Diff of the two buildlogs: -- --- b1/build.log 2021-12-30 23:40:51.897385094 +0000 +++ b2/build.log 2021-12-30 23:44:34.210438061 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Dec 30 11:34:09 -12 2021 -I: pbuilder-time-stamp: 1640907249 +I: Current time: Thu Feb 2 20:03:55 +14 2023 +I: pbuilder-time-stamp: 1675317835 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -16,8 +16,8 @@ I: copying [./pftools_3.2.6-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.ZfBmp6jF/trustedkeys.kbx': General error -gpgv: Signature made Thu Dec 17 20:57:23 2020 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.4ODY2YCZ/trustedkeys.kbx': General error +gpgv: Signature made Fri Dec 18 22:57:23 2020 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -32,135 +32,169 @@ dpkg-source: info: applying destdir_for_examples.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3142527/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2355030/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2355030/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2355030/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=15' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=16' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='4f72df9c841e452f887781948fbcbbd7' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3142527' - PS1='# ' - PS2='> ' + INVOCATION_ID=617a656780ae44f8a2c7bac27b4d9549 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2355030 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.P0DKRlJY5o/pbuilderrc_fqE2 --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.P0DKRlJY5o/b1 --logfile b1/build.log pftools_3.2.6-1.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://78.137.99.97:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.P0DKRlJY5o/pbuilderrc_emR2 --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.P0DKRlJY5o/b2 --logfile b2/build.log pftools_3.2.6-1.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://85.184.249.68:3128 I: uname -a - Linux ionos11-amd64 5.10.0-10-amd64 #1 SMP Debian 5.10.84-1 (2021-12-08) x86_64 GNU/Linux + Linux i-capture-the-hostname 5.14.0-0.bpo.2-amd64 #1 SMP Debian 5.14.9-2~bpo11+1 (2021-10-10) x86_64 GNU/Linux I: ls -l /bin total 5476 - -rwxr-xr-x 1 root root 1234376 Aug 4 08:25 bash - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat - -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp - -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod - -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown - -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp - -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash - -rwxr-xr-x 1 root root 113664 Sep 23 2020 date - -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd - -rwxr-xr-x 1 root root 93936 Sep 23 2020 df - -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir - -rwxr-xr-x 1 root root 84440 Jul 28 07:09 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 39680 Sep 23 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 69032 Jul 28 07:09 findmnt - -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount - -rwxr-xr-x 1 root root 203072 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe - -rwxr-xr-x 1 root root 98048 Mar 2 2021 gzip - -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln - -rwxr-xr-x 1 root root 56952 Feb 7 2020 login - -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls - -rwxr-xr-x 1 root root 149736 Jul 28 07:09 lsblk - -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir - -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod - -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp - -rwxr-xr-x 1 root root 59632 Jul 28 07:09 more - -rwsr-xr-x 1 root root 55528 Jul 28 07:09 mount - -rwxr-xr-x 1 root root 18664 Jul 28 07:09 mountpoint - -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd - lrwxrwxrwx 1 root root 4 Aug 4 08:25 rbash -> bash - -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink - -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm - -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir - -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Dec 20 21:24 sh -> dash - -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep - -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty - -rwsr-xr-x 1 root root 71912 Jul 28 07:09 su - -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync - -rwxr-xr-x 1 root root 531928 Feb 16 2021 tar - -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch - -rwxr-xr-x 1 root root 39680 Sep 23 2020 true - -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server - -rwsr-xr-x 1 root root 35040 Jul 28 07:09 umount - -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress - -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir - -rwxr-xr-x 1 root root 63744 Jul 28 07:09 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless - -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew -I: user script /srv/workspace/pbuilder/3142527/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1234376 Aug 5 2021 bash + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 18424 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 43936 Sep 24 2020 cat + -rwxr-xr-x 1 root root 72672 Sep 24 2020 chgrp + -rwxr-xr-x 1 root root 64448 Sep 24 2020 chmod + -rwxr-xr-x 1 root root 72672 Sep 24 2020 chown + -rwxr-xr-x 1 root root 151168 Sep 24 2020 cp + -rwxr-xr-x 1 root root 125560 Dec 11 2020 dash + -rwxr-xr-x 1 root root 113664 Sep 24 2020 date + -rwxr-xr-x 1 root root 80968 Sep 24 2020 dd + -rwxr-xr-x 1 root root 93936 Sep 24 2020 df + -rwxr-xr-x 1 root root 147176 Sep 24 2020 dir + -rwxr-xr-x 1 root root 84440 Jul 29 2021 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 39712 Sep 24 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 39680 Sep 24 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 69032 Jul 29 2021 findmnt + -rwsr-xr-x 1 root root 34896 Feb 27 2021 fusermount + -rwxr-xr-x 1 root root 203072 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 2021 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 2021 gzexe + -rwxr-xr-x 1 root root 98048 Mar 3 2021 gzip + -rwxr-xr-x 1 root root 22600 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 72840 Sep 24 2020 ln + -rwxr-xr-x 1 root root 56952 Feb 8 2020 login + -rwxr-xr-x 1 root root 147176 Sep 24 2020 ls + -rwxr-xr-x 1 root root 149736 Jul 29 2021 lsblk + -rwxr-xr-x 1 root root 85184 Sep 24 2020 mkdir + -rwxr-xr-x 1 root root 76896 Sep 24 2020 mknod + -rwxr-xr-x 1 root root 48064 Sep 24 2020 mktemp + -rwxr-xr-x 1 root root 59632 Jul 29 2021 more + -rwsr-xr-x 1 root root 55528 Jul 29 2021 mount + -rwxr-xr-x 1 root root 18664 Jul 29 2021 mountpoint + -rwxr-xr-x 1 root root 147080 Sep 24 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 2021 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 43872 Sep 24 2020 pwd + lrwxrwxrwx 1 root root 4 Aug 5 2021 rbash -> bash + -rwxr-xr-x 1 root root 52032 Sep 24 2020 readlink + -rwxr-xr-x 1 root root 72704 Sep 24 2020 rm + -rwxr-xr-x 1 root root 52032 Sep 24 2020 rmdir + -rwxr-xr-x 1 root root 27472 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Feb 2 20:04 sh -> bash + lrwxrwxrwx 1 root root 4 Jan 24 05:47 sh.distrib -> dash + -rwxr-xr-x 1 root root 43808 Sep 24 2020 sleep + -rwxr-xr-x 1 root root 84928 Sep 24 2020 stty + -rwsr-xr-x 1 root root 71912 Jul 29 2021 su + -rwxr-xr-x 1 root root 39744 Sep 24 2020 sync + -rwxr-xr-x 1 root root 531928 Feb 17 2021 tar + -rwxr-xr-x 1 root root 14456 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 101408 Sep 24 2020 touch + -rwxr-xr-x 1 root root 39680 Sep 24 2020 true + -rwxr-xr-x 1 root root 14328 Feb 27 2021 ulockmgr_server + -rwsr-xr-x 1 root root 35040 Jul 29 2021 umount + -rwxr-xr-x 1 root root 39744 Sep 24 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 2021 uncompress + -rwxr-xr-x 1 root root 147176 Sep 24 2020 vdir + -rwxr-xr-x 1 root root 63744 Jul 29 2021 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 2021 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 2021 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 2021 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 2021 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 2021 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 2021 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 2021 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 2021 zless + -rwxr-xr-x 1 root root 1842 Mar 3 2021 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 2021 znew +I: user script /srv/workspace/pbuilder/2355030/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -275,7 +309,7 @@ Get: 63 http://deb.debian.org/debian bullseye/main amd64 libpcre3-dev amd64 2:8.39-13 [650 kB] Get: 64 http://deb.debian.org/debian bullseye/main amd64 libreadline-dev amd64 8.1-1 [148 kB] Get: 65 http://deb.debian.org/debian bullseye/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2 [190 kB] -Fetched 41.7 MB in 1s (62.3 MB/s) +Fetched 41.7 MB in 0s (90.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19655 files and directories currently installed.) @@ -553,7 +587,8 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/pftools-3.2.6/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pftools_3.2.6-1_source.changes +hostname: Name or service not known +I: Running cd /build/pftools-3.2.6/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../pftools_3.2.6-1_source.changes dpkg-buildpackage: info: source package pftools dpkg-buildpackage: info: source version 3.2.6-1 dpkg-buildpackage: info: source distribution unstable @@ -689,7 +724,7 @@ -- Build files have been written to: /build/pftools-3.2.6/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/pftools-3.2.6' dh_auto_build - cd obj-x86_64-linux-gnu && make -j15 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j16 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/pftools-3.2.6 -B/build/pftools-3.2.6/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 Re-run cmake, missing byproduct: Tests/examples/test_V2.sh.tmp @@ -758,222 +793,207 @@ make[2]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/C/CMakeFiles/REGEXP.dir/build.make src/C/CMakeFiles/REGEXP.dir/depend make -f src/C/utils/CMakeFiles/OUTPUT_FORMAT.dir/build.make src/C/utils/CMakeFiles/OUTPUT_FORMAT.dir/depend +make -f src/C/sse2/CMakeFiles/SSE2.dir/build.make src/C/sse2/CMakeFiles/SSE2.dir/depend +make -f src/C/sse41/CMakeFiles/SSE41.dir/build.make src/C/sse41/CMakeFiles/SSE41.dir/depend +make -f src/C/utils/CMakeFiles/PROFILES.dir/build.make src/C/utils/CMakeFiles/PROFILES.dir/depend make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/C /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/REGEXP.