3 debian/.debhelper/libhts3/dbgsym-root/usr/share/doc/libhts3-dbgsym - install -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/ee - objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/bgzip debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/ee/67e93c48f2427684d32124c7d2eceda2cd9bff.debug - chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/ee/67e93c48f2427684d32124c7d2eceda2cd9bff.debug - strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/bgzip - objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/ee/67e93c48f2427684d32124c7d2eceda2cd9bff.debug debian/tabix/usr/bin/bgzip - install -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.dwz - cp --reflink=auto -a debian/tabix/usr/lib/debug/.dwz/x86_64-linux-gnu debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.dwz - rm -fr debian/tabix/usr/lib/debug/.dwz - rmdir -p --ignore-fail-on-non-empty debian/tabix/usr/lib/debug - install -d debian/.debhelper/tabix/dbgsym-root/usr/share/doc - ln -s tabix debian/.debhelper/tabix/dbgsym-root/usr/share/doc/tabix-dbgsym make[1]: Leaving directory '/build/reproducible-path/htslib-1.11' dh_makeshlibs -a rm -f debian/libhts3/DEBIAN/shlibs @@ -3477,9 +3512,9 @@ rm -f debian/libhts-dev/DEBIAN/shlibs rm -f debian/tabix/DEBIAN/shlibs dh_shlibdeps -a - dpkg-shlibdeps -Tdebian/libhts3.substvars debian/libhts3/usr/lib/x86_64-linux-gnu/libhts.so.1.11-4 debian/libhts3/usr/lib/x86_64-linux-gnu/htslib/hfile_gcs.so debian/libhts3/usr/lib/x86_64-linux-gnu/htslib/hfile_libcurl.so debian/libhts3/usr/lib/x86_64-linux-gnu/htslib/hfile_s3.so debian/libhts3/usr/lib/x86_64-linux-gnu/htslib/hfile_s3_write.so install -d debian/tabix/DEBIAN dpkg-shlibdeps -Tdebian/tabix.substvars debian/tabix/usr/bin/bgzip debian/tabix/usr/bin/htsfile debian/tabix/usr/bin/tabix + dpkg-shlibdeps -Tdebian/libhts3.substvars debian/libhts3/usr/lib/x86_64-linux-gnu/libhts.so.1.11-4 debian/libhts3/usr/lib/x86_64-linux-gnu/htslib/hfile_gcs.so debian/libhts3/usr/lib/x86_64-linux-gnu/htslib/hfile_libcurl.so debian/libhts3/usr/lib/x86_64-linux-gnu/htslib/hfile_s3.so debian/libhts3/usr/lib/x86_64-linux-gnu/htslib/hfile_s3_write.so dh_installdeb install -p -m0644 debian/.debhelper/generated/libhts3/triggers debian/libhts3/DEBIAN/triggers install -d debian/libhts-dev/DEBIAN @@ -3491,48 +3526,48 @@ echo misc:Depends= >> debian/htslib-test.substvars echo misc:Pre-Depends= >> debian/htslib-test.substvars dpkg-gencontrol -phtslib-test -ldebian/changelog -Tdebian/htslib-test.substvars -Pdebian/htslib-test - echo misc:Depends= >> debian/tabix.substvars - echo misc:Pre-Depends= >> debian/tabix.substvars - install -d debian/.debhelper/tabix/dbgsym-root/DEBIAN - dpkg-gencontrol -ptabix -ldebian/changelog -Tdebian/tabix.substvars -Pdebian/.debhelper/tabix/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=tabix-dbgsym "-DDepends=tabix (= \${binary:Version})" "-DDescription=debug symbols for tabix" "-DBuild-Ids=1041155af2872abe7560e0ce9c2754fb6c6a8097 1bbe27499a3efcaf99dad36fc2055f654a49c0ae ee67e93c48f2427684d32124c7d2eceda2cd9bff" -DSection=debug -UMulti-Arch -UReplaces -UBreaks echo misc:Depends= >> debian/libhts3.substvars echo misc:Pre-Depends= >> debian/libhts3.substvars install -d debian/.debhelper/libhts3/dbgsym-root/DEBIAN dpkg-gencontrol -plibhts3 -ldebian/changelog -Tdebian/libhts3.substvars -Pdebian/.debhelper/libhts3/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=libhts3-dbgsym "-DDepends=libhts3 (= \${binary:Version})" "-DDescription=debug symbols for libhts3" "-DBuild-Ids=14e9e170e23367cb4f97f64bdbc9f92fa73a3803 4d3ca91b29ba967fcf31ca6888537aa6809c595e 7dec25a00ddf3d6b2780178cd7d403ba1677f8c4 d407300f6b99e2a05f4f02a8c5058e331e98f550 ee905fccf386876cc8325d28c0d87025bb829d8e" -DSection=debug -UReplaces -UBreaks - chmod 0644 -- debian/htslib-test/DEBIAN/control + echo misc:Depends= >> debian/tabix.substvars + echo misc:Pre-Depends= >> debian/tabix.substvars + install -d debian/.debhelper/tabix/dbgsym-root/DEBIAN + dpkg-gencontrol -ptabix -ldebian/changelog -Tdebian/tabix.substvars -Pdebian/.debhelper/tabix/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=tabix-dbgsym "-DDepends=tabix (= \${binary:Version})" "-DDescription=debug symbols for tabix" "-DBuild-Ids=1041155af2872abe7560e0ce9c2754fb6c6a8097 1bbe27499a3efcaf99dad36fc2055f654a49c0ae ee67e93c48f2427684d32124c7d2eceda2cd9bff" -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/libhts-dev/DEBIAN/control - chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/DEBIAN/control - dpkg-gencontrol -plibhts3 -ldebian/changelog -Tdebian/libhts3.substvars -Pdebian/libhts3 + chmod 0644 -- debian/htslib-test/DEBIAN/control chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/DEBIAN/control dpkg-gencontrol -ptabix -ldebian/changelog -Tdebian/tabix.substvars -Pdebian/tabix + chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/DEBIAN/control + dpkg-gencontrol -plibhts3 -ldebian/changelog -Tdebian/libhts3.substvars -Pdebian/libhts3 chmod 0644 -- debian/libhts3/DEBIAN/control chmod 0644 -- debian/tabix/DEBIAN/control dh_md5sums - cd debian/libhts3 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libhts-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums + cd debian/libhts3 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/tabix >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/htslib-test >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums - chmod 0644 -- debian/libhts3/DEBIAN/md5sums + chmod 0644 -- debian/libhts-dev/DEBIAN/md5sums chmod 0644 -- debian/tabix/DEBIAN/md5sums - cd debian/.debhelper/libhts3/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums + chmod 0644 -- debian/libhts3/DEBIAN/md5sums cd debian/.debhelper/tabix/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums - chmod 0644 -- debian/libhts-dev/DEBIAN/md5sums - chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/DEBIAN/md5sums - chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/DEBIAN/md5sums + cd debian/.debhelper/libhts3/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/htslib-test/DEBIAN/md5sums + chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/DEBIAN/md5sums + chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/DEBIAN/md5sums dh_builddeb - dpkg-deb --root-owner-group --build debian/libhts3 .. - dpkg-deb --root-owner-group --build debian/.debhelper/libhts3/dbgsym-root .. dpkg-deb --root-owner-group --build debian/libhts-dev .. - dpkg-deb --root-owner-group --build debian/htslib-test .. - dpkg-deb --root-owner-group --build debian/.debhelper/tabix/dbgsym-root .. - dpkg-deb --root-owner-group --build debian/tabix .. + dpkg-deb --root-owner-group --build debian/.debhelper/libhts3/dbgsym-root .. dpkg-deb: building package 'libhts3-dbgsym' in '../libhts3-dbgsym_1.11-4_amd64.deb'. -dpkg-deb: building package 'libhts3' in '../libhts3_1.11-4_amd64.deb'. + dpkg-deb --root-owner-group --build debian/tabix .. + dpkg-deb --root-owner-group --build debian/.debhelper/tabix/dbgsym-root .. + dpkg-deb --root-owner-group --build debian/htslib-test .. + dpkg-deb --root-owner-group --build debian/libhts3 .. dpkg-deb: building package 'libhts-dev' in '../libhts-dev_1.11-4_amd64.deb'. -dpkg-deb: building package 'htslib-test' in '../htslib-test_1.11-4_all.deb'. dpkg-deb: building package 'tabix' in '../tabix_1.11-4_amd64.deb'. dpkg-deb: building package 'tabix-dbgsym' in '../tabix-dbgsym_1.11-4_amd64.deb'. +dpkg-deb: building package 'htslib-test' in '../htslib-test_1.11-4_all.deb'. +dpkg-deb: building package 'libhts3' in '../libhts3_1.11-4_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../htslib_1.11-4_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -3541,12 +3576,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/277327/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/277327/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1520871 and its subdirectories -I: Current time: Sun Jan 7 03:45:03 -12 2024 -I: pbuilder-time-stamp: 1704642303 +I: removing directory /srv/workspace/pbuilder/277327 and its subdirectories +I: Current time: Sun Feb 9 12:11:31 +14 2025 +I: pbuilder-time-stamp: 1739052691