Diff of the two buildlogs: -- --- b1/build.log 2022-01-21 02:52:07.112015215 +0000 +++ b2/build.log 2022-01-21 03:14:04.067180839 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Feb 22 21:02:11 -12 2023 -I: pbuilder-time-stamp: 1677142931 +I: Current time: Fri Jan 21 16:52:10 +14 2022 +I: pbuilder-time-stamp: 1642733530 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -16,8 +16,8 @@ I: copying [./mmseqs2_12-113e3+ds-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.7qirap6Z/trustedkeys.kbx': General error -gpgv: Signature made Fri Feb 12 02:31:54 2021 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.0WopfreO/trustedkeys.kbx': General error +gpgv: Signature made Sat Feb 13 04:31:54 2021 +14 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./mmseqs2_12-113e3+ds-3.dsc @@ -33,135 +33,169 @@ dpkg-source: info: applying use_system_gzstream.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/576571/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/725185/tmp/hooks/D01_modify_environment starting +debug: Running on ionos11-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/725185/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/725185/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=16' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=15' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='809a05482e494d3f803c12a0f1f17480' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='576571' - PS1='# ' - PS2='> ' + INVOCATION_ID=0e96528bc2ad4dbd93ef2790347cb4b1 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=725185 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.rK7giYu67T/pbuilderrc_yNvs --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.rK7giYu67T/b1 --logfile b1/build.log mmseqs2_12-113e3+ds-3.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.rK7giYu67T/pbuilderrc_OjAZ --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.rK7giYu67T/b2 --logfile b2/build.log mmseqs2_12-113e3+ds-3.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 I: uname -a - Linux ionos5-amd64 5.15.0-0.bpo.2-amd64 #1 SMP Debian 5.15.5-2~bpo11+1 (2022-01-02) x86_64 GNU/Linux + Linux i-capture-the-hostname 5.10.0-11-amd64 #1 SMP Debian 5.10.92-1 (2022-01-18) x86_64 GNU/Linux I: ls -l /bin total 5476 - -rwxr-xr-x 1 root root 1234376 Aug 4 2021 bash - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat - -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp - -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod - -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown - -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp - -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash - -rwxr-xr-x 1 root root 113664 Sep 23 2020 date - -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd - -rwxr-xr-x 1 root root 93936 Sep 23 2020 df - -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir - -rwxr-xr-x 1 root root 84440 Jul 28 2021 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 39680 Sep 23 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 69032 Jul 28 2021 findmnt - -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount - -rwxr-xr-x 1 root root 203072 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe - -rwxr-xr-x 1 root root 98048 Mar 2 2021 gzip - -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln - -rwxr-xr-x 1 root root 56952 Feb 7 2020 login - -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls - -rwxr-xr-x 1 root root 149736 Jul 28 2021 lsblk - -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir - -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod - -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp - -rwxr-xr-x 1 root root 59632 Jul 28 2021 more - -rwsr-xr-x 1 root root 55528 Jul 28 2021 mount - -rwxr-xr-x 1 root root 18664 Jul 28 2021 mountpoint - -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd - lrwxrwxrwx 1 root root 4 Aug 4 2021 rbash -> bash - -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink - -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm - -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir - -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Feb 9 03:46 sh -> dash - -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep - -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty - -rwsr-xr-x 1 root root 71912 Jul 28 2021 su - -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync - -rwxr-xr-x 1 root root 531928 Feb 16 2021 tar - -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch - -rwxr-xr-x 1 root root 39680 Sep 23 2020 true - -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server - -rwsr-xr-x 1 root root 35040 Jul 28 2021 umount - -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress - -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir - -rwxr-xr-x 1 root root 63744 Jul 28 2021 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless - -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew -I: user script /srv/workspace/pbuilder/576571/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1234376 Aug 5 10:25 bash + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 18424 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 43936 Sep 24 2020 cat + -rwxr-xr-x 1 root root 72672 Sep 24 2020 chgrp + -rwxr-xr-x 1 root root 64448 Sep 24 2020 chmod + -rwxr-xr-x 1 root root 72672 Sep 24 2020 chown + -rwxr-xr-x 1 root root 151168 Sep 24 2020 cp + -rwxr-xr-x 1 root root 125560 Dec 11 2020 dash + -rwxr-xr-x 1 root root 113664 Sep 24 2020 date + -rwxr-xr-x 1 root root 80968 Sep 24 2020 dd + -rwxr-xr-x 1 root root 93936 Sep 24 2020 df + -rwxr-xr-x 1 root root 147176 Sep 24 2020 dir + -rwxr-xr-x 1 root root 84440 Jul 29 09:09 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 39712 Sep 24 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 39680 Sep 24 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 69032 Jul 29 09:09 findmnt + -rwsr-xr-x 1 root root 34896 Feb 27 2021 fusermount + -rwxr-xr-x 1 root root 203072 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 2021 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 2021 gzexe + -rwxr-xr-x 1 root root 98048 Mar 3 2021 gzip + -rwxr-xr-x 1 root root 22600 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 72840 Sep 24 2020 ln + -rwxr-xr-x 1 root root 56952 Feb 8 2020 login + -rwxr-xr-x 1 root root 147176 Sep 24 2020 ls + -rwxr-xr-x 1 root root 149736 Jul 29 09:09 lsblk + -rwxr-xr-x 1 root root 85184 Sep 24 2020 mkdir + -rwxr-xr-x 1 root root 76896 Sep 24 2020 mknod + -rwxr-xr-x 1 root root 48064 Sep 24 2020 mktemp + -rwxr-xr-x 1 root root 59632 Jul 29 09:09 more + -rwsr-xr-x 1 root root 55528 Jul 29 09:09 mount + -rwxr-xr-x 1 root root 18664 Jul 29 09:09 mountpoint + -rwxr-xr-x 1 root root 147080 Sep 24 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 2021 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 43872 Sep 24 2020 pwd + lrwxrwxrwx 1 root root 4 Aug 5 10:25 rbash -> bash + -rwxr-xr-x 1 root root 52032 Sep 24 2020 readlink + -rwxr-xr-x 1 root root 72704 Sep 24 2020 rm + -rwxr-xr-x 1 root root 52032 Sep 24 2020 rmdir + -rwxr-xr-x 1 root root 27472 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Jan 21 16:52 sh -> bash + lrwxrwxrwx 1 root root 4 Jan 7 23:24 sh.distrib -> dash + -rwxr-xr-x 1 root root 43808 Sep 24 2020 sleep + -rwxr-xr-x 1 root root 84928 Sep 24 2020 stty + -rwsr-xr-x 1 root root 71912 Jul 29 09:09 su + -rwxr-xr-x 1 root root 39744 Sep 24 2020 sync + -rwxr-xr-x 1 root root 531928 Feb 17 2021 tar + -rwxr-xr-x 1 root root 14456 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 101408 Sep 24 2020 touch + -rwxr-xr-x 1 root root 39680 Sep 24 2020 true + -rwxr-xr-x 1 root root 14328 Feb 27 2021 ulockmgr_server + -rwsr-xr-x 1 root root 35040 Jul 29 09:09 umount + -rwxr-xr-x 1 root root 39744 Sep 24 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 2021 uncompress + -rwxr-xr-x 1 root root 147176 Sep 24 2020 vdir + -rwxr-xr-x 1 root root 63744 Jul 29 09:09 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 2021 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 2021 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 2021 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 2021 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 2021 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 2021 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 2021 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 2021 zless + -rwxr-xr-x 1 root root 1842 Mar 3 2021 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 2021 znew +I: user script /srv/workspace/pbuilder/725185/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -265,7 +299,7 @@ Get: 54 http://deb.debian.org/debian bullseye/main amd64 libsimde-dev all 0.7.2-4 [259 kB] Get: 55 http://deb.debian.org/debian bullseye/main amd64 libzstd-dev amd64 1.4.8+dfsg-2.1 [382 kB] Get: 56 http://deb.debian.org/debian bullseye/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2 [190 kB] -Fetched 29.3 MB in 0s (83.6 MB/s) +Fetched 29.3 MB in 1s (20.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19655 files and directories currently installed.) @@ -505,7 +539,8 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/mmseqs2-12-113e3+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../mmseqs2_12-113e3+ds-3_source.changes +hostname: Name or service not known +I: Running cd /build/mmseqs2-12-113e3+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../mmseqs2_12-113e3+ds-3_source.changes dpkg-buildpackage: info: source package mmseqs2 dpkg-buildpackage: info: source version 12-113e3+ds-3 dpkg-buildpackage: info: source distribution unstable @@ -834,7 +869,7 @@ make[1]: Entering directory '/build/mmseqs2-12-113e3+ds' mkdir -p /build/mmseqs2-12-113e3+ds/debian/mmseqs2/usr/bin dh_auto_build --builddirectory build_avx2 && dh_auto_build --builddirectory build_avx && dh_auto_build --builddirectory build_sse4.1 && dh_auto_build --builddirectory build_ssse3 && dh_auto_build --builddirectory build_sse3 && true - cd build_avx2 && make -j16 "INSTALL=install --strip-program=true" VERBOSE=1 + cd build_avx2 && make -j15 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/mmseqs2-12-113e3+ds/build_avx2' /usr/bin/cmake -S/build/mmseqs2-12-113e3+ds -B/build/mmseqs2-12-113e3+ds/build_avx2 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/mmseqs2-12-113e3+ds/build_avx2/CMakeFiles /build/mmseqs2-12-113e3+ds/build_avx2//CMakeFiles/progress.marks @@ -843,366 +878,364 @@ make -f lib/microtar/CMakeFiles/microtar.dir/build.make lib/microtar/CMakeFiles/microtar.dir/depend make -f lib/cacode/CMakeFiles/cacode.dir/build.make lib/cacode/CMakeFiles/cacode.dir/depend make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/depend +make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/depend make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_avx2' cd /build/mmseqs2-12-113e3+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/microtar /build/mmseqs2-12-113e3+ds/build_avx2 /build/mmseqs2-12-113e3+ds/build_avx2/lib/microtar /build/mmseqs2-12-113e3+ds/build_avx2/lib/microtar/CMakeFiles/microtar.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_avx2' cd /build/mmseqs2-12-113e3+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/cacode /build/mmseqs2-12-113e3+ds/build_avx2 /build/mmseqs2-12-113e3+ds/build_avx2/lib/cacode /build/mmseqs2-12-113e3+ds/build_avx2/lib/cacode/CMakeFiles/cacode.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_avx2' +cd /build/mmseqs2-12-113e3+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/ksw2 /build/mmseqs2-12-113e3+ds/build_avx2 /build/mmseqs2-12-113e3+ds/build_avx2/lib/ksw2 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Scanning dependencies of target tinyexpr -[ 1%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/ludcmp.cpp.o -[ 1%] Building CXX object lib/ksw2/CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o +Scanning dependencies of target version +Scanning dependencies of target alp make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_avx2' -[ 2%] Building C object lib/microtar/CMakeFiles/microtar.dir/microtar.c.o +make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_avx2' +make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_avx2' +make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_avx2' +make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/build +[ 1%] Building C object lib/microtar/CMakeFiles/microtar.dir/microtar.c.o +[ 1%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/lubksb.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/microtar && /usr/bin/cc -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -g 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/usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/lambda_calculator.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/lambda_calculator.cpp +make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_avx2' make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/build +[ 2%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/ludcmp.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/ludcmp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/ludcmp.cpp make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_avx2' -cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/ksw2 && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar 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CMakeFiles/alp.dir/njn_dynprogprob.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogprob.cpp [ 4%] Generating ../generated/VTML40.out.h -[ 4%] Generating ../generated/PAM30.out.h -[ 4%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_random.cpp.o -cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true nucleotide.out -cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time 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-I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogprobproto.cpp +cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd 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-I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/version.dir/Version.cpp.o -c /build/mmseqs2-12-113e3+ds/src/version/Version.cpp +cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blosum62.out +cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated +cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl VTML80.out > /build/mmseqs2-12-113e3+ds/build_avx2/generated/VTML80.out.h [ 6%] Building C object lib/tinyexpr/CMakeFiles/tinyexpr.dir/tinyexpr.c.o -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib -cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogprob.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogprob.cpp cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/tinyexpr && /usr/bin/cc -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -ansi -Wall -Wshadow -fPIC -O3 -o CMakeFiles/tinyexpr.dir/tinyexpr.c.o -c /build/mmseqs2-12-113e3+ds/lib/tinyexpr/tinyexpr.c cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated -cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated -cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated -cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated -cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated -cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl VTML80.out > /build/mmseqs2-12-113e3+ds/build_avx2/generated/VTML80.out.h -cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl nucleotide.out > /build/mmseqs2-12-113e3+ds/build_avx2/generated/nucleotide.out.h cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl VTML40.out > /build/mmseqs2-12-113e3+ds/build_avx2/generated/VTML40.out.h +cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/VTML80.out.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/VTML80.out.h.tmp +cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl nucleotide.out > /build/mmseqs2-12-113e3+ds/build_avx2/generated/nucleotide.out.h cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blosum62.out > /build/mmseqs2-12-113e3+ds/build_avx2/generated/blosum62.out.h -cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl PAM30.out > /build/mmseqs2-12-113e3+ds/build_avx2/generated/PAM30.out.h [ 7%] Linking CXX static library libversion.a +cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/VTML40.out.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/VTML40.out.h.tmp cd /build/mmseqs2-12-113e3+ds/build_avx2/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/mmseqs2-12-113e3+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h -cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/VTML80.out.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/VTML80.out.h.tmp +cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/VTML80.out.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/VTML80.out.h +cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/VTML40.out.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/VTML40.out.h cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/nucleotide.out.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/nucleotide.out.h.tmp -cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/VTML40.out.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/VTML40.out.h.tmp -[ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogprobproto.cpp cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/blosum62.out.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/blosum62.out.h.tmp cd /build/mmseqs2-12-113e3+ds/build_avx2/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 -cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/PAM30.out.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/PAM30.out.h.tmp -cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/VTML80.out.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/VTML80.out.h cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/nucleotide.out.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/nucleotide.out.h -cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/VTML40.out.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/VTML40.out.h -[ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstat.cpp cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/blosum62.out.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/blosum62.out.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h.tmp -cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/PAM30.out.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/PAM30.out.h /usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o +[ 7%] Generating ../generated/PAM30.out.h +cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true PAM30.out /usr/bin/ranlib libversion.a -[ 8%] Linking C static library libmicrotar.a -cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake +[ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstat.cpp +cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_avx2' -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h -[ 8%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h -cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib -[ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -[ 9%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h +cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl PAM30.out > /build/mmseqs2-12-113e3+ds/build_avx2/generated/PAM30.out.h +[ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o +[ 9%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstatmatrix.cpp +[ 9%] Built target version +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib [ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o +cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/PAM30.out.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/PAM30.out.h.tmp cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_sim.cpp -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib -[ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o -[ 10%] Built target version cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated +[ 9%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h +[ 9%] Linking C static library libmicrotar.a +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib +cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake +[ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o +cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/PAM30.out.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/PAM30.out.h cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_pvalues.cpp -/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/mmseqs2-12-113e3+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/mmseqs2-12-113e3+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h [ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -[ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogproblim.cpp -/usr/bin/ranlib libmicrotar.a -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/mmseqs2-12-113e3+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 +[ 10%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h +[ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alignment_evaluer.cpp +cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h.tmp +/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o +cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/mmseqs2-12-113e3+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h +/usr/bin/ranlib libmicrotar.a +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_avx2' +cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h.tmp +[ 10%] Built target microtar [ 11%] Generating ../generated/Library255_may17.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true Library255_may17.lib [ 12%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_regression.cpp -[ 12%] Built target microtar -cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl Library255_may17.lib > /build/mmseqs2-12-113e3+ds/build_avx2/generated/Library255_may17.lib.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp -[ 12%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp.cpp cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h [ 12%] Generating ../generated/libPolished_8.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true libPolished_8.lib +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl Library255_may17.lib > /build/mmseqs2-12-113e3+ds/build_avx2/generated/Library255_may17.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl libPolished_8.lib > /build/mmseqs2-12-113e3+ds/build_avx2/generated/libPolished_8.lib.h +[ 12%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp.cpp [ 13%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstatutil.cpp +cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/libPolished_8.lib.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/libPolished_8.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/Library255_may17.lib.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/Library255_may17.lib.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl libPolished_8.lib > /build/mmseqs2-12-113e3+ds/build_avx2/generated/libPolished_8.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/libPolished_8.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/libPolished_8.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/Library255_may17.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/Library255_may17.lib.h [ 14%] Generating ../generated/cs219.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true cs219.lib -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/libPolished_8.lib.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/libPolished_8.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/libPolished_8.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/libPolished_8.lib.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl cs219.lib > /build/mmseqs2-12-113e3+ds/build_avx2/generated/cs219.lib.h [ 14%] Generating ../generated/krona_prelude.html.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true krona_prelude.html +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl cs219.lib > /build/mmseqs2-12-113e3+ds/build_avx2/generated/cs219.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl krona_prelude.html > /build/mmseqs2-12-113e3+ds/build_avx2/generated/krona_prelude.html.h -[ 15%] Generating ../generated/result_viz_prelude.html.zst.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true result_viz_prelude.html.zst cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/cs219.lib.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/cs219.lib.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated +[ 15%] Linking C static library libtinyexpr.a cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/cs219.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/cs219.lib.h +cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake +cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 +[ 16%] Generating ../generated/result_viz_prelude.html.zst.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true result_viz_prelude.html.zst +/usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o +cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated +[ 16%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_basic.cpp cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/mmseqs2-12-113e3+ds/build_avx2/generated/result_viz_prelude.html.zst.h -[ 15%] Generating ../generated/easysearch.sh.h +/usr/bin/ranlib libtinyexpr.a +make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_avx2' +[ 16%] Built target tinyexpr +cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/krona_prelude.html.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/krona_prelude.html.h.tmp +[ 17%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_data.cpp +cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/result_viz_prelude.html.zst.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/result_viz_prelude.html.zst.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/krona_prelude.html.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/krona_prelude.html.h +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/result_viz_prelude.html.zst.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/result_viz_prelude.html.zst.h +[ 17%] Generating ../generated/easysearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easysearch.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easysearch.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/easysearch.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/easysearch.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/easysearch.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/easysearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/easysearch.sh.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/result_viz_prelude.html.zst.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/result_viz_prelude.html.zst.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/result_viz_prelude.html.zst.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/result_viz_prelude.html.zst.h -[ 15%] Generating ../generated/easycluster.sh.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/krona_prelude.html.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/krona_prelude.html.h.tmp +[ 17%] Generating ../generated/easycluster.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easycluster.sh -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/krona_prelude.html.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/krona_prelude.html.h +make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_avx2' cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated -[ 16%] Generating ../generated/easytaxonomy.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easytaxonomy.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/easysearch.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/easysearch.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easycluster.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/easycluster.