Diff of the two buildlogs: -- --- b1/build.log 2023-07-31 02:20:21.693996047 +0000 +++ b2/build.log 2023-07-31 02:22:21.182008012 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Aug 31 20:34:11 -12 2024 -I: pbuilder-time-stamp: 1725179651 +I: Current time: Mon Jul 31 16:20:24 +14 2023 +I: pbuilder-time-stamp: 1690770024 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -17,8 +17,8 @@ I: copying [./libghemical_3.0.0-4.3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.fLBtKA_M/trustedkeys.kbx': General error -gpgv: Signature made Wed Jun 3 00:14:14 2020 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.TBjScNpc/trustedkeys.kbx': General error +gpgv: Signature made Thu Jun 4 02:14:14 2020 +14 gpgv: using RSA key 82383CE9165B347C787081A2CBE6BB4E5D9AD3A5 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libghemical_3.0.0-4.3.dsc @@ -29,135 +29,166 @@ dpkg-source: info: applying fix-underlinking.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1007125/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3808339/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jul 31 16:20 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3808339/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3808339/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=16 ' - DISTRIBUTION='bullseye' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=15 ' + DIRSTACK=() + DISTRIBUTION=bullseye + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='f2d24bc6d8ef475d8bff5d013ed4b368' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1007125' - PS1='# ' - PS2='> ' + INVOCATION_ID=869fe96145c940e9a06616f8324b9f70 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3808339 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.adMAuY6h/pbuilderrc_nDuU --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.adMAuY6h/b1 --logfile b1/build.log libghemical_3.0.0-4.3.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.adMAuY6h/pbuilderrc_1ew0 --distribution bullseye --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.adMAuY6h/b2 --logfile b2/build.log libghemical_3.0.0-4.3.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 I: uname -a - Linux ionos5-amd64 6.1.0-10-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.38-2 (2023-07-27) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-10-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.38-2 (2023-07-27) x86_64 GNU/Linux I: ls -l /bin total 5476 - -rwxr-xr-x 1 root root 1234376 Mar 27 2022 bash - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat - -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp - -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod - -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown - -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp - -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash - -rwxr-xr-x 1 root root 113664 Sep 23 2020 date - -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd - -rwxr-xr-x 1 root root 93936 Sep 23 2020 df - -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir - -rwxr-xr-x 1 root root 84440 Jan 20 2022 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo - -rwxr-xr-x 1 root root 28 Jan 24 2023 egrep - -rwxr-xr-x 1 root root 39680 Sep 23 2020 false - -rwxr-xr-x 1 root root 28 Jan 24 2023 fgrep - -rwxr-xr-x 1 root root 69032 Jan 20 2022 findmnt - -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount - -rwxr-xr-x 1 root root 203072 Jan 24 2023 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 98048 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln - -rwxr-xr-x 1 root root 56952 Feb 7 2020 login - -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls - -rwxr-xr-x 1 root root 149736 Jan 20 2022 lsblk - -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir - -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod - -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp - -rwxr-xr-x 1 root root 59632 Jan 20 2022 more - -rwsr-xr-x 1 root root 55528 Jan 20 2022 mount - -rwxr-xr-x 1 root root 18664 Jan 20 2022 mountpoint - -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Dec 16 2021 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd - lrwxrwxrwx 1 root root 4 Mar 27 2022 rbash -> bash - -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink - -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm - -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir - -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Aug 8 03:47 sh -> dash - -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep - -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty - -rwsr-xr-x 1 root root 71912 Jan 20 2022 su - -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync - -rwxr-xr-x 1 root root 531928 Feb 16 2021 tar - -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch - -rwxr-xr-x 1 root root 39680 Sep 23 2020 true - -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server - -rwsr-xr-x 1 root root 35040 Jan 20 2022 umount - -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir - -rwxr-xr-x 1 root root 63744 Jan 20 2022 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 5898 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8049 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/1007125/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1234376 Mar 28 2022 bash + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 18424 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 