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/C/utils /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/OUTPUT_FORMAT.dir/DependInfo.cmake --color= -make -f src/C/sse2/CMakeFiles/SSE2.dir/build.make src/C/sse2/CMakeFiles/SSE2.dir/depend -make -f src/C/sse41/CMakeFiles/SSE41.dir/build.make src/C/sse41/CMakeFiles/SSE41.dir/depend -make -f src/C/utils/CMakeFiles/PROFILES.dir/build.make src/C/utils/CMakeFiles/PROFILES.dir/depend make -f src/C/utils/CMakeFiles/SYSTEM.dir/build.make src/C/utils/CMakeFiles/SYSTEM.dir/depend +make -f src/C/utils/CMakeFiles/SEQUENCES.dir/build.make src/C/utils/CMakeFiles/SEQUENCES.dir/depend +make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' +cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/C/sse2 /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse2 /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse2/CMakeFiles/SSE2.dir/DependInfo.cmake --color= +make -f src/C/CMakeFiles/pfpam.dir/build.make src/C/CMakeFiles/pfpam.dir/depend make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/C/sse41 /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse41 /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse41/CMakeFiles/SSE41.dir/DependInfo.cmake --color= +make -f src/Fortran/CMakeFiles/quantile.dir/build.make src/Fortran/CMakeFiles/quantile.dir/depend +make -f src/C/utils/CMakeFiles/SEQUENCES_EXTRA.dir/build.make src/C/utils/CMakeFiles/SEQUENCES_EXTRA.dir/depend make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/C/sse2 /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse2 /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse2/CMakeFiles/SSE2.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/C/utils /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/PROFILES.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/C/utils /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/SYSTEM.dir/DependInfo.cmake --color= -make -f src/C/utils/CMakeFiles/SEQUENCES.dir/build.make src/C/utils/CMakeFiles/SEQUENCES.dir/depend -Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse41/CMakeFiles/SSE41.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse41/CMakeFiles/SSE41.dir/depend.internal". -Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse41/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse41/CMakeFiles/SSE41.dir/depend.internal". -Scanning dependencies of target SSE41 make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/C/utils /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/SEQUENCES.dir/DependInfo.cmake --color= -make -f src/C/CMakeFiles/pfpam.dir/build.make src/C/CMakeFiles/pfpam.dir/depend -Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse2/CMakeFiles/SSE2.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse2/CMakeFiles/SSE2.dir/depend.internal". -Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse2/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse2/CMakeFiles/SSE2.dir/depend.internal". make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/C /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfpam.dir/DependInfo.cmake --color= -Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/PROFILES.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/PROFILES.dir/depend.internal". -Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/PROFILES.dir/depend.internal". -make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -Scanning dependencies of target SSE2 -make -f src/C/sse41/CMakeFiles/SSE41.dir/build.make src/C/sse41/CMakeFiles/SSE41.dir/build -Scanning dependencies of target PROFILES -make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' +cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/quantile.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' +cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/C/utils /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/SEQUENCES_EXTRA.dir/DependInfo.cmake --color= +make -f src/C/CMakeFiles/pfsplit.dir/build.make src/C/CMakeFiles/pfsplit.dir/depend +make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' +cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/C /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfsplit.dir/DependInfo.cmake --color= Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/OUTPUT_FORMAT.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/OUTPUT_FORMAT.dir/depend.internal". Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/OUTPUT_FORMAT.dir/depend.internal". -make -f src/C/sse2/CMakeFiles/SSE2.dir/build.make src/C/sse2/CMakeFiles/SSE2.dir/build -Scanning dependencies of target OUTPUT_FORMAT +Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse2/CMakeFiles/SSE2.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse2/CMakeFiles/SSE2.dir/depend.internal". +Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse2/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse2/CMakeFiles/SSE2.dir/depend.internal". Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfpam.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfpam.dir/depend.internal". Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfpam.dir/depend.internal". -make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -make -f src/C/utils/CMakeFiles/PROFILES.dir/build.make src/C/utils/CMakeFiles/PROFILES.dir/build -make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -Scanning dependencies of target pfpam +make -f src/Fortran/CMakeFiles/gtop.dir/build.make src/Fortran/CMakeFiles/gtop.dir/depend +Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse41/CMakeFiles/SSE41.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse41/CMakeFiles/SSE41.dir/depend.internal". +Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse41/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse41/CMakeFiles/SSE41.dir/depend.internal". 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Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/SEQUENCES.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/SEQUENCES.dir/depend.internal". +Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/SYSTEM.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/SYSTEM.dir/depend.internal". Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/SEQUENCES.dir/depend.internal". +Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/SYSTEM.dir/depend.internal". +Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/PROFILES.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/PROFILES.dir/depend.internal". +Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/PROFILES.dir/depend.internal". +Scanning dependencies of target OUTPUT_FORMAT +Scanning dependencies of target quantile +Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/SEQUENCES_EXTRA.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/SEQUENCES_EXTRA.dir/depend.internal". +Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/SEQUENCES_EXTRA.dir/depend.internal". Scanning dependencies of target SEQUENCES Scanning dependencies of target REGEXP -Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/SYSTEM.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/SYSTEM.dir/depend.internal". -Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/SYSTEM.dir/depend.internal". -make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' Scanning dependencies of target SYSTEM +Scanning dependencies of target SSE2 +Scanning dependencies of target pfpam +Scanning dependencies of target SSE41 +Scanning dependencies of target SEQUENCES_EXTRA +Scanning dependencies of target PROFILES make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -make -f src/C/utils/CMakeFiles/OUTPUT_FORMAT.dir/build.make src/C/utils/CMakeFiles/OUTPUT_FORMAT.dir/build make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' +make -f src/Fortran/CMakeFiles/ptoh.dir/build.make src/Fortran/CMakeFiles/ptoh.dir/depend +make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' +cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/gtop.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/C/CMakeFiles/REGEXP.dir/build.make src/C/CMakeFiles/REGEXP.dir/build -[ 1%] Building C object src/C/sse2/CMakeFiles/SSE2.dir/heuristic_sse2.c.o -[ 2%] Building C object src/C/sse41/CMakeFiles/SSE41.dir/xali1_sse41.c.o -cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse2 && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -I /build/pftools-3.2.6/src/C/include/ -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -msse2 -o CMakeFiles/SSE2.dir/heuristic_sse2.c.o -c /build/pftools-3.2.6/src/C/sse2/heuristic_sse2.c -cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse41 && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -I /build/pftools-3.2.6/src/C/include/ -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -msse4.1 -o CMakeFiles/SSE41.dir/xali1_sse41.c.o -c /build/pftools-3.2.6/src/C/sse41/xali1_sse41.c -[ 4%] Building C object src/C/utils/CMakeFiles/PROFILES.dir/io.c.o +make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' +make -f src/C/utils/CMakeFiles/OUTPUT_FORMAT.dir/build.make src/C/utils/CMakeFiles/OUTPUT_FORMAT.dir/build +make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' +make -f src/C/sse2/CMakeFiles/SSE2.dir/build.make src/C/sse2/CMakeFiles/SSE2.dir/build +make -f src/C/sse41/CMakeFiles/SSE41.dir/build.make src/C/sse41/CMakeFiles/SSE41.dir/build +make -f src/C/utils/CMakeFiles/PROFILES.dir/build.make src/C/utils/CMakeFiles/PROFILES.dir/build +make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' +cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/ptoh.dir/DependInfo.cmake --color= make -f src/C/utils/CMakeFiles/SYSTEM.dir/build.make src/C/utils/CMakeFiles/SYSTEM.dir/build make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -make -f src/C/utils/CMakeFiles/SEQUENCES.dir/build.make src/C/utils/CMakeFiles/SEQUENCES.dir/build -cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/PROFILES.dir/io.c.o -c /build/pftools-3.2.6/src/C/utils/io.c -[ 5%] Building C object src/C/sse41/CMakeFiles/SSE41.dir/xalip_sse41.c.o -[ 7%] Building C object src/C/sse41/CMakeFiles/SSE41.dir/heuristic_sse41.c.o -[ 8%] Building C object src/C/utils/CMakeFiles/PROFILES.dir/profile.c.o -make -f src/C/CMakeFiles/pfpam.dir/build.make src/C/CMakeFiles/pfpam.dir/build make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse41 && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -I /build/pftools-3.2.6/src/C/include/ -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -msse4.1 -o CMakeFiles/SSE41.dir/xalip_sse41.c.o -c /build/pftools-3.2.6/src/C/sse41/xalip_sse41.c -[ 10%] Building C object src/C/sse41/CMakeFiles/SSE41.dir/xalit_sse41.c.o -cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/PROFILES.dir/profile.c.o -c /build/pftools-3.2.6/src/C/utils/profile.c -[ 11%] Building C object src/C/sse2/CMakeFiles/SSE2.dir/xali1_sse2.c.o -[ 14%] Building C object src/C/utils/CMakeFiles/OUTPUT_FORMAT.dir/output.c.o -[ 14%] Building C object src/C/sse2/CMakeFiles/SSE2.dir/xalip_sse2.c.o -cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse41 && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -I /build/pftools-3.2.6/src/C/include/ -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -msse4.1 -o CMakeFiles/SSE41.dir/heuristic_sse41.c.o -c /build/pftools-3.2.6/src/C/sse41/heuristic_sse41.c -cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse2 && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -I /build/pftools-3.2.6/src/C/include/ -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -msse2 -o CMakeFiles/SSE2.dir/xali1_sse2.c.o -c /build/pftools-3.2.6/src/C/sse2/xali1_sse2.c -[ 16%] Building C object src/C/CMakeFiles/REGEXP.dir/utils/pfregexp.c.o make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -cd 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"/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfsplit.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfsplit.dir/depend.internal". +Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfsplit.dir/depend.internal". +Scanning dependencies of target pfsplit +Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/gtop.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/gtop.dir/depend.internal". +Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/gtop.dir/depend.internal". +[ 1%] Building C object src/C/utils/CMakeFiles/OUTPUT_FORMAT.dir/output.c.o +make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' +[ 2%] Building C object src/C/CMakeFiles/REGEXP.dir/utils/pfregexp.c.o +[ 5%] Building C object src/C/utils/CMakeFiles/PROFILES.dir/io.c.o +[ 5%] Building C object src/C/sse2/CMakeFiles/SSE2.dir/heuristic_sse2.c.o +[ 7%] Building C object src/C/utils/CMakeFiles/SYSTEM.dir/system.c.o +make -f src/C/CMakeFiles/pfpam.dir/build.make src/C/CMakeFiles/pfpam.dir/build cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/OUTPUT_FORMAT.dir/output.c.o -c /build/pftools-3.2.6/src/C/utils/output.c cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -I/usr/include -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/REGEXP.dir/utils/pfregexp.c.o -c /build/pftools-3.2.6/src/C/utils/pfregexp.c -cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse41 && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -I /build/pftools-3.2.6/src/C/include/ -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -msse4.1 -o CMakeFiles/SSE41.dir/xalit_sse41.c.o -c /build/pftools-3.2.6/src/C/sse41/xalit_sse41.c -[ 17%] Building C object src/C/utils/CMakeFiles/PROFILES.dir/Normalization.c.o -[ 19%] Building C object src/C/utils/CMakeFiles/SYSTEM.dir/system.c.o -cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/PROFILES.dir/Normalization.c.o -c /build/pftools-3.2.6/src/C/utils/Normalization.c +[ 8%] Building C object src/C/sse2/CMakeFiles/SSE2.dir/xali1_sse2.c.o +[ 10%] Building C object src/C/sse41/CMakeFiles/SSE41.dir/heuristic_sse41.c.o +Scanning dependencies of target gtop +cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/PROFILES.dir/io.c.o -c /build/pftools-3.2.6/src/C/utils/io.c +Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/ptoh.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/ptoh.dir/depend.internal". +Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/ptoh.dir/depend.internal". cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/SYSTEM.dir/system.c.o -c /build/pftools-3.2.6/src/C/utils/system.c -[ 20%] Building C object src/C/utils/CMakeFiles/SEQUENCES.dir/ReadSequence.c.o -cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/SEQUENCES.dir/ReadSequence.c.o -c /build/pftools-3.2.6/src/C/utils/ReadSequence.c -[ 22%] Building C object src/C/CMakeFiles/pfpam.dir/utils/pam.c.o -cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -D_PFPAM -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/pfpam.dir/utils/pam.c.o -c /build/pftools-3.2.6/src/C/utils/pam.c -[ 23%] Building C object src/C/sse2/CMakeFiles/SSE2.dir/xalit_sse2.c.o -cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse2 && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -I /build/pftools-3.2.6/src/C/include/ -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -msse2 -o CMakeFiles/SSE2.dir/xalit_sse2.c.o -c /build/pftools-3.2.6/src/C/sse2/xalit_sse2.c -[ 25%] Building C object src/C/CMakeFiles/pfpam.dir/utils/io.c.o -make -f src/Fortran/CMakeFiles/quantile.dir/build.make src/Fortran/CMakeFiles/quantile.dir/depend -cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -D_PFPAM -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/pfpam.dir/utils/io.c.o -c /build/pftools-3.2.6/src/C/utils/io.c make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/quantile.dir/DependInfo.cmake --color= -[ 26%] Building C object src/C/CMakeFiles/pfpam.dir/utils/random.c.o -cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -D_PFPAM -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/pfpam.dir/utils/random.c.o -c /build/pftools-3.2.6/src/C/utils/random.c -make -f src/C/utils/CMakeFiles/SEQUENCES_EXTRA.dir/build.make src/C/utils/CMakeFiles/SEQUENCES_EXTRA.dir/depend -make -f src/C/CMakeFiles/pfsplit.dir/build.make src/C/CMakeFiles/pfsplit.dir/depend -make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/C/utils /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/SEQUENCES_EXTRA.dir/DependInfo.cmake --color= -Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/quantile.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/quantile.dir/depend.internal". -Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/quantile.dir/depend.internal". -Scanning dependencies of target quantile -make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/C /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfsplit.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' +cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse2 && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -I /build/pftools-3.2.6/src/C/include/ -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -msse2 -o CMakeFiles/SSE2.dir/heuristic_sse2.c.o -c /build/pftools-3.2.6/src/C/sse2/heuristic_sse2.c +make -f src/Fortran/CMakeFiles/quantile.dir/build.make src/Fortran/CMakeFiles/quantile.dir/build +cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse41 && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -I /build/pftools-3.2.6/src/C/include/ -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -msse4.1 -o CMakeFiles/SSE41.dir/heuristic_sse41.c.o -c /build/pftools-3.2.6/src/C/sse41/heuristic_sse41.c make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/SEQUENCES_EXTRA.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/SEQUENCES_EXTRA.dir/depend.internal". -Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/SEQUENCES_EXTRA.dir/depend.internal". -Scanning dependencies of target SEQUENCES_EXTRA +cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse2 && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -I /build/pftools-3.2.6/src/C/include/ -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -msse2 -o CMakeFiles/SSE2.dir/xali1_sse2.c.o -c /build/pftools-3.2.6/src/C/sse2/xali1_sse2.c make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -make -f src/Fortran/CMakeFiles/quantile.dir/build.make src/Fortran/CMakeFiles/quantile.dir/build +Scanning dependencies of target ptoh make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/C/utils/CMakeFiles/SEQUENCES_EXTRA.dir/build.make src/C/utils/CMakeFiles/SEQUENCES_EXTRA.dir/build -make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfsplit.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfsplit.dir/depend.internal". -Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfsplit.dir/depend.internal". -Scanning dependencies of target pfsplit +[ 11%] Building C object src/C/sse41/CMakeFiles/SSE41.dir/xali1_sse41.c.o +[ 13%] Building C object src/C/utils/CMakeFiles/SEQUENCES.dir/ReadSequence.c.o make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -make -f src/C/CMakeFiles/pfsplit.dir/build.make src/C/CMakeFiles/pfsplit.dir/build +cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse41 && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -I /build/pftools-3.2.6/src/C/include/ -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -msse4.1 -o CMakeFiles/SSE41.dir/xali1_sse41.c.o -c /build/pftools-3.2.6/src/C/sse41/xali1_sse41.c +[ 14%] Building C object src/C/CMakeFiles/pfpam.dir/utils/pam.c.o +[ 16%] Building C object src/C/sse2/CMakeFiles/SSE2.dir/xalip_sse2.c.o +cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse2 && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -I /build/pftools-3.2.6/src/C/include/ -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -msse2 -o CMakeFiles/SSE2.dir/xalip_sse2.c.o -c /build/pftools-3.2.6/src/C/sse2/xalip_sse2.c +cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -D_PFPAM -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/pfpam.dir/utils/pam.c.o -c /build/pftools-3.2.6/src/C/utils/pam.c +cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/SEQUENCES.dir/ReadSequence.c.o -c /build/pftools-3.2.6/src/C/utils/ReadSequence.c make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -[ 26%] Built target REGEXP -make -f src/Fortran/CMakeFiles/gtop.dir/build.make src/Fortran/CMakeFiles/gtop.dir/depend +make -f src/C/CMakeFiles/pfsplit.dir/build.make src/C/CMakeFiles/pfsplit.dir/build +make -f src/Fortran/CMakeFiles/gtop.dir/build.make src/Fortran/CMakeFiles/gtop.dir/build make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/gtop.dir/DependInfo.cmake --color= -[ 28%] Building Fortran object src/Fortran/CMakeFiles/quantile.dir/rq0.f.o -cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -c /build/pftools-3.2.6/src/Fortran/rq0.f -o CMakeFiles/quantile.dir/rq0.f.o -[ 29%] Building C object src/C/utils/CMakeFiles/SEQUENCES_EXTRA.dir/pam.c.o +[ 17%] Building C object src/C/utils/CMakeFiles/SEQUENCES_EXTRA.dir/pam.c.o +[ 19%] Building Fortran object src/Fortran/CMakeFiles/quantile.dir/rq0.f.o cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/SEQUENCES_EXTRA.dir/pam.c.o -c /build/pftools-3.2.6/src/C/utils/pam.c -[ 31%] Building C object src/C/CMakeFiles/pfsplit.dir/prg/split.c.o -cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/pfsplit.dir/prg/split.c.o -c /build/pftools-3.2.6/src/C/prg/split.c -Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/gtop.