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated -[ 16%] Generating ../generated/easyrbh.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easyrbh.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/easysearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/easysearch.sh.h +[ 17%] Built target cacode cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/easycluster.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/easycluster.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easytaxonomy.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/easytaxonomy.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated +[ 17%] Generating ../generated/easyrbh.sh.h +[ 18%] Generating ../generated/easytaxonomy.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easyrbh.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easytaxonomy.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/easycluster.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/easycluster.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easyrbh.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/easyrbh.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/easytaxonomy.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/easytaxonomy.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/easytaxonomy.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/easytaxonomy.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easytaxonomy.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/easytaxonomy.sh.h +[ 18%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_ioutil.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/easyrbh.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/easyrbh.sh.h.tmp -[ 17%] Generating ../generated/blastp.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastp.sh -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_avx2' +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/easytaxonomy.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/easytaxonomy.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/easyrbh.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/easyrbh.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastp.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastp.sh.h -[ 17%] Generating ../generated/blastpgp.sh.h +[ 19%] Generating ../generated/blastp.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastp.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/easytaxonomy.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/easytaxonomy.sh.h +[ 19%] Generating ../generated/blastpgp.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastpgp.sh -[ 17%] Built target cacode -[ 18%] Generating ../generated/map.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true map.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastp.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastp.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated -[ 18%] Generating ../generated/rbh.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true rbh.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastp.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastp.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastp.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastp.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastpgp.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastpgp.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastp.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastp.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastpgp.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastpgp.sh.h.tmp +[ 20%] Generating ../generated/map.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true map.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastp.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastp.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastpgp.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastpgp.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl map.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/map.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/map.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/map.sh.h.tmp +[ 20%] Generating ../generated/rbh.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true rbh.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/map.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/map.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated +[ 21%] Generating ../generated/linclust.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true linclust.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl rbh.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/rbh.sh.h -[ 18%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/map.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/map.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_basic.cpp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastpgp.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastpgp.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl linclust.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/linclust.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/rbh.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/rbh.sh.h.tmp -[ 19%] Generating ../generated/linclust.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true linclust.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/map.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/map.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastpgp.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastpgp.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/rbh.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/rbh.sh.h -[ 19%] Generating ../generated/clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/linclust.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/linclust.sh.h.tmp +[ 21%] Generating ../generated/clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true clustering.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl linclust.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/linclust.sh.h -[ 20%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o +[ 21%] Generating ../generated/cascaded_clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/linclust.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/linclust.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true cascaded_clustering.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated -cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_data.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl clustering.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/linclust.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/linclust.sh.h.tmp -[ 20%] Generating ../generated/cascaded_clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true cascaded_clustering.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/cascaded_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/clustering.sh.h.tmp -[ 21%] Linking C static library libtinyexpr.a -cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/linclust.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/linclust.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/cascaded_clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/cascaded_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/cascaded_clustering.sh.h.tmp -[ 21%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_ioutil.cpp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/cascaded_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/cascaded_clustering.sh.h -/usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o [ 22%] Generating ../generated/update_clustering.sh.h -[ 22%] Generating ../generated/searchtargetprofile.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true searchtargetprofile.sh -/usr/bin/ranlib libtinyexpr.a +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/cascaded_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/cascaded_clustering.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true update_clustering.sh -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_avx2' -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/cascaded_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/cascaded_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/searchtargetprofile.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl update_clustering.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/update_clustering.sh.h -[ 22%] Built target tinyexpr +[ 22%] Generating ../generated/searchtargetprofile.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true searchtargetprofile.sh [ 23%] Generating ../generated/createindex.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true createindex.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/searchtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/searchtargetprofile.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/update_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/update_clustering.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true createindex.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated [ 23%] Generating ../generated/createtaxdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true createtaxdb.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/searchtargetprofile.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/searchtargetprofile.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/update_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/update_clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl createindex.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/createindex.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/searchtargetprofile.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl createindex.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/createindex.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl createtaxdb.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/createtaxdb.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/searchtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/searchtargetprofile.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/createindex.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/createindex.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/createtaxdb.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/createtaxdb.sh.h.tmp [ 24%] Generating ../generated/translated_search.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl createtaxdb.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/createtaxdb.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/searchtargetprofile.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/searchtargetprofile.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true translated_search.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/createindex.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/createindex.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/createtaxdb.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/createtaxdb.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl translated_search.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/translated_search.sh.h [ 24%] Generating ../generated/taxonomy.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true taxonomy.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/createtaxdb.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/createtaxdb.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/createtaxdb.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/createtaxdb.sh.h [ 25%] Generating ../generated/taxpercontig.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl translated_search.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/translated_search.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl taxonomy.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/taxonomy.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true taxpercontig.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/translated_search.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/translated_search.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/taxonomy.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/taxonomy.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated [ 25%] Generating ../generated/multihitdb.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/translated_search.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/translated_search.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/taxonomy.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/taxonomy.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true multihitdb.sh -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_avx2' +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/translated_search.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/translated_search.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated +[ 25%] Generating ../generated/multihitsearch.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true multihitsearch.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl taxonomy.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/taxonomy.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/translated_search.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/translated_search.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl taxpercontig.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/taxpercontig.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/taxonomy.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/taxonomy.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl multihitdb.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/multihitdb.sh.h -[ 25%] Built target ksw2 cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/taxpercontig.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/taxpercontig.sh.h.tmp -[ 25%] Generating ../generated/multihitsearch.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/multihitdb.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/multihitdb.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true multihitsearch.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/taxpercontig.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/taxpercontig.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl multihitsearch.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/multihitsearch.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/taxonomy.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/taxonomy.sh.h [ 26%] Generating ../generated/enrich.sh.h -[ 26%] Generating ../generated/blastn.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true enrich.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastn.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/multihitdb.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/multihitdb.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/multihitdb.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/multihitdb.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/taxpercontig.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/taxpercontig.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/multihitsearch.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/multihitsearch.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl multihitsearch.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/multihitsearch.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/multihitdb.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/multihitdb.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/multihitsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/multihitsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl enrich.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/enrich.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastn.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastn.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/multihitsearch.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/multihitsearch.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastn.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastn.sh.h.tmp -[ 27%] Generating ../generated/searchslicedtargetprofile.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/enrich.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/enrich.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/multihitsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/multihitsearch.sh.h -[ 27%] Generating ../generated/linsearch.sh.h -[ 28%] Generating ../generated/databases.sh.h +[ 26%] Generating ../generated/blastn.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastn.sh +[ 26%] Generating ../generated/linsearch.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/enrich.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/enrich.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true linsearch.sh +[ 27%] Generating ../generated/searchslicedtargetprofile.sh.h +[ 28%] Generating ../generated/databases.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true databases.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastn.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastn.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/enrich.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/enrich.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/searchslicedtargetprofile.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastn.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastn.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl linsearch.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/linsearch.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/searchslicedtargetprofile.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl databases.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/databases.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastn.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastn.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/linsearch.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/linsearch.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/searchslicedtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/searchslicedtargetprofile.sh.h.tmp -[ 28%] Generating ../generated/nucleotide_clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/databases.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/databases.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true nucleotide_clustering.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastn.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/blastn.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/linsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/linsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/searchslicedtargetprofile.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/searchslicedtargetprofile.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx2/generated/databases.sh.h > /build/mmseqs2-12-113e3+ds/build_avx2/generated/databases.sh.h.tmp +[ 28%] Generating ../generated/nucleotide_clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true nucleotide_clustering.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx2/generated/databases.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx2/generated/databases.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx2/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/mmseqs2-12-113e3+ds/build_avx2/generated/nucleotide_clustering.sh.h @@ -1211,6 +1244,8 @@ make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_avx2' [ 28%] Built target generated make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_avx2' +[ 28%] Built target ksw2 +make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_avx2' [ 28%] Built target alp make -f src/CMakeFiles/mmseqs-framework.dir/build.make src/CMakeFiles/mmseqs-framework.dir/depend make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_avx2' @@ -1221,38 +1256,38 @@ make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_avx2' make -f src/CMakeFiles/mmseqs-framework.dir/build.make src/CMakeFiles/mmseqs-framework.dir/build make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_avx2' -[ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o -[ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o -[ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o -[ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o -[ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o +[ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.cpp +[ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o +[ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/CompressedA3M.cpp -[ 31%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/Main.cpp +[ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment 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-Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/StripedSmithWaterman.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/StripedSmithWaterman.cpp +[ 32%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/BandedNucleotideAligner.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o 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-fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/Main.cpp [ 33%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/rescorediagonal.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o 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-I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/Main.cpp [ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode 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/usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/AlignmentSymmetry.cpp +[ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o [ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/Clustering.cpp cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/ClusteringAlgorithms.cpp -[ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Application.cpp [ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/A3MReader.cpp +[ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Application.cpp [ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/BaseMatrix.cpp [ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o @@ -1265,10 +1300,10 @@ cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/DBReader.cpp [ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/DBWriter.cpp +[ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Debug.cpp [ 39%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/ExpressionParser.cpp -[ 39%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Debug.cpp [ 39%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/FileUtil.cpp [ 40%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/HeaderSummarizer.cpp.o @@ -1383,13 +1418,13 @@ cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertkb.cpp [ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertmsa.cpp +[ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertprofiledb.cpp [ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createdb.cpp -[ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/convertprofiledb.cpp -[ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/dbtype.cpp [ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o +[ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/dbtype.cpp cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/indexdb.cpp [ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/offsetalignment.cpp @@ -1467,9 +1502,9 @@ cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/reverseseq.cpp [ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/rmdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/rmdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/rmdb.cpp -[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o [ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractframes.cpp +[ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/sortresult.cpp [ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx2/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/splitdb.cpp @@ -1565,379 +1600,379 @@ make[3]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_avx2' /usr/bin/cmake -E cmake_progress_start /build/mmseqs2-12-113e3+ds/build_avx2/CMakeFiles 0 make[2]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_avx2' - cd build_avx && make -j16 "INSTALL=install --strip-program=true" VERBOSE=1 + cd build_avx && make -j15 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/mmseqs2-12-113e3+ds/build_avx' /usr/bin/cmake -S/build/mmseqs2-12-113e3+ds -B/build/mmseqs2-12-113e3+ds/build_avx --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/mmseqs2-12-113e3+ds/build_avx/CMakeFiles /build/mmseqs2-12-113e3+ds/build_avx//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/mmseqs2-12-113e3+ds/build_avx' make -f lib/microtar/CMakeFiles/microtar.dir/build.make lib/microtar/CMakeFiles/microtar.dir/depend -make -f lib/cacode/CMakeFiles/cacode.dir/build.make lib/cacode/CMakeFiles/cacode.dir/depend make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_avx' cd /build/mmseqs2-12-113e3+ds/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/microtar /build/mmseqs2-12-113e3+ds/build_avx /build/mmseqs2-12-113e3+ds/build_avx/lib/microtar /build/mmseqs2-12-113e3+ds/build_avx/lib/microtar/CMakeFiles/microtar.dir/DependInfo.cmake --color= -make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/depend +make -f lib/cacode/CMakeFiles/cacode.dir/build.make lib/cacode/CMakeFiles/cacode.dir/depend make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_avx' cd /build/mmseqs2-12-113e3+ds/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/cacode 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lib/tinyexpr/CMakeFiles/tinyexpr.dir/tinyexpr.c.o +cd /build/mmseqs2-12-113e3+ds/build_avx/lib/tinyexpr && /usr/bin/cc -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -ansi -Wall -Wshadow -fPIC -O3 -o CMakeFiles/tinyexpr.dir/tinyexpr.c.o -c /build/mmseqs2-12-113e3+ds/lib/tinyexpr/tinyexpr.c +cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated +[ 6%] Linking CXX static library libversion.a +cd /build/mmseqs2-12-113e3+ds/build_avx/src/version && /usr/bin/cmake -P 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blosum62.out > /build/mmseqs2-12-113e3+ds/build_avx/generated/blosum62.out.h +cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl PAM30.out > /build/mmseqs2-12-113e3+ds/build_avx/generated/PAM30.out.h +/usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o +/usr/bin/ranlib libversion.a cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/VTML80.out.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/VTML80.out.h.tmp +cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/VTML40.out.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/VTML40.out.h.tmp cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/VTML80.out.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/VTML80.out.h +make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_avx' cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/nucleotide.out.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/nucleotide.out.h.tmp -cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/VTML40.out.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/VTML40.out.h.tmp -cd /build/mmseqs2-12-113e3+ds/build_avx/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 -[ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o -cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/nucleotide.out.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/nucleotide.out.h -cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_sim.cpp +cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/PAM30.out.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/PAM30.out.h.tmp +cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/blosum62.out.