43936 Sep 24 2020 cat + -rwxr-xr-x 1 root root 72672 Sep 24 2020 chgrp + -rwxr-xr-x 1 root root 64448 Sep 24 2020 chmod + -rwxr-xr-x 1 root root 72672 Sep 24 2020 chown + -rwxr-xr-x 1 root root 151168 Sep 24 2020 cp + -rwxr-xr-x 1 root root 125560 Dec 11 2020 dash + -rwxr-xr-x 1 root root 113664 Sep 24 2020 date + -rwxr-xr-x 1 root root 80968 Sep 24 2020 dd + -rwxr-xr-x 1 root root 93936 Sep 24 2020 df + -rwxr-xr-x 1 root root 147176 Sep 24 2020 dir + -rwxr-xr-x 1 root root 84440 Jan 21 2022 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 39712 Sep 24 2020 echo + -rwxr-xr-x 1 root root 28 Jan 25 2023 egrep + -rwxr-xr-x 1 root root 39680 Sep 24 2020 false + -rwxr-xr-x 1 root root 28 Jan 25 2023 fgrep + -rwxr-xr-x 1 root root 69032 Jan 21 2022 findmnt + -rwsr-xr-x 1 root root 34896 Feb 27 2021 fusermount + -rwxr-xr-x 1 root root 203072 Jan 25 2023 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 98048 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 22600 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 72840 Sep 24 2020 ln + -rwxr-xr-x 1 root root 56952 Feb 8 2020 login + -rwxr-xr-x 1 root root 147176 Sep 24 2020 ls + -rwxr-xr-x 1 root root 149736 Jan 21 2022 lsblk + -rwxr-xr-x 1 root root 85184 Sep 24 2020 mkdir + -rwxr-xr-x 1 root root 76896 Sep 24 2020 mknod + -rwxr-xr-x 1 root root 48064 Sep 24 2020 mktemp + -rwxr-xr-x 1 root root 59632 Jan 21 2022 more + -rwsr-xr-x 1 root root 55528 Jan 21 2022 mount + -rwxr-xr-x 1 root root 18664 Jan 21 2022 mountpoint + -rwxr-xr-x 1 root root 147080 Sep 24 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Dec 17 2021 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 43872 Sep 24 2020 pwd + lrwxrwxrwx 1 root root 4 Mar 28 2022 rbash -> bash + -rwxr-xr-x 1 root root 52032 Sep 24 2020 readlink + -rwxr-xr-x 1 root root 72704 Sep 24 2020 rm + -rwxr-xr-x 1 root root 52032 Sep 24 2020 rmdir + -rwxr-xr-x 1 root root 27472 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed + lrwxrwxrwx 1 root root 9 Jul 31 16:20 sh -> /bin/bash + -rwxr-xr-x 1 root root 43808 Sep 24 2020 sleep + -rwxr-xr-x 1 root root 84928 Sep 24 2020 stty + -rwsr-xr-x 1 root root 71912 Jan 21 2022 su + -rwxr-xr-x 1 root root 39744 Sep 24 2020 sync + -rwxr-xr-x 1 root root 531928 Feb 17 2021 tar + -rwxr-xr-x 1 root root 14456 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 101408 Sep 24 2020 touch + -rwxr-xr-x 1 root root 39680 Sep 24 2020 true + -rwxr-xr-x 1 root root 14328 Feb 27 2021 ulockmgr_server + -rwsr-xr-x 1 root root 35040 Jan 21 2022 umount + -rwxr-xr-x 1 root root 39744 Sep 24 2020 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 147176 Sep 24 2020 vdir + -rwxr-xr-x 1 root root 63744 Jan 21 2022 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 5898 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8049 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/3808339/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -411,7 +442,7 @@ Get: 195 http://deb.debian.org/debian bullseye/main amd64 mpi-default-dev amd64 1.13 [5476 B] Get: 196 http://deb.debian.org/debian bullseye/main amd64 libsc-dev amd64 2.3.1-21 [317 kB] Get: 197 http://deb.debian.org/debian bullseye/main amd64 mesa-common-dev amd64 20.3.5-1 [1287 kB] -Fetched 117 MB in 4s (30.2 MB/s) +Fetched 117 MB in 2s (58.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19707 files and directories currently installed.) @@ -1240,7 +1271,11 @@ fakeroot is already the newest version (1.25.3-1.1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/libghemical-3.0.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libghemical_3.0.0-4.3_source.changes +I: user script /srv/workspace/pbuilder/3808339/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for bullseye +I: user script /srv/workspace/pbuilder/3808339/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/libghemical-3.0.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libghemical_3.0.0-4.3_source.changes dpkg-buildpackage: info: source package libghemical dpkg-buildpackage: info: source version 3.0.0-4.3 dpkg-buildpackage: info: source distribution unstable @@ -1363,7 +1398,7 @@ checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for ar... /usr/bin/ar -checking for sh... /bin/bash +checking for sh... /bin/sh checking whether make sets $(MAKE)... (cached) yes checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes @@ -1444,44 +1479,42 @@ config.status: executing po/stamp-it commands make[1]: Leaving directory '/build/libghemical-3.0.0' dh_auto_build - make -j16 + make -j15 make[1]: Entering directory '/build/libghemical-3.0.0' Making all in src make[2]: Entering directory '/build/libghemical-3.0.0/src' make all-am make[3]: Entering directory '/build/libghemical-3.0.0/src' -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atom.lo atom.cpp -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o bond.lo bond.cpp -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o constraint.lo constraint.cpp -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o model.lo model.cpp -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o engine.lo engine.cpp -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time 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-DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_mm_tripos52.cpp -fPIC -DPIC -o .libs/eng1_mm_tripos52.o +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_qm.cpp -fPIC -DPIC -o .libs/eng1_qm.