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/gtop.dir/depend.internal". -Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/gtop.dir/depend.internal". -Scanning dependencies of target gtop -make -f src/Fortran/CMakeFiles/ptoh.dir/build.make src/Fortran/CMakeFiles/ptoh.dir/depend -make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/ptoh.dir/DependInfo.cmake --color= -make -f src/Fortran/CMakeFiles/gtop.dir/build.make src/Fortran/CMakeFiles/gtop.dir/build +cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -c /build/pftools-3.2.6/src/Fortran/rq0.f -o CMakeFiles/quantile.dir/rq0.f.o make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/ptoh.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/ptoh.dir/depend.internal". -Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/ptoh.dir/depend.internal". -Scanning dependencies of target ptoh -[ 32%] Building Fortran object src/Fortran/CMakeFiles/gtop.dir/gtop.f.o -make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/Fortran/CMakeFiles/ptoh.dir/build.make src/Fortran/CMakeFiles/ptoh.dir/build -cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -fno-automatic -c /build/pftools-3.2.6/src/Fortran/gtop.f -o CMakeFiles/gtop.dir/gtop.f.o make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -[ 34%] Building Fortran object src/Fortran/CMakeFiles/ptoh.dir/ptoh.f.o +[ 20%] Building C object src/C/CMakeFiles/pfsplit.dir/prg/split.c.o +cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/pfsplit.dir/prg/split.c.o -c /build/pftools-3.2.6/src/C/prg/split.c +[ 22%] Building Fortran object src/Fortran/CMakeFiles/gtop.dir/gtop.f.o +cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -fno-automatic -c /build/pftools-3.2.6/src/Fortran/gtop.f -o CMakeFiles/gtop.dir/gtop.f.o +[ 23%] Building Fortran object src/Fortran/CMakeFiles/ptoh.dir/ptoh.f.o cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -fno-automatic -c /build/pftools-3.2.6/src/Fortran/ptoh.f -o CMakeFiles/ptoh.dir/ptoh.f.o -[ 34%] Built target SEQUENCES +[ 25%] Building C object src/C/sse41/CMakeFiles/SSE41.dir/xalip_sse41.c.o +make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' +cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse41 && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -I /build/pftools-3.2.6/src/C/include/ -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -msse4.1 -o CMakeFiles/SSE41.dir/xalip_sse41.c.o -c /build/pftools-3.2.6/src/C/sse41/xalip_sse41.c +[ 26%] Building C object src/C/sse2/CMakeFiles/SSE2.dir/xalit_sse2.c.o +[ 28%] Building C object src/Fortran/CMakeFiles/gtop.dir/io.c.o +cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse2 && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -I /build/pftools-3.2.6/src/C/include/ -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -msse2 -o CMakeFiles/SSE2.dir/xalit_sse2.c.o -c /build/pftools-3.2.6/src/C/sse2/xalit_sse2.c +cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -o CMakeFiles/gtop.dir/io.c.o -c /build/pftools-3.2.6/src/Fortran/io.c +[ 28%] Built target REGEXP make -f src/Fortran/CMakeFiles/htop.dir/build.make src/Fortran/CMakeFiles/htop.dir/depend make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/htop.dir/DependInfo.cmake --color= +[ 29%] Linking C executable pfsplit +cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfsplit.dir/link.txt --verbose=1 Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/htop.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/htop.dir/depend.internal". Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/htop.dir/depend.internal". -[ 35%] Building C object src/Fortran/CMakeFiles/gtop.dir/io.c.o -cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -o CMakeFiles/gtop.dir/io.c.o -c /build/pftools-3.2.6/src/Fortran/io.c Scanning dependencies of target htop make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/Fortran/CMakeFiles/htop.dir/build.make src/Fortran/CMakeFiles/htop.dir/build -[ 37%] Linking C executable pfsplit make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfsplit.dir/link.txt --verbose=1 -[ 38%] Building Fortran object src/Fortran/CMakeFiles/htop.dir/htop.f.o -cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -fno-automatic -c /build/pftools-3.2.6/src/Fortran/htop.f -o CMakeFiles/htop.dir/htop.f.o /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -Wl,--enable-new-dtags CMakeFiles/pfsplit.dir/prg/split.c.o -o pfsplit +[ 31%] Building C object src/C/sse41/CMakeFiles/SSE41.dir/xalit_sse41.c.o +cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/sse41 && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -I /build/pftools-3.2.6/src/C/include/ -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -msse4.1 -o CMakeFiles/SSE41.dir/xalit_sse41.c.o -c /build/pftools-3.2.6/src/C/sse41/xalit_sse41.c +[ 32%] Building Fortran object src/Fortran/CMakeFiles/htop.dir/htop.f.o +cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -fno-automatic -c /build/pftools-3.2.6/src/Fortran/htop.f -o CMakeFiles/htop.dir/htop.f.o +[ 34%] Building C object src/C/CMakeFiles/pfpam.dir/utils/io.c.o +make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' +cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -D_PFPAM -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/pfpam.dir/utils/io.c.o -c /build/pftools-3.2.6/src/C/utils/io.c +make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' +[ 34%] Built target SEQUENCES_EXTRA make -f src/Fortran/CMakeFiles/2ft.dir/build.make src/Fortran/CMakeFiles/2ft.dir/depend +[ 34%] Built target SEQUENCES make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/2ft.dir/DependInfo.cmake --color= +make -f src/Fortran/CMakeFiles/pfmake.dir/build.make src/Fortran/CMakeFiles/pfmake.dir/depend +[ 34%] Built target pfsplit Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/2ft.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/2ft.dir/depend.internal". Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/2ft.dir/depend.internal". -make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' Scanning dependencies of target 2ft -make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -make -f src/Fortran/CMakeFiles/2ft.dir/build.make src/Fortran/CMakeFiles/2ft.dir/build -make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -make -f src/Fortran/CMakeFiles/pfmake.dir/build.make src/Fortran/CMakeFiles/pfmake.dir/depend -[ 38%] Built target SSE41 make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfmake.dir/DependInfo.cmake --color= -make -f src/Fortran/CMakeFiles/pfsearch.dir/build.make src/Fortran/CMakeFiles/pfsearch.dir/depend make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -[ 40%] Building Fortran object src/Fortran/CMakeFiles/2ft.dir/2ft.f.o +[ 35%] Building C object src/C/CMakeFiles/pfpam.dir/utils/random.c.o +make -f src/Fortran/CMakeFiles/2ft.dir/build.make src/Fortran/CMakeFiles/2ft.dir/build +cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -D_PFPAM -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/pfpam.dir/utils/random.c.o -c /build/pftools-3.2.6/src/C/utils/random.c make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfsearch.dir/DependInfo.cmake --color= -cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -fno-automatic -c /build/pftools-3.2.6/src/Fortran/2ft.f -o CMakeFiles/2ft.dir/2ft.f.o +[ 37%] Building C object src/C/utils/CMakeFiles/PROFILES.dir/profile.c.o +cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/PROFILES.dir/profile.c.o -c /build/pftools-3.2.6/src/C/utils/profile.c Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfmake.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfmake.dir/depend.internal". Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfmake.dir/depend.internal". -[ 40%] Built target pfsplit -Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfsearch.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfsearch.dir/depend.internal". -Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfsearch.dir/depend.internal". Scanning dependencies of target pfmake -make -f src/Fortran/CMakeFiles/pfscale.dir/build.make src/Fortran/CMakeFiles/pfscale.dir/depend -make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfscale.dir/DependInfo.cmake --color= -make -f src/Fortran/CMakeFiles/pfmake.dir/build.make src/Fortran/CMakeFiles/pfmake.dir/build -Scanning dependencies of target pfsearch +[ 38%] Building Fortran object src/Fortran/CMakeFiles/2ft.dir/2ft.f.o +cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -fno-automatic -c /build/pftools-3.2.6/src/Fortran/2ft.f -o CMakeFiles/2ft.dir/2ft.f.o make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -make -f src/Fortran/CMakeFiles/pfsearch.dir/build.make src/Fortran/CMakeFiles/pfsearch.dir/build rhmmer2.f:265:17: Warning: Array reference at (1) out of bounds (47 > 46) in loop beginning at (2) @@ -986,126 +1006,146 @@ rhmmer2.f:274:29: Warning: Array reference at (1) out of bounds (47 > 27) in loop beginning at (2) +make -f src/Fortran/CMakeFiles/pfmake.dir/build.make src/Fortran/CMakeFiles/pfmake.dir/build make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -make -f src/Fortran/CMakeFiles/ptof.dir/build.make src/Fortran/CMakeFiles/ptof.dir/depend +[ 40%] Building Fortran object src/Fortran/CMakeFiles/pfmake.dir/pfmake.f.o +cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -fno-automatic -c /build/pftools-3.2.6/src/Fortran/pfmake.f -o CMakeFiles/pfmake.dir/pfmake.f.o +[ 41%] Building C object src/C/utils/CMakeFiles/PROFILES.dir/Normalization.c.o +cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/PROFILES.dir/Normalization.c.o -c /build/pftools-3.2.6/src/C/utils/Normalization.c +make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' +make -f src/Fortran/CMakeFiles/pfsearch.dir/build.make src/Fortran/CMakeFiles/pfsearch.dir/depend make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/ptof.dir/DependInfo.cmake --color= +cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfsearch.dir/DependInfo.cmake --color= +[ 41%] Built target OUTPUT_FORMAT +make -f src/Fortran/CMakeFiles/pfscale.dir/build.make src/Fortran/CMakeFiles/pfscale.dir/depend +[ 41%] Built target quantile +make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' +cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfscale.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' +Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfsearch.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfsearch.dir/depend.internal". +Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfsearch.dir/depend.internal". Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfscale.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfscale.dir/depend.internal". Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfscale.dir/depend.internal". +make -f src/Fortran/CMakeFiles/ptof.dir/build.make src/Fortran/CMakeFiles/ptof.dir/depend Scanning dependencies of target pfscale -Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/ptof.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/ptof.dir/depend.internal". -Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/ptof.dir/depend.internal". -[ 41%] Building Fortran object src/Fortran/CMakeFiles/pfmake.dir/pfmake.f.o -[ 43%] Building Fortran object src/Fortran/CMakeFiles/pfsearch.dir/pfsearch.f.o -make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -Scanning dependencies of target ptof -make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -make -f src/Fortran/CMakeFiles/pfscale.dir/build.make src/Fortran/CMakeFiles/pfscale.dir/build -cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -fno-automatic -c /build/pftools-3.2.6/src/Fortran/pfmake.f -o CMakeFiles/pfmake.dir/pfmake.f.o -cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -fno-automatic -c /build/pftools-3.2.6/src/Fortran/pfsearch.f -o CMakeFiles/pfsearch.dir/pfsearch.f.o make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' +cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/ptof.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -make -f src/Fortran/CMakeFiles/ptof.dir/build.make src/Fortran/CMakeFiles/ptof.dir/build -make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -[ 43%] Built target SEQUENCES_EXTRA +make -f src/Fortran/CMakeFiles/pfscale.dir/build.make src/Fortran/CMakeFiles/pfscale.dir/build +Scanning dependencies of target pfsearch +[ 41%] Built target SSE2 make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/Fortran/CMakeFiles/pfw.dir/build.make src/Fortran/CMakeFiles/pfw.dir/depend -[ 44%] Building Fortran object src/Fortran/CMakeFiles/ptof.dir/ptof.f.o -cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -fno-automatic -c /build/pftools-3.2.6/src/Fortran/ptof.f -o CMakeFiles/ptof.dir/ptof.f.o +make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfw.dir/DependInfo.cmake --color= -[ 46%] Building Fortran object src/Fortran/CMakeFiles/pfscale.dir/pfscale.f.o -cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -fno-automatic -c /build/pftools-3.2.6/src/Fortran/pfscale.f -o CMakeFiles/pfscale.dir/pfscale.f.o -[ 46%] Built target SYSTEM +make -f src/Fortran/CMakeFiles/pfsearch.dir/build.make src/Fortran/CMakeFiles/pfsearch.dir/build +make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' +[ 41%] Built target SSE41 make -f src/Fortran/CMakeFiles/6ft.dir/build.make src/Fortran/CMakeFiles/6ft.dir/depend +[ 43%] Building Fortran object src/Fortran/CMakeFiles/pfscale.dir/pfscale.f.o +cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -fno-automatic -c /build/pftools-3.2.6/src/Fortran/pfscale.f -o CMakeFiles/pfscale.dir/pfscale.f.o make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/6ft.dir/DependInfo.cmake --color= +make -f src/Fortran/CMakeFiles/psa2msa.dir/build.make src/Fortran/CMakeFiles/psa2msa.dir/depend +make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' +cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/psa2msa.dir/DependInfo.cmake --color= +Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/ptof.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/ptof.dir/depend.internal". +Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/ptof.dir/depend.internal". +Scanning dependencies of target ptof Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfw.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfw.dir/depend.internal". Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfw.dir/depend.internal". Scanning dependencies of target pfw -[ 46%] Built target SSE2 +[ 44%] Building Fortran object src/Fortran/CMakeFiles/pfsearch.dir/pfsearch.f.o make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -make -f src/Fortran/CMakeFiles/pfw.dir/build.make src/Fortran/CMakeFiles/pfw.dir/build -make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -make -f src/Fortran/CMakeFiles/psa2msa.dir/build.make src/Fortran/CMakeFiles/psa2msa.dir/depend +cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -fno-automatic -c /build/pftools-3.2.6/src/Fortran/pfsearch.f -o CMakeFiles/pfsearch.dir/pfsearch.f.o make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' +make -f src/Fortran/CMakeFiles/ptof.dir/build.make src/Fortran/CMakeFiles/ptof.dir/build +Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/psa2msa.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/psa2msa.dir/depend.internal". +Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/psa2msa.dir/depend.internal". make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/psa2msa.dir/DependInfo.cmake --color= -[ 47%] Building C object src/Fortran/CMakeFiles/pfw.dir/io.c.o -cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -o CMakeFiles/pfw.dir/io.c.o -c /build/pftools-3.2.6/src/Fortran/io.c +make -f src/Fortran/CMakeFiles/pfw.dir/build.make src/Fortran/CMakeFiles/pfw.dir/build +Scanning dependencies of target psa2msa +make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/6ft.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/6ft.dir/depend.internal". Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/6ft.dir/depend.internal". +make -f src/Fortran/CMakeFiles/psa2msa.dir/build.make src/Fortran/CMakeFiles/psa2msa.dir/build Scanning dependencies of target 6ft -make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -make -f src/Fortran/CMakeFiles/6ft.dir/build.make src/Fortran/CMakeFiles/6ft.dir/build -Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/psa2msa.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/psa2msa.dir/depend.internal". -Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/psa2msa.dir/depend.internal". -Scanning dependencies of target psa2msa make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -make -f src/Fortran/CMakeFiles/psa2msa.dir/build.make src/Fortran/CMakeFiles/psa2msa.dir/build make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -[ 47%] Built target quantile +make -f src/Fortran/CMakeFiles/6ft.dir/build.make src/Fortran/CMakeFiles/6ft.dir/build +make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' +[ 46%] Building Fortran object src/Fortran/CMakeFiles/ptof.dir/ptof.f.o +[ 47%] Building C object src/Fortran/CMakeFiles/pfw.dir/io.c.o +cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -fno-automatic -c /build/pftools-3.2.6/src/Fortran/ptof.f -o CMakeFiles/ptof.dir/ptof.f.o +[ 49%] Linking Fortran executable 2ft +cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/2ft.dir/link.txt --verbose=1 +[ 50%] Building C object src/Fortran/CMakeFiles/psa2msa.dir/io.c.o +cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -o CMakeFiles/psa2msa.dir/io.c.o -c /build/pftools-3.2.6/src/Fortran/io.c +cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -o CMakeFiles/pfw.dir/io.c.o -c /build/pftools-3.2.6/src/Fortran/io.c +[ 52%] Building Fortran object src/Fortran/CMakeFiles/6ft.dir/6ft.f.o +cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -fno-automatic -c /build/pftools-3.2.6/src/Fortran/6ft.f -o CMakeFiles/6ft.dir/6ft.f.o make -f src/Fortran/CMakeFiles/pfscan.dir/build.make src/Fortran/CMakeFiles/pfscan.dir/depend +[ 53%] Building Fortran object src/Fortran/CMakeFiles/psa2msa.dir/psa2msa.f.o +cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -fno-automatic -c /build/pftools-3.2.6/src/Fortran/psa2msa.f -o CMakeFiles/psa2msa.dir/psa2msa.f.o make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfscan.dir/DependInfo.cmake --color= -[ 49%] Building Fortran object src/Fortran/CMakeFiles/6ft.dir/6ft.f.o +/usr/bin/f95 -Wl,--enable-new-dtags -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong CMakeFiles/2ft.dir/2ft.f.o -o 2ft Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfscan.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfscan.dir/depend.internal". Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran/CMakeFiles/pfscan.dir/depend.internal". -cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -fno-automatic -c /build/pftools-3.2.6/src/Fortran/6ft.f -o CMakeFiles/6ft.dir/6ft.f.o -[ 50%] Building C object src/Fortran/CMakeFiles/psa2msa.dir/io.c.o -cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -o CMakeFiles/psa2msa.dir/io.c.o -c /build/pftools-3.2.6/src/Fortran/io.c Scanning dependencies of target pfscan +[ 55%] Building Fortran object src/Fortran/CMakeFiles/pfw.dir/pfw.f.o make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/Fortran/CMakeFiles/pfscan.dir/build.make src/Fortran/CMakeFiles/pfscan.dir/build -make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -[ 52%] Building Fortran object src/Fortran/CMakeFiles/pfw.dir/pfw.f.o cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -fno-automatic -c /build/pftools-3.2.6/src/Fortran/pfw.f -o CMakeFiles/pfw.dir/pfw.f.o -[ 53%] Building Fortran object src/Fortran/CMakeFiles/pfscan.dir/pfscan.f.o +make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' +[ 56%] Building Fortran object src/Fortran/CMakeFiles/pfscan.dir/pfscan.f.o cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -fno-automatic -c /build/pftools-3.2.6/src/Fortran/pfscan.f -o CMakeFiles/pfscan.dir/pfscan.f.o +make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' /build/pftools-3.2.6/src/Fortran/pfw.f:530:72: 530 | IF(J.GT.97.OR.J.LT.1) PAUSE | 1 Warning: Deleted feature: PAUSE statement at (1) -[ 55%] Building Fortran object src/Fortran/CMakeFiles/psa2msa.dir/psa2msa.f.o -cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/f95 -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -fno-automatic -c /build/pftools-3.2.6/src/Fortran/psa2msa.f -o CMakeFiles/psa2msa.dir/psa2msa.f.o -[ 56%] Linking Fortran executable 2ft -cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/2ft.dir/link.txt --verbose=1 -/usr/bin/f95 -Wl,--enable-new-dtags -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong CMakeFiles/2ft.dir/2ft.f.o -o 2ft -make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -[ 56%] Built target OUTPUT_FORMAT +[ 56%] Built target 2ft make -f src/C/CMakeFiles/pfindex.dir/build.make src/C/CMakeFiles/pfindex.dir/depend make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/C /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfindex.dir/DependInfo.cmake --color= +make -f src/C/utils/CMakeFiles/CALIBRATION.dir/build.make src/C/utils/CMakeFiles/CALIBRATION.dir/depend +make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' +cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/C/utils /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/CALIBRATION.dir/DependInfo.cmake --color= Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfindex.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfindex.dir/depend.internal". Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfindex.dir/depend.internal". Scanning dependencies of target pfindex +Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/CALIBRATION.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/CALIBRATION.dir/depend.internal". +Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/CALIBRATION.dir/depend.internal". make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/C/CMakeFiles/pfindex.dir/build.make src/C/CMakeFiles/pfindex.dir/build +Scanning dependencies of target CALIBRATION +make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' +make -f src/C/utils/CMakeFiles/CALIBRATION.dir/build.make src/C/utils/CMakeFiles/CALIBRATION.dir/build make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' [ 58%] Building C object src/C/CMakeFiles/pfindex.dir/prg/pfindex.c.o cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/pfindex.dir/prg/pfindex.c.o -c /build/pftools-3.2.6/src/C/prg/pfindex.c -[ 58%] Built target 2ft -make -f src/C/utils/CMakeFiles/CALIBRATION.dir/build.make src/C/utils/CMakeFiles/CALIBRATION.dir/depend +[ 59%] Building C object src/C/utils/CMakeFiles/CALIBRATION.dir/random.c.o +[ 59%] Built target SYSTEM +make -f src/C/CMakeFiles/pfdump.dir/build.make src/C/CMakeFiles/pfdump.dir/depend +cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/CALIBRATION.dir/random.c.o -c /build/pftools-3.2.6/src/C/utils/random.c make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/C/utils /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/CALIBRATION.dir/DependInfo.cmake --color= -Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/CALIBRATION.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/CALIBRATION.dir/depend.internal". -Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils/CMakeFiles/CALIBRATION.dir/depend.internal". -Scanning dependencies of target CALIBRATION +cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/C /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfdump.dir/DependInfo.cmake --color= +Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfdump.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfdump.dir/depend.internal". +Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfdump.dir/depend.internal". +Scanning dependencies of target pfdump make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -make -f src/C/utils/CMakeFiles/CALIBRATION.dir/build.make src/C/utils/CMakeFiles/CALIBRATION.dir/build +make -f src/C/CMakeFiles/pfdump.dir/build.make src/C/CMakeFiles/pfdump.dir/build make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -[ 59%] Linking Fortran executable 6ft -cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/6ft.dir/link.txt --verbose=1 -[ 61%] Building C object src/C/utils/CMakeFiles/CALIBRATION.dir/random.c.o -cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/CALIBRATION.dir/random.c.o -c /build/pftools-3.2.6/src/C/utils/random.c -[ 62%] Linking Fortran executable psa2msa -cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/psa2msa.dir/link.txt --verbose=1 -/usr/bin/f95 -Wl,--enable-new-dtags -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong CMakeFiles/6ft.dir/6ft.f.o -o 6ft -/usr/bin/f95 -Wl,--enable-new-dtags -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong CMakeFiles/psa2msa.dir/io.c.o CMakeFiles/psa2msa.dir/psa2msa.f.o -o psa2msa +[ 61%] Building C object src/C/CMakeFiles/pfdump.dir/utils/io.c.o +cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -D_TEST -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/pfdump.dir/utils/io.c.o -c /build/pftools-3.2.6/src/C/utils/io.c /build/pftools-3.2.6/src/C/prg/pfindex.c: In function 'Usage': /build/pftools-3.2.6/src/C/prg/pfindex.c:84:39: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 84 | " Version " PF_VERSION " built on " __DATE__ " at " __TIME__ ".\n", stream); @@ -1113,86 +1153,60 @@ /build/pftools-3.2.6/src/C/prg/pfindex.c:84:55: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 84 | " Version " PF_VERSION " built on " __DATE__ " at " __TIME__ ".\n", stream); | ^~~~~~~~ -make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -[ 64%] Building C object src/C/utils/CMakeFiles/CALIBRATION.dir/histogram.c.o +[ 62%] Building C object src/C/utils/CMakeFiles/CALIBRATION.dir/histogram.c.o cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/CALIBRATION.dir/histogram.c.o -c /build/pftools-3.2.6/src/C/utils/histogram.c -[ 64%] Built target 6ft -make -f src/C/CMakeFiles/pfdump.dir/build.make src/C/CMakeFiles/pfdump.dir/depend -make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/C /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfdump.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfdump.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfdump.dir/depend.internal". -Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfdump.dir/depend.internal". -Scanning dependencies of target pfdump -make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -make -f src/C/CMakeFiles/pfdump.dir/build.make src/C/CMakeFiles/pfdump.dir/build -make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -[ 64%] Built target psa2msa -[ 65%] Building C object src/C/CMakeFiles/pfdump.dir/utils/io.c.o -cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -D_TEST -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/pfdump.dir/utils/io.c.o -c /build/pftools-3.2.6/src/C/utils/io.c -[ 67%] Building C object src/C/utils/CMakeFiles/CALIBRATION.dir/quantileregression.c.o -cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/CALIBRATION.dir/quantileregression.c.o -c /build/pftools-3.2.6/src/C/utils/quantileregression.c -[ 68%] Linking C executable pfindex +[ 64%] Linking Fortran executable psa2msa +cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/psa2msa.dir/link.txt --verbose=1 +[ 65%] Linking C executable pfindex cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfindex.dir/link.txt --verbose=1 +/usr/bin/f95 -Wl,--enable-new-dtags -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong CMakeFiles/psa2msa.dir/io.c.o CMakeFiles/psa2msa.dir/psa2msa.f.o -o psa2msa +[ 67%] Linking Fortran executable 6ft +cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/6ft.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -Wl,--enable-new-dtags CMakeFiles/pfindex.dir/prg/pfindex.c.o utils/CMakeFiles/SEQUENCES.dir/ReadSequence.c.o -o pfindex +/usr/bin/f95 -Wl,--enable-new-dtags -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong CMakeFiles/6ft.dir/6ft.f.o -o 6ft make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -[ 68%] Built target pfindex -[ 70%] Building C object src/C/utils/CMakeFiles/CALIBRATION.dir/generatesequences.c.o -cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/CALIBRATION.dir/generatesequences.c.o -c /build/pftools-3.2.6/src/C/utils/generatesequences.c -make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -[ 70%] Built target PROFILES +[ 67%] Built target PROFILES make -f src/C/CMakeFiles/pfsearchV3.dir/build.make src/C/CMakeFiles/pfsearchV3.dir/depend make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/C /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfsearchV3.dir/DependInfo.cmake --color= -make -f src/C/CMakeFiles/pfscanV3.dir/build.make src/C/CMakeFiles/pfscanV3.dir/depend -make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/C /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfscanV3.dir/DependInfo.cmake --color= -Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfscanV3.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfscanV3.dir/depend.internal". -Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfscanV3.dir/depend.internal". -Scanning dependencies of target pfscanV3 +make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfsearchV3.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfsearchV3.dir/depend.internal". Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfsearchV3.dir/depend.internal". Scanning dependencies of target pfsearchV3 +[ 67%] Built target pfindex make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -make -f src/C/CMakeFiles/pfscanV3.dir/build.make src/C/CMakeFiles/pfscanV3.dir/build -make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/C/CMakeFiles/pfsearchV3.dir/build.make src/C/CMakeFiles/pfsearchV3.dir/build make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -[ 71%] Building C object src/C/CMakeFiles/pfscanV3.dir/prg/pfscan.c.o -cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -D__USE_AFFINITY__ -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/pfscanV3.dir/prg/pfscan.c.o -c /build/pftools-3.2.6/src/C/prg/pfscan.c -[ 73%] Linking C executable pfpam -cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfpam.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -Wl,--enable-new-dtags CMakeFiles/pfpam.dir/utils/pam.c.o CMakeFiles/pfpam.dir/utils/io.c.o CMakeFiles/pfpam.dir/utils/random.c.o -o pfpam -[ 74%] Building C object src/C/CMakeFiles/pfsearchV3.dir/prg/pfsearch.c.o +make -f src/C/CMakeFiles/pfscanV3.dir/build.make src/C/CMakeFiles/pfscanV3.dir/depend +make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' +cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/C /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfscanV3.dir/DependInfo.cmake --color= +[ 68%] Building C object src/C/CMakeFiles/pfsearchV3.dir/prg/pfsearch.c.o cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -D__USE_AFFINITY__ -I/usr/include -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/pfsearchV3.dir/prg/pfsearch.c.o -c /build/pftools-3.2.6/src/C/prg/pfsearch.c -[ 76%] Linking Fortran executable pfw -cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfw.dir/link.txt --verbose=1 -/usr/bin/f95 -Wl,--enable-new-dtags -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong CMakeFiles/pfw.dir/io.c.o CMakeFiles/pfw.dir/pfw.f.o -o pfw +[ 68%] Built target psa2msa +Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfscanV3.