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/blosum62.out.h.tmp +[ 6%] Built target version cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/VTML40.out.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/VTML40.out.h -[ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_pvalues.cpp -[ 9%] Generating ../generated/blosum62.out.h -/usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o -cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blosum62.out -/usr/bin/ranlib libversion.a -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_avx' -cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated -[ 9%] Generating ../generated/PAM30.out.h -cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true PAM30.out -cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blosum62.out > /build/mmseqs2-12-113e3+ds/build_avx/generated/blosum62.out.h -[ 9%] Built target version -cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated -[ 10%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h +cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/nucleotide.out.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/nucleotide.out.h +cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/PAM30.out.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/PAM30.out.h +[ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o +cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/blosum62.out.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/blosum62.out.h +cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogprobproto.cpp +[ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o +[ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o +[ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstat.cpp +[ 9%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h +cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstatmatrix.cpp cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib -cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/blosum62.out.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/blosum62.out.h.tmp +cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_sim.cpp +[ 10%] Generating ../generated/Library255_may17.lib.h +[ 10%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true Library255_may17.lib +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib +[ 10%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h [ 10%] Linking C static library libmicrotar.a +[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib cd /build/mmseqs2-12-113e3+ds/build_avx/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake -[ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogproblim.cpp -cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl PAM30.out > /build/mmseqs2-12-113e3+ds/build_avx/generated/PAM30.out.h cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated -cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/blosum62.out.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/blosum62.out.h -[ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alignment_evaluer.cpp +cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_pvalues.cpp +cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated +cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated cd /build/mmseqs2-12-113e3+ds/build_avx/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 -cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/PAM30.out.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/PAM30.out.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/mmseqs2-12-113e3+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h -cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/PAM30.out.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/PAM30.out.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl Library255_may17.lib > /build/mmseqs2-12-113e3+ds/build_avx/generated/Library255_may17.lib.h /usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o -[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -[ 10%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/mmseqs2-12-113e3+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h /usr/bin/ranlib libmicrotar.a -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_avx' -cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_regression.cpp -cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/mmseqs2-12-113e3+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h.tmp -[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h +make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_avx' +cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h.tmp [ 11%] Built target microtar -cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp.cpp cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h.tmp +[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogproblim.cpp +cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/Library255_may17.lib.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/Library255_may17.lib.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h -[ 11%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib -[ 12%] Generating ../generated/Library255_may17.lib.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true Library255_may17.lib -[ 13%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated -cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstatutil.cpp -cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/mmseqs2-12-113e3+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h -[ 13%] Generating ../generated/libPolished_8.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/Library255_may17.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/Library255_may17.lib.h +[ 11%] Generating ../generated/libPolished_8.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true libPolished_8.lib -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl Library255_may17.lib > /build/mmseqs2-12-113e3+ds/build_avx/generated/Library255_may17.lib.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h.tmp +[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alignment_evaluer.cpp +[ 12%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o +[ 13%] Generating ../generated/cs219.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true cs219.lib +cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_regression.cpp +cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated +[ 13%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp.cpp cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl libPolished_8.lib > /build/mmseqs2-12-113e3+ds/build_avx/generated/libPolished_8.lib.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/Library255_may17.lib.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/Library255_may17.lib.h.tmp -[ 14%] Generating ../generated/cs219.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl cs219.lib > /build/mmseqs2-12-113e3+ds/build_avx/generated/cs219.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/libPolished_8.lib.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/libPolished_8.lib.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true cs219.lib -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/Library255_may17.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/Library255_may17.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/libPolished_8.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/libPolished_8.lib.h -cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl cs219.lib > /build/mmseqs2-12-113e3+ds/build_avx/generated/cs219.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/cs219.lib.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/cs219.lib.h.tmp +[ 14%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstatutil.cpp [ 14%] Generating ../generated/krona_prelude.html.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true krona_prelude.html -[ 15%] Generating ../generated/result_viz_prelude.html.zst.h +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/cs219.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/cs219.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true result_viz_prelude.html.zst cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl krona_prelude.html > /build/mmseqs2-12-113e3+ds/build_avx/generated/krona_prelude.html.h +[ 15%] Generating ../generated/result_viz_prelude.html.zst.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true result_viz_prelude.html.zst cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/cs219.lib.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/cs219.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/mmseqs2-12-113e3+ds/build_avx/generated/result_viz_prelude.html.zst.h -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/cs219.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/cs219.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/result_viz_prelude.html.zst.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/result_viz_prelude.html.zst.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/krona_prelude.html.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/krona_prelude.html.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/result_viz_prelude.html.zst.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/result_viz_prelude.html.zst.h +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/krona_prelude.html.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/krona_prelude.html.h +make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_avx' [ 15%] Generating ../generated/easysearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easysearch.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/result_viz_prelude.html.zst.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/result_viz_prelude.html.zst.h.tmp +[ 15%] Built target cacode cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easysearch.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/easysearch.sh.h -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/result_viz_prelude.html.zst.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/result_viz_prelude.html.zst.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/easysearch.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/easysearch.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/easysearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/easysearch.sh.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/krona_prelude.html.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/krona_prelude.html.h.tmp [ 15%] Generating ../generated/easycluster.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easycluster.sh -[ 16%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/krona_prelude.html.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/krona_prelude.html.h -[ 16%] Generating ../generated/easytaxonomy.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated +[ 15%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_basic.cpp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easytaxonomy.sh -[ 17%] Linking C static library libtinyexpr.a cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easycluster.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/easycluster.sh.h -cd /build/mmseqs2-12-113e3+ds/build_avx/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated -[ 18%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_data.cpp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/easysearch.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/easysearch.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/easysearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/easysearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/easycluster.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/easycluster.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easytaxonomy.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/easytaxonomy.sh.h -cd /build/mmseqs2-12-113e3+ds/build_avx/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/easycluster.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/easycluster.sh.h -/usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o -/usr/bin/ranlib libtinyexpr.a -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_avx' +[ 16%] Generating ../generated/easytaxonomy.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easytaxonomy.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easytaxonomy.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/easytaxonomy.sh.h +[ 16%] Generating ../generated/easyrbh.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easyrbh.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/easytaxonomy.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/easytaxonomy.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easyrbh.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/easyrbh.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/easytaxonomy.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/easytaxonomy.sh.h -[ 18%] Built target tinyexpr -[ 18%] Generating ../generated/easyrbh.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easyrbh.sh +[ 17%] Linking C static library libtinyexpr.a +cd /build/mmseqs2-12-113e3+ds/build_avx/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/easyrbh.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/easyrbh.sh.h.tmp +[ 18%] Generating ../generated/blastp.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastp.sh +cd /build/mmseqs2-12-113e3+ds/build_avx/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/easyrbh.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/easyrbh.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated -[ 19%] Generating ../generated/blastp.sh.h -[ 19%] Generating ../generated/blastpgp.sh.h +/usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastp.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/blastp.sh.h +/usr/bin/ranlib libtinyexpr.a +[ 18%] Generating ../generated/blastpgp.sh.h make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_avx' -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastp.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastpgp.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easyrbh.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/easyrbh.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/blastp.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/blastp.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/easyrbh.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/easyrbh.sh.h.tmp -[ 19%] Built target cacode -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastp.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/blastp.sh.h -[ 19%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_ioutil.cpp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/blastp.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/blastp.sh.h +[ 18%] Built target tinyexpr cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastpgp.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/blastpgp.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/easyrbh.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/easyrbh.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/blastp.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/blastp.sh.h.tmp +[ 19%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_data.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/blastpgp.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/blastpgp.sh.h.tmp [ 20%] Generating ../generated/map.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true map.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/blastp.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/blastp.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/blastpgp.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/blastpgp.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl map.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/map.sh.h -[ 20%] Generating ../generated/clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/map.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/map.sh.h.tmp +[ 20%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_ioutil.cpp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/map.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/map.sh.h [ 20%] Generating ../generated/rbh.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true rbh.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true clustering.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/map.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/map.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated [ 21%] Generating ../generated/linclust.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true linclust.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/map.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/map.sh.h -[ 21%] Generating ../generated/cascaded_clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true cascaded_clustering.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl rbh.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/rbh.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl clustering.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl linclust.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/linclust.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/clustering.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/rbh.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/rbh.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/cascaded_clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/linclust.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/linclust.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/rbh.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/rbh.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/linclust.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/linclust.sh.h -[ 22%] Generating ../generated/update_clustering.sh.h +[ 21%] Generating ../generated/clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true clustering.sh +[ 21%] Generating ../generated/cascaded_clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true cascaded_clustering.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl clustering.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/cascaded_clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/clustering.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/cascaded_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/cascaded_clustering.sh.h.tmp +[ 22%] Generating ../generated/update_clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true update_clustering.sh -[ 22%] Generating ../generated/searchtargetprofile.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true searchtargetprofile.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/cascaded_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/cascaded_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl update_clustering.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/update_clustering.sh.h +[ 22%] Generating ../generated/searchtargetprofile.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true searchtargetprofile.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/update_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/update_clustering.sh.h.tmp [ 23%] Generating ../generated/createindex.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true createindex.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl update_clustering.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/update_clustering.sh.h [ 23%] Generating ../generated/createtaxdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true createtaxdb.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/searchtargetprofile.sh.h -[ 24%] Generating ../generated/translated_search.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true translated_search.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/update_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/update_clustering.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/update_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/update_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/searchtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/searchtargetprofile.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/searchtargetprofile.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl createindex.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/createindex.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/update_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/update_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl createtaxdb.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/createtaxdb.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/searchtargetprofile.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/searchtargetprofile.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl translated_search.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/translated_search.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/searchtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/searchtargetprofile.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/createindex.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/createindex.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/createtaxdb.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/createtaxdb.sh.h.tmp +[ 24%] Generating ../generated/translated_search.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true translated_search.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/searchtargetprofile.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/searchtargetprofile.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/createindex.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/createindex.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/createtaxdb.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/createtaxdb.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl translated_search.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/translated_search.sh.h [ 24%] Generating ../generated/taxonomy.sh.h -[ 25%] Generating ../generated/taxpercontig.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true taxpercontig.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/translated_search.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/translated_search.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true taxonomy.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/createtaxdb.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/createtaxdb.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/translated_search.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/translated_search.sh.h.tmp +[ 25%] Generating ../generated/taxpercontig.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true taxpercontig.sh [ 25%] Generating ../generated/multihitdb.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true multihitdb.sh +[ 25%] Generating ../generated/multihitsearch.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true multihitsearch.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/translated_search.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/translated_search.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl taxonomy.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/taxonomy.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl taxpercontig.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/taxpercontig.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/taxpercontig.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/taxpercontig.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl taxpercontig.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/taxpercontig.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl multihitdb.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/multihitdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/taxonomy.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/taxonomy.sh.h.tmp -[ 25%] Generating ../generated/multihitsearch.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true multihitsearch.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/taxpercontig.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/taxpercontig.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/multihitdb.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/multihitdb.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/taxonomy.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/taxonomy.sh.h -[ 26%] Generating ../generated/enrich.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true enrich.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/multihitdb.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/multihitdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl multihitsearch.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/multihitsearch.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl enrich.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/enrich.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/taxpercontig.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/taxpercontig.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/taxonomy.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/taxonomy.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/multihitdb.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/multihitdb.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/multihitsearch.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/multihitsearch.sh.h.tmp -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_avx' +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/taxpercontig.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/taxpercontig.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/multihitdb.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/multihitdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/multihitsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/multihitsearch.sh.h +[ 26%] Generating ../generated/enrich.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true enrich.sh +[ 26%] Generating ../generated/blastn.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastn.sh [ 27%] Generating ../generated/searchslicedtargetprofile.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh -[ 27%] Generating ../generated/blastn.sh.h +[ 27%] Generating ../generated/linsearch.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true linsearch.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated -[ 27%] Built target ksw2 -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastn.sh -[ 28%] Generating ../generated/databases.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl enrich.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/enrich.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastn.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/blastn.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/searchslicedtargetprofile.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl linsearch.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/linsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/enrich.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/enrich.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/blastn.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/blastn.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/searchslicedtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/searchslicedtargetprofile.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/linsearch.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/linsearch.sh.h.tmp +[ 28%] Generating ../generated/databases.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/enrich.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/enrich.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true databases.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/searchslicedtargetprofile.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/blastn.