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c atom.cpp -fPIC -DPIC -o .libs/atom.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_qm_mpqc.cpp -fPIC -DPIC -o .libs/eng1_qm_mpqc.o -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c tab_mm_tripos52.cpp -fPIC -DPIC -o .libs/tab_mm_tripos52.o -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c seqbuild.cpp -fPIC -DPIC -o .libs/seqbuild.o -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c mfinder.cpp -fPIC -DPIC -o .libs/mfinder.o +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c constraint.cpp -fPIC -DPIC -o .libs/constraint.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c typerule.cpp -fPIC -DPIC -o .libs/typerule.o -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_qm.cpp -fPIC -DPIC -o .libs/eng1_qm.o +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c mfinder.cpp -fPIC -DPIC -o .libs/mfinder.o +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c utility.cpp -fPIC -DPIC -o .libs/utility.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_qm_mopac.cpp -fPIC -DPIC -o .libs/eng1_qm_mopac.o +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c chn_info.cpp -fPIC -DPIC -o .libs/chn_info.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_mm.cpp -fPIC -DPIC -o .libs/eng1_mm.o -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_mm_tripos52.cpp -fPIC -DPIC -o .libs/eng1_mm_tripos52.o In file included from local_i18n.h:38, from model.cpp:46: libghemicalconfig.h:102: warning: "PACKAGE_NAME" redefined @@ -1539,6 +1572,58 @@ 293 | #define PACKAGE_VERSION "" | In file included from local_i18n.h:38, + from eng1_qm.cpp:27: +libghemicalconfig.h:102: warning: "PACKAGE_NAME" redefined + 102 | #define PACKAGE_NAME "libghemical" + | +In file included from /usr/include/sc/util/misc/exenv.h:37, + from /usr/include/sc/util/class/class.h:46, + from /usr/include/sc/util/keyval/keyval.h:42, + from eng1_qm_mpqc.h:37, + from eng1_qm.cpp:24: +/usr/include/sc/scconfig.h:281: note: this is the location of the previous definition + 281 | #define PACKAGE_NAME "" + | +In file included from local_i18n.h:38, + from eng1_qm.cpp:27: +libghemicalconfig.h:105: warning: "PACKAGE_STRING" redefined + 105 | #define PACKAGE_STRING "libghemical 3.0.0" + | +In file included from /usr/include/sc/util/misc/exenv.h:37, + from /usr/include/sc/util/class/class.h:46, + from /usr/include/sc/util/keyval/keyval.h:42, + from eng1_qm_mpqc.h:37, + from eng1_qm.cpp:24: +/usr/include/sc/scconfig.h:284: note: this is the location of the previous definition + 284 | #define PACKAGE_STRING "" + | +In file included from local_i18n.h:38, + from eng1_qm.cpp:27: +libghemicalconfig.h:108: warning: "PACKAGE_TARNAME" redefined + 108 | #define PACKAGE_TARNAME "libghemical" + | +In file included from /usr/include/sc/util/misc/exenv.h:37, + from /usr/include/sc/util/class/class.h:46, + from /usr/include/sc/util/keyval/keyval.h:42, + from eng1_qm_mpqc.h:37, + from eng1_qm.cpp:24: +/usr/include/sc/scconfig.h:287: note: this is the location of the previous definition + 287 | #define PACKAGE_TARNAME "" + | +In file included from local_i18n.h:38, + from eng1_qm.cpp:27: +libghemicalconfig.h:114: warning: "PACKAGE_VERSION" redefined + 114 | #define PACKAGE_VERSION "3.0.0" + | +In file included from /usr/include/sc/util/misc/exenv.h:37, + from /usr/include/sc/util/class/class.h:46, + from /usr/include/sc/util/keyval/keyval.h:42, + from eng1_qm_mpqc.h:37, + from eng1_qm.cpp:24: +/usr/include/sc/scconfig.h:293: note: this is the location of the previous definition + 293 | #define PACKAGE_VERSION "" + | +In file included from local_i18n.h:38, from eng1_qm_mpqc.cpp:24: libghemicalconfig.h:102: warning: "PACKAGE_NAME" redefined 102 | #define PACKAGE_NAME "libghemical" @@ -1638,67 +1723,12 @@ libghemicalconfig.h:114: note: this is the location of the previous definition 114 | #define PACKAGE_VERSION "3.0.0" | -In file included from local_i18n.h:38, - from eng1_qm.cpp:27: -libghemicalconfig.h:102: warning: "PACKAGE_NAME" redefined - 102 | #define PACKAGE_NAME "libghemical" - | -In file included from /usr/include/sc/util/misc/exenv.h:37, - from /usr/include/sc/util/class/class.h:46, - from /usr/include/sc/util/keyval/keyval.h:42, - from eng1_qm_mpqc.h:37, - from eng1_qm.cpp:24: -/usr/include/sc/scconfig.h:281: note: this is the location of the previous definition - 281 | #define PACKAGE_NAME "" - | -In file included from local_i18n.h:38, - from eng1_qm.cpp:27: -libghemicalconfig.h:105: warning: "PACKAGE_STRING" redefined - 105 | #define PACKAGE_STRING "libghemical 3.0.0" - | -In file included from /usr/include/sc/util/misc/exenv.h:37, - from /usr/include/sc/util/class/class.h:46, - from /usr/include/sc/util/keyval/keyval.h:42, - from eng1_qm_mpqc.h:37, - from eng1_qm.cpp:24: -/usr/include/sc/scconfig.h:284: note: this is the location of the previous definition - 284 | #define PACKAGE_STRING "" - | -In file included from local_i18n.h:38, - from eng1_qm.cpp:27: -libghemicalconfig.h:108: warning: "PACKAGE_TARNAME" redefined - 108 | #define PACKAGE_TARNAME "libghemical" - | -In file included from /usr/include/sc/util/misc/exenv.h:37, - from /usr/include/sc/util/class/class.h:46, - from /usr/include/sc/util/keyval/keyval.h:42, - from eng1_qm_mpqc.h:37, - from eng1_qm.cpp:24: -/usr/include/sc/scconfig.h:287: note: this is the location of the previous definition - 287 | #define PACKAGE_TARNAME "" - | -In file included