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfscanV3.dir/depend.internal". +Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfscanV3.dir/depend.internal". +Scanning dependencies of target pfscanV3 make -f src/C/CMakeFiles/pfemit.dir/build.make src/C/CMakeFiles/pfemit.dir/depend +make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/C /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfemit.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -/build/pftools-3.2.6/src/C/prg/pfscan.c: In function 'Usage': -/build/pftools-3.2.6/src/C/prg/pfscan.c:154:41: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 154 | " Version " PF_VERSION " built on " __DATE__ " at " __TIME__ ".\n", - | ^~~~~~~~ -/build/pftools-3.2.6/src/C/prg/pfscan.c:154:57: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 154 | " Version " PF_VERSION " built on " __DATE__ " at " __TIME__ ".\n", - | ^~~~~~~~ -/build/pftools-3.2.6/src/C/prg/pfscan.c: In function 'main': -/build/pftools-3.2.6/src/C/prg/pfscan.c:368:10: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 368 | fputs(HEADER - | ^~~~~~ -/build/pftools-3.2.6/src/C/prg/pfscan.c:26:23: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 26 | "| Built on " __DATE__ " at " __TIME__ ". |\n" - | ^~~~~~~~ -/build/pftools-3.2.6/src/C/prg/pfscan.c:368:10: note: in expansion of macro 'HEADER' - 368 | fputs(HEADER - | ^~~~~~ +make -f src/C/CMakeFiles/pfscanV3.dir/build.make src/C/CMakeFiles/pfscanV3.dir/build +make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' +[ 68%] Built target 6ft Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfemit.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfemit.dir/depend.internal". Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfemit.dir/depend.internal". Scanning dependencies of target pfemit +make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' +make -f src/C/CMakeFiles/pfemit.dir/build.make src/C/CMakeFiles/pfemit.dir/build +[ 70%] Building C object src/C/CMakeFiles/pfscanV3.dir/prg/pfscan.c.o +make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' +cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -D__USE_AFFINITY__ -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/pfscanV3.dir/prg/pfscan.c.o -c /build/pftools-3.2.6/src/C/prg/pfscan.c +[ 71%] Building C object src/C/utils/CMakeFiles/CALIBRATION.dir/quantileregression.c.o +cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/CALIBRATION.dir/quantileregression.c.o -c /build/pftools-3.2.6/src/C/utils/quantileregression.c +[ 73%] Building C object src/C/CMakeFiles/pfemit.dir/utils/generatesequences.c.o +cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -D_PFEMIT -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/pfemit.dir/utils/generatesequences.c.o -c /build/pftools-3.2.6/src/C/utils/generatesequences.c /build/pftools-3.2.6/src/C/prg/pfsearch.c: In function 'Usage': /build/pftools-3.2.6/src/C/prg/pfsearch.c:191:39: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 191 | " Version " PF_VERSION " built on " __DATE__ " at " __TIME__ ".\n", OutputPrintWidth); @@ -1210,29 +1224,63 @@ /build/pftools-3.2.6/src/C/prg/pfsearch.c:494:9: note: in expansion of macro 'HEADER' 494 | fputs(HEADER | ^~~~~~ +[ 74%] Linking C executable pfpam +cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfpam.dir/link.txt --verbose=1 +/build/pftools-3.2.6/src/C/prg/pfscan.c: In function 'Usage': +/build/pftools-3.2.6/src/C/prg/pfscan.c:154:41: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 154 | " Version " PF_VERSION " built on " __DATE__ " at " __TIME__ ".\n", + | ^~~~~~~~ +/build/pftools-3.2.6/src/C/prg/pfscan.c:154:57: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 154 | " Version " PF_VERSION " built on " __DATE__ " at " __TIME__ ".\n", + | ^~~~~~~~ +/build/pftools-3.2.6/src/C/prg/pfscan.c: In function 'main': +/build/pftools-3.2.6/src/C/prg/pfscan.c:368:10: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 368 | fputs(HEADER + | ^~~~~~ +/build/pftools-3.2.6/src/C/prg/pfscan.c:26:23: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 26 | "| Built on " __DATE__ " at " __TIME__ ". |\n" + | ^~~~~~~~ +/build/pftools-3.2.6/src/C/prg/pfscan.c:368:10: note: in expansion of macro 'HEADER' + 368 | fputs(HEADER + | ^~~~~~ +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -Wl,--enable-new-dtags CMakeFiles/pfpam.dir/utils/pam.c.o CMakeFiles/pfpam.dir/utils/io.c.o CMakeFiles/pfpam.dir/utils/random.c.o -o pfpam +[ 76%] Building C object src/C/utils/CMakeFiles/CALIBRATION.dir/generatesequences.c.o +cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/utils && /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/CALIBRATION.dir/generatesequences.c.o -c /build/pftools-3.2.6/src/C/utils/generatesequences.c +[ 77%] Linking Fortran executable pfw +cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfw.dir/link.txt --verbose=1 +/usr/bin/f95 -Wl,--enable-new-dtags -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong CMakeFiles/pfw.dir/io.c.o CMakeFiles/pfw.dir/pfw.f.o -o pfw make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -make -f src/C/CMakeFiles/pfemit.dir/build.make src/C/CMakeFiles/pfemit.dir/build -make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -[ 76%] Built target pfpam -make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -[ 77%] Building C object src/C/CMakeFiles/pfemit.dir/utils/generatesequences.c.o -cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -D_PFEMIT -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/pfemit.dir/utils/generatesequences.c.o -c /build/pftools-3.2.6/src/C/utils/generatesequences.c -[ 77%] Built target pfw -[ 79%] Building C object src/C/CMakeFiles/pfemit.dir/utils/random.c.o +[ 79%] Linking Fortran executable gtop +cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/gtop.dir/link.txt --verbose=1 +[ 79%] Built target pfpam +/usr/bin/f95 -Wl,--enable-new-dtags -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong CMakeFiles/gtop.dir/gtop.f.o CMakeFiles/gtop.dir/io.c.o -o gtop +[ 80%] Building C object src/C/CMakeFiles/pfemit.dir/utils/random.c.o cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -D_PFEMIT -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/pfemit.dir/utils/random.c.o -c /build/pftools-3.2.6/src/C/utils/random.c make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -[ 79%] Built target CALIBRATION +[ 80%] Built target pfw +make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' +[ 82%] Linking C executable pfemit +make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' +cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfemit.dir/link.txt --verbose=1 +[ 82%] Built target CALIBRATION make -f src/C/CMakeFiles/pfcalibrateV3.dir/build.make src/C/CMakeFiles/pfcalibrateV3.dir/depend +/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -Wl,--enable-new-dtags CMakeFiles/pfemit.dir/utils/generatesequences.c.o CMakeFiles/pfemit.dir/utils/random.c.o utils/CMakeFiles/PROFILES.dir/io.c.o utils/CMakeFiles/PROFILES.dir/profile.c.o utils/CMakeFiles/PROFILES.dir/Normalization.c.o -o pfemit -lm make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' cd /build/pftools-3.2.6/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/pftools-3.2.6 /build/pftools-3.2.6/src/C /build/pftools-3.2.6/obj-x86_64-linux-gnu /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfcalibrateV3.dir/DependInfo.cmake --color= +[ 82%] Built target gtop Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfcalibrateV3.dir/DependInfo.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfcalibrateV3.dir/depend.internal". Dependee "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C/CMakeFiles/pfcalibrateV3.dir/depend.internal". Scanning dependencies of target pfcalibrateV3 make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' make -f src/C/CMakeFiles/pfcalibrateV3.dir/build.make src/C/CMakeFiles/pfcalibrateV3.dir/build make[3]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -[ 80%] Building C object src/C/CMakeFiles/pfcalibrateV3.dir/prg/pfcalibrate.c.o +[ 83%] Building C object src/C/CMakeFiles/pfcalibrateV3.dir/prg/pfcalibrate.c.o cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cc -D__USE_AFFINITY__ -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/obj-x86_64-linux-gnu/ -I /build/pftools-3.2.6/src/C/include/ -o CMakeFiles/pfcalibrateV3.dir/prg/pfcalibrate.c.o -c /build/pftools-3.2.6/src/C/prg/pfcalibrate.c +make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' +[ 83%] Built target pfemit +[ 85%] Linking Fortran executable ptoh +cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/ptoh.dir/link.txt --verbose=1 +/usr/bin/f95 -Wl,--enable-new-dtags -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong CMakeFiles/ptoh.dir/ptoh.f.o -o ptoh /build/pftools-3.2.6/src/C/prg/pfcalibrate.c: In function 'Usage': /build/pftools-3.2.6/src/C/prg/pfcalibrate.c:287:42: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 287 | " Version " PF_VERSION " built on " __DATE__ " at " __TIME__ ".\n", @@ -1250,21 +1298,8 @@ /build/pftools-3.2.6/src/C/prg/pfcalibrate.c:963:9: note: in expansion of macro 'HEADER' 963 | fputs(HEADER | ^~~~~~ -[ 82%] Linking C executable pfemit -cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfemit.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -Wl,--enable-new-dtags CMakeFiles/pfemit.dir/utils/generatesequences.c.o CMakeFiles/pfemit.dir/utils/random.c.o utils/CMakeFiles/PROFILES.dir/io.c.o utils/CMakeFiles/PROFILES.dir/profile.c.o utils/CMakeFiles/PROFILES.dir/Normalization.c.o -o pfemit -lm -[ 83%] Linking Fortran executable ptoh -cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/ptoh.dir/link.txt --verbose=1 -make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -/usr/bin/f95 -Wl,--enable-new-dtags -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong CMakeFiles/ptoh.dir/ptoh.f.o -o ptoh -[ 85%] Linking Fortran executable gtop -cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/gtop.dir/link.txt --verbose=1 -[ 85%] Built target pfemit -/usr/bin/f95 -Wl,--enable-new-dtags -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong CMakeFiles/gtop.dir/gtop.f.o CMakeFiles/gtop.dir/io.c.o -o gtop make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' [ 85%] Built target ptoh -make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -[ 85%] Built target gtop [ 86%] Linking C executable pfscanV3 cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfscanV3.