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/blastn.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/searchslicedtargetprofile.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/searchslicedtargetprofile.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/linsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/linsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated -[ 28%] Generating ../generated/linsearch.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/enrich.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/enrich.sh.h +make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_avx' +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl databases.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/databases.sh.h [ 28%] Generating ../generated/nucleotide_clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true linsearch.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true nucleotide_clustering.sh +[ 28%] Built target ksw2 cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/searchslicedtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/searchslicedtargetprofile.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastn.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/blastn.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_avx/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl databases.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/databases.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/searchslicedtargetprofile.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/searchslicedtargetprofile.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/blastn.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/blastn.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl linsearch.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/linsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/mmseqs2-12-113e3+ds/build_avx/generated/nucleotide_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/databases.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/databases.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/blastn.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/blastn.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/databases.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/databases.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/linsearch.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/linsearch.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/linsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/linsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_avx/generated/nucleotide_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_avx/generated/nucleotide_clustering.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/databases.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/databases.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_avx/generated/nucleotide_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_avx/generated/nucleotide_clustering.sh.h make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_avx' [ 28%] Built target generated @@ -1954,29 +1989,29 @@ make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_avx' [ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.cpp -[ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o -[ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o -[ 31%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o -[ 31%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/MultipleAlignment.cpp +[ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode 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-I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/BandedNucleotideAligner.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/BandedNucleotideAligner.cpp cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/rescorediagonal.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/rescorediagonal.cpp -[ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o +[ 33%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/Main.cpp -[ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o +[ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/AlignmentSymmetry.cpp +[ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp 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Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/ClusteringAlgorithms.cpp @@ -2190,9 +2225,9 @@ cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2profile.cpp [ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2pp.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2pp.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2pp.cpp -[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o +[ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2repseq.cpp +[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/result2stats.cpp [ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o cd /build/mmseqs2-12-113e3+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_avx/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/reverseseq.cpp @@ -2296,23 +2331,23 @@ make[3]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_avx' /usr/bin/cmake -E cmake_progress_start /build/mmseqs2-12-113e3+ds/build_avx/CMakeFiles 0 make[2]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_avx' - cd build_sse4.1 && make -j16 "INSTALL=install --strip-program=true" VERBOSE=1 + cd build_sse4.1 && make -j15 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' /usr/bin/cmake -S/build/mmseqs2-12-113e3+ds -B/build/mmseqs2-12-113e3+ds/build_sse4.1 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/mmseqs2-12-113e3+ds/build_sse4.1/CMakeFiles /build/mmseqs2-12-113e3+ds/build_sse4.1//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' make -f lib/microtar/CMakeFiles/microtar.dir/build.make lib/microtar/CMakeFiles/microtar.dir/depend +make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' +cd /build/mmseqs2-12-113e3+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/microtar /build/mmseqs2-12-113e3+ds/build_sse4.1 /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/microtar /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/microtar/CMakeFiles/microtar.dir/DependInfo.cmake --color= make -f lib/cacode/CMakeFiles/cacode.dir/build.make lib/cacode/CMakeFiles/cacode.dir/depend make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/depend make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/depend make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/depend -make -f src/version/CMakeFiles/version.dir/build.make src/version/CMakeFiles/version.dir/depend -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' -cd /build/mmseqs2-12-113e3+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/microtar /build/mmseqs2-12-113e3+ds/build_sse4.1 /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/microtar /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/microtar/CMakeFiles/microtar.dir/DependInfo.cmake --color= -make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' cd /build/mmseqs2-12-113e3+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/cacode /build/mmseqs2-12-113e3+ds/build_sse4.1 /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/cacode /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/cacode/CMakeFiles/cacode.dir/DependInfo.cmake --color= +make -f src/version/CMakeFiles/version.dir/build.make src/version/CMakeFiles/version.dir/depend +make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' cd /build/mmseqs2-12-113e3+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/ksw2 /build/mmseqs2-12-113e3+ds/build_sse4.1 /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/ksw2 /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/ksw2/CMakeFiles/ksw2.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' @@ -2320,352 +2355,352 @@ make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' cd /build/mmseqs2-12-113e3+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/src/version /build/mmseqs2-12-113e3+ds/build_sse4.1 /build/mmseqs2-12-113e3+ds/build_sse4.1/src/version 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newer than depender "/build/mmseqs2-12-113e3+ds/build_sse4.1/lib/ksw2/CMakeFiles/ksw2.dir/depend.internal". +Dependee "/build/mmseqs2-12-113e3+ds/build_sse4.1/lib/ksw2/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse4.1/lib/ksw2/CMakeFiles/ksw2.dir/depend.internal". +make -f src/version/CMakeFiles/version.dir/build.make src/version/CMakeFiles/version.dir/build +make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/build +Scanning dependencies of target ksw2 make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' -make -f src/version/CMakeFiles/version.dir/build.make src/version/CMakeFiles/version.dir/build make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/build -Scanning dependencies of target alp -[ 0%] Building C object lib/tinyexpr/CMakeFiles/tinyexpr.dir/tinyexpr.c.o make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' -[ 1%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/lambda_calculator.cpp.o -[ 2%] Building C object lib/microtar/CMakeFiles/microtar.dir/microtar.c.o -[ 3%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/lubksb.cpp.o -[ 3%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/tinyexpr && /usr/bin/cc -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -ansi 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-I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/lambda_calculator.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/lambda_calculator.cpp -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 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lib/cacode/CMakeFiles/cacode.dir/lambda_calculator.cpp.o [ 3%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/ludcmp.cpp.o -cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true nucleotide.out -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/ludcmp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/ludcmp.cpp -[ 3%] Generating ../generated/VTML80.out.h -[ 4%] Generating ../generated/PAM30.out.h +[ 3%] Generating ../generated/nucleotide.out.h +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/lambda_calculator.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/lambda_calculator.cpp +Scanning dependencies of target alp +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/lubksb.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/lubksb.cpp [ 4%] Generating ../generated/blosum62.out.h -[ 5%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h +make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' +make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/build +[ 4%] Building C object lib/tinyexpr/CMakeFiles/tinyexpr.dir/tinyexpr.c.o +[ 5%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o +cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true VTML40.out +make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' [ 5%] Building CXX object lib/ksw2/CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o -[ 6%] Generating ../generated/VTML40.out.h -[ 6%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h -cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true VTML80.out -cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blosum62.out -cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true PAM30.out +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/tinyexpr && /usr/bin/cc -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -ansi -Wall -Wshadow -fPIC -O3 -o CMakeFiles/tinyexpr.dir/tinyexpr.c.o -c /build/mmseqs2-12-113e3+ds/lib/tinyexpr/tinyexpr.c +[ 5%] Generating ../generated/PAM30.out.h +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time 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true VTML40.out -[ 6%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprob.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/nrutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/nrutil.cpp +cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true nucleotide.out +[ 5%] Building CXX object 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/build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib +[ 5%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_random.cpp.o +cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blosum62.out +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_random.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_random.cpp +cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true PAM30.out cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated -[ 7%] Linking CXX static library libversion.a -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated -cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated -cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated -cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl nucleotide.out > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/nucleotide.out.h +[ 6%] Linking CXX static library libversion.a cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl VTML80.out > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/VTML80.out.h -cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blosum62.out > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blosum62.out.h +cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl VTML40.out > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/VTML40.out.h +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake +cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl nucleotide.out > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/nucleotide.out.h cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 +cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blosum62.out > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blosum62.out.h cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl PAM30.out > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/PAM30.out.h -cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl VTML40.out > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/VTML40.out.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h -cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/nucleotide.out.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/nucleotide.out.h.tmp cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/VTML80.out.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/VTML80.out.h.tmp +cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/VTML40.out.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/VTML40.out.h.tmp +/usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o +[ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogprobproto.cpp +cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/nucleotide.out.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/nucleotide.out.h.tmp +/usr/bin/ranlib libversion.a +make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blosum62.out.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blosum62.out.h.tmp cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/PAM30.out.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/PAM30.out.h.tmp -/usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o -[ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_random.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_random.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_random.cpp -cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/VTML40.out.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/VTML40.out.h.tmp -cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/nucleotide.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/nucleotide.out.h cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/VTML80.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/VTML80.out.h +[ 7%] Linking C static library libmicrotar.a +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake +cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/VTML40.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/VTML40.out.h +cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/nucleotide.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/nucleotide.out.h cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blosum62.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blosum62.out.h +[ 7%] Built target version cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/PAM30.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/PAM30.out.h -cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/VTML40.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/VTML40.out.h -/usr/bin/ranlib libversion.a -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 +[ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o +[ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o +/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstat.cpp +[ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o +[ 9%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib +[ 9%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h +/usr/bin/ranlib libmicrotar.a +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstatmatrix.cpp make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' +cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated +[ 9%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_sim.cpp +[ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib +cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_pvalues.cpp +[ 10%] Built target microtar +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +[ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogproblim.cpp cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h -[ 7%] Linking C static library libmicrotar.a -[ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -[ 8%] Built target version -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h -[ 9%] Generating ../generated/Library255_may17.lib.h -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogprobproto.cpp +cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h.tmp +[ 11%] Generating ../generated/Library255_may17.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true Library255_may17.lib -[ 9%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h -[ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstat.cpp -[ 9%] Generating ../generated/libPolished_8.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated -[ 9%] Generating ../generated/krona_prelude.html.h -[ 10%] Generating ../generated/cs219.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl Library255_may17.lib > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/Library255_may17.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h +[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alignment_evaluer.cpp +cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp +[ 11%] Generating ../generated/libPolished_8.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true libPolished_8.lib -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true krona_prelude.html +[ 12%] Generating ../generated/cs219.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true cs219.lib -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 -cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated -[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstatmatrix.cpp -[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl Library255_may17.lib > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/Library255_may17.lib.h -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_sim.cpp -cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated -/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o +[ 13%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_regression.cpp +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/Library255_may17.lib.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/Library255_may17.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated -/usr/bin/ranlib libmicrotar.a cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/Library255_may17.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/Library255_may17.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl libPolished_8.lib > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/libPolished_8.lib.h -[ 12%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl krona_prelude.html > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/krona_prelude.html.h -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_pvalues.cpp cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl cs219.lib > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/cs219.lib.h +[ 13%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/libPolished_8.lib.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/libPolished_8.lib.h.tmp -[ 12%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/Library255_may17.lib.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/Library255_may17.lib.h.tmp -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogproblim.cpp -[ 12%] Built target microtar -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h.tmp +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp.cpp cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/libPolished_8.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/libPolished_8.lib.h -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h +[ 13%] Generating ../generated/krona_prelude.html.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true krona_prelude.html cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/cs219.lib.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/cs219.lib.h.tmp -[ 12%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alignment_evaluer.cpp -[ 13%] Generating ../generated/result_viz_prelude.html.zst.h -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/Library255_may17.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/Library255_may17.lib.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true result_viz_prelude.html.zst +cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/cs219.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/cs219.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl krona_prelude.html > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/krona_prelude.html.h +[ 14%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstatutil.cpp +[ 15%] Generating ../generated/result_viz_prelude.html.zst.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true result_viz_prelude.html.zst cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated -[ 13%] Generating ../generated/easysearch.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easysearch.sh cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h -[ 13%] Generating ../generated/easycluster.sh.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h +[ 15%] Generating ../generated/easysearch.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easysearch.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easysearch.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easysearch.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easysearch.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easysearch.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/krona_prelude.html.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/krona_prelude.html.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easysearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easysearch.sh.h +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/krona_prelude.html.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/krona_prelude.html.h +[ 15%] Generating ../generated/easycluster.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easycluster.sh +[ 16%] Generating ../generated/easytaxonomy.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easytaxonomy.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated -[ 14%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_regression.cpp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easysearch.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easysearch.sh.h +make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easycluster.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easycluster.sh.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/krona_prelude.html.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/krona_prelude.html.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h.tmp -[ 14%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp.cpp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easysearch.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easysearch.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easytaxonomy.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easytaxonomy.sh.h +[ 16%] Built target cacode cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easycluster.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easycluster.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/krona_prelude.html.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/krona_prelude.html.h -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easysearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easysearch.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easytaxonomy.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easytaxonomy.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easycluster.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easycluster.sh.h -[ 14%] Generating ../generated/blastpgp.sh.h -[ 15%] Generating ../generated/easytaxonomy.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastpgp.sh -[ 16%] Generating ../generated/blastp.sh.h [ 16%] Generating ../generated/easyrbh.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easytaxonomy.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easyrbh.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastp.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easytaxonomy.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easytaxonomy.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastpgp.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastpgp.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easytaxonomy.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easytaxonomy.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easyrbh.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easyrbh.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easyrbh.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easyrbh.sh.h.tmp +[ 17%] Linking C static library libtinyexpr.a +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easyrbh.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easyrbh.sh.h +[ 17%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_basic.cpp +[ 18%] Generating ../generated/blastp.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastp.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastp.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastp.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastpgp.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastpgp.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 +[ 18%] Generating ../generated/blastpgp.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastpgp.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastp.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastp.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastpgp.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastpgp.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easyrbh.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easyrbh.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easytaxonomy.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easytaxonomy.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated +/usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastp.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastp.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easyrbh.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easyrbh.