from local_i18n.h:38, - from eng1_qm.cpp:27: -libghemicalconfig.h:114: warning: "PACKAGE_VERSION" redefined - 114 | #define PACKAGE_VERSION "3.0.0" - | -In file included from /usr/include/sc/util/misc/exenv.h:37, - from /usr/include/sc/util/class/class.h:46, - from /usr/include/sc/util/keyval/keyval.h:42, - from eng1_qm_mpqc.h:37, - from eng1_qm.cpp:24: -/usr/include/sc/scconfig.h:293: note: this is the location of the previous definition - 293 | #define PACKAGE_VERSION "" - | -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c constraint.cpp -o constraint.o >/dev/null 2>&1 atom.cpp:33:44: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 33 | element element::current_element = element("C"); | ^~~ -typerule.cpp: In member function 'i32s typerule::ReadSubRule(std::istream*, std::ostream*)': -typerule.cpp:172:28: warning: narrowing conversion of 'strlen(((const char*)((char*)(&((typerule*)this)->typerule::buffer))))' from 'size_t' {aka 'long unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] - 172 | i32s tmp1[2] = { strlen(buffer), 0 }; - | ~~~~~~^~~~~~~~ -In file included from eng1_qm.cpp:22: +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c constraint.cpp -o constraint.o >/dev/null 2>&1 +In file included from eng1_qm_mpqc.h:32, + from eng1_qm_mpqc.cpp:22: eng1_qm.h: In member function 'virtual bool eng1_qm::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng1_qm.h:128:148: warning: no return statement in function returning non-void [-Wreturn-type] 128 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } @@ -1707,8 +1737,7 @@ eng1_qm.h:129:135: warning: no return statement in function returning non-void [-Wreturn-type] 129 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ -In file included from eng1_qm_mopac.h:30, - from eng1_qm_mopac.cpp:22: +In file included from eng1_qm.cpp:22: eng1_qm.h: In member function 'virtual bool eng1_qm::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng1_qm.h:128:148: warning: no return statement in function returning non-void [-Wreturn-type] 128 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } @@ -1717,8 +1746,7 @@ eng1_qm.h:129:135: warning: no return statement in function returning non-void [-Wreturn-type] 129 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ -In file included from eng1_qm_mpqc.h:32, - from eng1_qm_mpqc.cpp:22: +In file included from model.cpp:31: eng1_qm.h: In member function 'virtual bool eng1_qm::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng1_qm.h:128:148: warning: no return statement in function returning non-void [-Wreturn-type] 128 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } @@ -1727,7 +1755,10 @@ eng1_qm.h:129:135: warning: no return statement in function returning non-void [-Wreturn-type] 129 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c chn_info.cpp -o chn_info.o >/dev/null 2>&1 +typerule.cpp: In member function 'i32s typerule::ReadSubRule(std::istream*, std::ostream*)': +typerule.cpp:172:28: warning: narrowing conversion of 'strlen(((const char*)((char*)(&((typerule*)this)->typerule::buffer))))' from 'size_t' {aka 'long unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] + 172 | i32s tmp1[2] = { strlen(buffer), 0 }; + | ~~~~~~^~~~~~~~ utility.cpp: In function 'void DefineSecondaryStructure(model*)': utility.cpp:308:21: warning: narrowing conversion of 'n1' from 'i32u' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 308 | i32s tmp1[2] = { n1, n2 }; @@ -1784,29 +1815,8 @@ 370 | i32s t8a[2] = { n1, n3 - 1 }; i32s t8b[2] = { n1, n2 + 1 }; | ^~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c atom.cpp -o atom.o >/dev/null 2>&1 -eng1_qm_mopac.cpp: In destructor 'eng1_qm_mopac::~eng1_qm_mopac()': -eng1_qm_mopac.cpp:153:8: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 153 | system(cs_FOR005.str().c_str()); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -eng1_qm_mopac.cpp:157:8: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 157 | system(cs_SHUTDOWN.str().c_str()); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -eng1_qm_mopac.cpp: In destructor 'virtual eng1_qm_mopac::~eng1_qm_mopac()': -eng1_qm_mopac.cpp:153:8: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 153 | system(cs_FOR005.str().c_str()); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -eng1_qm_mopac.cpp:157:8: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 157 | system(cs_SHUTDOWN.str().c_str()); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -eng1_qm_mopac.cpp: In member function 'void eng1_qm_mopac::FixMeLaterTSS()': -eng1_qm_mopac.cpp:178:8: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 178 | system(cs_FOR005.str().c_str()); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -eng1_qm_mopac.cpp:181:8: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 181 | system(cs_SHUTDOWN.str().c_str()); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c bond.cpp -o bond.o >/dev/null 2>&1 -In file included from model.cpp:31: +In file included from eng1_qm_mopac.h:30, + from eng1_qm_mopac.cpp:22: eng1_qm.h: In member function 'virtual bool eng1_qm::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng1_qm.h:128:148: warning: no return statement in function returning non-void [-Wreturn-type] 128 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } @@ -1815,8 +1825,7 @@ eng1_qm.h:129:135: warning: no return statement in function returning non-void [-Wreturn-type] 129 