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -Wl,--enable-new-dtags CMakeFiles/pfscanV3.dir/prg/pfscan.c.o utils/CMakeFiles/PROFILES.dir/io.c.o utils/CMakeFiles/PROFILES.dir/profile.c.o utils/CMakeFiles/PROFILES.dir/Normalization.c.o utils/CMakeFiles/SEQUENCES.dir/ReadSequence.c.o CMakeFiles/REGEXP.dir/utils/pfregexp.c.o sse2/CMakeFiles/SSE2.dir/heuristic_sse2.c.o sse2/CMakeFiles/SSE2.dir/xali1_sse2.c.o sse2/CMakeFiles/SSE2.dir/xalip_sse2.c.o sse2/CMakeFiles/SSE2.dir/xalit_sse2.c.o sse41/CMakeFiles/SSE41.dir/heuristic_sse41.c.o sse41/CMakeFiles/SSE41.dir/xali1_sse41.c.o sse41/CMakeFiles/SSE41.dir/xalip_sse41.c.o sse41/CMakeFiles/SSE41.dir/xalit_sse41.c.o utils/CMakeFiles/OUTPUT_FORMAT.dir/output.c.o utils/CMakeFiles/SYSTEM.dir/system.c.o -o pfscanV3 /usr/lib/x86_64-linux-gnu/libpcre.so -lm -lpthread @@ -1278,30 +1313,30 @@ [ 89%] Linking Fortran executable htop cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/htop.dir/link.txt --verbose=1 /usr/bin/f95 -Wl,--enable-new-dtags -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong CMakeFiles/htop.dir/htop.f.o -o htop +make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' [ 91%] Linking C executable pfcalibrateV3 cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfcalibrateV3.dir/link.txt --verbose=1 -[ 92%] Linking Fortran executable pfscale -cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfscale.dir/link.txt --verbose=1 +[ 91%] Built target htop /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -Wl,--enable-new-dtags CMakeFiles/pfcalibrateV3.dir/prg/pfcalibrate.c.o sse2/CMakeFiles/SSE2.dir/heuristic_sse2.c.o sse2/CMakeFiles/SSE2.dir/xali1_sse2.c.o sse2/CMakeFiles/SSE2.dir/xalip_sse2.c.o sse2/CMakeFiles/SSE2.dir/xalit_sse2.c.o sse41/CMakeFiles/SSE41.dir/heuristic_sse41.c.o sse41/CMakeFiles/SSE41.dir/xali1_sse41.c.o sse41/CMakeFiles/SSE41.dir/xalip_sse41.c.o sse41/CMakeFiles/SSE41.dir/xalit_sse41.c.o utils/CMakeFiles/PROFILES.dir/io.c.o utils/CMakeFiles/PROFILES.dir/profile.c.o utils/CMakeFiles/PROFILES.dir/Normalization.c.o utils/CMakeFiles/SEQUENCES_EXTRA.dir/pam.c.o utils/CMakeFiles/SEQUENCES.dir/ReadSequence.c.o utils/CMakeFiles/CALIBRATION.dir/random.c.o utils/CMakeFiles/CALIBRATION.dir/histogram.c.o utils/CMakeFiles/CALIBRATION.dir/quantileregression.c.o utils/CMakeFiles/CALIBRATION.dir/generatesequences.c.o ../Fortran/CMakeFiles/quantile.dir/rq0.f.o utils/CMakeFiles/SYSTEM.dir/system.c.o -o pfcalibrateV3 -lm -lpthread -lgfortran -lm -lquadmath -lm -make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -/usr/bin/f95 -Wl,--enable-new-dtags -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong CMakeFiles/pfscale.dir/pfscale.f.o -o pfscale -[ 92%] Built target htop /usr/bin/ld: CMakeFiles/pfcalibrateV3.dir/prg/pfcalibrate.c.o: in function `main': ./obj-x86_64-linux-gnu/src/C/./src/C/prg/pfcalibrate.c:1383: warning: the use of `tempnam' is dangerous, better use `mkstemp' make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -[ 94%] Linking Fortran executable ptof -cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/ptof.dir/link.txt --verbose=1 -[ 94%] Built target pfcalibrateV3 -make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -/usr/bin/f95 -Wl,--enable-new-dtags -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong CMakeFiles/ptof.dir/ptof.f.o -o ptof -[ 94%] Built target pfscale +[ 91%] Built target pfcalibrateV3 +[ 92%] Linking Fortran executable pfscale +cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfscale.dir/link.txt --verbose=1 +/usr/bin/f95 -Wl,--enable-new-dtags -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong CMakeFiles/pfscale.dir/pfscale.f.o -o pfscale make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -[ 94%] Built target ptof -[ 95%] Linking C executable pfsearchV3 +[ 92%] Built target pfscale +[ 94%] Linking C executable pfsearchV3 cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/C && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfsearchV3.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -msse2 -fms-extensions -Wl,--enable-new-dtags CMakeFiles/pfsearchV3.dir/prg/pfsearch.c.o utils/CMakeFiles/PROFILES.dir/io.c.o utils/CMakeFiles/PROFILES.dir/profile.c.o utils/CMakeFiles/PROFILES.dir/Normalization.c.o utils/CMakeFiles/SEQUENCES.dir/ReadSequence.c.o sse2/CMakeFiles/SSE2.dir/heuristic_sse2.c.o sse2/CMakeFiles/SSE2.dir/xali1_sse2.c.o sse2/CMakeFiles/SSE2.dir/xalip_sse2.c.o sse2/CMakeFiles/SSE2.dir/xalit_sse2.c.o sse41/CMakeFiles/SSE41.dir/heuristic_sse41.c.o sse41/CMakeFiles/SSE41.dir/xali1_sse41.c.o sse41/CMakeFiles/SSE41.dir/xalip_sse41.c.o sse41/CMakeFiles/SSE41.dir/xalit_sse41.c.o utils/CMakeFiles/OUTPUT_FORMAT.dir/output.c.o CMakeFiles/REGEXP.dir/utils/pfregexp.c.o utils/CMakeFiles/SYSTEM.dir/system.c.o -o pfsearchV3 /usr/lib/x86_64-linux-gnu/libpcre.so -lm -lpthread make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -[ 95%] Built target pfsearchV3 +[ 94%] Built target pfsearchV3 +[ 95%] Linking Fortran executable ptof +cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/ptof.dir/link.txt --verbose=1 +/usr/bin/f95 -Wl,--enable-new-dtags -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong CMakeFiles/ptof.dir/ptof.f.o -o ptof +make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' +[ 95%] Built target ptof [ 97%] Linking Fortran executable pfmake cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfmake.dir/link.txt --verbose=1 /usr/bin/f95 -Wl,--enable-new-dtags -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong CMakeFiles/pfmake.dir/pfmake.f.o -o pfmake @@ -1309,13 +1344,13 @@ [ 97%] Built target pfmake [ 98%] Linking Fortran executable pfscan cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfscan.dir/link.txt --verbose=1 -[100%] Linking Fortran executable pfsearch /usr/bin/f95 -Wl,--enable-new-dtags -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong CMakeFiles/pfscan.dir/pfscan.f.o -o pfscan +make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' +[ 98%] Built target pfscan +[100%] Linking Fortran executable pfsearch cd /build/pftools-3.2.6/obj-x86_64-linux-gnu/src/Fortran && /usr/bin/cmake -E cmake_link_script CMakeFiles/pfsearch.dir/link.txt --verbose=1 /usr/bin/f95 -Wl,--enable-new-dtags -g -O2 -fdebug-prefix-map=/build/pftools-3.2.6=. -fstack-protector-strong CMakeFiles/pfsearch.dir/pfsearch.f.o -o pfsearch make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -[100%] Built target pfscan [100%] Built target pfsearch make[2]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/pftools-3.2.6/obj-x86_64-linux-gnu/CMakeFiles 0 @@ -1329,21 +1364,21 @@ /usr/bin/ctest --force-new-ctest-process -j1 Test project /build/pftools-3.2.6/obj-x86_64-linux-gnu Start 1: execute_test_V2.sh -1/5 Test #1: execute_test_V2.sh ................. Passed 1.08 sec +1/5 Test #1: execute_test_V2.sh ................. Passed 0.62 sec Start 2: execute_test_V3.sh -2/5 Test #2: execute_test_V3.sh ................. Passed 48.43 sec +2/5 Test #2: execute_test_V3.sh ................. Passed 40.49 sec Start 3: check_output_of_test_V3.sh -3/5 Test #3: check_output_of_test_V3.sh ......... Passed 72.98 sec +3/5 Test #3: check_output_of_test_V3.sh ......... Passed 39.73 sec Start 4: execute_test_scan_search.pl -4/5 Test #4: execute_test_scan_search.pl ........ Passed 46.86 sec +4/5 Test #4: execute_test_scan_search.pl ........ Passed 9.67 sec Start 5: execute_test_pfsearchV3_iupac.pl -5/5 Test #5: execute_test_pfsearchV3_iupac.pl ... Passed 61.37 sec +5/5 Test #5: execute_test_pfsearchV3_iupac.pl ... Passed 34.24 sec 100% tests passed, 0 tests failed out of 5 -Total Test time (real) = 230.73 sec +Total Test time (real) = 124.76 sec make[2]: Leaving directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' -export PATH=/build/pftools-3.2.6/src/Fortran/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games ; \ +export PATH=/build/pftools-3.2.6/src/Fortran/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path ; \ echo ${PATH} ; \ cd data ; \ . ./test.sh | \ @@ -1351,8 +1386,8 @@ -e '/^DT */d' > test.build ; \ grep -v '^DT *' test.out > test.compare ; \ diff -u test.compare test.build || true -/build/pftools-3.2.6/src/Fortran/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games -/bin/sh: 4: .: cannot open ./test.sh: No such file +/build/pftools-3.2.6/src/Fortran/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path +/bin/sh: line 4: ./test.sh: No such file or directory grep: test.out: No such file or directory make[1]: Leaving directory '/build/pftools-3.2.6' create-stamp debian/debhelper-build-stamp @@ -1360,7 +1395,7 @@ debian/rules override_dh_auto_install make[1]: Entering directory '/build/pftools-3.2.6' dh_auto_install - cd obj-x86_64-linux-gnu && make -j15 install DESTDIR=/build/pftools-3.2.6/debian/pftools AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j16 install DESTDIR=/build/pftools-3.2.6/debian/pftools AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/pftools-3.2.6/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/pftools-3.2.6 -B/build/pftools-3.2.6/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 -- +--------------------------------------------------------------------+ @@ -1588,8 +1623,8 @@ dpkg-gencontrol: warning: package pftools: substitution variable ${perl:Depends} unused, but is defined dh_md5sums dh_builddeb -dpkg-deb: building package 'pftools-dbgsym' in '../pftools-dbgsym_3.2.6-1_amd64.deb'. dpkg-deb: building package 'pftools' in '../pftools_3.2.6-1_amd64.deb'. +dpkg-deb: building package 'pftools-dbgsym' in '../pftools-dbgsym_3.2.6-1_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../pftools_3.2.6-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1597,12 +1632,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2355030/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2355030/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3142527 and its subdirectories -I: Current time: Thu Dec 30 11:40:51 -12 2021 -I: pbuilder-time-stamp: 1640907651 +I: removing directory /srv/workspace/pbuilder/2355030 and its subdirectories +I: Current time: Thu Feb 2 20:07:33 +14 2023 +I: pbuilder-time-stamp: 1675318053