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easytaxonomy.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/easytaxonomy.sh.h -[ 17%] Generating ../generated/map.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastpgp.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastpgp.sh.h +/usr/bin/ranlib libtinyexpr.a +make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastpgp.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastpgp.sh.h.tmp +[ 19%] Generating ../generated/map.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true map.sh -[ 18%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -[ 18%] Generating ../generated/rbh.sh.h -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstatutil.cpp -[ 19%] Generating ../generated/linclust.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastpgp.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastpgp.sh.h +[ 19%] Built target tinyexpr cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true rbh.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true linclust.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl map.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/map.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated -[ 20%] Linking C static library libtinyexpr.a -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake +[ 20%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/map.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/map.sh.h.tmp +[ 20%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_data.cpp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/map.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/map.sh.h +cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_ioutil.cpp +[ 20%] Generating ../generated/rbh.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true rbh.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl rbh.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/rbh.sh.h +[ 21%] Generating ../generated/linclust.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true linclust.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl linclust.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/linclust.sh.h -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/map.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/map.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/rbh.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/rbh.sh.h.tmp -/usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/linclust.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/linclust.sh.h.tmp -/usr/bin/ranlib libtinyexpr.a cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/rbh.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/rbh.sh.h -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/linclust.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/linclust.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/linclust.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/linclust.sh.h -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' -[ 20%] Built target tinyexpr -[ 20%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_basic.cpp -[ 20%] Generating ../generated/clustering.sh.h +[ 21%] Generating ../generated/clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true clustering.sh -[ 20%] Built target cacode -[ 20%] Generating ../generated/cascaded_clustering.sh.h -[ 21%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true cascaded_clustering.sh -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_data.cpp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated +[ 21%] Generating ../generated/cascaded_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl clustering.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true cascaded_clustering.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated +make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/cascaded_clustering.sh.h -[ 21%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_ioutil.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/clustering.sh.h.tmp -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/cascaded_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/cascaded_clustering.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/cascaded_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/cascaded_clustering.sh.h -[ 21%] Built target ksw2 [ 22%] Generating ../generated/update_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true update_clustering.sh +[ 22%] Built target ksw2 +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/cascaded_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/cascaded_clustering.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl update_clustering.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/update_clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/cascaded_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/cascaded_clustering.sh.h [ 22%] Generating ../generated/searchtargetprofile.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/update_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/update_clustering.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true searchtargetprofile.sh [ 23%] Generating ../generated/createindex.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true createindex.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/update_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/update_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated [ 23%] Generating ../generated/createtaxdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true createtaxdb.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl update_clustering.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/update_clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/searchtargetprofile.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl createindex.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/createindex.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/searchtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/searchtargetprofile.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl createindex.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/createindex.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl createtaxdb.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/createtaxdb.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/searchtargetprofile.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/searchtargetprofile.sh.h -[ 24%] Generating ../generated/translated_search.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/update_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/update_clustering.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/searchtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/searchtargetprofile.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/createindex.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/createindex.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true translated_search.sh +[ 24%] Generating ../generated/translated_search.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/createtaxdb.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/createtaxdb.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/update_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/update_clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true translated_search.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/searchtargetprofile.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/searchtargetprofile.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/createindex.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/createindex.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/createtaxdb.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/createtaxdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated [ 24%] Generating ../generated/taxonomy.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true taxonomy.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/createtaxdb.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/createtaxdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl translated_search.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/translated_search.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated +[ 25%] Generating ../generated/taxpercontig.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true taxpercontig.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl taxonomy.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/taxonomy.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/translated_search.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/translated_search.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl taxpercontig.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/taxpercontig.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/translated_search.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/translated_search.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/taxonomy.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/taxonomy.sh.h.tmp -[ 25%] Generating ../generated/taxpercontig.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true taxpercontig.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/taxpercontig.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/taxpercontig.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/taxonomy.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/taxonomy.sh.h [ 25%] Generating ../generated/multihitdb.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/taxpercontig.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/taxpercontig.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true multihitdb.sh -[ 25%] Generating ../generated/multihitsearch.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true multihitsearch.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl taxpercontig.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/taxpercontig.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl multihitdb.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/multihitdb.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/taxpercontig.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/taxpercontig.sh.h.tmp -[ 25%] Generating ../generated/blastn.sh.h +[ 25%] Generating ../generated/multihitsearch.sh.h [ 26%] Generating ../generated/enrich.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true multihitsearch.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true enrich.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastn.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl multihitsearch.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/multihitsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/multihitdb.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/multihitdb.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/taxpercontig.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/taxpercontig.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated +[ 26%] Generating ../generated/blastn.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastn.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/multihitsearch.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/multihitsearch.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/multihitdb.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/multihitdb.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastn.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastn.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl multihitsearch.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/multihitsearch.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl enrich.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/enrich.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/multihitsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/multihitsearch.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastn.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastn.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/multihitsearch.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/multihitsearch.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/enrich.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/enrich.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastn.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastn.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastn.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastn.sh.h [ 27%] Generating ../generated/searchslicedtargetprofile.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/enrich.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/enrich.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/multihitsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/multihitsearch.sh.h [ 27%] Generating ../generated/linsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true linsearch.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/enrich.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/enrich.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastn.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/blastn.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl linsearch.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/linsearch.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/linsearch.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/linsearch.sh.h.tmp +[ 27%] Generating ../generated/nucleotide_clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true nucleotide_clustering.sh [ 28%] Generating ../generated/databases.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true databases.sh -[ 28%] Generating ../generated/nucleotide_clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true nucleotide_clustering.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/linsearch.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/linsearch.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/linsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/linsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse4.1/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/linsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/linsearch.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl databases.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/databases.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/nucleotide_clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl databases.sh > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/databases.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/nucleotide_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/nucleotide_clustering.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/nucleotide_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/nucleotide_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/databases.sh.h > /build/mmseqs2-12-113e3+ds/build_sse4.1/generated/databases.sh.h.tmp @@ -2683,40 +2718,40 @@ make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' make -f src/CMakeFiles/mmseqs-framework.dir/build.make src/CMakeFiles/mmseqs-framework.dir/build make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' -[ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o -[ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 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src/CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o +[ 28%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o +[ 28%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons 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-I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization 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-I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/Matcher.cpp cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode 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CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -c /build/mmseqs2-12-113e3+ds/src/prefiltering/UngappedAlignment.cpp [ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse4.1/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -c /build/mmseqs2-12-113e3+ds/src/multihit/besthitperset.cpp [ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o @@ -3027,7 +3062,7 @@ make[3]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' /usr/bin/cmake -E cmake_progress_start /build/mmseqs2-12-113e3+ds/build_sse4.1/CMakeFiles 0 make[2]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' - cd build_ssse3 && make -j16 "INSTALL=install --strip-program=true" VERBOSE=1 + cd build_ssse3 && make -j15 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/mmseqs2-12-113e3+ds/build_ssse3' /usr/bin/cmake -S/build/mmseqs2-12-113e3+ds -B/build/mmseqs2-12-113e3+ds/build_ssse3 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/mmseqs2-12-113e3+ds/build_ssse3/CMakeFiles /build/mmseqs2-12-113e3+ds/build_ssse3//CMakeFiles/progress.marks @@ -3035,372 +3070,372 @@ make[3]: Entering directory '/build/mmseqs2-12-113e3+ds/build_ssse3' make -f lib/microtar/CMakeFiles/microtar.dir/build.make lib/microtar/CMakeFiles/microtar.dir/depend make -f lib/cacode/CMakeFiles/cacode.dir/build.make lib/cacode/CMakeFiles/cacode.dir/depend -make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/depend -make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/depend -make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/depend -make -f src/version/CMakeFiles/version.dir/build.make src/version/CMakeFiles/version.dir/depend make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_ssse3' cd /build/mmseqs2-12-113e3+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/microtar /build/mmseqs2-12-113e3+ds/build_ssse3 /build/mmseqs2-12-113e3+ds/build_ssse3/lib/microtar /build/mmseqs2-12-113e3+ds/build_ssse3/lib/microtar/CMakeFiles/microtar.dir/DependInfo.cmake --color= -make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend +make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/depend make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_ssse3' cd /build/mmseqs2-12-113e3+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/cacode /build/mmseqs2-12-113e3+ds/build_ssse3 /build/mmseqs2-12-113e3+ds/build_ssse3/lib/cacode /build/mmseqs2-12-113e3+ds/build_ssse3/lib/cacode/CMakeFiles/cacode.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_ssse3' -cd /build/mmseqs2-12-113e3+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/ksw2 /build/mmseqs2-12-113e3+ds/build_ssse3 /build/mmseqs2-12-113e3+ds/build_ssse3/lib/ksw2 /build/mmseqs2-12-113e3+ds/build_ssse3/lib/ksw2/CMakeFiles/ksw2.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_ssse3' cd /build/mmseqs2-12-113e3+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/alp /build/mmseqs2-12-113e3+ds/build_ssse3 /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp/CMakeFiles/alp.dir/DependInfo.cmake --color= +make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/depend make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_ssse3' -cd /build/mmseqs2-12-113e3+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/src/version /build/mmseqs2-12-113e3+ds/build_ssse3 /build/mmseqs2-12-113e3+ds/build_ssse3/src/version /build/mmseqs2-12-113e3+ds/build_ssse3/src/version/CMakeFiles/version.dir/DependInfo.cmake --color= +cd /build/mmseqs2-12-113e3+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/ksw2 /build/mmseqs2-12-113e3+ds/build_ssse3 /build/mmseqs2-12-113e3+ds/build_ssse3/lib/ksw2 /build/mmseqs2-12-113e3+ds/build_ssse3/lib/ksw2/CMakeFiles/ksw2.dir/DependInfo.cmake --color= +make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/depend make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_ssse3' cd /build/mmseqs2-12-113e3+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/data /build/mmseqs2-12-113e3+ds/build_ssse3 /build/mmseqs2-12-113e3+ds/build_ssse3/data /build/mmseqs2-12-113e3+ds/build_ssse3/data/CMakeFiles/generated.dir/DependInfo.cmake --color= +make -f src/version/CMakeFiles/version.dir/build.make src/version/CMakeFiles/version.dir/depend +make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend +make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_ssse3' +cd /build/mmseqs2-12-113e3+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/src/version /build/mmseqs2-12-113e3+ds/build_ssse3 /build/mmseqs2-12-113e3+ds/build_ssse3/src/version 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Scanning dependencies of target tinyexpr -Scanning dependencies of target generated -Scanning dependencies of target cacode make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_ssse3' -make -f lib/microtar/CMakeFiles/microtar.dir/build.make lib/microtar/CMakeFiles/microtar.dir/build -Dependee "/build/mmseqs2-12-113e3+ds/build_ssse3/lib/ksw2/CMakeFiles/ksw2.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_ssse3/lib/ksw2/CMakeFiles/ksw2.dir/depend.internal". -Dependee "/build/mmseqs2-12-113e3+ds/build_ssse3/lib/ksw2/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_ssse3/lib/ksw2/CMakeFiles/ksw2.dir/depend.internal". make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_ssse3' -Scanning dependencies of target ksw2 +[ 1%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/lambda_calculator.cpp.o make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_ssse3' make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/build -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_ssse3' make -f src/version/CMakeFiles/version.dir/build.make src/version/CMakeFiles/version.dir/build -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_ssse3' -make -f lib/cacode/CMakeFiles/cacode.dir/build.make lib/cacode/CMakeFiles/cacode.dir/build make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_ssse3' +cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/lambda_calculator.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/lambda_calculator.cpp +Scanning dependencies of target alp make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_ssse3' -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_ssse3' +[ 1%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/lubksb.cpp.o +make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/build make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/build make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_ssse3' -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_ssse3' -Dependee "/build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp/CMakeFiles/alp.dir/DependInfo.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp/CMakeFiles/alp.dir/depend.internal". -Dependee "/build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp/CMakeFiles/alp.dir/depend.internal". -make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/build make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_ssse3' -[ 0%] Generating ../generated/VTML80.out.h -[ 0%] Building CXX object src/version/CMakeFiles/version.dir/Version.cpp.o -[ 1%] Generating ../generated/blosum62.out.h -[ 1%] Generating ../generated/nucleotide.out.h -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src/version && /usr/bin/c++ -DGIT_SHA1=12-113e3+ds-3 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/version.dir/Version.cpp.o -c /build/mmseqs2-12-113e3+ds/src/version/Version.cpp -[ 1%] Building C object lib/tinyexpr/CMakeFiles/tinyexpr.dir/tinyexpr.c.o -cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true VTML80.out +cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/lubksb.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/lubksb.cpp make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_ssse3' -cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true nucleotide.out -cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blosum62.out +[ 1%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/ludcmp.cpp.o [ 2%] Building C object lib/microtar/CMakeFiles/microtar.dir/microtar.c.o -Scanning dependencies of target alp +cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/microtar && /usr/bin/cc -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr 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Building CXX object lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/ksw2 && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/ksw2/ksw2_extz2_sse.cpp +cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar 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/build/mmseqs2-12-113e3+ds/lib/microtar/microtar.c -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_ssse3' +[ 3%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprob.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogprob.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogprob.cpp [ 4%] Generating 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/build/mmseqs2-12-113e3+ds/build_ssse3/generated -cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/ksw2 && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/ksw2/ksw2_extz2_sse.cpp -cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/lubksb.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/lubksb.cpp -[ 6%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib -cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated -cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blosum62.out > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blosum62.out.h -cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/ludcmp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/ludcmp.cpp cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated -cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/nrutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/nrutil.cpp -cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/VTML80.out.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/VTML80.out.h.tmp -cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/nucleotide.out.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/nucleotide.out.h.tmp -[ 6%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprob.cpp.o cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl VTML40.out > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/VTML40.out.h -cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogprob.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogprob.cpp -cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated -[ 7%] Linking CXX static library libversion.a -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h +cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/VTML80.out.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/VTML80.out.h.tmp +[ 6%] Linking CXX static library libversion.a +cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl nucleotide.out > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/nucleotide.out.h cd /build/mmseqs2-12-113e3+ds/build_ssse3/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake -cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blosum62.out.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blosum62.out.h.tmp -cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl PAM30.out > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/PAM30.out.h -cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/VTML80.out.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/VTML80.out.h -cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/nucleotide.out.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/nucleotide.out.h cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/VTML40.out.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/VTML40.out.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/VTML80.out.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/VTML80.out.h +[ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstatmatrix.cpp cd /build/mmseqs2-12-113e3+ds/build_ssse3/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 -cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blosum62.out.