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o eng1_mm_default.lo eng1_mm_default.cpp -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_mm_default.cpp -fPIC -DPIC -o .libs/eng1_mm_default.o +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c chn_info.cpp -o chn_info.o >/dev/null 2>&1 In file included from model.cpp:35: eng2_qm_mm.h: In member function 'virtual bool eng2_qm_mm_mopac::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng2_qm_mm.h:90:148: warning: no return statement in function returning non-void [-Wreturn-type] @@ -1834,39 +1843,62 @@ eng2_qm_mm.h:128:135: warning: no return statement in function returning non-void [-Wreturn-type] 128 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o tab_mm_default.lo tab_mm_default.cpp -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c typerule.cpp -o typerule.o >/dev/null 2>&1 -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c utility.cpp -o utility.o >/dev/null 2>&1 +eng1_qm_mopac.cpp: In destructor 'eng1_qm_mopac::~eng1_qm_mopac()': +eng1_qm_mopac.cpp:153:8: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 153 | system(cs_FOR005.str().c_str()); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +eng1_qm_mopac.cpp:157:8: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 157 | system(cs_SHUTDOWN.str().c_str()); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +eng1_qm_mopac.cpp: In destructor 'virtual eng1_qm_mopac::~eng1_qm_mopac()': +eng1_qm_mopac.cpp:153:8: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 153 | system(cs_FOR005.str().c_str()); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +eng1_qm_mopac.cpp:157:8: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 157 | system(cs_SHUTDOWN.str().c_str()); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +eng1_qm_mopac.cpp: In member function 'void eng1_qm_mopac::FixMeLaterTSS()': +eng1_qm_mopac.cpp:178:8: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 178 | system(cs_FOR005.str().c_str()); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +eng1_qm_mopac.cpp:181:8: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 181 | system(cs_SHUTDOWN.str().c_str()); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c bond.cpp -o bond.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_qm.cpp -o eng1_qm.o >/dev/null 2>&1 -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_mm.cpp -o eng1_mm.o >/dev/null 2>&1 -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c tab_mm_default.cpp -fPIC -DPIC -o .libs/tab_mm_default.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o eng1_mm_prmfit.lo eng1_mm_prmfit.cpp -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_qm_mopac.cpp -o eng1_qm_mopac.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o tab_mm_prmfit.lo tab_mm_prmfit.cpp -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_mm_prmfit.cpp -fPIC -DPIC -o .libs/eng1_mm_prmfit.o -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c tab_mm_prmfit.cpp -fPIC -DPIC -o .libs/tab_mm_prmfit.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o tab_mm_tripos52.lo tab_mm_tripos52.cpp +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c utility.cpp -o utility.o >/dev/null 2>&1 model.cpp: In member function 'bool model::GetCRDSetVisible(i32u)': model.cpp:319:23: warning: control reaches end of non-void function [-Wreturn-type] 319 | else assertion_failed(__FILE__, __LINE__, "index overflow"); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c mfinder.cpp -o mfinder.o >/dev/null 2>&1 +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c typerule.cpp -o typerule.o >/dev/null 2>&1 +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c tab_mm_tripos52.cpp -fPIC -DPIC -o .libs/tab_mm_tripos52.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o eng1_mm_default.lo eng1_mm_default.cpp +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_mm.cpp -o eng1_mm.o >/dev/null 2>&1 +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o tab_mm_default.lo tab_mm_default.cpp +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_mm_default.cpp -fPIC -DPIC -o .libs/eng1_mm_default.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include 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-fstack-protector-strong -Wformat -Werror=format-security -c -o notice.lo notice.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng2_qm_mm.cpp -fPIC -DPIC -o .libs/eng2_qm_mm.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o conjgrad.lo conjgrad.cpp -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o intcrd.lo intcrd.cpp -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c notice.cpp -fPIC -DPIC -o .libs/notice.o -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c conjgrad.cpp -fPIC -DPIC -o .libs/conjgrad.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o conjgrad.lo conjgrad.cpp In file included from local_i18n.h:38, from eng2_qm_mm.cpp:24: libghemicalconfig.h:102: warning: "PACKAGE_NAME" redefined @@ -1923,7 +1955,11 @@ /usr/include/sc/scconfig.h:293: note: this is the location of the previous definition 293 | #define PACKAGE_VERSION "" | -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c intcrd.cpp -fPIC -DPIC -o .libs/intcrd.o +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c notice.cpp -fPIC -DPIC -o .libs/notice.o +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c tab_mm_tripos52.cpp -o tab_mm_tripos52.o >/dev/null 2>&1 +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c conjgrad.cpp -fPIC -DPIC -o .libs/conjgrad.o +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_mm_tripos52.cpp -o eng1_mm_tripos52.o >/dev/null 2>&1 +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c notice.cpp -o notice.o >/dev/null 2>&1 In file included from eng2_qm_mm.h:28, from eng2_qm_mm.cpp:22: eng1_qm.h: In member function 'virtual bool eng1_qm::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': @@ -1934,9 +1970,7 @@ eng1_qm.h:129:135: warning: no return statement in function returning non-void [-Wreturn-type] 129 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_qm_mpqc.cpp -o eng1_qm_mpqc.o >/dev/null 2>&1 -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_mm_tripos52.cpp -o eng1_mm_tripos52.o >/dev/null 2>&1 -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c notice.cpp -o notice.o >/dev/null 2>&1 +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o intcrd.lo intcrd.cpp In file included from eng2_qm_mm.cpp:22: eng2_qm_mm.h: In member function 'virtual bool eng2_qm_mm_mopac::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng2_qm_mm.h:90:148: warning: no return statement in function returning non-void [-Wreturn-type] @@ -1954,20 +1988,15 @@ eng2_qm_mm.h:128:135: warning: no return statement in function returning non-void [-Wreturn-type] 128 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread 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-fstack-protector-strong -Wformat -Werror=format-security -c -o search.lo search.cpp -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng2_qm_mm.cpp -o eng2_qm_mm.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o geomopt.lo geomopt.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c search.cpp -fPIC -DPIC -o .libs/search.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o geomopt.lo geomopt.cpp +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng2_qm_mm.cpp -o eng2_qm_mm.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c geomopt.cpp -fPIC -DPIC -o .libs/geomopt.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o moldyn.lo moldyn.cpp -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o pop_ana.lo pop_ana.cpp -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c moldyn.cpp -fPIC -DPIC -o .libs/moldyn.o -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c intcrd.cpp -o intcrd.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sasaeval.lo sasaeval.cpp -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c pop_ana.cpp -fPIC -DPIC -o .libs/pop_ana.o -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c sasaeval.cpp -fPIC -DPIC -o .libs/sasaeval.o +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c seqbuild.cpp -o seqbuild.o >/dev/null 2>&1 +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o moldyn.lo moldyn.cpp In file included from search.h:35, from search.cpp:22: eng1_qm.h: In member function 'virtual bool eng1_qm::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': @@ -1978,6 +2007,7 @@ eng1_qm.h:129:135: warning: no return statement in function returning non-void [-Wreturn-type] 129 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c tab_mm_prmfit.cpp -o tab_mm_prmfit.o >/dev/null 2>&1 In file included from geomopt.h:31, from geomopt.cpp:22: eng1_qm.h: In member function 'virtual bool eng1_qm::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': @@ -1988,7 +2018,20 @@ eng1_qm.h:129:135: warning: no return statement in function returning non-void [-Wreturn-type] 129 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c moldyn.cpp -fPIC -DPIC -o .libs/moldyn.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c geomopt.cpp -o geomopt.o >/dev/null 2>&1 +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c intcrd.cpp -o intcrd.o >/dev/null 2>&1 +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include 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-fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c pop_ana.cpp -fPIC -DPIC -o .libs/pop_ana.o +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c tab_mm_default.cpp -o tab_mm_default.o >/dev/null 2>&1 +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c sasaeval.cpp -fPIC -DPIC -o .libs/sasaeval.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o resonance.lo resonance.cpp +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c moldyn.cpp -o moldyn.o >/dev/null 2>&1 +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c resonance.cpp -fPIC -DPIC -o .libs/resonance.o +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c search.cpp -o search.o >/dev/null 2>&1 In file included from pop_ana.h:31, from pop_ana.cpp:22: eng1_qm.h: In member function 'virtual bool eng1_qm::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': @@ -1999,20 +2042,12 @@ eng1_qm.h:129:135: warning: no return statement in function returning non-void [-Wreturn-type] 129 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c moldyn.cpp -o moldyn.o >/dev/null 2>&1 -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c seqbuild.cpp -o seqbuild.o >/dev/null 2>&1 -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_mm_prmfit.cpp -o eng1_mm_prmfit.o >/dev/null 2>&1 -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_mm_default.cpp -o eng1_mm_default.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c pop_ana.cpp -o pop_ana.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o resonance.lo resonance.cpp -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c resonance.cpp -fPIC -DPIC -o .libs/resonance.