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blosum62.out.h -cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/PAM30.out.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/PAM30.out.h.tmp +cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/nucleotide.out.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/nucleotide.out.h.tmp cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/VTML40.out.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/VTML40.out.h +cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/nucleotide.out.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/nucleotide.out.h /usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o +[ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o /usr/bin/ranlib libversion.a -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h.tmp +[ 7%] Linking C static library libmicrotar.a +cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake +cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_sim.cpp +[ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_ssse3' +cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_pvalues.cpp +[ 9%] Generating ../generated/blosum62.out.h +cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blosum62.out +[ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o +[ 9%] Generating ../generated/PAM30.out.h +cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogproblim.cpp +cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true PAM30.out +cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated +cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 +[ 9%] Built target version +cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated +/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o +cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blosum62.out > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blosum62.out.h +/usr/bin/ranlib libmicrotar.a +cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl PAM30.out > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/PAM30.out.h +make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_ssse3' +[ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alignment_evaluer.cpp +cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blosum62.out.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blosum62.out.h.tmp +cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/PAM30.out.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/PAM30.out.h.tmp +[ 9%] Built target microtar +cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blosum62.out.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blosum62.out.h cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/PAM30.out.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/PAM30.out.h -[ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_random.cpp.o -[ 7%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h -cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_random.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_random.cpp -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp -[ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogprobproto.cpp -[ 8%] Built target version +[ 10%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib +[ 10%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h +[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib +cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_regression.cpp +[ 11%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib -[ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h -cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstat.cpp -[ 8%] Linking C static library libmicrotar.a cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated -cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake +cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated +cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h -[ 9%] Generating ../generated/Library255_may17.lib.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true Library255_may17.lib -cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 -[ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o -[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstatmatrix.cpp -cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_pvalues.cpp -cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_sim.cpp +cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp.cpp cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h.tmp -/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o -[ 11%] Generating ../generated/libPolished_8.lib.h -[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogproblim.cpp -cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated -/usr/bin/ranlib libmicrotar.a -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true libPolished_8.lib -[ 12%] Generating ../generated/cs219.lib.h -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_ssse3' cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true cs219.lib -[ 12%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alignment_evaluer.cpp -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl Library255_may17.lib > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/Library255_may17.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp +[ 12%] Generating ../generated/Library255_may17.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true Library255_may17.lib +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated -[ 12%] Built target microtar +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl Library255_may17.lib > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/Library255_may17.lib.h +[ 13%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstatutil.cpp +[ 13%] Generating ../generated/libPolished_8.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true libPolished_8.lib cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl libPolished_8.lib > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/libPolished_8.lib.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl cs219.lib > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/cs219.lib.h -[ 13%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/libPolished_8.lib.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/libPolished_8.lib.h.tmp -cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_regression.cpp cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/Library255_may17.lib.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/Library255_may17.lib.h.tmp -[ 13%] Generating ../generated/krona_prelude.html.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/libPolished_8.lib.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/libPolished_8.lib.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/Library255_may17.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/Library255_may17.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/libPolished_8.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/libPolished_8.lib.h +[ 14%] Generating ../generated/cs219.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true cs219.lib +[ 14%] Generating ../generated/krona_prelude.html.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true krona_prelude.html -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/Library255_may17.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/Library255_may17.lib.h -[ 14%] Generating ../generated/result_viz_prelude.html.zst.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/cs219.lib.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/cs219.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated -[ 14%] Generating ../generated/easysearch.sh.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true result_viz_prelude.html.zst -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easysearch.sh -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/cs219.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/cs219.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl cs219.lib > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/cs219.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl krona_prelude.html > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/krona_prelude.html.h -[ 14%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp.cpp +cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/cs219.lib.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/cs219.lib.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/cs219.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/cs219.lib.h +[ 15%] Generating ../generated/result_viz_prelude.html.zst.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true result_viz_prelude.html.zst cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/result_viz_prelude.html.zst.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easysearch.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easysearch.sh.h -[ 15%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easysearch.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easysearch.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstatutil.cpp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easysearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easysearch.sh.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/krona_prelude.html.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/krona_prelude.html.h.tmp +make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_ssse3' +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/krona_prelude.html.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/krona_prelude.html.h cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/result_viz_prelude.html.zst.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/result_viz_prelude.html.zst.h.tmp +[ 15%] Built target cacode cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/result_viz_prelude.html.zst.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/result_viz_prelude.html.zst.h +[ 15%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o +[ 15%] Generating ../generated/easysearch.sh.h +cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_basic.cpp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easysearch.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated [ 15%] Generating ../generated/easycluster.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easycluster.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easysearch.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easysearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated -[ 16%] Generating ../generated/easytaxonomy.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easycluster.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easycluster.sh.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/krona_prelude.html.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/krona_prelude.html.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easytaxonomy.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easysearch.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easysearch.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easycluster.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easycluster.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/krona_prelude.html.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/krona_prelude.html.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easysearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easysearch.sh.h +[ 16%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_data.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easycluster.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easycluster.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easytaxonomy.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easytaxonomy.sh.h [ 17%] Linking C static library libtinyexpr.a -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easytaxonomy.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easytaxonomy.sh.h.tmp +[ 18%] Generating ../generated/easytaxonomy.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easytaxonomy.sh cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake -[ 17%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -[ 17%] Generating ../generated/easyrbh.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easyrbh.sh -cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_basic.cpp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easytaxonomy.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easytaxonomy.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easytaxonomy.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easytaxonomy.sh.h +[ 18%] Generating ../generated/easyrbh.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easyrbh.sh cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easyrbh.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easyrbh.sh.h -[ 18%] Generating ../generated/blastp.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastp.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easyrbh.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easyrbh.sh.h.tmp +[ 18%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_ioutil.cpp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easyrbh.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easyrbh.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easytaxonomy.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easytaxonomy.sh.h.tmp /usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easytaxonomy.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easytaxonomy.sh.h /usr/bin/ranlib libtinyexpr.a -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastp.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastp.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easyrbh.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easyrbh.sh.h.tmp make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_ssse3' cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easyrbh.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/easyrbh.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastp.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastp.sh.h.tmp -[ 18%] Built target tinyexpr -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastp.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastp.sh.h -[ 18%] Generating ../generated/blastpgp.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastpgp.sh -[ 19%] Generating ../generated/map.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true map.sh +[ 19%] Generating ../generated/blastp.sh.h +[ 19%] Built target tinyexpr +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastp.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated -[ 19%] Generating ../generated/rbh.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true rbh.sh +[ 19%] Generating ../generated/blastpgp.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastp.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastp.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastpgp.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastp.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastp.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastpgp.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastpgp.sh.h +[ 20%] Generating ../generated/map.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastp.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastp.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true map.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl map.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/map.sh.h make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_ssse3' -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl rbh.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/rbh.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastpgp.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastpgp.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/map.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/map.sh.h.tmp -[ 19%] Built target ksw2 +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl map.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/map.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastpgp.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastpgp.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/rbh.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/rbh.sh.h.tmp -[ 20%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/map.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/map.sh.h -cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_data.cpp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/rbh.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/rbh.sh.h -[ 20%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_ioutil.cpp -[ 20%] Generating ../generated/clustering.sh.h +[ 20%] Built target ksw2 +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/map.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/map.sh.h.tmp +[ 20%] Generating ../generated/rbh.sh.h [ 21%] Generating ../generated/linclust.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true rbh.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true linclust.sh -[ 21%] Generating ../generated/cascaded_clustering.sh.h +[ 21%] Generating ../generated/clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/map.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/map.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true clustering.sh -[ 22%] Generating ../generated/update_clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true cascaded_clustering.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true update_clustering.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl rbh.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/rbh.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl linclust.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/linclust.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl clustering.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_ssse3' -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/linclust.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/linclust.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl update_clustering.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/update_clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/rbh.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/rbh.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/clustering.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/cascaded_clustering.sh.h -[ 22%] Built target cacode -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/linclust.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/linclust.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/update_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/update_clustering.sh.h.tmp +[ 21%] Generating ../generated/cascaded_clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/linclust.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/linclust.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true cascaded_clustering.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/rbh.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/rbh.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/cascaded_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/cascaded_clustering.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/update_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/update_clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/cascaded_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/cascaded_clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/linclust.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/linclust.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/cascaded_clustering.sh.h +[ 22%] Generating ../generated/update_clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true update_clustering.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated [ 22%] Generating ../generated/searchtargetprofile.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true searchtargetprofile.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/cascaded_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/cascaded_clustering.sh.h.tmp [ 23%] Generating ../generated/createindex.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true searchtargetprofile.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true createindex.sh -[ 23%] Generating ../generated/createtaxdb.sh.h -[ 24%] Generating ../generated/translated_search.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true createtaxdb.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true translated_search.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl update_clustering.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/update_clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/cascaded_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/cascaded_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl createindex.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/createindex.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/searchtargetprofile.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl createtaxdb.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/createtaxdb.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl translated_search.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/translated_search.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/createindex.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/createindex.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl createindex.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/createindex.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/update_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/update_clustering.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/searchtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/searchtargetprofile.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/createindex.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/createindex.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/update_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/update_clustering.sh.h +[ 23%] Generating ../generated/createtaxdb.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true createtaxdb.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/searchtargetprofile.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/searchtargetprofile.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/createindex.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/createindex.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl createtaxdb.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/createtaxdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/createtaxdb.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/createtaxdb.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/translated_search.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/translated_search.sh.h.tmp +[ 24%] Generating ../generated/translated_search.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true translated_search.sh [ 24%] Generating ../generated/taxonomy.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true taxonomy.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/createindex.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/createindex.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/searchtargetprofile.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/searchtargetprofile.sh.h +[ 25%] Generating ../generated/taxpercontig.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true taxpercontig.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/createtaxdb.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/createtaxdb.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/translated_search.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/translated_search.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl translated_search.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/translated_search.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl taxonomy.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/taxonomy.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl taxpercontig.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/taxpercontig.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/translated_search.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/translated_search.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/taxonomy.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/taxonomy.sh.h.tmp -[ 25%] Generating ../generated/taxpercontig.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true taxpercontig.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/taxpercontig.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/taxpercontig.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/taxonomy.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/taxonomy.sh.h [ 25%] Generating ../generated/multihitdb.sh.h -[ 25%] Generating ../generated/multihitsearch.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/translated_search.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/translated_search.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/taxpercontig.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/taxpercontig.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true multihitdb.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true multihitsearch.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl multihitdb.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/multihitdb.sh.h +[ 25%] Generating ../generated/multihitsearch.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true multihitsearch.sh [ 26%] Generating ../generated/enrich.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true enrich.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl taxpercontig.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/taxpercontig.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl multihitdb.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/multihitdb.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl multihitsearch.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/multihitsearch.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/multihitdb.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/multihitdb.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated [ 26%] Generating ../generated/blastn.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/taxpercontig.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/taxpercontig.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/multihitdb.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/multihitdb.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastn.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/multihitsearch.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/multihitsearch.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl enrich.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/enrich.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/taxpercontig.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/taxpercontig.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/multihitdb.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/multihitdb.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl multihitsearch.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/multihitsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/multihitsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/multihitsearch.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/enrich.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/enrich.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl enrich.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/enrich.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastn.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastn.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/enrich.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/enrich.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/multihitsearch.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/multihitsearch.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/enrich.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/enrich.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastn.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastn.sh.h.tmp [ 27%] Generating ../generated/searchslicedtargetprofile.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/multihitsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/multihitsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/enrich.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/enrich.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastn.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/blastn.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h [ 27%] Generating ../generated/linsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true linsearch.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated [ 28%] Generating ../generated/databases.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h.tmp +[ 28%] Generating ../generated/nucleotide_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true databases.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl linsearch.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/linsearch.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true nucleotide_clustering.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/linsearch.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/linsearch.sh.h.tmp -[ 28%] Generating ../generated/nucleotide_clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl databases.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/databases.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true nucleotide_clustering.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/linsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/linsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_ssse3/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/databases.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/databases.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl linsearch.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/linsearch.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl databases.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/databases.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/nucleotide_clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/databases.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/databases.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/linsearch.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/linsearch.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/nucleotide_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/nucleotide_clustering.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_ssse3/generated/databases.sh.h > /build/mmseqs2-12-113e3+ds/build_ssse3/generated/databases.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/linsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/linsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/nucleotide_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/nucleotide_clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_ssse3/generated/databases.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_ssse3/generated/databases.sh.h make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_ssse3' [ 28%] Built target generated make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_ssse3' @@ -3414,33 +3449,33 @@ make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_ssse3' make -f src/CMakeFiles/mmseqs-framework.dir/build.make src/CMakeFiles/mmseqs-framework.dir/build make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_ssse3' -[ 28%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o -[ 28%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o [ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o -[ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o -[ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o -[ 31%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o -[ 32%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/StripedSmithWaterman.cpp.o +[ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o +[ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o +[ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.cpp cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash 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-I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/Main.cpp -[ 32%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/PSSMCalculator.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp 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-I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/Matcher.cpp cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash 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-fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/PSSMCalculator.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/PSSMCalculator.cpp +[ 32%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/StripedSmithWaterman.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated 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-Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/BandedNucleotideAligner.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/BandedNucleotideAligner.cpp +[ 33%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o +[ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/rescorediagonal.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode 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/build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/Main.cpp cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/AlignmentSymmetry.cpp +[ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/Main.cpp +[ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/Clustering.cpp +[ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/ClusteringAlgorithms.cpp [ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/A3MReader.cpp @@ -3448,16 +3483,16 @@ cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Application.cpp [ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/BaseMatrix.cpp +[ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Command.cpp [ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/CommandCaller.cpp -[ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Command.cpp [ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/DBConcat.cpp -[ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/DBWriter.cpp [ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/DBReader.cpp +[ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/DBWriter.cpp [ 39%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Debug.cpp [ 39%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o @@ -3482,10 +3517,10 @@ cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Orf.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Orf.cpp [ 43%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Parameters.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Parameters.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Parameters.cpp -[ 43%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/LibraryReader.cpp [ 44%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/ProfileStates.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/ProfileStates.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/ProfileStates.cpp +[ 44%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/LibraryReader.cpp [ 45%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Sequence.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Sequence.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Sequence.cpp [ 45%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o @@ -3587,8 +3622,8 @@ [ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/offsetalignment.cpp [ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -[ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createseqfiledb.cpp +[ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/createsubdb.cpp [ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/view.cpp @@ -3605,8 +3640,8 @@ [ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/extractorfs.cpp [ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/orftocontig.cpp +[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/touchdb.cpp [ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -c /build/mmseqs2-12-113e3+ds/src/util/filterdb.cpp @@ -3714,10 +3749,10 @@ cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/EasyLinclust.cpp [ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Enrich.cpp -[ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o [ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Map.cpp cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Linsearch.cpp +[ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Map.cpp [ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o cd /build/mmseqs2-12-113e3+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_ssse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -c /build/mmseqs2-12-113e3+ds/src/workflow/Rbh.cpp [ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o @@ -3758,380 +3793,380 @@ make[3]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_ssse3' /usr/bin/cmake -E cmake_progress_start /build/mmseqs2-12-113e3+ds/build_ssse3/CMakeFiles 0 make[2]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_ssse3' - cd build_sse3 && make -j16 "INSTALL=install --strip-program=true" VERBOSE=1 + cd build_sse3 && make -j15 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse3' /usr/bin/cmake -S/build/mmseqs2-12-113e3+ds -B/build/mmseqs2-12-113e3+ds/build_sse3 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/mmseqs2-12-113e3+ds/build_sse3/CMakeFiles /build/mmseqs2-12-113e3+ds/build_sse3//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse3' make -f lib/microtar/CMakeFiles/microtar.dir/build.make lib/microtar/CMakeFiles/microtar.dir/depend -make -f lib/cacode/CMakeFiles/cacode.dir/build.make lib/cacode/CMakeFiles/cacode.dir/depend -make -f 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"/build/mmseqs2-12-113e3+ds/build_sse3/lib/microtar/CMakeFiles/microtar.dir/depend.internal". +Dependee "/build/mmseqs2-12-113e3+ds/build_sse3/lib/microtar/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/mmseqs2-12-113e3+ds/build_sse3/lib/microtar/CMakeFiles/microtar.dir/depend.internal". +Scanning dependencies of target microtar +make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/depend +make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse3' make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse3' cd /build/mmseqs2-12-113e3+ds/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/mmseqs2-12-113e3+ds /build/mmseqs2-12-113e3+ds/lib/ksw2 /build/mmseqs2-12-113e3+ds/build_sse3 /build/mmseqs2-12-113e3+ds/build_sse3/lib/ksw2 /build/mmseqs2-12-113e3+ds/build_sse3/lib/ksw2/CMakeFiles/ksw2.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse3' -cd 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directory '/build/mmseqs2-12-113e3+ds/build_sse3' +[ 2%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/lambda_calculator.cpp.o +[ 2%] Building CXX object lib/ksw2/CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/ksw2 && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/ksw2/ksw2_extz2_sse.cpp make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse3' make -f src/version/CMakeFiles/version.dir/build.make src/version/CMakeFiles/version.dir/build -Scanning dependencies of target alp -[ 0%] Generating ../generated/VTML80.out.h -make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/build -[ 1%] Generating ../generated/blosum62.out.h -[ 1%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/lubksb.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat 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/build/mmseqs2-12-113e3+ds/lib/cacode/lubksb.cpp +[ 2%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprob.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogprob.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogprob.cpp +[ 3%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o +[ 3%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_random.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/ludcmp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/ludcmp.cpp +cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_random.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_random.cpp [ 4%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o -make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse3' +cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogprobproto.cpp +[ 4%] Generating ../generated/VTML80.out.h +cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/cacode && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/cacode.dir/nrutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/cacode/nrutil.cpp cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true VTML80.out +[ 5%] Generating ../generated/VTML40.out.h +[ 5%] Building CXX object src/version/CMakeFiles/version.dir/Version.cpp.o +[ 5%] Generating ../generated/nucleotide.out.h +cd /build/mmseqs2-12-113e3+ds/build_sse3/src/version && /usr/bin/c++ -DGIT_SHA1=12-113e3+ds-3 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp 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lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse3' -make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/build -cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blosum62.out -[ 5%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true VTML40.out -cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true PAM30.out -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib -cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated +make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/build make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse3' -cd /build/mmseqs2-12-113e3+ds/data && mkdir 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/build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib +[ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_sim.cpp cd /build/mmseqs2-12-113e3+ds/data && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated -cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl VTML40.out > /build/mmseqs2-12-113e3+ds/build_sse3/generated/VTML40.out.h +[ 8%] Built target version +[ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_pvalues.cpp cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl PAM30.out > /build/mmseqs2-12-113e3+ds/build_sse3/generated/PAM30.out.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/mmseqs2-12-113e3+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h -cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/VTML80.out.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/VTML80.out.h.tmp +[ 9%] Linking C static library libmicrotar.a +cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/blosum62.out.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/blosum62.out.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated -cd /build/mmseqs2-12-113e3+ds/data && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl nucleotide.out > /build/mmseqs2-12-113e3+ds/build_sse3/generated/nucleotide.out.h -cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/VTML40.out.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/VTML40.out.h.tmp -[ 7%] Linking CXX static library libversion.a cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/PAM30.out.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/PAM30.out.h.tmp -cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/VTML80.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/VTML80.out.h -cd /build/mmseqs2-12-113e3+ds/build_sse3/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake +[ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogproblim.cpp +cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/blosum62.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/blosum62.out.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/mmseqs2-12-113e3+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h -cd /build/mmseqs2-12-113e3+ds/data && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/nucleotide.out.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/nucleotide.out.h.tmp -cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/VTML40.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/VTML40.out.h cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/PAM30.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/PAM30.out.h -cd /build/mmseqs2-12-113e3+ds/data && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/nucleotide.out.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/nucleotide.out.h -cd /build/mmseqs2-12-113e3+ds/build_sse3/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 +/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o +/usr/bin/ranlib libmicrotar.a +[ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o +make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse3' +[ 10%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h +cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alignment_evaluer.cpp +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib +cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/mmseqs2-12-113e3+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h +[ 10%] Built target microtar +[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_regression.cpp +[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp.cpp +[ 12%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstatutil.cpp +[ 12%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/mmseqs2-12-113e3+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h -/usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o -[ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_random.cpp.o -[ 7%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp -/usr/bin/ranlib libversion.a +[ 12%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib -cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_random.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_random.cpp -[ 8%] Generating ../generated/Library255_may17.lib.h -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true Library255_may17.lib -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse3' -[ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -[ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstat.cpp cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/mmseqs2-12-113e3+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h -[ 9%] Generating ../generated/libPolished_8.lib.h -cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogprobproto.cpp -[ 9%] Built target version -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true libPolished_8.lib -[ 10%] Generating ../generated/cs219.lib.h -cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true cs219.lib -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl Library255_may17.lib > /build/mmseqs2-12-113e3+ds/build_sse3/generated/Library255_may17.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h +[ 13%] Generating ../generated/Library255_may17.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true Library255_may17.lib cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated +[ 13%] Generating ../generated/libPolished_8.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true libPolished_8.lib +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl Library255_may17.lib > /build/mmseqs2-12-113e3+ds/build_sse3/generated/Library255_may17.lib.h cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated -[ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o -[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl libPolished_8.lib > /build/mmseqs2-12-113e3+ds/build_sse3/generated/libPolished_8.lib.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl cs219.lib > /build/mmseqs2-12-113e3+ds/build_sse3/generated/cs219.lib.h -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h -cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstatmatrix.cpp cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/libPolished_8.lib.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/libPolished_8.lib.h.tmp -cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_sim.cpp -[ 12%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o -[ 12%] Generating ../generated/krona_prelude.html.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true krona_prelude.html cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/libPolished_8.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/libPolished_8.lib.h -cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_pvalues.cpp -cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated -[ 12%] Linking C static library libmicrotar.a -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl krona_prelude.html > /build/mmseqs2-12-113e3+ds/build_sse3/generated/krona_prelude.html.h cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/Library255_may17.lib.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/Library255_may17.lib.h.tmp -cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/Library255_may17.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/Library255_may17.lib.h -[ 13%] Generating ../generated/result_viz_prelude.html.zst.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true result_viz_prelude.html.zst -[ 13%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/cs219.lib.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/cs219.lib.h.tmp -cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_dynprogproblim.cpp -cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 +[ 14%] Generating ../generated/cs219.lib.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true cs219.lib cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated -[ 13%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl cs219.lib > /build/mmseqs2-12-113e3+ds/build_sse3/generated/cs219.lib.h +[ 14%] Generating ../generated/krona_prelude.html.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true krona_prelude.html +cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl krona_prelude.html > /build/mmseqs2-12-113e3+ds/build_sse3/generated/krona_prelude.html.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/cs219.lib.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/cs219.lib.h.tmp cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/cs219.lib.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/cs219.lib.h +[ 15%] Generating ../generated/result_viz_prelude.html.zst.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true result_viz_prelude.html.zst +cd /build/mmseqs2-12-113e3+ds/data/resources && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated cd /build/mmseqs2-12-113e3+ds/data/resources && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/mmseqs2-12-113e3+ds/build_sse3/generated/result_viz_prelude.html.zst.h -cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alignment_evaluer.cpp -[ 14%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o -cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_regression.cpp -[ 14%] Generating ../generated/easysearch.sh.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/krona_prelude.html.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/krona_prelude.html.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/krona_prelude.html.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/krona_prelude.html.h +[ 15%] Generating ../generated/easysearch.sh.h +cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/result_viz_prelude.html.zst.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/result_viz_prelude.html.zst.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easysearch.sh -/usr/bin/ranlib libmicrotar.a -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse3' +cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/result_viz_prelude.html.zst.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/result_viz_prelude.html.zst.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easysearch.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/easysearch.sh.h -[ 14%] Built target microtar -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/result_viz_prelude.html.zst.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/result_viz_prelude.html.zst.h.tmp +[ 15%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_basic.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/easysearch.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/easysearch.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/result_viz_prelude.html.zst.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/result_viz_prelude.html.zst.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/easysearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/easysearch.sh.h -cd /build/mmseqs2-12-113e3+ds/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/krona_prelude.html.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/krona_prelude.html.h.tmp -[ 14%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp.cpp -[ 14%] Generating ../generated/easycluster.sh.h -[ 15%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o +[ 15%] Generating ../generated/easycluster.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easycluster.sh -cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_localmaxstatutil.cpp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easycluster.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/easycluster.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/easycluster.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/easycluster.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/easycluster.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/easycluster.sh.h [ 16%] Generating ../generated/easytaxonomy.sh.h -cd /build/mmseqs2-12-113e3+ds/data/resources && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/krona_prelude.html.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/krona_prelude.html.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easytaxonomy.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easycluster.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/easycluster.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easytaxonomy.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/easytaxonomy.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/easycluster.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/easycluster.sh.h.tmp -[ 16%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_basic.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/easytaxonomy.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/easytaxonomy.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/easycluster.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/easycluster.sh.h +[ 17%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_data.cpp +[ 18%] Linking C static library libtinyexpr.a +cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/easytaxonomy.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/easytaxonomy.sh.h -[ 16%] Generating ../generated/easyrbh.sh.h +cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 +[ 18%] Generating ../generated/easyrbh.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true easyrbh.sh -[ 17%] Generating ../generated/blastp.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastp.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated +/usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl easyrbh.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/easyrbh.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastp.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastp.sh.h +/usr/bin/ranlib libtinyexpr.a +make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse3' cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/easyrbh.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/easyrbh.sh.h.tmp -[ 18%] Linking C static library libtinyexpr.a -cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastp.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastp.sh.h.tmp +make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse3' cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/easyrbh.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/easyrbh.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastp.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastp.sh.h -cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 -[ 18%] Generating ../generated/blastpgp.sh.h +[ 18%] Built target tinyexpr +[ 18%] Built target cacode +[ 18%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_ioutil.cpp +[ 19%] Generating ../generated/blastp.sh.h +[ 19%] Generating ../generated/blastpgp.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastp.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastpgp.sh -/usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o -[ 19%] Generating ../generated/map.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true map.sh -/usr/bin/ranlib libtinyexpr.a cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse3' cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastp.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastp.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastpgp.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastpgp.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl map.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/map.sh.h -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse3' +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastp.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastp.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastpgp.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastpgp.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/map.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/map.sh.h.tmp -[ 19%] Built target tinyexpr +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastp.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastp.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastpgp.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastpgp.sh.h -[ 19%] Built target cacode -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/map.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/map.sh.h -[ 19%] Generating ../generated/rbh.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true rbh.sh -[ 19%] Generating ../generated/clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true clustering.sh +[ 20%] Generating ../generated/map.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true map.sh +[ 20%] Generating ../generated/rbh.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true rbh.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl map.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/map.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl clustering.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/clustering.sh.h -[ 20%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -[ 21%] Generating ../generated/linclust.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/map.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/map.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl rbh.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/rbh.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/clustering.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/map.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/map.sh.h +[ 21%] Generating ../generated/linclust.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true linclust.sh -cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/sls_alp_data.cpp cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/rbh.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/rbh.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated +make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse3' cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/rbh.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/rbh.sh.h +[ 21%] Built target ksw2 cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl linclust.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/linclust.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/linclust.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/linclust.sh.h.tmp +[ 21%] Generating ../generated/clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true clustering.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl clustering.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/clustering.sh.h [ 21%] Generating ../generated/cascaded_clustering.sh.h -[ 21%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/mmseqs2-12-113e3+ds/lib/alp/njn_ioutil.cpp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/linclust.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/linclust.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true cascaded_clustering.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/clustering.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/linclust.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/linclust.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated [ 22%] Generating ../generated/update_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true update_clustering.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/cascaded_clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl update_clustering.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/update_clustering.sh.h [ 22%] Generating ../generated/searchtargetprofile.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true searchtargetprofile.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/cascaded_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/cascaded_clustering.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/cascaded_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/cascaded_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/update_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/update_clustering.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true searchtargetprofile.sh [ 23%] Generating ../generated/createindex.sh.h +[ 23%] Generating ../generated/createtaxdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true createindex.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/searchtargetprofile.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true createtaxdb.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/cascaded_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/cascaded_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/update_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/update_clustering.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/searchtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/searchtargetprofile.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl createindex.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/createindex.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/searchtargetprofile.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/searchtargetprofile.sh.h -[ 23%] Generating ../generated/createtaxdb.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true createtaxdb.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/createindex.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/createindex.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/createindex.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/createindex.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/searchtargetprofile.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl createindex.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/createindex.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl createtaxdb.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/createtaxdb.sh.h -make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse3' -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/createtaxdb.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/createtaxdb.sh.h.tmp -[ 24%] Built target ksw2 +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/createindex.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/createindex.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/searchtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/searchtargetprofile.sh.h.tmp [ 24%] Generating ../generated/translated_search.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true translated_search.sh [ 24%] Generating ../generated/taxonomy.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/createtaxdb.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/createtaxdb.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true translated_search.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true taxonomy.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/createindex.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/createindex.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/searchtargetprofile.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/searchtargetprofile.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/createtaxdb.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/createtaxdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl translated_search.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/translated_search.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl taxonomy.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/taxonomy.sh.h -[ 25%] Generating ../generated/taxpercontig.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true taxpercontig.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/translated_search.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/translated_search.sh.h.tmp -[ 25%] Generating ../generated/blastn.sh.h -[ 26%] Generating ../generated/enrich.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/taxonomy.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/taxonomy.sh.h.tmp -[ 27%] Generating ../generated/searchslicedtargetprofile.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastn.sh -[ 27%] Generating ../generated/multihitsearch.sh.h -[ 27%] Generating ../generated/multihitdb.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true enrich.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated +[ 25%] Generating ../generated/taxpercontig.sh.h +[ 25%] Generating ../generated/multihitdb.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true taxpercontig.sh +[ 25%] Generating ../generated/multihitsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true multihitdb.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true multihitsearch.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh +[ 26%] Generating ../generated/enrich.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/translated_search.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/translated_search.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/taxonomy.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/taxonomy.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true enrich.sh cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl taxpercontig.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/taxpercontig.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastn.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastn.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl enrich.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/enrich.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/taxpercontig.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/taxpercontig.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl taxpercontig.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/taxpercontig.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl multihitdb.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/multihitdb.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl multihitsearch.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/multihitsearch.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/searchslicedtargetprofile.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastn.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastn.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/enrich.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/enrich.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/taxpercontig.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/taxpercontig.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl enrich.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/enrich.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/taxpercontig.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/taxpercontig.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/multihitdb.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/multihitdb.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/multihitsearch.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/multihitsearch.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastn.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastn.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/searchslicedtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/searchslicedtargetprofile.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/enrich.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/enrich.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/multihitsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/multihitsearch.sh.h +[ 26%] Generating ../generated/blastn.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/enrich.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/enrich.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true blastn.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/taxpercontig.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/taxpercontig.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/multihitdb.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/multihitdb.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/searchslicedtargetprofile.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/searchslicedtargetprofile.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/multihitsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/multihitsearch.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/enrich.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/enrich.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl blastn.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastn.sh.h +[ 27%] Generating ../generated/searchslicedtargetprofile.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated [ 27%] Generating ../generated/linsearch.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastn.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastn.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true linsearch.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated -[ 27%] Generating ../generated/nucleotide_clustering.sh.h [ 28%] Generating ../generated/databases.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true nucleotide_clustering.sh -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl linsearch.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/linsearch.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true databases.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/searchslicedtargetprofile.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastn.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/blastn.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl linsearch.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/linsearch.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/searchslicedtargetprofile.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/searchslicedtargetprofile.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl databases.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/databases.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/searchslicedtargetprofile.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/searchslicedtargetprofile.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/linsearch.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/linsearch.sh.h.tmp +[ 28%] Generating ../generated/nucleotide_clustering.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/databases.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/databases.sh.h.tmp +cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/checkshell.sh true nucleotide_clustering.sh +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/linsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/linsearch.sh.h +cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/databases.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/databases.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && mkdir -p /build/mmseqs2-12-113e3+ds/build_sse3/generated cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/nucleotide_clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/linsearch.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/linsearch.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /build/mmseqs2-12-113e3+ds/cmake/xxdi.pl databases.sh > /build/mmseqs2-12-113e3+ds/build_sse3/generated/databases.sh.h cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/nucleotide_clustering.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/nucleotide_clustering.sh.h.tmp cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/nucleotide_clustering.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/nucleotide_clustering.sh.h -cd /build/mmseqs2-12-113e3+ds/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /build/mmseqs2-12-113e3+ds/build_sse3/generated/databases.sh.h > /build/mmseqs2-12-113e3+ds/build_sse3/generated/databases.sh.h.tmp -cd /build/mmseqs2-12-113e3+ds/data/workflow && mv -f /build/mmseqs2-12-113e3+ds/build_sse3/generated/databases.sh.h.tmp /build/mmseqs2-12-113e3+ds/build_sse3/generated/databases.sh.h make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse3' [ 28%] Built target generated make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse3' @@ -4145,37 +4180,37 @@ make[4]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse3' make -f src/CMakeFiles/mmseqs-framework.dir/build.make src/CMakeFiles/mmseqs-framework.dir/build make[4]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse3' -[ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o -[ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o -[ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o -[ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o -[ 31%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o -[ 31%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o +[ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o +[ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o +[ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o +[ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.cpp +[ 31%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o [ 31%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/PSSMCalculator.cpp.o -[ 32%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/BandedNucleotideAligner.cpp.o +[ 31%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o [ 32%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/StripedSmithWaterman.cpp.o -cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/Alignment.cpp cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/CompressedA3M.cpp -cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/Matcher.cpp -[ 32%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o -[ 33%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/rescorediagonal.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/Main.cpp +cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/Matcher.cpp cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 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-fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/MsaFilter.cpp cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/MultipleAlignment.cpp cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/PSSMCalculator.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/PSSMCalculator.cpp +[ 32%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/BandedNucleotideAligner.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/StripedSmithWaterman.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/StripedSmithWaterman.cpp cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib 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CMakeFiles/mmseqs-framework.dir/alignment/BandedNucleotideAligner.cpp.o -c /build/mmseqs2-12-113e3+ds/src/alignment/BandedNucleotideAligner.cpp -cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering 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-I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/Main.cpp [ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o +cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde 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CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o -c /build/mmseqs2-12-113e3+ds/src/clustering/AlignmentSymmetry.cpp cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust 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/build/mmseqs2-12-113e3+ds/src/clustering/Clustering.cpp [ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering 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-I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/Application.cpp [ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/BaseMatrix.cpp @@ -4204,8 +4239,8 @@ [ 41%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MemoryTracker.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/MemoryTracker.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/MemoryTracker.cpp [ 42%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o -[ 42%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MultiParam.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/MMseqsMPI.cpp +[ 42%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MultiParam.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/MultiParam.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/MultiParam.cpp [ 42%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/NucleotideMatrix.cpp.o cd /build/mmseqs2-12-113e3+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/mmseqs2-12-113e3+ds/lib/tinyexpr -I/build/mmseqs2-12-113e3+ds/lib/microtar -I/build/mmseqs2-12-113e3+ds/lib/simde -I/build/mmseqs2-12-113e3+ds/lib -I/build/mmseqs2-12-113e3+ds/lib/simd -I/build/mmseqs2-12-113e3+ds/lib/alp -I/build/mmseqs2-12-113e3+ds/lib/cacode -I/build/mmseqs2-12-113e3+ds/lib/ksw2 -I/build/mmseqs2-12-113e3+ds/lib/xxhash -I/build/mmseqs2-12-113e3+ds/lib/ips4o -I/build/mmseqs2-12-113e3+ds/build_sse3/generated -I/build/mmseqs2-12-113e3+ds/src/alignment -I/build/mmseqs2-12-113e3+ds/src/clustering -I/build/mmseqs2-12-113e3+ds/src/commons -I/build/mmseqs2-12-113e3+ds/src/multihit -I/build/mmseqs2-12-113e3+ds/src/prefiltering -I/build/mmseqs2-12-113e3+ds/src/linclust -I/build/mmseqs2-12-113e3+ds/src/taxonomy -I/build/mmseqs2-12-113e3+ds/src/util -I/build/mmseqs2-12-113e3+ds/src/. -g -O2 -fdebug-prefix-map=/build/mmseqs2-12-113e3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/NucleotideMatrix.cpp.o -c /build/mmseqs2-12-113e3+ds/src/commons/NucleotideMatrix.cpp @@ -4496,7 +4531,7 @@ make[1]: Entering directory '/build/mmseqs2-12-113e3+ds' dh_install -pmmseqs2 debian/bin/simd-dispatch /usr/lib/mmseqs2/ dh_auto_install --builddirectory build_avx2 && dh_auto_install --builddirectory build_avx && dh_auto_install --builddirectory build_sse4.1 && dh_auto_install --builddirectory build_ssse3 && dh_auto_install --builddirectory build_sse3 && true - cd build_avx2 && make -j16 install DESTDIR=/build/mmseqs2-12-113e3\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd build_avx2 && make -j15 install DESTDIR=/build/mmseqs2-12-113e3\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/mmseqs2-12-113e3+ds/build_avx2' /usr/bin/cmake -S/build/mmseqs2-12-113e3+ds -B/build/mmseqs2-12-113e3+ds/build_avx2 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -4508,7 +4543,7 @@ -- Install configuration: "None" -- Installing: /build/mmseqs2-12-113e3+ds/debian/tmp/usr/bin/mmseqs-avx2 make[2]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_avx2' - cd build_avx && make -j16 install DESTDIR=/build/mmseqs2-12-113e3\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd build_avx && make -j15 install DESTDIR=/build/mmseqs2-12-113e3\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/mmseqs2-12-113e3+ds/build_avx' /usr/bin/cmake -S/build/mmseqs2-12-113e3+ds -B/build/mmseqs2-12-113e3+ds/build_avx --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -4520,7 +4555,7 @@ -- Install configuration: "None" -- Installing: /build/mmseqs2-12-113e3+ds/debian/tmp/usr/bin/mmseqs-avx make[2]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_avx' - cd build_sse4.1 && make -j16 install DESTDIR=/build/mmseqs2-12-113e3\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd build_sse4.1 && make -j15 install DESTDIR=/build/mmseqs2-12-113e3\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' /usr/bin/cmake -S/build/mmseqs2-12-113e3+ds -B/build/mmseqs2-12-113e3+ds/build_sse4.1 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -4532,7 +4567,7 @@ -- Install configuration: "None" -- Installing: /build/mmseqs2-12-113e3+ds/debian/tmp/usr/bin/mmseqs-sse4.1 make[2]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_sse4.1' - cd build_ssse3 && make -j16 install DESTDIR=/build/mmseqs2-12-113e3\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd build_ssse3 && make -j15 install DESTDIR=/build/mmseqs2-12-113e3\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/mmseqs2-12-113e3+ds/build_ssse3' /usr/bin/cmake -S/build/mmseqs2-12-113e3+ds -B/build/mmseqs2-12-113e3+ds/build_ssse3 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -4544,7 +4579,7 @@ -- Install configuration: "None" -- Installing: /build/mmseqs2-12-113e3+ds/debian/tmp/usr/bin/mmseqs-ssse3 make[2]: Leaving directory '/build/mmseqs2-12-113e3+ds/build_ssse3' - cd build_sse3 && make -j16 install DESTDIR=/build/mmseqs2-12-113e3\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd build_sse3 && make -j15 install DESTDIR=/build/mmseqs2-12-113e3\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/mmseqs2-12-113e3+ds/build_sse3' /usr/bin/cmake -S/build/mmseqs2-12-113e3+ds -B/build/mmseqs2-12-113e3+ds/build_sse3 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -4602,9 +4637,9 @@ make[1]: Leaving directory '/build/mmseqs2-12-113e3+ds' dh_md5sums dh_builddeb -dpkg-deb: building package 'mmseqs2-dbgsym' in '../mmseqs2-dbgsym_12-113e3+ds-3_amd64.deb'. -dpkg-deb: building package 'mmseqs2' in '../mmseqs2_12-113e3+ds-3_amd64.deb'. dpkg-deb: building package 'mmseqs2-examples' in '../mmseqs2-examples_12-113e3+ds-3_all.deb'. +dpkg-deb: building package 'mmseqs2' in '../mmseqs2_12-113e3+ds-3_amd64.deb'. +dpkg-deb: building package 'mmseqs2-dbgsym' in '../mmseqs2-dbgsym_12-113e3+ds-3_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../mmseqs2_12-113e3+ds-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -4612,12 +4647,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/725185/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/725185/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/576571 and its subdirectories -I: Current time: Wed Feb 22 21:15:06 -12 2023 -I: pbuilder-time-stamp: 1677143706 +I: removing directory /srv/workspace/pbuilder/725185 and its subdirectories +I: Current time: Fri Jan 21 17:14:03 +14 2022 +I: pbuilder-time-stamp: 1642734843