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c resonance.cpp -o resonance.o >/dev/null 2>&1 -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c tab_mm_default.cpp -o tab_mm_default.o >/dev/null 2>&1 -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c search.cpp -o search.o >/dev/null 2>&1 -libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c sasaeval.cpp -o sasaeval.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c model.cpp -o model.o >/dev/null 2>&1 +libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c sasaeval.cpp -o sasaeval.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_sf.cpp -o eng1_sf.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 5:1:0 -Wl,-z,relro -Wl,--as-needed -o libghemical.la -rpath /usr/lib/x86_64-linux-gnu atom.lo bond.lo constraint.lo model.lo engine.lo typerule.lo utility.lo chn_info.lo seqbuild.lo mfinder.lo eng1_qm.lo eng1_qm_mpqc.lo eng1_qm_mopac.lo eng1_mm.lo eng1_mm_tripos52.lo tab_mm_tripos52.lo eng1_mm_default.lo tab_mm_default.lo eng1_mm_prmfit.lo tab_mm_prmfit.lo eng1_sf.lo eng1_sf_ua.lo eng1_sf_cg.lo eng2_qm_mm.lo notice.lo conjgrad.lo intcrd.lo search.lo geomopt.lo moldyn.lo pop_ana.lo sasaeval.lo resonance.lo -llapack -lblas -lm -L/usr/lib -lmopac7 -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_cxx -lmpi +/bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 5:1:0 -Wl,-z,relro -Wl,--as-needed -o libghemical.la -rpath /usr/lib/x86_64-linux-gnu atom.lo bond.lo constraint.lo model.lo engine.lo typerule.lo utility.lo chn_info.lo seqbuild.lo mfinder.lo eng1_qm.lo eng1_qm_mpqc.lo eng1_qm_mopac.lo eng1_mm.lo eng1_mm_tripos52.lo tab_mm_tripos52.lo eng1_mm_default.lo tab_mm_default.lo eng1_mm_prmfit.lo tab_mm_prmfit.lo eng1_sf.lo eng1_sf_ua.lo eng1_sf_cg.lo eng2_qm_mm.lo notice.lo conjgrad.lo intcrd.lo search.lo geomopt.lo moldyn.lo pop_ana.lo sasaeval.lo resonance.lo -llapack -lblas -lm -L/usr/lib -lmopac7 -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_cxx -lmpi libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/10/crtbeginS.o .libs/atom.o .libs/bond.o .libs/constraint.o .libs/model.o .libs/engine.o .libs/typerule.o .libs/utility.o .libs/chn_info.o .libs/seqbuild.o .libs/mfinder.o .libs/eng1_qm.o .libs/eng1_qm_mpqc.o .libs/eng1_qm_mopac.o .libs/eng1_mm.o .libs/eng1_mm_tripos52.o .libs/tab_mm_tripos52.o .libs/eng1_mm_default.o .libs/tab_mm_default.o .libs/eng1_mm_prmfit.o .libs/tab_mm_prmfit.o .libs/eng1_sf.o .libs/eng1_sf_ua.o .libs/eng1_sf_cg.o .libs/eng2_qm_mm.o .libs/notice.o .libs/conjgrad.o .libs/intcrd.o .libs/search.o .libs/geomopt.o .libs/moldyn.o .libs/pop_ana.o .libs/sasaeval.o .libs/resonance.o -llapack -lblas -L/usr/lib -lmopac7 -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_cxx -lmpi -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/10/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/10/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/10/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/10/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-soname -Wl,libghemical.so.5 -o .libs/libghemical.so.5.0.1 libtool: link: (cd ".libs" && rm -f "libghemical.so.5" && ln -s "libghemical.so.5.0.1" "libghemical.so.5") libtool: link: (cd ".libs" && rm -f "libghemical.so" && ln -s "libghemical.so.5.0.1" "libghemical.so") @@ -2083,7 +2118,7 @@ make[2]: Leaving directory '/build/libghemical-3.0.0' make[1]: Leaving directory '/build/libghemical-3.0.0' dh_auto_test - make -j16 check VERBOSE=1 + make -j15 check VERBOSE=1 make[1]: Entering directory '/build/libghemical-3.0.0' Making check in src make[2]: Entering directory '/build/libghemical-3.0.0/src' @@ -2155,7 +2190,7 @@ make[2]: Entering directory '/build/libghemical-3.0.0/src' make[3]: Entering directory '/build/libghemical-3.0.0/src' /bin/mkdir -p '/build/libghemical-3.0.0/debian/tmp/usr/lib/x86_64-linux-gnu' - /bin/bash ../libtool --mode=install /usr/bin/install -c libghemical.la '/build/libghemical-3.0.0/debian/tmp/usr/lib/x86_64-linux-gnu' + /bin/sh ../libtool --mode=install /usr/bin/install -c libghemical.la '/build/libghemical-3.0.0/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libghemical.so.5.0.1 /build/libghemical-3.0.0/debian/tmp/usr/lib/x86_64-linux-gnu/libghemical.so.5.0.1 libtool: install: (cd /build/libghemical-3.0.0/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libghemical.so.5.0.1 libghemical.so.5 || { rm -f libghemical.so.5 && ln -s libghemical.so.5.0.1 libghemical.so.5; }; }) libtool: install: (cd /build/libghemical-3.0.0/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libghemical.so.5.0.1 libghemical.so || { rm -f libghemical.so && ln -s libghemical.so.5.0.1 libghemical.so; }; }) @@ -2248,7 +2283,7 @@ linguas="de fi mk pt_BR ru sq "; \ for lang in $linguas; do \ dir=/build/libghemical-3.0.0/debian/tmp/usr/share/locale/$lang/LC_MESSAGES; \ - /bin/bash /build/libghemical-3.0.0/install-sh -d $dir; \ + /bin/sh /build/libghemical-3.0.0/install-sh -d $dir; \ if test -r $lang.gmo; then \ /usr/bin/install -c -m 644 $lang.gmo $dir/libghemical.mo; \ echo "installing $lang.gmo as $dir/libghemical.mo"; \ @@ -2297,10 +2332,10 @@ dh_strip_nondeterminism Normalized debian/libghemical-data/usr/share/locale/sq/LC_MESSAGES/libghemical.mo Normalized debian/libghemical-data/usr/share/locale/ru/LC_MESSAGES/libghemical.mo + Normalized debian/libghemical-data/usr/share/locale/pt_BR/LC_MESSAGES/libghemical.mo Normalized debian/libghemical-data/usr/share/locale/mk/LC_MESSAGES/libghemical.mo - Normalized debian/libghemical-data/usr/share/locale/de/LC_MESSAGES/libghemical.mo Normalized debian/libghemical-data/usr/share/locale/fi/LC_MESSAGES/libghemical.mo - Normalized debian/libghemical-data/usr/share/locale/pt_BR/LC_MESSAGES/libghemical.mo + Normalized debian/libghemical-data/usr/share/locale/de/LC_MESSAGES/libghemical.mo dh_compress dh_fixperms dh_missing @@ -2323,25 +2358,25 @@ dh_strip dh_makeshlibs dh_shlibdeps -dpkg-shlibdeps: warning: symbol _ZN2sc15MolecularEnergy22get_cartesian_gradientEv used by debian/libghemical5v5/usr/lib/x86_64-linux-gnu/libghemical.so.5.0.1 found in none of the libraries -dpkg-shlibdeps: warning: symbol _ZN2sc8MaterialC1ERKNS_3RefINS_6KeyValEEE used by debian/libghemical5v5/usr/lib/x86_64-linux-gnu/libghemical.so.5.0.1 found in none of the libraries -dpkg-shlibdeps: warning: symbol _ZN2sc16MolecularFormulaC1ERKNS_3RefINS_8MoleculeEEE used by debian/libghemical5v5/usr/lib/x86_64-linux-gnu/libghemical.so.5.0.1 found in none of the libraries -dpkg-shlibdeps: warning: symbol _ZN2sc13ProcMemoryGrpC1ERKNS_3RefINS_6KeyValEEE used by debian/libghemical5v5/usr/lib/x86_64-linux-gnu/libghemical.so.5.0.1 found in none of the libraries -dpkg-shlibdeps: warning: symbol _ZTIN2sc12WavefunctionE used by debian/libghemical5v5/usr/lib/x86_64-linux-gnu/libghemical.so.5.0.1 found in none of the libraries -dpkg-shlibdeps: warning: symbol _ZN2sc7RefBase11dereferenceEPNS_8RefCountE used by debian/libghemical5v5/usr/lib/x86_64-linux-gnu/libghemical.so.5.0.1 found in none of the libraries -dpkg-shlibdeps: warning: symbol _ZN2sc19OneBodyWavefunction15orbital_densityERKNS_9SCVector3EiPd used by debian/libghemical5v5/usr/lib/x86_64-linux-gnu/libghemical.so.5.0.1 found in none of the libraries -dpkg-shlibdeps: warning: symbol _ZN2sc5OSSHFC1ERKNS_3RefINS_6KeyValEEE used by debian/libghemical5v5/usr/lib/x86_64-linux-gnu/libghemical.so.5.0.1 found in none of the libraries -dpkg-shlibdeps: warning: symbol _ZN2sc8RefCount9use_locksEb used by debian/libghemical5v5/usr/lib/x86_64-linux-gnu/libghemical.so.5.0.1 found in none of the libraries -dpkg-shlibdeps: warning: symbol _ZN2sc13ShmMessageGrpC1ERKNS_3RefINS_6KeyValEEE used by debian/libghemical5v5/usr/lib/x86_64-linux-gnu/libghemical.so.5.0.1 found in none of the libraries +dpkg-shlibdeps: warning: symbol _ZN2sc16MolecularFormulaD1Ev used by debian/libghemical5v5/usr/lib/x86_64-linux-gnu/libghemical.so.5.0.1 found in none of the libraries +dpkg-shlibdeps: warning: symbol _ZN2sc18SteepestDescentOptC1ERKNS_3RefINS_6KeyValEEE used by debian/libghemical5v5/usr/lib/x86_64-linux-gnu/libghemical.so.5.0.1 found in none of the libraries +dpkg-shlibdeps: warning: symbol _ZN2sc8SCFormIO20set_default_basenameEPKc used by debian/libghemical5v5/usr/lib/x86_64-linux-gnu/libghemical.so.5.0.1 found in none of the libraries +dpkg-shlibdeps: warning: symbol _ZNK2sc8RefCount10unlock_ptrEv used by debian/libghemical5v5/usr/lib/x86_64-linux-gnu/libghemical.so.5.0.1 found in none of the libraries +dpkg-shlibdeps: warning: symbol _ZN2sc9ThreadGrp21get_default_threadgrpEv used by debian/libghemical5v5/usr/lib/x86_64-linux-gnu/libghemical.so.5.0.1 found in none of the libraries +dpkg-shlibdeps: warning: symbol _ZN2sc22SCElementScalarProductC1Ev used by debian/libghemical5v5/usr/lib/x86_64-linux-gnu/libghemical.so.5.0.1 found in none of the libraries +dpkg-shlibdeps: warning: symbol _ZN2sc7RefBase9referenceEPNS_8RefCountE used by debian/libghemical5v5/usr/lib/x86_64-linux-gnu/libghemical.so.5.0.1 found in none of the libraries +dpkg-shlibdeps: warning: symbol _ZN2sc21TaylorMolecularEnergyC1ERKNS_3RefINS_6KeyValEEE used by debian/libghemical5v5/usr/lib/x86_64-linux-gnu/libghemical.so.5.0.1 found in none of the libraries +dpkg-shlibdeps: warning: symbol _ZN2sc10QNewtonOptC1ERKNS_3RefINS_6KeyValEEE used by debian/libghemical5v5/usr/lib/x86_64-linux-gnu/libghemical.so.5.0.1 found in none of the libraries +dpkg-shlibdeps: warning: symbol _ZN2sc6KeyVal6existsEPKc used by debian/libghemical5v5/usr/lib/x86_64-linux-gnu/libghemical.so.5.0.1 found in none of the libraries dpkg-shlibdeps: warning: 85 other similar warnings have been skipped (use -v to see them all) dh_installdeb dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'libghemical-data' in '../libghemical-data_3.0.0-4.3_all.deb'. -dpkg-deb: building package 'libghemical5v5' in '../libghemical5v5_3.0.0-4.3_amd64.deb'. dpkg-deb: building package 'libghemical-dev' in '../libghemical-dev_3.0.0-4.3_amd64.deb'. +dpkg-deb: building package 'libghemical5v5' in '../libghemical5v5_3.0.0-4.3_amd64.deb'. dpkg-deb: building package 'libghemical5v5-dbgsym' in '../libghemical5v5-dbgsym_3.0.0-4.3_amd64.deb'. +dpkg-deb: building package 'libghemical-data' in '../libghemical-data_3.0.0-4.3_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../libghemical_3.0.0-4.3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -2349,12 +2384,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3808339/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3808339/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1007125 and its subdirectories -I: Current time: Sat Aug 31 20:43:21 -12 2024 -I: pbuilder-time-stamp: 1725180201 +I: removing directory /srv/workspace/pbuilder/3808339 and its subdirectories +I: Current time: Mon Jul 31 16:22:20 +14 2023 +I: pbuilder-time-stamp: 1690770140